HHsearch alignment for GI: 254780877 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.47 E-value=3.3e-05 Score=61.28 Aligned_cols=200 Identities=24% Similarity=0.295 Sum_probs=140.3
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCC-CCCHHHCCC------------E
Q ss_conf 9872985333335789999999633677786-6895288740777999999987348-998444574------------3
Q gi|254780877|r 171 EARNGKLDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIING-DIPESLKGK------------R 236 (853)
Q Consensus 171 ~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~-~vp~~l~~~------------~ 236 (853)
T Consensus 7 KyRP~~F~d~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~~D 86 (363)
T TIGR02397 7 KYRPQTFEDVIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSSLD 86 (363)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 23788611023517999999999971896623450285997635589999998658878778777750227765289866
Q ss_pred EEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHCCC--CEEE
Q ss_conf 78873135421745420245458999999860799---76999636277302666554335888-876531246--6048
Q gi|254780877|r 237 LMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDG---EIILFIDELHVLVGAGKTDGAMDASN-LLKPSLARG--ELHC 310 (853)
Q Consensus 237 i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~---~~ilfide~h~~~gaG~~~g~~Daan-~LKP~LarG--~l~~ 310 (853)
T Consensus 87 viEiD------AASN~gV--D~IR~l~e~v~y~P~~~kYKvYIIDEVHML--------S~~AFNALLK-TLEEPP~hV~F 149 (363)
T TIGR02397 87 VIEID------AASNNGV--DDIRELRENVKYAPSKGKYKVYIIDEVHML--------SKSAFNALLK-TLEEPPEHVVF 149 (363)
T ss_pred EEEEC------CCCCCCH--HHHHHHHHHHCCCCCCCCCCEEEEECCCCC--------CHHHHHHHHH-HHCCCCCCEEE
T ss_conf 68864------8656878--899999873036875544335887323028--------6568999876-52279876288
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA 390 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA 390 (853)
T Consensus 150 IlATT--E~~KiP--~T-IlSRCQrF~Fk~i~~~~i~~~L~~I~~~E----~I~~e~~AL~~IA~~a~GS~RD------A 214 (363)
T TIGR02397 150 ILATT--EPHKIP--AT-ILSRCQRFDFKRIPLEDIVERLKKILDKE----GIKIEDEALELIARAADGSMRD------A 214 (363)
T ss_pred EEECC--CHHHCC--CC-CEEECEEECCCCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCCCCH------H
T ss_conf 87348--711205--54-02100031267899899999999999870----8831778999999962896106------8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999875
Q gi|254780877|r 391 IDLMDEASARVR 402 (853)
Q Consensus 391 IDllDeA~A~~~ 402 (853)
T Consensus 215 lsllDQ~~~~~~ 226 (363)
T TIGR02397 215 LSLLDQAISFGN 226 (363)
T ss_pred HHHHHHHHHHCC
T ss_conf 899999998268