HHsearch alignment for GI: 254780877 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.75 E-value=0.0028 Score=45.64 Aligned_cols=182 Identities=19% Similarity=0.357 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHCCC--CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-------
Q ss_conf 78999999963367--778668952887407779999999873489984445743788731354217454202-------
Q gi|254780877|r 184 DDEMRRAIQVLSRR--TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE------- 254 (853)
Q Consensus 184 e~EI~~~~~iL~r~--~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~------- 254 (853)
T Consensus 68 i~ElDRV---LGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~-------~~vLYvSGEES~~QIk~RA~RLg~~~~ 137 (372)
T cd01121 68 IEELDRV---LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRLGISTE 137 (372)
T ss_pred CHHHHHH---HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf 3666540---057730671799825998868899999999998639-------938998245678999989998587887
Q ss_pred -----HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC--CCCCCCC-----HHHHHHHHHCCCC-EEEEEEECHHHHHH
Q ss_conf -----454589999998607997699963627730266--6554335-----8888765312466-04899744899999
Q gi|254780877|r 255 -----FEERLKSLLCEIRSEDGEIILFIDELHVLVGAG--KTDGAMD-----ASNLLKPSLARGE-LHCIGATTLDEYRK 321 (853)
Q Consensus 255 -----~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG--~~~g~~D-----aan~LKP~LarG~-l~~IgaTT~~Eyrk 321 (853)
T Consensus 138 ~l~l~set~le~Il~~i~~~k-P~~lIIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVG--------- 207 (372)
T cd01121 138 NLYLLAETNLEDILASIEELK-PDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG--------- 207 (372)
T ss_pred CCEEEECCCHHHHHHHHHHHC-CCEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE---------
T ss_conf 727884356999999999719-9889995622020377677998789999999999999986197399998---------
Q ss_pred HHHCCHH------HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 7300111------320231111157776789999999789865414961---015899999863332024576
Q gi|254780877|r 322 YIEKDPA------LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVR---ISDSALVSAAVLSNRYITDRF 385 (853)
Q Consensus 322 ~iEkD~A------l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~---i~d~al~~av~ls~rYi~~r~ 385 (853)
T Consensus 208 HVTK~G~iAGPkvLEHmVDtVl~fEgd~~~~~R~LR~~KNRFG~t~EiGvFeM~~~GL~~V~nPS~~Fl~~~~ 280 (372)
T cd01121 208 HVTKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSERE 280 (372)
T ss_pred EECCCCCCCCCHHHEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCC
T ss_conf 7626886377403100213688751577655035674115677754058887316870563685698862698