Query gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 853
No_of_seqs 202 out of 3669
Neff 6.0
Searched_HMMs 39220
Date Mon May 30 02:48:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780877.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10865 protein disaggregatio 100.0 0 0 2037.2 92.2 850 1-850 1-855 (857)
2 TIGR03346 chaperone_ClpB ATP-d 100.0 0 0 2029.3 90.5 845 6-850 1-852 (852)
3 TIGR02639 ClpA ATP-dependent C 100.0 0 0 2020.2 54.9 728 6-843 1-774 (774)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 0 0 1953.8 87.2 821 6-843 1-850 (852)
5 CHL00095 clpC Clp protease ATP 100.0 0 0 1931.4 82.1 787 3-851 2-812 (823)
6 COG0542 clpA ATP-binding subun 100.0 0 0 1922.1 80.0 773 5-852 1-783 (786)
7 PRK11034 clpA ATP-dependent Cl 100.0 0 0 1803.9 74.8 723 6-852 2-746 (758)
8 KOG1051 consensus 100.0 0 0 1424.4 50.3 827 2-848 8-857 (898)
9 pfam07724 AAA_2 AAA domain (Cd 100.0 0 0 411.5 12.7 160 596-755 1-168 (168)
10 PRK10787 DNA-binding ATP-depen 100.0 6.3E-26 1.6E-30 229.7 29.8 436 324-832 105-563 (784)
11 TIGR00763 lon ATP-dependent pr 100.0 2.7E-27 6.9E-32 240.8 22.0 252 538-831 380-668 (941)
12 COG0466 Lon ATP-dependent Lon 99.9 1.3E-23 3.2E-28 211.0 30.7 442 323-834 104-567 (782)
13 PRK05342 clpX ATP-dependent pr 99.9 3.9E-23 9.8E-28 207.0 17.7 251 561-826 65-381 (411)
14 TIGR00382 clpX ATP-dependent C 99.9 1.5E-22 3.7E-27 202.3 13.5 264 561-842 94-439 (452)
15 KOG2004 consensus 99.9 4.8E-19 1.2E-23 173.8 28.9 249 542-832 385-653 (906)
16 PRK05201 hslU ATP-dependent pr 99.9 7.7E-20 2E-24 180.2 18.2 151 671-842 249-420 (442)
17 COG1219 ClpX ATP-dependent pro 99.9 1.5E-19 3.9E-24 177.8 17.5 264 561-842 54-383 (408)
18 KOG0730 consensus 99.8 4.7E-18 1.2E-22 165.7 23.8 405 197-819 216-648 (693)
19 KOG0733 consensus 99.8 7.6E-17 1.9E-21 155.9 23.9 506 179-829 191-739 (802)
20 KOG0745 consensus 99.8 1.7E-17 4.4E-22 161.1 16.6 209 600-824 228-509 (564)
21 TIGR01243 CDC48 AAA family ATP 99.8 6E-14 1.5E-18 132.3 33.3 463 192-774 233-724 (980)
22 KOG0736 consensus 99.7 5E-13 1.3E-17 124.8 28.7 160 174-355 398-577 (953)
23 PRK13342 recombination factor 99.7 4.9E-15 1.3E-19 141.1 16.3 195 168-398 3-203 (417)
24 COG0464 SpoVK ATPases of the A 99.7 4.8E-13 1.2E-17 125.0 24.4 178 596-827 274-466 (494)
25 CHL00195 ycf46 Ycf46; Provisio 99.6 7.3E-13 1.9E-17 123.5 22.5 139 588-777 253-408 (491)
26 KOG2170 consensus 99.6 3E-14 7.7E-19 134.8 13.1 218 559-801 73-318 (344)
27 TIGR00390 hslU heat shock prot 99.6 7.9E-14 2E-18 131.4 14.7 259 564-843 8-442 (463)
28 PRK13341 recombination factor 99.6 1E-13 2.6E-18 130.5 15.1 181 180-399 36-223 (726)
29 PRK10923 glnG nitrogen regulat 99.6 1.2E-11 3E-16 113.7 25.2 224 569-821 139-369 (469)
30 KOG0735 consensus 99.6 7.8E-11 2E-15 107.0 29.3 148 196-355 428-587 (952)
31 PRK11361 acetoacetate metaboli 99.6 3.1E-11 7.9E-16 110.3 26.0 219 569-821 144-374 (457)
32 pfam05496 RuvB_N Holliday junc 99.6 6.7E-13 1.7E-17 123.8 16.4 195 567-819 23-225 (234)
33 pfam05496 RuvB_N Holliday junc 99.5 4.1E-13 1E-17 125.6 13.9 193 168-405 14-233 (234)
34 PRK10365 transcriptional regul 99.5 4E-11 1E-15 109.4 23.4 220 569-821 140-370 (441)
35 pfam10431 ClpB_D2-small C-term 99.5 4.6E-13 1.2E-17 125.1 11.9 85 761-845 1-85 (89)
36 COG1220 HslU ATP-dependent pro 99.5 3.9E-12 1E-16 117.6 16.2 96 744-843 319-423 (444)
37 PRK13342 recombination factor 99.5 4.9E-12 1.2E-16 116.8 14.7 184 568-819 13-202 (417)
38 PRK12402 replication factor C 99.4 4.3E-12 1.1E-16 117.2 12.8 208 169-400 6-232 (337)
39 COG2256 MGS1 ATPase related to 99.4 4.5E-12 1.2E-16 117.1 12.6 193 167-398 13-217 (436)
40 KOG0741 consensus 99.4 1.7E-11 4.3E-16 112.4 14.9 195 161-380 226-439 (744)
41 pfam07728 AAA_5 AAA domain (dy 99.4 1E-12 2.6E-17 122.3 8.7 113 601-721 2-124 (139)
42 CHL00181 cbbX CbbX; Provisiona 99.4 3.9E-11 1E-15 109.4 16.7 163 201-376 61-227 (287)
43 PRK11608 pspF phage shock prot 99.4 1.9E-11 4.9E-16 112.0 14.0 229 566-821 4-238 (325)
44 PRK03992 proteasome-activating 99.4 5.3E-12 1.4E-16 116.5 11.2 198 567-824 131-354 (390)
45 CHL00195 ycf46 Ycf46; Provisio 99.4 7E-10 1.8E-14 99.3 21.9 139 201-357 261-408 (491)
46 CHL00181 cbbX CbbX; Provisiona 99.4 1.4E-10 3.6E-15 104.9 17.8 230 555-830 10-261 (287)
47 PRK05022 anaerobic nitric oxid 99.4 5.2E-11 1.3E-15 108.4 15.1 218 568-821 186-417 (510)
48 PRK11388 DNA-binding transcrip 99.4 8.3E-11 2.1E-15 106.8 15.7 223 568-820 325-551 (639)
49 COG0714 MoxR-like ATPases [Gen 99.3 1.2E-11 3.1E-16 113.5 10.7 205 560-801 16-246 (329)
50 PRK03992 proteasome-activating 99.3 4.4E-10 1.1E-14 100.9 18.5 141 197-355 164-317 (390)
51 PRK06674 DNA polymerase III su 99.3 8.7E-11 2.2E-15 106.6 14.0 203 168-401 6-228 (563)
52 PRK00440 rfc replication facto 99.3 1.5E-11 3.9E-16 112.7 10.0 197 169-399 7-208 (318)
53 PRK06647 DNA polymerase III su 99.3 9.9E-11 2.5E-15 106.2 14.0 203 168-401 6-228 (560)
54 PRK06305 DNA polymerase III su 99.3 9.2E-11 2.3E-15 106.4 13.7 203 168-401 7-230 (462)
55 PRK10820 DNA-binding transcrip 99.3 2.8E-10 7.2E-15 102.5 16.0 222 567-821 203-428 (513)
56 PRK05896 DNA polymerase III su 99.3 1.1E-10 2.9E-15 105.7 13.9 204 167-401 5-228 (613)
57 PRK13341 recombination factor 99.3 5.1E-11 1.3E-15 108.5 12.1 92 5-104 3-110 (726)
58 TIGR03346 chaperone_ClpB ATP-d 99.3 1.3E-07 3.3E-12 80.8 29.4 61 83-143 1-62 (852)
59 PRK10865 protein disaggregatio 99.3 1.1E-07 2.9E-12 81.3 29.1 136 82-222 5-143 (857)
60 COG2204 AtoC Response regulato 99.3 1.2E-08 3E-13 89.3 23.5 222 566-821 139-372 (464)
61 COG5271 MDN1 AAA ATPase contai 99.3 3E-11 7.7E-16 110.3 10.2 154 595-777 1543-1706(4600)
62 PRK07270 DNA polymerase III su 99.3 1.9E-10 4.7E-15 103.9 13.9 204 167-401 4-227 (557)
63 PRK08451 DNA polymerase III su 99.3 1.5E-10 3.8E-15 104.7 13.3 204 168-402 4-227 (523)
64 CHL00176 ftsH cell division pr 99.3 2E-09 5.2E-14 95.5 19.0 160 176-353 175-359 (631)
65 CHL00095 clpC Clp protease ATP 99.3 6.4E-07 1.6E-11 75.2 30.7 191 5-205 79-276 (823)
66 PRK05563 DNA polymerase III su 99.3 2.3E-10 6E-15 103.1 13.0 202 168-400 6-227 (541)
67 PRK00080 ruvB Holliday junctio 99.3 2.4E-10 6.1E-15 103.1 13.0 197 564-815 21-226 (328)
68 cd00009 AAA The AAA+ (ATPases 99.3 3E-11 7.7E-16 110.4 8.4 149 572-759 2-150 (151)
69 COG1221 PspF Transcriptional r 99.2 7.1E-10 1.8E-14 99.2 14.8 222 563-822 73-308 (403)
70 PRK07940 DNA polymerase III su 99.2 2.1E-10 5.3E-15 103.5 11.5 125 568-697 5-147 (395)
71 PRK04195 replication factor C 99.2 1E-10 2.5E-15 106.2 9.8 181 169-379 5-195 (403)
72 TIGR03345 VI_ClpV1 type VI sec 99.2 1.3E-07 3.3E-12 80.8 25.6 66 83-148 1-67 (852)
73 PRK00411 cdc6 cell division co 99.2 4.3E-08 1.1E-12 84.7 23.1 208 178-400 30-261 (394)
74 PRK05564 DNA polymerase III su 99.2 1.1E-10 2.9E-15 105.7 9.8 185 177-396 3-193 (313)
75 pfam00158 Sigma54_activat Sigm 99.2 1.9E-10 4.9E-15 103.8 11.0 162 570-757 1-166 (168)
76 PRK10733 hflB ATP-dependent me 99.2 4.4E-09 1.1E-13 92.8 17.9 159 176-352 150-333 (644)
77 PRK07133 DNA polymerase III su 99.2 8.2E-10 2.1E-14 98.7 14.1 203 168-401 8-227 (718)
78 TIGR02902 spore_lonB ATP-depen 99.2 3.7E-10 9.4E-15 101.5 12.2 206 567-817 64-306 (532)
79 PRK07764 DNA polymerase III su 99.2 6.8E-10 1.7E-14 99.4 13.3 203 168-401 5-229 (775)
80 pfam07726 AAA_3 ATPase family 99.2 9.3E-11 2.4E-15 106.4 8.2 108 601-720 2-112 (131)
81 PRK09112 DNA polymerase III su 99.2 2.3E-10 5.9E-15 103.2 10.2 166 567-772 22-211 (352)
82 COG2256 MGS1 ATPase related to 99.2 1.9E-10 4.9E-15 103.9 9.6 188 568-818 24-215 (436)
83 PRK08853 DNA polymerase III su 99.2 7.2E-10 1.8E-14 99.2 12.1 203 168-401 6-228 (717)
84 TIGR02397 dnaX_nterm DNA polym 99.2 7.1E-10 1.8E-14 99.2 12.1 192 568-818 14-220 (363)
85 PRK00440 rfc replication facto 99.2 3.1E-09 7.9E-14 94.0 15.0 175 568-802 16-192 (318)
86 COG0464 SpoVK ATPases of the A 99.2 7E-09 1.8E-13 91.1 16.6 142 197-356 274-425 (494)
87 pfam00004 AAA ATPase family as 99.2 4.8E-10 1.2E-14 100.6 10.4 118 202-337 1-127 (131)
88 cd00009 AAA The AAA+ (ATPases 99.2 3.9E-10 1E-14 101.3 9.8 141 181-335 1-145 (151)
89 PRK07471 DNA polymerase III su 99.1 1.1E-09 2.8E-14 97.7 11.9 165 567-771 16-208 (363)
90 COG5271 MDN1 AAA ATPase contai 99.1 1.4E-06 3.6E-11 72.4 27.7 143 595-770 888-1043(4600)
91 PRK06645 DNA polymerase III su 99.1 2.5E-09 6.4E-14 94.8 13.5 202 169-401 12-237 (507)
92 PRK13407 bchI magnesium chelat 99.1 4.7E-09 1.2E-13 92.5 14.9 217 568-816 8-279 (334)
93 PRK11034 clpA ATP-dependent Cl 99.1 1.2E-06 3E-11 73.0 27.1 63 5-67 79-141 (758)
94 PRK12402 replication factor C 99.1 3E-09 7.7E-14 94.1 13.8 184 568-802 15-216 (337)
95 COG0542 clpA ATP-binding subun 99.1 2.6E-06 6.5E-11 70.3 28.5 189 5-205 73-267 (786)
96 PRK08691 DNA polymerase III su 99.1 2.4E-09 6E-14 95.0 12.8 203 168-402 6-229 (704)
97 KOG0989 consensus 99.1 4.7E-09 1.2E-13 92.5 14.1 176 567-802 35-220 (346)
98 PRK07994 DNA polymerase III su 99.1 2.6E-09 6.7E-14 94.6 11.9 204 168-402 6-229 (643)
99 PRK04195 replication factor C 99.1 1.5E-09 3.9E-14 96.5 10.1 176 568-802 14-193 (403)
