HHsearch alignment for GI: 254780877 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.44 E-value=0.037 Score=36.46 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=68.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHC--CCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 66895288740777999999987348--998444574378873135421--74542024545899999986079976999
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIA--GAKFRGEFEERLKSLLCEIRSEDGEIILF 276 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~a--g~~~rg~~e~r~~~i~~~~~~~~~~~ilf 276 (853)
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie--~~~g~si~eif~~~Ge~~FR~~E~~---~l~~~~~~~-~~V-- 72 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIE--QRAGMSIPEIFAEEGEEGFRELERE---VLLLLLTKE-NAV-- 72 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHH--HHHCCCHHHHHHHCCHHHHHHHHHH---HHHHHHCCC-CEE--
T ss_conf 98998899998899999999997989796859999--9949999999987493878999999---999985689-859--
Q ss_pred ECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 63627730266655433588887653124660489974489999973001113202311111577767899999997898
Q gi|254780877|r 277 IDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKER 356 (853)
Q Consensus 277 ide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~ 356 (853)
T Consensus 73 -------Is~GGG~-v~~~~~~--~~l~~~~~vI~L~~~~~~l~~Rl~~~~--~R---Pll-~~~~~~~l~~l~~~R~~~ 136 (154)
T cd00464 73 -------IATGGGA-VLREENR--RLLLENGIVVWLDASPEELLERLARDK--TR---PLL-QDEDPERLRELLEEREPL 136 (154)
T ss_pred -------EECCCCC-CCCHHHH--HHHHHCCEEEEEECCHHHHHHHHHCCC--CC---CCC-CCCCHHHHHHHHHHHHHH
T ss_conf -------9738973-3689999--999957908999579999999960799--99---988-899999999999999999
Q ss_pred HHHHCCCCC
Q ss_conf 654149610
Q gi|254780877|r 357 YEQHHKVRI 365 (853)
Q Consensus 357 yE~~H~V~i 365 (853)
T Consensus 137 Y~~~Ad~~i 145 (154)
T cd00464 137 YREVADLTI 145 (154)
T ss_pred HHHHCCEEE
T ss_conf 998799999