HHsearch alignment for GI: 254780877 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.74  E-value=0.00014  Score=56.15  Aligned_cols=178  Identities=24%  Similarity=0.447  Sum_probs=110.6

Q ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC-C-------CCCCCCCHHHHCCCC
Q ss_conf             45948999999999987410123656651289872678616889999999872377-6-------530022447740345
Q gi|254780877|r  570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD-E-------NSMIRIDMSEYMEKH  641 (853)
Q Consensus       570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~-~-------~~lir~dMsey~e~~  641 (853)
T Consensus       210 LIGRE~EleRtiQvLCR-----R~KNNP----l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~L----  276 (774)
T TIGR02639       210 LIGREDELERTIQVLCR-----RKKNNP----LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTL----  276 (774)
T ss_pred             CCCCHHHHHHHHHHHCC-----CCCCCC----CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHH----
T ss_conf             34566887423332034-----567887----20448886448999999998641564670024783454043456----


Q ss_pred             CCCHHHCCCCHHCC-CCCC-CCCCHHHHCCCCC-EEEEHHHHH---------CCHHHHHHHHHHHHCCEEECCCCCEEEC
Q ss_conf             32013047711203-5667-7421132215641-022021441---------4989999999984045788799977830
Q gi|254780877|r  642 SVSRLIGSPPGYVG-YEEG-GALTEAVRRHPYQ-VVLFDEIEK---------AHSDVHNILLQVLDDGRLTDSQGRTVDF  709 (853)
Q Consensus       642 ~vs~LiGappGYvG-~~~g-g~Lte~vr~~P~s-Vil~DEiEK---------ah~~v~~~llqild~G~ltd~~G~~v~f  709 (853)
T Consensus       277 ----LAGT--KYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iR-----C---  342 (774)
T TIGR02639       277 ----LAGT--KYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIR-----C---  342 (774)
T ss_pred             ----HHHC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEE-----E---
T ss_conf             ----4102--4542478999999999852899954664110103317878751552443211253078778-----6---


Q ss_pred             CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCC--HHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             331559548512687640326799999999986288--577266681586288998999999999999999999857989
Q gi|254780877|r  710 RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFK--PEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS  787 (853)
Q Consensus       710 ~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~--peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~  787 (853)
T Consensus       343 ----------IGsTTy------------~EY~~~FeKDrALsRRFQKIDv~EP-s~eet~~IL----kGLk~~YE~-fH~  394 (774)
T TIGR02639       343 ----------IGSTTY------------EEYKNHFEKDRALSRRFQKIDVGEP-SIEETVKIL----KGLKEQYEE-FHH  394 (774)
T ss_pred             ----------ECCCCH------------HHHHCHHHCCCCCCCCCCEECCCCC-CHHHHHHHH----HHHHHHHHC-CCC
T ss_conf             ----------226524------------8641110102021654233117957-888999999----865542013-250


Q ss_pred             EEECHHHHHHHHHCC
Q ss_conf             999889999999708
Q gi|254780877|r  788 MDFDDQVIDWLSCRG  802 (853)
Q Consensus       788 l~~~~~~~~~l~~~~  802 (853)
T Consensus       395 V~Y~~eal~~Av~LS  409 (774)
T TIGR02639       395 VKYSDEALEAAVELS  409 (774)
T ss_pred             EECCHHHHHHHHHHH
T ss_conf             113869999999998