100 PRK07003 DNA polymerase III su 99.1 3.2E-09 8.2E-14 93.9 11.8 203 168-402 6-229 (816)
101 KOG2028 consensus 99.1 2E-09 5.1E-14 95.5 10.7 188 167-378 127-327 (554)
102 PRK05563 DNA polymerase III su 99.1 3.5E-08 9E-13 85.4 17.0 46 669-718 425-475 (541)
103 PRK09111 DNA polymerase III su 99.1 1.2E-08 3E-13 89.3 14.4 199 170-400 15-239 (600)
104 TIGR02928 TIGR02928 orc1/cdc6 99.1 1.9E-07 4.8E-12 79.5 20.4 215 179-404 18-271 (383)
105 pfam00004 AAA ATPase family as 99.1 3.4E-10 8.6E-15 101.9 6.2 115 601-759 1-130 (131)
106 PRK10733 hflB ATP-dependent me 99.1 1.9E-09 4.8E-14 95.8 10.0 164 567-776 151-337 (644)
107 TIGR02903 spore_lon_C ATP-depe 99.1 2.5E-09 6.4E-14 94.8 10.6 227 567-845 154-423 (616)
108 COG1223 Predicted ATPase (AAA+ 99.1 3.3E-09 8.4E-14 93.8 11.1 201 567-831 120-339 (368)
109 CHL00176 ftsH cell division pr 99.0 2.5E-09 6.3E-14 94.8 10.3 163 567-776 176-362 (631)
110 TIGR02902 spore_lonB ATP-depen 99.0 2.2E-09 5.5E-14 95.3 9.7 214 165-403 52-314 (532)
111 pfam01078 Mg_chelatase Magnesi 99.0 3.6E-09 9.1E-14 93.5 10.8 180 568-766 3-207 (207)
112 COG1222 RPT1 ATP-dependent 26S 99.0 4.3E-09 1.1E-13 92.8 11.1 162 568-776 151-337 (406)
113 CHL00081 chlI Mg-protoporyphyr 99.0 2.2E-08 5.6E-13 87.1 14.4 210 568-812 12-283 (347)
114 PRK00411 cdc6 cell division co 99.0 1.6E-08 4.1E-13 88.2 13.5 209 567-811 29-250 (394)
115 PRK07399 DNA polymerase III su 99.0 8.3E-09 2.1E-13 90.5 11.9 166 567-773 3-194 (314)
116 COG3604 FhlA Transcriptional r 99.0 5.4E-08 1.4E-12 83.9 15.1 216 568-821 223-454 (550)
117 PRK00080 ruvB Holliday junctio 99.0 7.3E-08 1.9E-12 82.9 15.7 187 172-403 19-232 (328)
118 PRK12323 DNA polymerase III su 99.0 1.4E-08 3.5E-13 88.8 11.6 203 168-402 6-234 (721)
119 KOG0740 consensus 99.0 2.1E-08 5.3E-13 87.3 12.3 166 195-383 182-358 (428)
120 KOG0738 consensus 99.0 7.3E-08 1.9E-12 82.9 14.9 166 172-355 206-396 (491)
121 PRK05648 DNA polymerase III su 98.9 2.5E-08 6.3E-13 86.7 12.0 200 169-401 7-228 (705)
122 TIGR02640 gas_vesic_GvpN gas v 98.9 2.9E-09 7.5E-14 94.2 7.1 129 572-719 2-159 (265)
123 pfam01637 Arch_ATPase Archaeal 98.9 4.6E-07 1.2E-11 76.4 18.3 189 180-378 1-214 (223)
124 TIGR00635 ruvB Holliday juncti 98.9 1.9E-08 4.8E-13 87.6 11.1 176 568-802 4-191 (305)
125 PRK08770 DNA polymerase III su 98.9 2.4E-08 6E-13 86.8 11.3 203 168-402 6-229 (663)
126 TIGR00635 ruvB Holliday juncti 98.9 8.9E-09 2.3E-13 90.3 8.8 160 176-376 2-190 (305)
127 TIGR01241 FtsH_fam ATP-depende 98.9 2.4E-09 6.2E-14 94.8 5.9 160 177-355 58-244 (505)
128 COG2255 RuvB Holliday junction 98.9 5.5E-08 1.4E-12 83.9 12.7 176 174-394 22-224 (332)
129 PRK06872 DNA polymerase III su 98.9 4.8E-08 1.2E-12 84.3 12.0 201 169-401 7-228 (696)
130 KOG0730 consensus 98.9 9.1E-08 2.3E-12 82.1 13.4 159 180-357 435-618 (693)
131 PRK07270 DNA polymerase III su 98.9 4.4E-07 1.1E-11 76.5 16.8 116 229-373 113-240 (557)
132 PRK08058 DNA polymerase III su 98.9 5.4E-08 1.4E-12 83.9 11.9 182 178-396 5-207 (329)
133 pfam06068 TIP49 TIP49 C-termin 98.9 6.1E-08 1.6E-12 83.5 12.0 103 672-804 277-379 (395)
134 TIGR03420 DnaA_homol_Hda DnaA 98.9 3.9E-07 1E-11 76.9 15.5 160 601-818 41-204 (226)
135 PRK06647 DNA polymerase III su 98.8 9.4E-07 2.4E-11 73.8 17.2 23 673-695 122-144 (560)
136 PRK06674 DNA polymerase III su 98.8 1.4E-06 3.6E-11 72.5 17.7 115 230-375 115-242 (563)
137 PRK06645 DNA polymerase III su 98.8 1.2E-06 3.1E-11 72.9 17.0 199 567-818 20-232 (507)
138 PRK06305 DNA polymerase III su 98.8 1.5E-06 3.7E-11 72.3 17.2 192 567-818 16-225 (462)
139 TIGR01241 FtsH_fam ATP-depende 98.8 1E-07 2.7E-12 81.6 11.2 194 567-817 58-274 (505)
140 PRK09862 putative ATP-dependen 98.8 5.3E-07 1.4E-11 75.8 14.3 227 568-817 191-466 (506)
141 PRK08451 DNA polymerase III su 98.8 1.7E-06 4.3E-11 71.8 16.5 125 568-719 14-155 (523)
142 COG1474 CDC6 Cdc6-related prot 98.8 6.9E-06 1.8E-10 66.8 19.5 207 180-402 19-246 (366)
143 PRK05896 DNA polymerase III su 98.8 1.8E-06 4.7E-11 71.5 16.5 58 705-772 511-570 (613)
144 TIGR02928 TIGR02928 orc1/cdc6 98.8 5.8E-08 1.5E-12 83.7 8.7 219 566-818 13-263 (383)
145 COG1474 CDC6 Cdc6-related prot 98.8 2.4E-07 6.1E-12 78.6 11.8 199 566-801 15-223 (366)
146 TIGR03420 DnaA_homol_Hda DnaA 98.7 5.7E-07 1.5E-11 75.6 13.5 173 180-380 18-194 (226)
147 PRK07003 DNA polymerase III su 98.7 3.6E-06 9.1E-11 69.1 17.4 194 102-321 15-239 (816)
148 COG0714 MoxR-like ATPases [Gen 98.7 1.2E-06 2.9E-11 73.1 14.5 152 179-350 25-198 (329)
149 KOG0734 consensus 98.7 4.3E-07 1.1E-11 76.6 12.4 155 174-351 300-481 (752)
150 TIGR02903 spore_lon_C ATP-depe 98.7 5.5E-07 1.4E-11 75.7 12.8 205 172-403 149-405 (616)
151 KOG0733 consensus 98.7 2.2E-06 5.7E-11 70.8 15.8 215 114-355 463-693 (802)
152 PRK04132 replication factor C 98.7 1.9E-08 4.8E-13 87.7 4.9 54 170-223 17-70 (863)
153 TIGR03015 pepcterm_ATPase puta 98.7 5.2E-06 1.3E-10 67.8 17.2 188 184-380 28-231 (269)
154 PRK07133 DNA polymerase III su 98.7 5.2E-06 1.3E-10 67.8 17.1 46 230-283 114-161 (718)
155 COG2255 RuvB Holliday junction 98.7 5.7E-07 1.4E-11 75.6 11.8 199 562-816 20-228 (332)
156 COG3829 RocR Transcriptional r 98.7 2.6E-06 6.7E-11 70.2 15.1 217 568-821 245-477 (560)
157 PRK08853 DNA polymerase III su 98.7 2E-06 5.1E-11 71.2 14.4 195 102-321 15-239 (717)
158 KOG0727 consensus 98.7 6.9E-07 1.8E-11 74.9 11.9 141 588-770 183-334 (408)
159 TIGR01817 nifA Nif-specific re 98.7 1.2E-06 3.1E-11 72.9 12.9 215 567-819 211-441 (574)
160 PRK00149 dnaA chromosomal repl 98.7 6.5E-06 1.6E-10 67.0 16.6 173 180-374 122-306 (447)
161 COG2812 DnaX DNA polymerase II 98.7 1.9E-07 4.8E-12 79.5 8.7 200 169-401 7-228 (515)
162 PRK05642 DNA replication initi 98.6 4.8E-06 1.2E-10 68.1 15.7 157 600-818 47-211 (234)
163 KOG0736 consensus 98.6 1.4E-06 3.6E-11 72.4 12.9 221 522-809 632-882 (953)
164 pfam05621 TniB Bacterial TniB 98.6 2.5E-07 6.3E-12 78.6 8.9 157 187-350 46-222 (302)
165 COG1222 RPT1 ATP-dependent 26S 98.6 2.9E-06 7.3E-11 69.9 13.8 160 180-358 153-339 (406)
166 TIGR01242 26Sp45 26S proteasom 98.6 1.4E-07 3.5E-12 80.6 7.1 160 567-774 121-306 (364)
167 KOG0731 consensus 98.6 2.9E-07 7.4E-12 78.0 8.7 159 177-353 310-494 (774)
168 PRK05342 clpX ATP-dependent pr 98.6 2E-06 5E-11 71.3 12.9 87 198-296 108-200 (411)
169 COG1224 TIP49 DNA helicase TIP 98.6 1.6E-06 4E-11 72.0 12.3 111 672-817 293-403 (450)
170 PRK05564 DNA polymerase III su 98.6 0.0001 2.6E-09 57.3 21.5 157 568-773 4-164 (313)
171 KOG2028 consensus 98.6 2.5E-07 6.4E-12 78.5 8.0 225 526-816 109-337 (554)
172 PRK08084 DNA replication initi 98.6 7.7E-06 2E-10 66.4 15.6 157 601-818 48-212 (235)
173 COG0470 HolB ATPase involved i 98.6 7.1E-07 1.8E-11 74.8 10.2 181 179-392 2-204 (325)
174 pfam00493 MCM MCM2/3/5 family. 98.6 4.3E-06 1.1E-10 68.5 14.2 218 559-801 15-269 (327)
175 pfam06309 Torsin Torsin. This 98.6 1.6E-07 4E-12 80.2 6.8 71 559-631 16-88 (127)
176 PRK13765 ATP-dependent proteas 98.6 1.4E-06 3.5E-11 72.5 11.3 49 174-224 27-75 (637)
177 PRK12422 chromosomal replicati 98.6 7.3E-05 1.9E-09 58.5 20.0 172 179-374 113-300 (455)
178 PRK08769 DNA polymerase III su 98.6 9E-07 2.3E-11 74.0 10.2 185 185-400 11-215 (319)
179 PRK13531 regulatory ATPase Rav 98.6 4E-07 1E-11 76.9 8.3 101 161-281 7-117 (498)
180 PRK09111 DNA polymerase III su 98.6 1.8E-05 4.7E-10 63.4 16.8 129 230-397 127-268 (600)
181 PRK08116 hypothetical protein; 98.6 4.2E-07 1.1E-11 76.7 8.2 149 600-781 110-261 (262)
182 PRK11331 5-methylcytosine-spec 98.6 1.3E-05 3.3E-10 64.6 15.7 215 596-830 194-443 (459)
183 COG1223 Predicted ATPase (AAA+ 98.5 2.3E-06 5.8E-11 70.7 11.8 169 169-356 112-299 (368)
184 COG0606 Predicted ATPase with 98.5 3.1E-06 7.9E-11 69.6 12.3 261 529-818 140-446 (490)
185 pfam00308 Bac_DnaA Bacterial d 98.5 5.2E-06 1.3E-10 67.8 13.2 174 594-818 30-211 (219)
186 PRK12377 putative replication 98.5 4.6E-07 1.2E-11 76.4 7.8 105 598-724 101-209 (248)
187 PRK05642 DNA replication initi 98.5 1.2E-05 3E-10 64.9 15.0 186 180-397 22-215 (234)
188 KOG0735 consensus 98.5 2.5E-06 6.4E-11 70.4 11.4 157 570-773 669-847 (952)
189 PRK08903 hypothetical protein; 98.5 2.6E-06 6.6E-11 70.3 11.2 153 601-819 45-203 (227)
190 KOG0731 consensus 98.5 8.9E-06 2.3E-10 65.9 13.9 170 567-779 310-500 (774)
191 pfam00308 Bac_DnaA Bacterial d 98.5 1.4E-06 3.6E-11 72.4 9.8 198 180-401 11-216 (219)
192 PRK07132 DNA polymerase III su 98.5 3.9E-06 9.9E-11 68.8 11.7 132 202-351 23-161 (303)
193 PRK08084 DNA replication initi 98.5 4.4E-05 1.1E-09 60.3 17.0 189 180-399 25-218 (235)
194 TIGR02881 spore_V_K stage V sp 98.5 5.8E-06 1.5E-10 67.4 12.2 206 579-834 24-249 (261)
195 TIGR02397 dnaX_nterm DNA polym 98.5 3.3E-05 8.4E-10 61.3 16.0 200 171-402 7-226 (363)
196 PRK08691 DNA polymerase III su 98.5 5.9E-05 1.5E-09 59.2 17.2 43 103-145 16-63 (704)
197 smart00382 AAA ATPases associa 98.5 9.7E-08 2.5E-12 81.9 3.0 119 599-720 3-125 (148)
198 PRK10923 glnG nitrogen regulat 98.5 4.3E-06 1.1E-10 68.5 11.3 204 174-422 134-367 (469)
199 PRK13407 bchI magnesium chelat 98.5 2.6E-05 6.8E-10 62.1 15.4 150 180-352 10-214 (334)
