HHsearch alignment for GI: 254780877 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.17 E-value=7.1e-10 Score=99.23 Aligned_cols=192 Identities=23% Similarity=0.420 Sum_probs=124.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCH---------HHHC
Q ss_conf 6745948999999999987410123656651289872678616889999999872377653002244---------7740
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDM---------SEYM 638 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dM---------sey~ 638 (853)
T Consensus 14 ~d~~GQ~~iv~tL~NAi~~~ri~--------HAYLF~GpRGtGKTS~ARIfAKaL----NC~-~~~~~PCn~C~~C~~i~ 80 (363)
T TIGR02397 14 EDVIGQEHIVKTLKNAIKNGRIA--------HAYLFSGPRGTGKTSIARIFAKAL----NCQ-GPDGEPCNECESCKEIN 80 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC--------CEEEECCCCCCCHHHHHHHHHHHH----CCC-CCCCCCCCCCCHHHHHH
T ss_conf 10235179999999999718966--------234502859976355899999986----588-78778777750227765
Q ss_pred CCCCCCHH-HCCCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCE
Q ss_conf 34532013-047711203566774211322156----4102202144149899999999840457887999778303315
Q gi|254780877|r 639 EKHSVSRL-IGSPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTL 713 (853)
Q Consensus 639 e~~~vs~L-iGappGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~i 713 (853)
T Consensus 81 ~g~~~DviEiDA-ASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP-----------~hV~ 148 (363)
T TIGR02397 81 SGSSLDVIEIDA-ASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-----------EHVV 148 (363)
T ss_pred CCCCCCEEEECC-CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC-----------CCEE
T ss_conf 289866688648-6568788999998730368755443358873230286568999876522798-----------7628
Q ss_pred EE-ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 59-54851268764032679999999998628857726668158628899899999999999999999985798999988
Q gi|254780877|r 714 II-MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDD 792 (853)
Q Consensus 714 ii-~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~ 792 (853)
T Consensus 149 FIlATTE~---------~------------KiP~TIlSRCQ-rF~Fk~i~~~~i~~~L~~-------I~~~E~--I~~e~ 197 (363)
T TIGR02397 149 FILATTEP---------H------------KIPATILSRCQ-RFDFKRIPLEDIVERLKK-------ILDKEG--IKIED 197 (363)
T ss_pred EEEECCCH---------H------------HCCCCCEEECE-EECCCCCCHHHHHHHHHH-------HHHHHC--CCCCH
T ss_conf 88734871---------1------------20554021000-312678998999999999-------998708--83177
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 99999997089822062157999998
Q gi|254780877|r 793 QVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 793 ~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
T Consensus 198 ~AL~~IA~~a---~GS~RDAlsllDQ 220 (363)
T TIGR02397 198 EALELIARAA---DGSMRDALSLLDQ 220 (363)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHH
T ss_conf 8999999962---8961068899999