HHsearch alignment for GI: 254780877 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.74 E-value=0.00014 Score=56.15 Aligned_cols=178 Identities=24% Similarity=0.447 Sum_probs=110.6
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC-C-------CCCCCCCHHHHCCCC
Q ss_conf 45948999999999987410123656651289872678616889999999872377-6-------530022447740345
Q gi|254780877|r 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD-E-------NSMIRIDMSEYMEKH 641 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~-~-------~~lir~dMsey~e~~ 641 (853)
T Consensus 210 LIGRE~EleRtiQvLCR-----R~KNNP----l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~L---- 276 (774)
T TIGR02639 210 LIGREDELERTIQVLCR-----RKKNNP----LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTL---- 276 (774)
T ss_pred CCCCHHHHHHHHHHHCC-----CCCCCC----CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHH----
T ss_conf 34566887423332034-----567887----20448886448999999998641564670024783454043456----
Q ss_pred CCCHHHCCCCHHCC-CCCC-CCCCHHHHCCCCC-EEEEHHHHH---------CCHHHHHHHHHHHHCCEEECCCCCEEEC
Q ss_conf 32013047711203-5667-7421132215641-022021441---------4989999999984045788799977830
Q gi|254780877|r 642 SVSRLIGSPPGYVG-YEEG-GALTEAVRRHPYQ-VVLFDEIEK---------AHSDVHNILLQVLDDGRLTDSQGRTVDF 709 (853)
Q Consensus 642 ~vs~LiGappGYvG-~~~g-g~Lte~vr~~P~s-Vil~DEiEK---------ah~~v~~~llqild~G~ltd~~G~~v~f 709 (853)
T Consensus 277 ----LAGT--KYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iR-----C--- 342 (774)
T TIGR02639 277 ----LAGT--KYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIR-----C--- 342 (774)
T ss_pred ----HHHC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEE-----E---
T ss_conf ----4102--4542478999999999852899954664110103317878751552443211253078778-----6---
Q ss_pred CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCC--HHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 331559548512687640326799999999986288--577266681586288998999999999999999999857989
Q gi|254780877|r 710 RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFK--PEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS 787 (853)
Q Consensus 710 ~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~--peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~ 787 (853)
T Consensus 343 ----------IGsTTy------------~EY~~~FeKDrALsRRFQKIDv~EP-s~eet~~IL----kGLk~~YE~-fH~ 394 (774)
T TIGR02639 343 ----------IGSTTY------------EEYKNHFEKDRALSRRFQKIDVGEP-SIEETVKIL----KGLKEQYEE-FHH 394 (774)
T ss_pred ----------ECCCCH------------HHHHCHHHCCCCCCCCCCEECCCCC-CHHHHHHHH----HHHHHHHHC-CCC
T ss_conf ----------226524------------8641110102021654233117957-888999999----865542013-250
Q ss_pred EEECHHHHHHHHHCC
Q ss_conf 999889999999708
Q gi|254780877|r 788 MDFDDQVIDWLSCRG 802 (853)
Q Consensus 788 l~~~~~~~~~l~~~~ 802 (853)
T Consensus 395 V~Y~~eal~~Av~LS 409 (774)
T TIGR02639 395 VKYSDEALEAAVELS 409 (774)
T ss_pred EECCHHHHHHHHHHH
T ss_conf 113869999999998