200 pfam07728 AAA_5 AAA domain (dy 98.5 3E-07 7.7E-12 77.9 5.3 116 201-333 1-139 (139)
201 PRK08727 hypothetical protein; 98.4 2.2E-05 5.6E-10 62.7 14.7 169 600-830 43-229 (233)
202 PRK11608 pspF phage shock prot 98.4 1.2E-05 3.2E-10 64.7 13.2 204 174-422 2-236 (325)
203 PRK13531 regulatory ATPase Rav 98.4 0.00013 3.3E-09 56.5 18.3 34 380-415 247-280 (498)
204 TIGR01242 26Sp45 26S proteasom 98.4 4.4E-06 1.1E-10 68.4 10.6 138 201-357 158-309 (364)
205 PRK11361 acetoacetate metaboli 98.4 1.5E-05 3.7E-10 64.1 13.2 203 175-422 140-372 (457)
206 PRK06893 DNA replication initi 98.4 1.7E-05 4.4E-10 63.6 13.4 163 600-819 41-207 (229)
207 PRK12323 DNA polymerase III su 98.4 0.00012 3.1E-09 56.7 17.7 44 102-145 15-63 (721)
208 KOG0732 consensus 98.4 3.4E-06 8.7E-11 69.3 9.7 164 200-380 300-473 (1080)
209 CHL00081 chlI Mg-protoporyphyr 98.4 7.5E-05 1.9E-09 58.4 16.5 204 180-403 14-280 (347)
210 COG0593 DnaA ATPase involved i 98.4 0.00042 1.1E-08 52.3 20.3 155 198-376 112-275 (408)
211 KOG0744 consensus 98.4 3.7E-06 9.4E-11 69.0 9.7 144 590-780 172-346 (423)
212 PRK07952 DNA replication prote 98.4 1.6E-06 4E-11 72.1 7.8 107 598-727 96-208 (242)
213 pfam05673 DUF815 Protein of un 98.4 8.3E-05 2.1E-09 58.0 16.5 189 568-802 28-230 (248)
214 PRK07764 DNA polymerase III su 98.4 0.0001 2.7E-09 57.2 16.9 121 567-698 14-148 (775)
215 KOG0728 consensus 98.4 2.9E-06 7.4E-11 69.9 8.8 150 589-788 176-342 (404)
216 KOG0739 consensus 98.4 5.9E-06 1.5E-10 67.4 10.1 132 192-342 157-300 (439)
217 PRK08727 hypothetical protein; 98.4 8.3E-05 2.1E-09 58.0 15.9 188 180-398 22-212 (233)
218 TIGR02974 phageshock_pspF psp 98.4 2.2E-05 5.6E-10 62.7 13.0 219 570-822 1-232 (349)
219 KOG0737 consensus 98.4 3.8E-06 9.6E-11 68.9 9.0 140 198-356 126-276 (386)
220 PRK07994 DNA polymerase III su 98.4 0.00019 4.8E-09 55.1 17.6 45 102-146 15-64 (643)
221 PRK10787 DNA-binding ATP-depen 98.3 2E-05 5.1E-10 63.0 12.5 174 180-375 324-533 (784)
222 TIGR00368 TIGR00368 Mg chelata 98.3 1E-06 2.6E-11 73.6 5.6 219 568-816 194-478 (505)
223 PRK05648 DNA polymerase III su 98.3 0.0002 5E-09 55.0 16.9 44 102-145 15-63 (705)
224 pfam00493 MCM MCM2/3/5 family. 98.3 0.00036 9.2E-09 52.8 18.1 176 197-396 55-268 (327)
225 PRK06893 DNA replication initi 98.3 0.00017 4.3E-09 55.5 16.3 187 180-398 19-211 (229)
226 COG0465 HflB ATP-dependent Zn 98.3 4.8E-05 1.2E-09 60.0 13.2 158 176-351 148-330 (596)
227 COG0466 Lon ATP-dependent Lon 98.3 2.4E-05 6.1E-10 62.4 11.6 175 180-376 325-536 (782)
228 PRK08770 DNA polymerase III su 98.3 0.00039 9.9E-09 52.6 17.5 45 102-146 15-64 (663)
229 PRK11331 5-methylcytosine-spec 98.3 3.2E-05 8.1E-10 61.4 11.8 148 184-340 181-357 (459)
230 KOG0989 consensus 98.3 6E-05 1.5E-09 59.1 13.2 204 166-397 24-234 (346)
231 KOG0737 consensus 98.2 8E-06 2E-10 66.3 8.6 165 555-774 93-274 (386)
232 pfam06068 TIP49 TIP49 C-termin 98.2 8.9E-05 2.3E-09 57.8 13.9 45 200-245 51-96 (395)
233 PRK05201 hslU ATP-dependent pr 98.2 5.6E-05 1.4E-09 59.4 12.9 72 564-639 11-88 (442)
234 KOG1942 consensus 98.2 4.3E-05 1.1E-09 60.4 12.2 118 672-825 298-415 (456)
235 COG3283 TyrR Transcriptional r 98.2 0.00011 2.8E-09 57.0 14.2 219 568-820 204-429 (511)
236 smart00382 AAA ATPases associa 98.2 9.5E-06 2.4E-10 65.7 8.7 128 199-338 2-143 (148)
237 PRK06835 DNA replication prote 98.2 7.8E-06 2E-10 66.4 8.1 145 575-746 163-311 (330)
238 PRK08903 hypothetical protein; 98.2 0.00015 3.7E-09 56.0 14.6 181 180-398 21-207 (227)
239 pfam02861 Clp_N Clp amino term 98.2 3.4E-06 8.6E-11 69.3 6.2 52 17-68 1-52 (53)
240 PHA02244 ATPase-like protein 98.2 9.4E-05 2.4E-09 57.6 13.5 114 592-720 116-230 (383)
241 TIGR00763 lon ATP-dependent pr 98.2 1.7E-05 4.3E-10 63.6 9.7 159 199-376 447-640 (941)
242 PRK09183 transposase/IS protei 98.2 4.7E-06 1.2E-10 68.2 6.8 117 600-739 103-226 (258)
243 PRK05917 DNA polymerase III su 98.2 7E-06 1.8E-10 66.8 7.6 105 574-697 3-122 (290)
244 TIGR02880 cbbX_cfxQ CbbX prote 98.2 0.00017 4.4E-09 55.4 14.7 196 586-828 47-258 (284)
245 COG1239 ChlI Mg-chelatase subu 98.2 5.1E-05 1.3E-09 59.8 11.9 205 566-804 15-282 (423)
246 PRK06872 DNA polymerase III su 98.2 0.00053 1.3E-08 51.5 17.0 46 102-147 15-65 (696)
247 COG1219 ClpX ATP-dependent pro 98.2 8E-05 2E-09 58.2 12.8 76 197-284 95-175 (408)
248 COG1484 DnaC DNA replication p 98.2 3.1E-06 7.9E-11 69.6 5.5 101 599-723 106-211 (254)
249 PRK12422 chromosomal replicati 98.2 6.4E-05 1.6E-09 58.9 12.1 208 564-819 108-317 (455)
250 KOG0738 consensus 98.2 8.9E-06 2.3E-10 65.9 7.6 109 569-695 213-341 (491)
251 pfam03215 Rad17 Rad17 cell cyc 98.2 0.00015 3.7E-09 56.0 13.7 142 156-307 5-160 (490)
252 TIGR01243 CDC48 AAA family ATP 98.2 6.1E-05 1.5E-09 59.1 11.7 291 22-352 410-722 (980)
253 COG1224 TIP49 DNA helicase TIP 98.2 0.00022 5.7E-09 54.5 14.6 66 178-245 39-111 (450)
254 PRK09112 DNA polymerase III su 98.2 0.0003 7.6E-09 53.5 15.1 199 178-400 23-248 (352)
255 COG0465 HflB ATP-dependent Zn 98.2 5.1E-05 1.3E-09 59.7 11.1 110 567-695 149-278 (596)
256 pfam08298 AAA_PrkA PrkA AAA do 98.2 0.0001 2.7E-09 57.2 12.7 108 672-800 235-344 (358)
257 KOG2004 consensus 98.1 0.00011 2.8E-09 57.1 12.7 184 171-374 403-622 (906)
258 pfam01078 Mg_chelatase Magnesi 98.1 3.3E-05 8.3E-10 61.3 9.8 111 180-310 5-137 (207)
259 PRK11388 DNA-binding transcrip 98.1 7.3E-05 1.9E-09 58.5 11.4 201 176-421 323-549 (639)
260 PRK10820 DNA-binding transcrip 98.1 0.00017 4.4E-09 55.5 13.1 199 174-421 200-425 (513)
261 PRK05707 DNA polymerase III su 98.1 2E-05 5.2E-10 63.0 8.3 162 201-396 24-206 (328)
262 PRK00149 dnaA chromosomal repl 98.1 7.1E-05 1.8E-09 58.6 11.1 198 565-819 117-323 (447)
263 pfam07726 AAA_3 ATPase family 98.1 2.7E-06 7E-11 70.1 3.7 110 201-334 1-130 (131)
264 PRK05022 anaerobic nitric oxid 98.1 6.7E-05 1.7E-09 58.8 10.6 199 179-422 187-415 (510)
265 TIGR00678 holB DNA polymerase 98.1 4.1E-05 1.1E-09 60.5 9.4 143 596-773 12-192 (216)
266 PRK06526 transposase; Provisio 98.1 1.2E-05 3.1E-10 64.9 6.5 103 600-725 100-205 (254)
267 COG3284 AcoR Transcriptional a 98.1 0.00021 5.4E-09 54.7 12.8 214 571-819 316-536 (606)
268 KOG0743 consensus 98.1 4E-05 1E-09 60.6 9.0 172 600-820 237-435 (457)
269 COG2607 Predicted ATPase (AAA+ 98.1 0.0008 2E-08 50.0 15.6 168 570-774 62-239 (287)
270 PRK08939 primosomal protein Dn 98.1 5.8E-05 1.5E-09 59.3 9.7 127 575-727 139-268 (306)
271 PRK07471 DNA polymerase III su 98.1 0.0011 2.9E-08 48.8 16.3 193 179-398 18-242 (363)
272 COG0470 HolB ATPase involved i 98.0 0.00019 4.8E-09 55.1 12.3 124 569-720 2-148 (325)
273 KOG0734 consensus 98.0 5.2E-05 1.3E-09 59.7 9.3 126 568-720 304-448 (752)
274 TIGR01818 ntrC nitrogen regula 98.0 0.0012 3.2E-08 48.5 16.3 233 566-848 133-382 (471)
275 KOG0739 consensus 98.0 9.8E-05 2.5E-09 57.4 10.5 129 570-720 135-278 (439)
276 pfam01695 IstB IstB-like ATP b 98.0 1.6E-05 4.1E-10 63.8 6.3 104 600-726 49-155 (178)
277 PRK09087 hypothetical protein; 98.0 8.3E-05 2.1E-09 58.0 9.7 170 594-831 40-221 (226)
278 PRK09862 putative ATP-dependen 98.0 0.0005 1.3E-08 51.7 13.5 114 176-312 189-327 (506)
279 PRK08769 DNA polymerase III su 98.0 0.001 2.6E-08 49.2 15.1 150 573-770 9-181 (319)
280 TIGR00382 clpX ATP-dependent C 98.0 1.4E-05 3.5E-10 64.3 5.5 138 168-327 124-275 (452)
281 PRK06964 DNA polymerase III su 98.0 7E-05 1.8E-09 58.6 9.1 174 192-396 14-228 (342)
282 COG1241 MCM2 Predicted ATPase 98.0 0.00079 2E-08 50.1 14.3 243 561-836 279-583 (682)
283 KOG0726 consensus 98.0 7E-06 1.8E-10 66.7 3.8 161 569-774 186-369 (440)
284 COG2204 AtoC Response regulato 98.0 0.00023 5.9E-09 54.4 11.5 203 176-424 139-372 (464)
285 PRK08181 transposase; Validate 98.0 1.2E-05 3E-10 64.9 4.8 102 600-724 108-212 (269)
286 smart00350 MCM minichromosome 98.0 0.00036 9.3E-09 52.8 12.4 221 561-801 196-449 (509)
287 PRK07399 DNA polymerase III su 98.0 0.0035 9E-08 44.8 21.8 195 176-396 2-224 (314)
288 TIGR03015 pepcterm_ATPase puta 98.0 0.00044 1.1E-08 52.1 12.7 202 573-824 28-243 (269)
289 KOG0729 consensus 97.9 5.5E-05 1.4E-09 59.5 8.0 77 604-695 217-306 (435)
290 pfam05673 DUF815 Protein of un 97.9 0.00047 1.2E-08 51.9 12.7 114 177-315 27-149 (248)
291 PRK10365 transcriptional regul 97.9 9.7E-05 2.5E-09 57.5 9.0 200 178-422 139-368 (441)
292 smart00763 AAA_PrkA PrkA AAA d 97.9 0.00048 1.2E-08 51.8 12.3 107 672-799 238-346 (361)
293 TIGR02915 PEP_resp_reg putativ 97.9 0.00083 2.1E-08 49.9 13.4 218 568-821 142-373 (451)
294 KOG0652 consensus 97.9 0.00016 4.1E-09 55.7 9.7 155 570-774 173-355 (424)
295 PRK08699 DNA polymerase III su 97.9 6.7E-05 1.7E-09 58.8 7.5 141 197-351 19-182 (325)
296 KOG0744 consensus 97.9 0.00064 1.6E-08 50.8 12.2 150 202-356 180-342 (423)
297 COG1221 PspF Transcriptional r 97.9 0.00027 6.8E-09 53.9 10.1 152 174-345 74-251 (403)
298 PRK06921 hypothetical protein; 97.8 2.1E-05 5.3E-10 62.9 4.4 118 599-739 117-242 (265)
299 COG3854 SpoIIIAA ncharacterize 97.8 0.00028 7E-09 53.8 10.0 113 187-314 125-250 (308)
300 KOG0651 consensus 97.8 5.8E-05 1.5E-09 59.3 6.5 123 569-719 133-279 (388)
