HHsearch alignment for GI: 254780877 and conserved domain: cd01131
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.22 E-value=0.0011 Score=48.82 Aligned_cols=94 Identities=26% Similarity=0.516 Sum_probs=64.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCC-CCCCCCC-CHHHHCCCCCCCHH----HCCCCHHCCCCCCCCCCHHHHCCCCC
Q ss_conf 289872678616889999999872377-6530022-44774034532013----04771120356677421132215641
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDD-ENSMIRI-DMSEYMEKHSVSRL----IGSPPGYVGYEEGGALTEAVRRHPYQ 672 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~-~~~lir~-dMsey~e~~~vs~L----iGappGYvG~~~gg~Lte~vr~~P~s 672 (853)
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~e~g~~--~~sf~~--~lr~aLR~~P-D 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLD--TLSFEN--ALKAALRQDP-D 76 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEECCCCCC--CCCHHH--HHHHHHHHCC-C
T ss_conf 3899989999979999999998536378836999647377523676448873330788--637999--9999985488-8
Q ss_pred EEEEHHHHHCCHHHHHHHHHHHHCCEE
Q ss_conf 022021441498999999998404578
Q gi|254780877|r 673 VVLFDEIEKAHSDVHNILLQVLDDGRL 699 (853)
Q Consensus 673 Vil~DEiEKah~~v~~~llqild~G~l 699 (853)
T Consensus 77 vI~vGEiR--d~et~~~al~aa~TGHl 101 (198)
T cd01131 77 VILVGEMR--DLETIRLALTAAETGHL 101 (198)
T ss_pred EEECCCCC--CHHHHHHHHHHHHCCCE
T ss_conf 57527778--99999999999971993