HHsearch alignment for GI: 254780877 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.62 E-value=0.13 Score=31.99 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 689528874077799999998734
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIIN 225 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~ 225 (853)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 158768999999999999999987