301 PRK06871 DNA polymerase III su 97.8 0.00017 4.4E-09 55.4 8.9 174 188-396 11-205 (324)
302 pfam07724 AAA_2 AAA domain (Cd 97.8 0.00011 2.7E-09 57.2 7.7 94 198-309 2-105 (168)
303 PRK07993 DNA polymerase III su 97.8 0.00018 4.5E-09 55.4 8.6 163 200-396 25-207 (334)
304 PRK07276 DNA polymerase III su 97.8 0.00048 1.2E-08 51.9 10.8 120 573-719 7-142 (290)
305 KOG0740 consensus 97.8 0.00054 1.4E-08 51.4 10.7 180 570-801 155-351 (428)
306 TIGR03499 FlhF flagellar biosy 97.8 0.0011 2.7E-08 49.0 12.0 77 599-677 195-279 (282)
307 PRK06090 DNA polymerase III su 97.7 0.00029 7.3E-09 53.6 8.9 163 198-396 24-204 (319)
308 COG3899 Predicted ATPase [Gene 97.7 0.00012 3.1E-09 56.6 7.0 49 179-227 1-52 (849)
309 KOG1969 consensus 97.7 0.00038 9.8E-09 52.6 9.5 88 180-281 306-397 (877)
310 TIGR02639 ClpA ATP-dependent C 97.7 0.00014 3.6E-09 56.2 7.2 178 570-802 210-409 (774)
311 PRK08058 DNA polymerase III su 97.7 0.0049 1.2E-07 43.6 15.0 162 568-770 5-178 (329)
312 pfam05729 NACHT NACHT domain. 97.7 0.0024 6.1E-08 46.1 13.5 140 202-350 3-158 (165)
313 COG0593 DnaA ATPase involved i 97.7 0.00062 1.6E-08 50.9 10.3 212 565-837 85-318 (408)
314 PRK00131 aroK shikimate kinase 97.7 0.0016 4.2E-08 47.5 12.1 145 197-365 2-151 (175)
315 COG1484 DnaC DNA replication p 97.7 0.00065 1.7E-08 50.8 10.0 112 198-324 104-218 (254)
316 KOG0991 consensus 97.7 0.00026 6.7E-09 54.0 7.9 181 169-380 18-207 (333)
317 PRK06620 hypothetical protein; 97.7 0.0012 3.1E-08 48.6 11.2 145 600-818 46-192 (214)
318 PRK08181 transposase; Validate 97.7 0.00017 4.3E-09 55.5 6.8 89 184-283 90-179 (269)
319 KOG0728 consensus 97.7 0.0026 6.6E-08 45.9 12.8 149 191-358 173-335 (404)
320 PRK05703 flhF flagellar biosyn 97.7 0.002 5.1E-08 46.8 12.2 90 595-686 207-304 (412)
321 TIGR02442 Cob-chelat-sub cobal 97.6 0.0054 1.4E-07 43.3 14.2 207 180-406 6-275 (688)
322 pfam01695 IstB IstB-like ATP b 97.6 0.00054 1.4E-08 51.4 8.9 70 197-280 45-117 (178)
323 pfam00437 GSPII_E Type II/IV s 97.6 7E-05 1.8E-09 58.6 4.3 95 598-699 139-235 (283)
324 KOG0729 consensus 97.6 0.001 2.5E-08 49.2 10.1 154 180-351 179-358 (435)
325 smart00350 MCM minichromosome 97.6 0.011 2.8E-07 40.8 18.0 190 177-397 201-449 (509)
326 pfam01637 Arch_ATPase Archaeal 97.6 0.0024 6.1E-08 46.2 12.0 187 571-800 2-211 (223)
327 KOG1808 consensus 97.6 0.00015 3.8E-09 56.0 5.5 27 202-228 443-469 (1856)
328 pfam07693 KAP_NTPase KAP famil 97.6 0.0065 1.6E-07 42.7 13.8 124 672-818 162-293 (301)
329 pfam00158 Sigma54_activat Sigm 97.5 0.00012 3E-09 56.8 4.5 118 180-317 1-144 (168)
330 PRK12377 putative replication 97.5 0.00038 9.6E-09 52.7 7.1 102 198-318 100-206 (248)
331 PRK06526 transposase; Provisio 97.5 0.00027 6.9E-09 53.8 6.3 87 186-283 85-171 (254)
332 KOG0991 consensus 97.5 0.0017 4.3E-08 47.4 10.2 121 567-724 26-156 (333)
333 KOG0745 consensus 97.5 0.0002 5.2E-09 54.8 5.4 118 197-339 224-353 (564)
334 PRK09183 transposase/IS protei 97.5 0.00031 7.8E-09 53.4 6.3 84 187-283 89-175 (258)
335 COG3829 RocR Transcriptional r 97.5 0.0019 4.9E-08 46.9 10.3 206 175-423 242-476 (560)
336 TIGR02915 PEP_resp_reg putativ 97.5 0.00052 1.3E-08 51.5 7.3 230 123-421 97-370 (451)
337 PRK06090 DNA polymerase III su 97.5 0.0089 2.3E-07 41.5 13.6 105 599-721 26-148 (319)
338 KOG0652 consensus 97.5 0.0036 9.1E-08 44.8 11.3 168 180-366 173-367 (424)
339 TIGR02881 spore_V_K stage V sp 97.5 0.01 2.6E-07 41.0 13.7 161 185-355 19-192 (261)
340 pfam00910 RNA_helicase RNA hel 97.5 0.0002 5.2E-09 54.9 4.9 95 602-720 2-105 (105)
341 KOG0742 consensus 97.5 0.017 4.3E-07 39.3 27.3 191 576-817 362-586 (630)
342 KOG0743 consensus 97.5 0.0011 2.8E-08 48.9 8.5 112 195-332 231-358 (457)
343 KOG2035 consensus 97.4 0.0016 4E-08 47.6 9.1 199 171-398 6-233 (351)
344 PRK06871 DNA polymerase III su 97.4 0.012 3E-07 40.6 13.5 106 598-719 23-144 (324)
345 COG2812 DnaX DNA polymerase II 97.4 0.019 4.7E-07 38.9 17.1 200 103-321 16-239 (515)
346 pfam02861 Clp_N Clp amino term 97.4 0.00043 1.1E-08 52.2 6.0 51 94-144 1-52 (53)
347 pfam00931 NB-ARC NB-ARC domain 97.4 0.013 3.2E-07 40.3 13.4 150 183-354 1-169 (285)
348 KOG1970 consensus 97.4 0.0071 1.8E-07 42.3 11.8 168 155-340 67-266 (634)
349 pfam03266 DUF265 Protein of un 97.3 0.002 5.2E-08 46.7 8.4 132 201-345 1-162 (168)
350 PRK07132 DNA polymerase III su 97.3 0.003 7.6E-08 45.4 9.2 152 573-769 3-159 (303)
351 KOG0742 consensus 97.3 0.0052 1.3E-07 43.4 10.4 134 201-353 386-527 (630)
352 COG2804 PulE Type II secretory 97.3 0.00058 1.5E-08 51.1 5.4 100 595-700 255-355 (500)
353 PRK05057 aroK shikimate kinase 97.3 0.0041 1E-07 44.3 9.7 143 197-365 2-151 (172)
354 KOG2680 consensus 97.3 0.0022 5.5E-08 46.5 8.2 139 600-804 254-392 (454)
355 KOG0741 consensus 97.3 0.00085 2.2E-08 49.8 6.0 87 593-695 533-629 (744)
356 cd01129 PulE-GspE PulE/GspE Th 97.2 0.00073 1.9E-08 50.4 5.6 99 595-699 77-176 (264)
357 PRK12724 flagellar biosynthesi 97.2 0.001 2.6E-08 49.1 6.4 88 597-686 222-315 (432)
358 KOG0478 consensus 97.2 0.0044 1.1E-07 44.0 9.6 228 557-807 418-678 (804)
359 cd01131 PilT Pilus retraction 97.2 0.0011 2.9E-08 48.8 6.4 94 599-699 2-101 (198)
360 KOG2680 consensus 97.2 0.003 7.7E-08 45.3 8.5 75 329-417 346-424 (454)
361 TIGR02442 Cob-chelat-sub cobal 97.2 0.0069 1.8E-07 42.4 10.2 213 569-816 5-279 (688)
362 PRK05707 DNA polymerase III su 97.2 0.022 5.5E-07 38.4 12.7 110 595-720 19-145 (328)
363 PRK09087 hypothetical protein; 97.2 0.033 8.5E-07 36.8 13.4 170 184-397 29-202 (226)
364 KOG1051 consensus 97.2 0.0087 2.2E-07 41.6 10.4 68 4-71 88-155 (898)
365 KOG0651 consensus 97.1 0.0081 2.1E-07 41.9 10.1 158 176-351 130-313 (388)
366 COG4650 RtcR Sigma54-dependent 97.1 0.01 2.6E-07 41.1 10.5 27 672-698 284-310 (531)
367 PRK07993 DNA polymerase III su 97.1 0.035 9E-07 36.7 13.2 108 599-722 25-149 (334)
368 PRK06995 flhF flagellar biosyn 97.1 0.0014 3.6E-08 48.1 5.9 178 599-804 177-368 (404)
369 KOG0726 consensus 97.1 0.0014 3.6E-08 48.0 5.9 137 195-351 215-366 (440)
370 TIGR02880 cbbX_cfxQ CbbX prote 97.1 0.0088 2.2E-07 41.6 9.9 164 177-349 27-203 (284)
371 PRK13406 bchD magnesium chelat 97.0 0.0093 2.4E-07 41.4 9.6 164 201-406 27-216 (584)
372 PRK05917 DNA polymerase III su 97.0 0.043 1.1E-06 36.0 13.1 124 199-340 19-153 (290)
373 PRK06731 flhF flagellar biosyn 97.0 0.0022 5.6E-08 46.4 6.3 109 575-685 52-169 (270)
374 PRK07940 DNA polymerase III su 97.0 0.045 1.1E-06 35.8 27.5 174 176-379 3-208 (395)
375 PTZ00112 origin recognition co 97.0 0.0018 4.5E-08 47.2 5.7 179 178-374 267-472 (650)
376 COG0606 Predicted ATPase with 97.0 0.00096 2.4E-08 49.4 4.3 143 179-363 180-347 (490)
377 PRK13765 ATP-dependent proteas 97.0 0.0012 3E-08 48.7 4.7 125 273-402 228-381 (637)
378 PRK08116 hypothetical protein; 97.0 0.0029 7.5E-08 45.4 6.8 70 201-280 110-181 (262)
379 pfam00931 NB-ARC NB-ARC domain 97.0 0.015 3.9E-07 39.6 10.4 121 575-719 3-136 (285)
380 COG1936 Predicted nucleotide k 97.0 0.009 2.3E-07 41.5 9.1 143 601-774 3-151 (180)
381 PRK03731 aroL shikimate kinase 97.0 0.02 5E-07 38.7 10.8 147 199-367 2-153 (172)
382 pfam05729 NACHT NACHT domain. 97.0 0.0072 1.8E-07 42.3 8.6 141 600-774 2-162 (165)
383 PRK13894 conjugal transfer ATP 97.0 0.0015 3.8E-08 47.8 4.9 90 600-698 151-245 (320)
384 PRK13900 type IV secretion sys 96.9 0.0012 3.2E-08 48.5 4.4 90 600-698 162-260 (332)
385 COG1643 HrpA HrpA-like helicas 96.9 0.002 5.1E-08 46.8 5.4 148 179-338 50-231 (845)
386 PRK10436 hypothetical protein; 96.9 0.00078 2E-08 50.1 3.3 100 595-700 212-312 (461)
387 cd01130 VirB11-like_ATPase Typ 96.9 0.0012 3.2E-08 48.5 4.2 94 599-698 26-125 (186)
388 KOG0732 consensus 96.9 0.0057 1.4E-07 43.1 7.5 88 183-284 579-666 (1080)
389 PTZ00111 DNA replication licen 96.9 0.038 9.7E-07 36.4 11.7 182 561-766 444-649 (916)
390 PRK06696 uridine kinase; Valid 96.9 0.0026 6.7E-08 45.8 5.7 68 575-648 9-76 (227)
391 COG1239 ChlI Mg-chelatase subu 96.9 0.048 1.2E-06 35.6 12.0 181 201-406 40-288 (423)
392 pfam03969 AFG1_ATPase AFG1-lik 96.8 0.0087 2.2E-07 41.6 8.1 95 201-312 63-162 (361)
393 PRK13946 shikimate kinase; Pro 96.8 0.034 8.7E-07 36.8 11.1 145 191-361 12-163 (195)
394 KOG1514 consensus 96.8 0.0097 2.5E-07 41.2 8.2 216 567-821 395-626 (767)
395 TIGR01818 ntrC nitrogen regula 96.8 0.045 1.2E-06 35.8 11.4 203 177-424 134-366 (471)
396 cd03238 ABC_UvrA The excision 96.8 0.0053 1.4E-07 43.3 6.6 20 600-619 23-42 (176)
397 PRK06921 hypothetical protein; 96.8 0.007 1.8E-07 42.4 7.0 72 197-281 114-186 (265)
398 cd01121 Sms Sms (bacterial rad 96.7 0.0028 7.1E-08 45.6 4.9 182 184-385 68-280 (372)
399 COG2766 PrkA Putative Ser prot 96.7 0.0089 2.3E-07 41.5 7.5 67 310-377 300-369 (649)
400 cd03246 ABCC_Protease_Secretio 96.7 0.0034 8.6E-08 44.9 5.2 25 600-624 30-54 (173)
401 PRK10867 signal recognition pa 96.7 0.068 1.7E-06 34.3 11.8 27 199-225 100-126 (453)
402 PRK12727 flagellar biosynthesi 96.7 0.0011 2.9E-08 48.8 2.7 97 597-695 347-452 (557)
403 PRK03846 adenylylsulfate kinas 96.7 0.0024 6.1E-08 46.2 4.3 52 595-653 22-73 (198)
