HHsearch alignment for GI: 254780877 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.81 E-value=0.0066 Score=42.58 Aligned_cols=39 Identities=26% Similarity=0.543 Sum_probs=30.2
Q ss_pred EEEE-EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 2898-726786168899999998723776530022447740
Q gi|254780877|r 599 GSFM-FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 599 ~~fl-f~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
T Consensus 356 Ge~laIIGPSgSGKStLaR~~vG~W~-~~~G~VRLDGadl~ 395 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLARILVGIWP-PASGSVRLDGADLK 395 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC-CCCCCEEEEHHHHH
T ss_conf 74588874786525889878872101-35653364033440