HHsearch alignment for GI: 254780877 and conserved domain: cd01121

>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.75  E-value=0.0028  Score=45.64  Aligned_cols=182  Identities=19%  Similarity=0.357  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHCCC--CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-------
Q ss_conf             78999999963367--778668952887407779999999873489984445743788731354217454202-------
Q gi|254780877|r  184 DDEMRRAIQVLSRR--TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE-------  254 (853)
Q Consensus       184 e~EI~~~~~iL~r~--~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-------  254 (853)
T Consensus        68 i~ElDRV---LGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~-------~~vLYvSGEES~~QIk~RA~RLg~~~~  137 (372)
T cd01121          68 IEELDRV---LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRLGISTE  137 (372)
T ss_pred             CHHHHHH---HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf             3666540---057730671799825998868899999999998639-------938998245678999989998587887


Q ss_pred             -----HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC--CCCCCCC-----HHHHHHHHHCCCC-EEEEEEECHHHHHH
Q ss_conf             -----454589999998607997699963627730266--6554335-----8888765312466-04899744899999
Q gi|254780877|r  255 -----FEERLKSLLCEIRSEDGEIILFIDELHVLVGAG--KTDGAMD-----ASNLLKPSLARGE-LHCIGATTLDEYRK  321 (853)
Q Consensus       255 -----~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG--~~~g~~D-----aan~LKP~LarG~-l~~IgaTT~~Eyrk  321 (853)
T Consensus       138 ~l~l~set~le~Il~~i~~~k-P~~lIIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVG---------  207 (372)
T cd01121         138 NLYLLAETNLEDILASIEELK-PDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG---------  207 (372)
T ss_pred             CCEEEECCCHHHHHHHHHHHC-CCEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE---------
T ss_conf             727884356999999999719-9889995622020377677998789999999999999986197399998---------


Q ss_pred             HHHCCHH------HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCCC
Q ss_conf             7300111------320231111157776789999999789865414961---015899999863332024576
Q gi|254780877|r  322 YIEKDPA------LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVR---ISDSALVSAAVLSNRYITDRF  385 (853)
Q Consensus       322 ~iEkD~A------l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~---i~d~al~~av~ls~rYi~~r~  385 (853)
T Consensus       208 HVTK~G~iAGPkvLEHmVDtVl~fEgd~~~~~R~LR~~KNRFG~t~EiGvFeM~~~GL~~V~nPS~~Fl~~~~  280 (372)
T cd01121         208 HVTKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSERE  280 (372)
T ss_pred             EECCCCCCCCCHHHEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCC
T ss_conf             7626886377403100213688751577655035674115677754058887316870563685698862698