404 KOG1969 consensus 96.7 0.045 1.1E-06 35.8 10.8 168 590-802 317-500 (877)
405 COG2607 Predicted ATPase (AAA+ 96.7 0.042 1.1E-06 36.0 10.6 99 183-306 69-167 (287)
406 KOG2227 consensus 96.7 0.011 2.7E-07 40.9 7.5 165 175-353 147-337 (529)
407 PRK11823 DNA repair protein Ra 96.7 0.0033 8.5E-08 45.0 4.8 187 184-385 76-287 (454)
408 cd03115 SRP The signal recogni 96.7 0.0014 3.6E-08 48.0 2.9 84 600-685 2-97 (173)
409 PRK13695 putative NTPase; Prov 96.7 0.0073 1.9E-07 42.2 6.6 25 201-225 5-29 (174)
410 PRK12723 flagellar biosynthesi 96.7 0.0033 8.5E-08 45.0 4.8 100 593-695 170-281 (388)
411 PRK11889 flhF flagellar biosyn 96.6 0.0047 1.2E-07 43.8 5.4 142 596-765 239-391 (436)
412 KOG2227 consensus 96.6 0.083 2.1E-06 33.6 16.8 23 529-551 401-423 (529)
413 pfam01057 Parvo_NS1 Parvovirus 96.6 0.014 3.6E-07 39.9 7.8 142 596-770 111-256 (271)
414 COG1373 Predicted ATPase (AAA+ 96.6 0.087 2.2E-06 33.5 11.9 165 182-388 21-187 (398)
415 PRK06835 DNA replication prote 96.6 0.017 4.5E-07 39.1 8.1 118 188-322 173-296 (330)
416 KOG0727 consensus 96.6 0.0062 1.6E-07 42.8 5.6 140 200-357 190-342 (408)
417 pfam03215 Rad17 Rad17 cell cyc 96.5 0.078 2E-06 33.9 11.2 55 740-800 187-242 (490)
418 TIGR03499 FlhF flagellar biosy 96.5 0.047 1.2E-06 35.6 10.0 40 201-245 196-237 (282)
419 PRK07004 replicative DNA helic 96.5 0.078 2E-06 33.9 11.1 81 159-245 172-255 (460)
420 TIGR01420 pilT_fam twitching m 96.5 0.0023 5.8E-08 46.4 3.2 160 595-800 124-300 (350)
421 cd01120 RecA-like_NTPases RecA 96.5 0.046 1.2E-06 35.7 9.9 24 202-225 2-25 (165)
422 TIGR00455 apsK adenylylsulfate 96.5 0.0026 6.8E-08 45.8 3.5 113 596-767 16-135 (187)
423 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0074 1.9E-07 42.2 5.7 94 600-720 28-127 (144)
424 COG1419 FlhF Flagellar GTP-bin 96.5 0.0028 7.1E-08 45.6 3.5 85 596-688 201-299 (407)
425 PRK13947 shikimate kinase; Pro 96.5 0.03 7.8E-07 37.2 8.8 138 200-360 2-143 (171)
426 PRK13406 bchD magnesium chelat 96.5 0.1 2.6E-06 32.9 11.6 50 356-407 187-236 (584)
427 cd00464 SK Shikimate kinase (S 96.4 0.037 9.5E-07 36.5 9.0 141 201-365 1-145 (154)
428 pfam01583 APS_kinase Adenylyls 96.4 0.0038 9.6E-08 44.6 3.9 40 599-638 3-42 (157)
429 PRK05541 adenylylsulfate kinas 96.4 0.0043 1.1E-07 44.1 4.1 44 595-639 5-48 (176)
430 PRK13900 type IV secretion sys 96.4 0.11 2.7E-06 32.8 11.0 113 185-356 147-259 (332)
431 PRK08506 replicative DNA helic 96.4 0.12 3E-06 32.4 16.3 81 159-245 153-234 (473)
432 smart00487 DEXDc DEAD-like hel 96.3 0.0095 2.4E-07 41.3 5.4 26 599-624 25-50 (201)
433 KOG3347 consensus 96.3 0.0062 1.6E-07 42.8 4.2 137 600-772 9-162 (176)
434 COG1066 Sms Predicted ATP-depe 96.3 0.0085 2.2E-07 41.7 4.9 180 190-387 82-292 (456)
435 TIGR02640 gas_vesic_GvpN gas v 96.3 0.014 3.6E-07 39.9 6.0 137 201-353 23-197 (265)
436 PRK00771 signal recognition pa 96.3 0.059 1.5E-06 34.9 9.2 27 199-225 97-123 (433)
437 PRK08699 DNA polymerase III su 96.2 0.13 3.4E-06 31.9 11.2 107 596-720 20-152 (325)
438 PRK13833 conjugal transfer pro 96.2 0.02 5.2E-07 38.6 6.7 90 600-698 146-240 (323)
439 pfam00448 SRP54 SRP54-type pro 96.2 0.0048 1.2E-07 43.7 3.6 113 600-723 3-128 (196)
440 PRK11664 ATP-dependent RNA hel 96.2 0.016 4.1E-07 39.5 6.2 128 187-329 10-174 (812)
441 PRK04841 transcriptional regul 96.2 0.058 1.5E-06 34.9 9.1 39 179-220 15-53 (903)
442 PRK08533 flagellar accessory p 96.2 0.085 2.2E-06 33.6 9.9 29 198-226 23-51 (230)
443 PRK07952 DNA replication prote 96.2 0.019 4.8E-07 38.9 6.4 70 200-280 97-168 (242)
444 KOG1514 consensus 96.2 0.14 3.6E-06 31.7 13.0 180 159-352 380-587 (767)
445 PRK10490 sensor protein KdpD; 96.2 0.15 3.7E-06 31.7 11.2 89 750-852 725-815 (895)
446 pfam00025 Arf ADP-ribosylation 96.2 0.017 4.3E-07 39.3 6.0 32 190-221 5-36 (174)
447 COG3267 ExeA Type II secretory 96.1 0.1 2.6E-06 33.0 9.9 194 599-827 52-253 (269)
448 pfam02562 PhoH PhoH-like prote 96.1 0.013 3.2E-07 40.3 5.3 114 571-717 7-126 (205)
449 PRK12608 transcription termina 96.1 0.097 2.5E-06 33.1 9.8 122 188-315 120-281 (379)
450 COG1485 Predicted ATPase [Gene 96.1 0.071 1.8E-06 34.2 9.1 89 200-308 66-163 (367)
451 PTZ00112 origin recognition co 96.1 0.024 6.2E-07 38.0 6.7 204 567-811 266-484 (650)
452 PRK08939 primosomal protein Dn 96.1 0.05 1.3E-06 35.4 8.3 123 182-323 136-270 (306)
453 cd03247 ABCC_cytochrome_bd The 96.1 0.031 7.8E-07 37.2 7.2 46 600-648 30-78 (178)
454 cd02027 APSK Adenosine 5'-phos 96.1 0.0057 1.5E-07 43.1 3.3 40 600-639 1-40 (149)
455 COG3604 FhlA Transcriptional r 96.1 0.012 3E-07 40.5 4.9 116 176-312 221-350 (550)
456 TIGR02533 type_II_gspE general 96.0 0.0051 1.3E-07 43.5 2.8 88 595-690 242-337 (495)
457 PRK05480 uridine kinase; Provi 96.0 0.0086 2.2E-07 41.7 3.9 41 594-637 3-43 (209)
458 PRK05703 flhF flagellar biosyn 96.0 0.17 4.4E-06 31.0 11.7 71 201-279 212-296 (412)
459 COG1241 MCM2 Predicted ATPase 96.0 0.17 4.4E-06 31.0 13.5 44 179-223 287-343 (682)
460 PRK13851 type IV secretion sys 96.0 0.18 4.5E-06 31.0 12.1 90 600-698 164-261 (343)
461 PRK00889 adenylylsulfate kinas 96.0 0.0086 2.2E-07 41.6 3.8 43 596-639 3-45 (175)
462 pfam05272 VirE Virulence-assoc 96.0 0.039 1E-06 36.3 7.1 25 600-624 54-78 (198)
463 cd03228 ABCC_MRP_Like The MRP 95.9 0.031 7.8E-07 37.1 6.4 33 600-633 30-62 (171)
464 PRK13851 type IV secretion sys 95.9 0.013 3.4E-07 40.1 4.4 111 184-355 148-259 (343)
465 COG1061 SSL2 DNA or RNA helica 95.8 0.045 1.1E-06 35.8 7.0 42 183-226 41-82 (442)
466 cd04176 Rap2 Rap2 subgroup. T 95.8 0.031 7.9E-07 37.1 6.2 22 202-223 4-25 (163)
467 PRK00091 miaA tRNA delta(2)-is 95.8 0.0089 2.3E-07 41.5 3.4 40 198-247 3-42 (304)
468 PRK10536 hypothetical protein; 95.8 0.024 6E-07 38.1 5.5 138 542-717 38-183 (262)
469 TIGR01842 type_I_sec_PrtD type 95.8 0.0066 1.7E-07 42.6 2.6 39 599-638 356-395 (556)
470 pfam04851 ResIII Type III rest 95.8 0.019 4.8E-07 38.9 4.9 26 199-224 18-43 (103)
471 PRK03918 chromosome segregatio 95.8 0.012 3.1E-07 40.4 3.9 16 757-772 824-839 (882)
472 PRK08760 replicative DNA helic 95.8 0.21 5.3E-06 30.4 11.1 80 159-245 190-271 (476)
473 pfam10923 DUF2791 Protein of u 95.8 0.21 5.3E-06 30.4 10.3 142 673-830 92-250 (267)
474 COG2909 MalT ATP-dependent tra 95.7 0.068 1.7E-06 34.3 7.6 29 255-283 113-141 (894)
475 PRK04220 2-phosphoglycerate ki 95.7 0.031 7.8E-07 37.2 5.7 41 591-634 86-126 (306)
476 COG1618 Predicted nucleotide k 95.7 0.0079 2E-07 42.0 2.7 25 600-624 7-31 (179)
477 PRK10246 exonuclease subunit S 95.7 0.012 3E-07 40.5 3.6 28 751-779 975-1005(1047)
478 cd01882 BMS1 Bms1. Bms1 is an 95.7 0.11 2.9E-06 32.6 8.5 97 202-316 42-142 (225)
479 TIGR02329 propionate_PrpR prop 95.6 0.041 1E-06 36.2 6.1 225 568-819 319-566 (658)
480 TIGR03498 FliI_clade3 flagella 95.6 0.15 3.9E-06 31.5 9.0 148 201-396 142-336 (418)
481 cd01124 KaiC KaiC is a circadi 95.6 0.13 3.4E-06 32.0 8.7 24 202-225 2-25 (187)
482 pfam02702 KdpD Osmosensitive K 95.6 0.053 1.3E-06 35.3 6.6 142 602-766 8-168 (211)
483 PRK09376 rho transcription ter 95.6 0.1 2.5E-06 33.0 7.9 111 187-303 156-297 (416)
484 cd00878 Arf_Arl Arf (ADP-ribos 95.6 0.029 7.3E-07 37.4 5.1 20 202-221 2-21 (158)
485 cd03229 ABC_Class3 This class 95.6 0.038 9.6E-07 36.4 5.7 36 600-636 28-63 (178)
486 PRK06321 replicative DNA helic 95.5 0.2 5.2E-06 30.5 9.4 62 179-245 205-268 (472)
487 cd04154 Arl2 Arl2 subfamily. 95.5 0.031 7.8E-07 37.2 5.2 26 195-220 10-35 (173)
488 PRK08694 consensus 95.5 0.25 6.5E-06 29.7 11.3 62 179-245 197-260 (468)
489 COG0703 AroK Shikimate kinase 95.5 0.26 6.5E-06 29.7 10.4 70 199-274 2-75 (172)
490 TIGR02538 type_IV_pilB type IV 95.5 0.012 3.1E-07 40.4 3.1 39 152-195 100-138 (577)
491 KOG2543 consensus 95.5 0.19 4.9E-06 30.7 9.2 162 177-355 4-194 (438)
492 PRK13948 shikimate kinase; Pro 95.5 0.17 4.3E-06 31.1 8.9 31 196-226 7-37 (182)
493 cd04107 Rab32_Rab38 Rab38/Rab3 95.5 0.018 4.6E-07 39.1 3.9 21 202-222 3-23 (201)
494 cd04102 RabL3 RabL3 (Rab-like3 95.5 0.047 1.2E-06 35.6 6.1 20 202-221 3-22 (202)
495 pfam06414 Zeta_toxin Zeta toxi 95.5 0.016 4.1E-07 39.4 3.7 47 592-641 7-53 (191)
496 PRK07667 uridine kinase; Provi 95.5 0.031 7.9E-07 37.1 5.1 44 597-640 11-56 (190)
497 PRK00409 recombination and DNA 95.5 0.26 6.6E-06 29.6 23.8 203 192-429 318-530 (780)
498 PRK09270 frcK putative fructos 95.5 0.037 9.5E-07 36.5 5.5 59 574-637 15-75 (230)
499 PRK12726 flagellar biosynthesi 95.5 0.027 6.8E-07 37.6 4.7 29 599-627 207-235 (407)
500 KOG0478 consensus 95.5 0.27 6.8E-06 29.5 13.0 171 200-394 463-670 (804)
No 1
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=0 Score=2037.16 Aligned_cols=850 Identities=55% Similarity=0.901 Sum_probs=829.7
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99237179999999999999998289963389999998618876689999973999899999999999745954789777
Q gi|254780877|r 1 MNSDKYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQ 80 (853)
Q Consensus 1 Md~~kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~ 80 (853)
|+++|||+.++++|..|+.+|++++|.||+++|||++|+.++++.+..+|+++|+|+..++++++.++++.|...+....
T Consensus 1 m~~~k~t~~~~~al~~A~~~A~~~~h~~v~~eHll~all~~~~~~~~~~l~~~~~d~~~l~~~l~~~l~~~~~~~~~~~~ 80 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80 (857)
T ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98155399999999999999998598843599999999769974799999986999999999999998627887898888
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 70698999999999999997198702599987668727751788999759998999999998737788787775467610
Q gi|254780877|r 81 VYLSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIGESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDA 160 (853)
Q Consensus 81 ~~~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~ 160 (853)
+++|+.+.++|+.|+..++.+++.+|+++|+|+|++.+.+..+++|.+.|++.+.+...+.....+....+..++...++
T Consensus 81 ~~~s~~~~~~l~~a~~~a~~~~~~~i~~~~llla~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (857)
T PRK10865 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160 (857)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 08787999999999999998599824299999999718877999999879999999999998717888877886642368
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE
Q ss_conf 78864435699872985333335789999999633677786689528874077799999998734899844457437887
Q gi|254780877|r 161 LKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL 240 (853)
Q Consensus 161 L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l 240 (853)
|++||+|||++|++|+||||||||+||+++++|||||+||||||||||||||||||||||++|++|+||+.|+|++||+|
T Consensus 161 L~~y~~dLt~~A~~gkldpvIGRd~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~L 240 (857)
T PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEE
T ss_conf 99997888999982999988582999999999970257899758789998899999999999983899978816902473
Q ss_pred EHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHH
Q ss_conf 31354217454202454589999998607997699963627730266655433588887653124660489974489999
Q gi|254780877|r 241 DMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYR 320 (853)
Q Consensus 241 d~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyr 320 (853)
|+++|+|||+||||||+|||.|++|+..++|++||||||+|||||||+++|+|||||||||+||||+|||||||||+|||
T Consensus 241 Dlg~L~AGakyRGeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGelr~IGATT~~EYr 320 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred EHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 38878614765211799999999999847898699973435433688777753478886788737985499945899999
Q ss_pred HHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 97300111320231111157776789999999789865414961015899999863332024576747789999999998
Q gi|254780877|r 321 KYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASAR 400 (853)
Q Consensus 321 k~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~ 400 (853)
||||||+||+||||+|.|+|||.++|+.||+|++++||+||+|+|+|+||.+||+||+|||+||+||||||||||||||+
T Consensus 321 k~iEkD~AL~RRFq~V~V~EPs~e~ti~ILrgl~~~yE~hH~V~itdeAl~aAV~LS~RYI~dR~LPDKAIDLLDeA~A~ 400 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 87134588998537100689987999999998888998737915879999999998624566667814898899999888
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75410222145788799999744569998502223566568999876899999999999988865667655999999988
Q gi|254780877|r 401 VRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLE 480 (853)
Q Consensus 401 ~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~ 480 (853)
++++++++|..++++++++.+++++..++.++.+.....++..+.+++..++.++..+.+.|..++.....+..++..++
T Consensus 401 vr~~~~~~p~~l~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (857)
T PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480 (857)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87632468446899999999999999998841007789999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHH
Q ss_conf 74888888642111567654320110689999999997511267720001686678999876617866775100000001
Q gi|254780877|r 481 SMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFL 560 (853)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl 560 (853)
.....++.+.+.++.....++.+..+|..++++............+.+..|+.++|++|||+|||||++++.++|.++|+
T Consensus 481 ~~~~~~e~~~~~~~~~~~~el~~~~ip~~e~~l~~~~~~~~~~~~~~~~~V~~~~ia~vvs~~TgIPv~~l~~~e~~~L~ 560 (857)
T PRK10865 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLL 560 (857)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHCCCCHHCCCCHHHHHH
T ss_conf 98888999886413766777652201889999999987530011022235689999999999968983021310589999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 23554776745948999999999987410123656651289872678616889999999872377653002244774034
Q gi|254780877|r 561 RIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK 640 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~ 640 (853)
+|++.|+++||||++||++|+++|+++|+||++|+||+|||||+||||||||||||+||++|||++++|||||||||||+
T Consensus 561 ~le~~L~~rViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~ 640 (857)
T PRK10865 561 RMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640 (857)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCC
T ss_conf 99999987852809999999999999863899999973899986898788899999999998389334256253321130
Q ss_pred CCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCH
Q ss_conf 53201304771120356677421132215641022021441498999999998404578879997783033155954851
Q gi|254780877|r 641 HSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNL 720 (853)
Q Consensus 641 ~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~ 720 (853)
||||||||||||||||++||+|||+||++|||||||||||||||+|+|+||||||+|+|||+.||+|||+|||||||||+
T Consensus 641 hsVSrLiGaPPGYVGy~eGG~LTeaVRr~PySVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtIIImTSN~ 720 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCCH
T ss_conf 12767558998766757788110999819877886325766385899999987036832079998885133489964623
Q ss_pred HHHHHHCC-----HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 26876403-----2679999999998628857726668158628899899999999999999999985798999988999
Q gi|254780877|r 721 GAEYLIED-----GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853)
Q Consensus 721 G~~~~~~~-----~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853)
||+.+.+. ....++.++++++++|+|||+||+|+||+|+||+++++.+|+++++.++.+||++++|.+.++++++
T Consensus 721 Gs~~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFlnRiD~iv~F~pL~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~ 800 (857)
T PRK10865 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800 (857)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 36999865065566889999999998647988882378489827899999999999999999999997798499888999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
Q ss_conf 9999708982206215799999873349999997086889788999998994898
Q gi|254780877|r 796 DWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDDNLNF 850 (853)
Q Consensus 796 ~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~~~~~~ 850 (853)
+||+++||||.||||||+|+|+++|++|||+.+|+|.+++|++|.|++++++++.
T Consensus 801 ~~l~~~gyd~~~GARpl~r~I~~~i~~~ls~~il~g~~~~g~~i~v~~~~~~~v~ 855 (857)
T PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVA 855 (857)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 9999848897747137899999998899999997288899698999977998898
No 2
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=0 Score=2029.32 Aligned_cols=845 Identities=61% Similarity=0.988 Sum_probs=824.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 17999999999999999828996338999999861887668999997399989999999999974595478977770698
Q gi|254780877|r 6 YSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQVYLSQ 85 (853)
Q Consensus 6 FS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~~~~S~ 85 (853)
||++++++|+.|+.+|++++|.||++||||++|++++++.+..+|+.+|+|.+.++++++.++++.|...+..+.|.+|+
T Consensus 1 ft~~a~~aL~~A~~~A~~~~h~~V~~eHlLlaLl~~~~~~~~~~L~~~gvd~~~l~~~l~~~l~~~~~~~~~~~~~~~s~ 80 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKVSGPGGQVYLSP 80 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 98899999999999999859990279999999973998479999998598999999999999973798889988828698
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999999999719870259998766872775178899975999899999999873778878777546761078864
Q gi|254780877|r 86 PLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIGESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKKYC 165 (853)
Q Consensus 86 ~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~L~ky~ 165 (853)
.++++|++||.+|..+|+.+|+++|||+||+.+.++.+.+|.++|++.+.+.+.+..+.+++...+..++...++|++||
T Consensus 81 ~~~~vL~~A~~~a~~~~~~~I~~~hlLlall~~~~~~~~~l~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~L~~y~ 160 (852)
T TIGR03346 81 ELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGGQKVTSANAEDQYEALEKYA 160 (852)
T ss_pred HHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999999849997739999999970985599999986999999999999871788888888754357899998
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH
Q ss_conf 43569987298533333578999999963367778668952887407779999999873489984445743788731354
Q gi|254780877|r 166 RDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL 245 (853)
Q Consensus 166 ~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l 245 (853)
+|||++|++|++|||||||+||+++++|||||+||||||||||||||||||||||++|++|+||+.|+|++||+||+|+|
T Consensus 161 ~dLT~~A~~gklDpviGRd~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~L 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHH
T ss_conf 88999998289997738369999999999873248972127999879999999999986699997885185127528877
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHC
Q ss_conf 21745420245458999999860799769996362773026665543358888765312466048997448999997300
Q gi|254780877|r 246 IAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEK 325 (853)
Q Consensus 246 ~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEk 325 (853)
+|||+||||||+|||.|++|+++++++|||||||+|||||||+++|+|||||||||+||||+|||||||||+||||||||
T Consensus 241 vAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgATT~~EYrk~iEk 320 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEK 320 (852)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC
T ss_conf 52153007899999999999985899879996125553268876664106777437874798559982789999988322
Q ss_pred CHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 11132023111115777678999999978986541496101589999986333202457674778999999999875410
Q gi|254780877|r 326 DPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQI 405 (853)
Q Consensus 326 D~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~ 405 (853)
|+||+||||+|.|+|||.++|+.||+|++++||.||+|+|+|+||++||+||+|||++|+||||||||||||||++++++
T Consensus 321 D~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R~LPDKAIDlLDeA~a~~~~~~ 400 (852)
T TIGR03346 321 DAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEI 400 (852)
T ss_pred CHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 68899737712047998689999999769999762792673999999999713466778896189999999999887623
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22214578879999974456999850222356656899987689999999999998886566765599999998874888
Q gi|254780877|r 406 DTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNE 485 (853)
Q Consensus 406 ~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 485 (853)
+++|..|+++++++.+++++..++.++.|....+++..+++++..++.++..+.+.|+.++.....+..++..++.+...
T Consensus 401 ~~~p~~l~~~~~~~~~l~~e~~~l~~e~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (852)
T TIGR03346 401 DSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLE 480 (852)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78946799999999999999999984430667999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHH
Q ss_conf 888642111567654320110689999999997511--267720001686678999876617866775100000001235
Q gi|254780877|r 486 LAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADS--TAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIE 563 (853)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l~ 563 (853)
++.+.+.++.+.+.++.+..++..++.+...+.... ....+++.+|+.++|++|||+|||||+++++++|.++|++|+
T Consensus 481 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ia~vvs~~tgIPv~~~~~~e~~~L~~Le 560 (852)
T TIGR03346 481 LEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHME 560 (852)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99998750477777754322799999999999876411234423366799999999999968866766654799998788
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 54776745948999999999987410123656651289872678616889999999872377653002244774034532
Q gi|254780877|r 564 TEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV 643 (853)
Q Consensus 564 ~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~v 643 (853)
+.|+++||||++||++|+++|+++|+||++|+||+|||||+||||||||||||+||++|||++++|||||||||+|+|||
T Consensus 561 ~~L~~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~hsv 640 (852)
T TIGR03346 561 EVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHH
T ss_conf 88998971709999999999999971888899974589986788776899999999998558520698430443012247
Q ss_pred CHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 01304771120356677421132215641022021441498999999998404578879997783033155954851268
Q gi|254780877|r 644 SRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 644 s~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
|||||||||||||++||+|||+||++|||||||||||||||+|+|+||||||+|+|||+.||+|||+|||||||||+|++
T Consensus 641 srLiGaPPGYVGy~egG~Lte~vr~~PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~NtiiimTSN~Ga~ 720 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQ 720 (852)
T ss_pred HHHCCCCCCCCCCCCCCEECHHHHHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEECCCCHH
T ss_conf 78558999767768787423989819887998530543076899999988236743079998885355689861540659
Q ss_pred HHHCC-----HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHH
Q ss_conf 76403-----2679999999998628857726668158628899899999999999999999985798999988999999
Q gi|254780877|r 724 YLIED-----GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWL 798 (853)
Q Consensus 724 ~~~~~-----~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l 798 (853)
.+... .+..+..++++++++|+|||+||||++|+|+||+.+++.+|+.+++.++.++++++++.+.+++++++||
T Consensus 721 ~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l 800 (852)
T TIGR03346 721 FIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFL 800 (852)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_conf 99741145557999999999999658998996378689837899999999999999999999997798499888999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
Q ss_conf 9708982206215799999873349999997086889788999998994898
Q gi|254780877|r 799 SCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDDNLNF 850 (853)
Q Consensus 799 ~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~~~~~~ 850 (853)
+++|||+.||||||+|.|++.|.+|||+++|+|.+++|++|+|++++++++|
T Consensus 801 ~~~g~~~~~GAR~l~r~i~~~i~~~la~~iL~g~~~~g~~v~v~~~~~~~~f 852 (852)
T TIGR03346 801 AEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVVDVEGGRLVF 852 (852)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEC
T ss_conf 9848897747156999999998899999997488899598999977999759
No 3
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=100.00 E-value=0 Score=2020.17 Aligned_cols=728 Identities=45% Similarity=0.748 Sum_probs=676.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCC-C-------
Q ss_conf 1799999999999999982899633899999986188766899999739-998999999999997459547-8-------
Q gi|254780877|r 6 YSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSG-GDIAQLKDYNQTVLSKIPKVT-G------- 76 (853)
Q Consensus 6 FS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~g-vd~~~L~~~le~~L~k~~k~~-~------- 76 (853)
+|++++++|..|.++|+.++|+|||+|||||||+.++. +..+|+.|| +|++.|++.++.|+++.-++. .
T Consensus 1 ~~~~l~~~L~~A~~~AK~~~HEf~T~EH~Llal~~~~~--~~~il~~cgd~d~~~L~~~L~~yl~~~~~~~~~~qlGyGg 78 (774)
T TIGR02639 1 ISKELERILSEALEEAKERRHEFVTLEHLLLALLDDNE--AIEILEECGDGDVELLRKKLEDYLEENLEVLEEEQLGYGG 78 (774)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 98789999999999998618942438999999703767--8999985333118999999999875138877602244688
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHHCCCC------
Q ss_conf -97777069899999999999999719870259998766872775178-8999759998999999998737788------
Q gi|254780877|r 77 -GGAQVYLSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGRV------ 148 (853)
Q Consensus 77 -~~~~~~~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~~~~~------ 148 (853)
...+|..|-.+++||++|..+.+..+++.|+..|||.|||.|..|++ ++|.+.|+++-++.+.+.+-.....
T Consensus 79 ~~~~ep~~T~g~~~Viq~A~~h~~s~~~~~~~~gD~Lvalf~E~~S~a~Y~Lk~qgi~Rl~~~~~ish~i~~~~~~~~~~ 158 (774)
T TIGR02639 79 SEEEEPEQTVGVQRVIQRALLHVKSAGKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLDILNYISHGISKDDKKDQLG 158 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 86556300144789999999985314886023111001110278613102033217869999997414554578756331
Q ss_pred --------------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf --------------------787775467610788644356998729853333357899999996336777866895288
Q gi|254780877|r 149 --------------------ADSVNAEQGFDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDP 208 (853)
Q Consensus 149 --------------------~~~~~~e~~~~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~ 208 (853)
.+....+...++|++||+|||++|++|||||+||||+||+|+|||||||+|||||+||||
T Consensus 159 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE~EleRtiQvLCRR~KNNPl~VGEP 238 (774)
T TIGR02639 159 EEAAEEEEELQEEKEDSAREEDTDKAKKQQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEP 238 (774)
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCC
T ss_conf 22234201431467778766566520046569988415489998608878734566887423332034567887204488
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCHHHHCCC
Q ss_conf 740777999999987348-99844457437887313542174542024545899999986079976-9996362773026
Q gi|254780877|r 209 GVGKTAIIEGLASRIING-DIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEI-ILFIDELHVLVGA 286 (853)
Q Consensus 209 GvGKtaive~la~~i~~~-~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~-ilfide~h~~~ga 286 (853)
||||||||||||++|++| +||+.|+|.+||+||||+|+||||||||||+|||.|++|+.+.+ |. |||||||||||||
T Consensus 239 GVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~-~anILFIDEIHTIVGA 317 (774)
T TIGR02639 239 GVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEP-NANILFIDEIHTIVGA 317 (774)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCEEEC
T ss_conf 864489999999986415646700247834540434564102454247899999999985289-9954664110103317
Q ss_pred CCCC-CCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 6655-433588887653124660489974489999973001113202311111577767899999997898654149610
Q gi|254780877|r 287 GKTD-GAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRI 365 (853)
Q Consensus 287 G~~~-g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i 365 (853)
|+++ |||||||||||+|+.|.|||||+||++|||+|||||.||.||||+|.|+|||.+||+.||+|||++||+||+|+|
T Consensus 318 GATSGGsmDASNLLKPaL~~G~iRCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y 397 (774)
T TIGR02639 318 GATSGGSMDASNLLKPALASGKIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKY 397 (774)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEC
T ss_conf 87875155244321125307877862265248641110102021654233117957888999999865542013250113
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 15899999863332024576747789999999998754102221457887999997445699985022235665689998
Q gi|254780877|r 366 SDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELE 445 (853)
Q Consensus 366 ~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~ 445 (853)
+|+||.+||.||.|||.|||||||||||||||||.++|....+|...+--+
T Consensus 398 ~~eal~~Av~LS~ryI~DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eade----------------------------- 448 (774)
T TIGR02639 398 SDEALEAAVELSARYINDRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADE----------------------------- 448 (774)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH-----------------------------
T ss_conf 869999999998886025789854322889999999971202776432011-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 76899999999999988865667655999999988748888886421115676543201106899999999975112677
Q gi|254780877|r 446 KELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAED 525 (853)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (853)
.+...
T Consensus 449 ---------------------------------------------------------------------------kGlee 453 (774)
T TIGR02639 449 ---------------------------------------------------------------------------KGLEE 453 (774)
T ss_pred ---------------------------------------------------------------------------CCCCC
T ss_conf ---------------------------------------------------------------------------25300
Q ss_pred CCHHCCCHHHHHHHHHHHHCCCHHHHHHCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 200016866789998766178667751000-0000123554776745948999999999987410123656651289872
Q gi|254780877|r 526 MVQEVVTSDNIANIVSRWTGIPVDKMLESD-REKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFL 604 (853)
Q Consensus 526 ~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E-~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~ 604 (853)
...+.|+..||+.|||+||+||...++.|| .++|.||++.|+++|+|||+||++|+.+|++|||||.+|+||+|||||+
T Consensus 454 talPev~~~diE~vvak~a~iP~~~~s~ddD~~~L~~L~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~ 533 (774)
T TIGR02639 454 TALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREKLKNLEKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFV 533 (774)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 04787854449999988718994154264479887204476301315158999999999999874247788816888864
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCH
Q ss_conf 67861688999999987237765300224477403453201304771120356677421132215641022021441498
Q gi|254780877|r 605 GPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHS 684 (853)
Q Consensus 605 GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~ 684 (853)
|||||||||+||+||+.| .=+|+|||||||||+|+||||||||||||||||||+||+|||++|||||||||||||||
T Consensus 534 GPTGVGKTElak~LA~~L---Gv~l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHp 610 (774)
T TIGR02639 534 GPTGVGKTELAKQLAEEL---GVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHP 610 (774)
T ss_pred CCCCCCHHHHHHHHHHHH---CCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHH
T ss_conf 798962578899999970---82001046504468999987416888851316777212233128853542346666313
Q ss_pred HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCH-----HHHHHHHHHHHHHHCCHHHHCCCCCEEECC
Q ss_conf 999999998404578879997783033155954851268764032-----679999999998628857726668158628
Q gi|254780877|r 685 DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDG-----DSVHDKVMGIVRSAFKPEFLNRLDEIILFE 759 (853)
Q Consensus 685 ~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~-----~~~~~~~~~~l~~~f~peflnRid~iv~F~ 759 (853)
|++|+||||||.++||||.||++||||.|+|||||+|+.+..+.. +...+...++++++|.|||.||+|.||.|+
T Consensus 611 DI~NILLQVMD~AtLTDN~GrKaDFRNVILIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~ 690 (774)
T TIGR02639 611 DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFN 690 (774)
T ss_pred HHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECC
T ss_conf 36667876633543405888576311368884037001023677644255541233488897315874201334644169
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 89989999999999999999998579899998899999997089822062157999998733499999970868897889
Q gi|254780877|r 760 KLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSI 839 (853)
Q Consensus 760 ~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i 839 (853)
||+.+.+.+|+.++|.+|+.+|.+++|.|++++.|+.||+++|||++||||||.|+|+.+|.++|++.||+|.++.|..|
T Consensus 691 ~L~~~~~~~i~~K~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~~efGARpl~R~I~~~i~~~L~dEILFG~LKkGG~v 770 (774)
T TIGR02639 691 DLSEEVAEKIVKKFLDELQKQLNEKNVELELTDDAIKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGEV 770 (774)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 98899999999999999997553065378764789999986367811055448999887412576544205700167268
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780877|r 840 EVFV 843 (853)
Q Consensus 840 ~i~~ 843 (853)
.|++
T Consensus 771 ~~~~ 774 (774)
T TIGR02639 771 KISL 774 (774)
T ss_pred EEEC
T ss_conf 8738
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=0 Score=1953.78 Aligned_cols=821 Identities=40% Similarity=0.672 Sum_probs=753.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 17999999999999999828996338999999861887668999997399989999999999974595478977770698
Q gi|254780877|r 6 YSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQVYLSQ 85 (853)
Q Consensus 6 FS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~~~~S~ 85 (853)
+|+.++++|+.|+.+|++++|.||++||||++|+.++++.+..+|+++|+|+..++.+++.++++.|... ...+.+|+
T Consensus 1 Lt~~~~~aL~~A~~~A~~~~H~~I~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~--~~~~~~s~ 78 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGN--TRTPVFSP 78 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCH
T ss_conf 9889999999999999985998138999999998399747999999869999999999999996389899--99888787
Q ss_pred HHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHCCCCHHHH---HHH-CCCCHHHHHHHHHHHHCCC-----------CC
Q ss_conf 99999999999999-71987025999876687277517889---997-5999899999999873778-----------87
Q gi|254780877|r 86 PLAVILSKSEEIAK-KSGDSFVTAEKFLLAMVMETGGIGES---LKK-CGLKFSRLEESIKKLRKGR-----------VA 149 (853)
Q Consensus 86 ~l~rvL~~A~~~A~-~~g~~~I~~ehLLlAIl~e~~s~a~i---L~~-~gi~~~~l~e~i~~~~~~~-----------~~ 149 (853)
.+.++|++|+..+. .+|+.+|+++|||+|++++.+..+.. ... .+++.+.+...+....... ..
T Consensus 79 ~l~~vl~~A~~~a~~~~g~~~I~~~hlLlall~~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 158 (852)
T TIGR03345 79 HLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAEASAAAADAGPA 158 (852)
T ss_pred HHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999999999999985998773999999982596256789999888535899999999999835674333333345666
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 87775467610788644356998729853333357899999996336777866895288740777999999987348998
Q gi|254780877|r 150 DSVNAEQGFDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIP 229 (853)
Q Consensus 150 ~~~~~e~~~~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp 229 (853)
.+..++..+++|++||+|||++|++|++|||||||+||+|++||||||+|||||||||||||||||||||||+|++|+||
T Consensus 159 ~~~~~~~~~~~L~ky~~dLt~~A~~gklDPvIGRd~EI~r~iqIL~Rr~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP 238 (852)
T TIGR03345 159 AAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 238 (852)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 77777666448999978899999839999886949999999999986247997465799987999999999999769998
Q ss_pred HHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 44457437887313542174542024545899999986079976999636277302666554335888876531246604
Q gi|254780877|r 230 ESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELH 309 (853)
Q Consensus 230 ~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~ 309 (853)
+.|+|++||+||+++|+|||+||||||+|||.|++|+++++++|||||||||||||||+++|+|||||||||+||||+||
T Consensus 239 ~~L~~~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGelr 318 (852)
T TIGR03345 239 PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR 318 (852)
T ss_pred HHHHCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 67743856786788886403576359999999999998489976999634877528998888622788751787378734
Q ss_pred EEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 89974489999973001113202311111577767899999997898654149610158999998633320245767477
Q gi|254780877|r 310 CIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDK 389 (853)
Q Consensus 310 ~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDK 389 (853)
||||||++|||||||||+||+||||+|.|+|||.++|+.||+|++++||.||+|+|+|+||++||+||+|||+|||||||
T Consensus 319 ~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR~LPDK 398 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99835789998886426889962475527999879999999987999855479687089999999998721554558427
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999987541022214578879999974456999850222--356656899987689999999999998886566
Q gi|254780877|r 390 AIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKD--SFSKGRLIELEKELSSLEEKSHSLTLRWQEGQR 467 (853)
Q Consensus 390 AIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d--~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~ 467 (853)
||||||||||+++++++++|..++++++++.+++.+..++.++.. .....++..+.+++..+++++..+..+|+.++.
T Consensus 399 AIDLlDeA~A~~~~~~~~~p~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999998604895689999999999999999987445227332999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCC
Q ss_conf 76559999999887488888864211156765432011068999999999751126772000168667899987661786
Q gi|254780877|r 468 KILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIP 547 (853)
Q Consensus 468 ~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIP 547 (853)
...++..++..+............ .....++..+..+ ...+...+++..+|+.++|++|||+|||||
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~l----~~~~~~~~~~~~~V~~~~ia~vvs~~tgIP 545 (852)
T TIGR03345 479 LVEAILALRAELEADADAPADDDA---------ALRAQLAELEAAL----ASAQGEEPLVFPEVDAQAVAEVVADWTGIP 545 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH----HHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999999986651433457---------7888999999999----974045664435568999999999996898
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 67751000000012355477674594899999999998741012365665128987267861688999999987237765
Q gi|254780877|r 548 VDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDEN 627 (853)
Q Consensus 548 v~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~ 627 (853)
+++|+.+|.++|++|++.|+++||||++||++|+++|+++|+||++|+||+|||||+||||||||||||+||++|||+++
T Consensus 546 v~~l~~~e~~~l~~le~~L~~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~ 625 (852)
T TIGR03345 546 VGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQ 625 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 78861788888886799999997284999999999999987179999998568998789987789999999999719861
Q ss_pred CCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEE
Q ss_conf 30022447740345320130477112035667742113221564102202144149899999999840457887999778
Q gi|254780877|r 628 SMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTV 707 (853)
Q Consensus 628 ~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v 707 (853)
+|||||||||||+||||||||||||||||++||+|||+||++|||||||||||||||+|||+||||||+|+|||++||+|
T Consensus 626 ~liR~DMSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~v 705 (852)
T TIGR03345 626 NLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred CEEEECCHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHCCCEEECCCCCEE
T ss_conf 14784224321043687863899976674877721098880998688861130028899999998724677757999988
Q ss_pred ECCCCEEEECCCHHHHHHHCC---------HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 303315595485126876403---------26799999999986288577266681586288998999999999999999
Q gi|254780877|r 708 DFRNTLIIMTSNLGAEYLIED---------GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVL 778 (853)
Q Consensus 708 ~f~n~iii~TsN~G~~~~~~~---------~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~ 778 (853)
||+|||||||||+||+.+... .+.+.+.++.+++++|+|||+||| ++|+|+||+.+++.+|+.++|.++.
T Consensus 706 dF~NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi-~ii~F~~L~~~~l~~Iv~~~l~~l~ 784 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRM-TVIPYLPLDDDVLAAIVRLKLDRIA 784 (852)
T ss_pred ECEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCE-EEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 452129997572447999864037655566899999999999834798886456-6897368999999999999999999
Q ss_pred HHHHHC-CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-EEE
Q ss_conf 999857-98999988999999970898220621579999987334999999708688978899-999
Q gi|254780877|r 779 SLIKER-NISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIE-VFV 843 (853)
Q Consensus 779 ~~l~~~-~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~-i~~ 843 (853)
+||.++ +|.|.+++++++||+++||||.||||||+|+|++.|++|||+.||. .+.+|+.+. |.+
T Consensus 785 ~rL~~~~~i~l~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~i~~~la~~iL~-~~~~g~~~~~i~~ 850 (852)
T TIGR03345 785 RRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE-RLAAGEPIERIHL 850 (852)
T ss_pred HHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEEE
T ss_conf 99986289689988999999998289977686438999999988999999999-8708997248881
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=0 Score=1931.36 Aligned_cols=787 Identities=47% Similarity=0.761 Sum_probs=721.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 23717999999999999999828996338999999861887668999997399989999999999974595478977770
Q gi|254780877|r 3 SDKYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQVY 82 (853)
Q Consensus 3 ~~kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~~~ 82 (853)
++|||++++++|..|+++|++++|.+|++||||++|+.++++.+..+|+.+++|++.++.+++.++...+. ....+++
T Consensus 2 ~~kfT~~a~~~L~~A~~~A~~~~h~~V~~eHLLlaLl~~~~~~~~~~L~~~~vd~~~l~~~l~~~~~~~~~--~~~~~~~ 79 (823)
T CHL00095 2 FERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSLNVNLKDARKEVEKYIGRGSG--FVAVEIP 79 (823)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCCCCCC
T ss_conf 42366999999999999999859894089999999974998479999998699999999999999842699--8878868
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHHCCCCCC---CCCCCCCC
Q ss_conf 69899999999999999719870259998766872775178-899975999899999999873778878---77754676
Q gi|254780877|r 83 LSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGRVAD---SVNAEQGF 158 (853)
Q Consensus 83 ~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~~~~~~~---~~~~e~~~ 158 (853)
+|+.++++|+.|+..|..+|+.+|+++|||+||+++.++++ ++|..+|++...+++.+....+..... .......+
T Consensus 80 ~s~~~~~vL~~A~~~a~~~~~~~I~~ehLllall~e~~~~a~~iL~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (823)
T CHL00095 80 FTPRAKRVLELSLEEARILGHNYIGTEHLLLGLIREGEGVAARVLENLNVDLPKVRSLIINLIGEIAEVILGGGTSREKT 159 (823)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 88799999999999999829980439999999970897479999998799999999999998454565567886666565
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEE
Q ss_conf 10788644356998729853333357899999996336777866895288740777999999987348998444574378
Q gi|254780877|r 159 DALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLM 238 (853)
Q Consensus 159 ~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~ 238 (853)
++|++||+|||++|++|++|||||||+||+|+++|||||+||||||||||||||||||||||++|++|+||+.|+|++||
T Consensus 160 ~~L~ky~~dLT~~A~~GklDpvIGRd~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~ 239 (823)
T CHL00095 160 PTLEEFGNNLTKMAYEGNLDPVIGRDKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVL 239 (823)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEE
T ss_conf 56999978889999838999875956999999999977324885023799987999999999976088998687599368
Q ss_pred EEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 87313542174542024545899999986079976999636277302666554335888876531246604899744899
Q gi|254780877|r 239 ALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDE 318 (853)
Q Consensus 239 ~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~E 318 (853)
+||+++|+|||+||||||+|||+|++++++. +++||||||+|||||||+++|+|||||||||+||||+|||||||||+|
T Consensus 240 sLDl~~L~AGtkyRGeFEeRlk~il~ei~~~-~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGATT~~E 318 (823)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERIKKIMDEIKKA-NNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGATTLEE 318 (823)
T ss_pred EEEHHHHHHCCCCCHHHHHHHHHHHHHHHHC-CCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 8428877533422267999999999999857-986999735165328897666431788765786489866997078899
Q ss_pred HHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99973001113202311111577767899999997898654149610158999998633320245767477899999999
Q gi|254780877|r 319 YRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 319 yrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
||||||||+||+||||+|.|+|||.++|+.||+|++++||+||+|+|+|+||++||+||+|||+||+|||||||||||||
T Consensus 319 Yrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPDKAIDllDeA~ 398 (823)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPDKAIDLLDEAG 398 (823)
T ss_pred HHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99985305889962684102899879999999999999987508850478999999987764037778217888899998
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98754102221457887999997445699985022235665689998768999999999999888656676559999999
Q gi|254780877|r 399 ARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKR 478 (853)
Q Consensus 399 A~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 478 (853)
|++++.+.+.|..++++++.+..+..+........+......+...+.++. ..
T Consensus 399 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~ 451 (823)
T CHL00095 399 SRVRLINKQLPPAARELDKELRHILKDKDEAIRSQDFETAKQLRDREMEVR---------------------------TQ 451 (823)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------------------HH
T ss_conf 999987325867899999999999999999996744999999998899999---------------------------99
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHH
Q ss_conf 88748888886421115676543201106899999999975112677200016866789998766178667751000000
Q gi|254780877|r 479 LESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREK 558 (853)
Q Consensus 479 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ek 558 (853)
+..... ............+.|+.+||++|||+|||||+++++++|.++
T Consensus 452 ~~~~~~--------------------------------~~~~~~~~~~~~~~v~~~dI~~vvs~~tgiPv~~~~~~e~~~ 499 (823)
T CHL00095 452 IAAMKQ--------------------------------SKKTEEELQKEVPVVTEKDIAEIVSAWTGIPVNKLTKSESEK 499 (823)
T ss_pred HHHHHH--------------------------------HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHH
T ss_conf 999999--------------------------------987404432367720799999999998689847633458899
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 01235547767459489999999999874101236566512898726786168899999998723776530022447740
Q gi|254780877|r 559 FLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 559 Ll~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
|++|++.|+++||||++||++|+++|+++|+||++|+||+|||||+||||||||||||+||++|||++++||||||||||
T Consensus 500 l~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~ 579 (823)
T CHL00095 500 LIHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYM 579 (823)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 98788878778407699999999999999708998999746899878998877999999999974782025885351015
Q ss_pred CCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECC
Q ss_conf 34532013047711203566774211322156410220214414989999999984045788799977830331559548
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTS 718 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~Ts 718 (853)
|+||||||||||||||||++||+|||+||++|||||||||||||||+|||+||||||+|+|||+.||+|||+||||||||
T Consensus 580 E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIImTS 659 (823)
T CHL00095 580 EKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (823)
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEECC
T ss_conf 54207674589987667787882019887199869986213113889999887651688434899998843103999716
Q ss_pred CHHHHHHHCC-------------------HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5126876403-------------------267999999999862885772666815862889989999999999999999
Q gi|254780877|r 719 NLGAEYLIED-------------------GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLS 779 (853)
Q Consensus 719 N~G~~~~~~~-------------------~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~ 779 (853)
|+||+.+... .+.+++.++++++++|+|||+||||+||+|+||+.+++.+|+++++.++.+
T Consensus 660 NlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~ 739 (823)
T CHL00095 660 NLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFK 739 (823)
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 50558887413443433344543220235899999999999843798787327827861899999999999999999999
Q ss_pred HHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC-CEEEEE
Q ss_conf 998579899998899999997089822062157999998733499999970868897889999989-948989
Q gi|254780877|r 780 LIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDD-DNLNFR 851 (853)
Q Consensus 780 ~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~-~~~~~~ 851 (853)
++.+++|.+.+++++++||++.||||.||||||+|+|+++|++|||+.||+|.+++|++|+|++++ +++...
T Consensus 740 rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i~~~ls~~il~g~~~~g~~v~v~~~~~g~i~v~ 812 (823)
T CHL00095 740 RLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDSLVVDVDKEGKVKVL 812 (823)
T ss_pred HHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEE
T ss_conf 9996898599888999999995879776813688999999889999999748889969899997589978999
No 6
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=1922.12 Aligned_cols=773 Identities=60% Similarity=0.963 Sum_probs=728.5
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 71799999999999999982899633899999986188766899999739998999999999997459547897777069
Q gi|254780877|r 5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQVYLS 84 (853)
Q Consensus 5 kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~~~~S 84 (853)
+||+.++.+|..|+.+|+.++|.||++||||++|+.++.+. .++..+|++++.++..++.++.+.++..+. +.+|
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~s 75 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDLDKLRQELEEFIDKLPKVLGS---PYLS 75 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHH--HHHHHCCCCHHHHHHHHHHHHHCCCCCCCC---CCCC
T ss_conf 94889999999999999985798665999999997486317--999874999999999999998426777777---7878
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 899999999999999719870259998766872775178-8999759998999999998737788787775467610788
Q gi|254780877|r 85 QPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKK 163 (853)
Q Consensus 85 ~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~L~k 163 (853)
+.+.++++.|+..++.+++++|+++|+|+|++.+..+++ ++|...+++...+.+.+..++++....+.+++...++|++
T Consensus 76 ~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 155 (786)
T COG0542 76 PRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQDALEK 155 (786)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 77999999999998751576555899999986176227899998665777779999999734666677666532446998
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 64435699872985333335789999999633677786689528874077799999998734899844457437887313
Q gi|254780877|r 164 YCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 164 y~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
||+|||++|++|+||||||||+||+|++||||||+||||+|||||||||||||||||+||++|+||+.|++++|++||++
T Consensus 156 ~~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHH
T ss_conf 74114799865898877374799999999983568899847668988899999899999746999978758879971487
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCC-CCCHHHHHHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf 542174542024545899999986079976999636277302666554-3358888765312466048997448999997
Q gi|254780877|r 244 ALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDG-AMDASNLLKPSLARGELHCIGATTLDEYRKY 322 (853)
Q Consensus 244 ~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g-~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~ 322 (853)
+|+|||+||||||+|+|.+++|+.+++ ++||||||+|||||||+++| +|||||||||+||||+||||||||++|||||
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 674646535738999999999985179-8499982355405777666665125664677874587379973558999887
Q ss_pred HHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 30011132023111115777678999999978986541496101589999986333202457674778999999999875
Q gi|254780877|r 323 IEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVR 402 (853)
Q Consensus 323 iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~ 402 (853)
||||+||+||||+|.|.|||+++|+.||||++++||.||+|+|+|+||++||.||+|||+|||||||||||+|||||+++
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~A~~~ 394 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred HHHCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 33066778467510279989899999998778888770696433799999999998645567899467778899999997
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41022214578879999974456999850222356656899987689999999999998886566765599999998874
Q gi|254780877|r 403 MQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESM 482 (853)
Q Consensus 403 i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~ 482 (853)
++.. .|.+++++++++.+++.|+.++.++.|... +.....+..+++
T Consensus 395 l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~----------------------------~~~~~~~~~~~~----- 440 (786)
T COG0542 395 LEID-KPEELDELERELAQLEIEKEALEREQDEKE----------------------------KKLIDEIIKLKE----- 440 (786)
T ss_pred HCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH-----
T ss_conf 2034-884056899999998888988744036888----------------------------888778998754-----
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH
Q ss_conf 88888864211156765432011068999999999751126772000168667899987661786677510000000123
Q gi|254780877|r 483 RNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRI 562 (853)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l 562 (853)
..++..++++.. + |++++|++|||+|||||+++++++|.++|++|
T Consensus 441 ---------------------~~~~~~~~~~~~-~-------------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~l 485 (786)
T COG0542 441 ---------------------GRIPELEKELEA-E-------------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNL 485 (786)
T ss_pred ---------------------HHHHHHHHHHHH-C-------------CCHHHHHHHHHHHHCCCHHHHCHHHHHHHHHH
T ss_conf ---------------------100567888762-2-------------67989999999987898364133258899867
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC
Q ss_conf 55477674594899999999998741012365665128987267861688999999987237765300224477403453
Q gi|254780877|r 563 ETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS 642 (853)
Q Consensus 563 ~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~ 642 (853)
++.|+++|+||++||++|+++|+++|+||.+|+||+|||||+||||||||||||+||++|||++++|||||||||||+||
T Consensus 486 e~~L~~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs 565 (786)
T COG0542 486 ERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS 565 (786)
T ss_pred HHHHHCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHH
T ss_conf 99973650173999999999999985699999987357886678865699999999999659974445545687777877
Q ss_pred CCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHH
Q ss_conf 20130477112035667742113221564102202144149899999999840457887999778303315595485126
Q gi|254780877|r 643 VSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGA 722 (853)
Q Consensus 643 vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~ 722 (853)
||||||||||||||+|||+|||+||++|||||||||||||||+|+|+||||||+|+|||++||+|||+|||||||||+|+
T Consensus 566 VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 566 VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred HHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECCEEEEEEECCCCH
T ss_conf 99872799987200655400376606998688841264408899999999846780554899888430028998450265
Q ss_pred HHHHCC--------HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 876403--------267999999999862885772666815862889989999999999999999998579899998899
Q gi|254780877|r 723 EYLIED--------GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQV 794 (853)
Q Consensus 723 ~~~~~~--------~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~ 794 (853)
+.+.+. .+..++.+++.++++|+|||+||+|+||+|+||+++++.+|++++|+++.++|.++++++++++++
T Consensus 646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a 725 (786)
T COG0542 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEA 725 (786)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 98975313432100467889999999853899898512617850679989999999999999999998689559988899
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
Q ss_conf 9999970898220621579999987334999999708688978899999899489897
Q gi|254780877|r 795 IDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDDNLNFRV 852 (853)
Q Consensus 795 ~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~~~~~~~~ 852 (853)
++||+++||||.||||||+|+|+++|++|||+.+|.+.+.+|.+|.|+++++.+.|..
T Consensus 726 ~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~~~~~~~~~v~v~~~~~~~~~~~ 783 (786)
T COG0542 726 KDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDVDDEKIKFVS 783 (786)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEE
T ss_conf 9999996468776736799999999989999999846657996799995176378863
No 7
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=0 Score=1803.87 Aligned_cols=723 Identities=39% Similarity=0.673 Sum_probs=672.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCC
Q ss_conf 1799999999999999982899633899999986188766899999739998999999999997459547---8977770
Q gi|254780877|r 6 YSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVT---GGGAQVY 82 (853)
Q Consensus 6 FS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~---~~~~~~~ 82 (853)
||+.++.+|+.|+++|++++|.||++||||++|++++. +..+|..+++|++.++.+++.++++.+... .....+.
T Consensus 2 ~s~~l~~~L~~A~~~A~~~~H~~v~~EHlLlaLl~~~~--~~~~L~~~~~d~~~l~~~l~~~i~~~~~~~~~~~~~~~~~ 79 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH--HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 89799999999999999829983229999999986941--8999998599999999999999972588778887756778
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHHCCC----CCCC------
Q ss_conf 69899999999999999719870259998766872775178-899975999899999999873778----8787------
Q gi|254780877|r 83 LSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGR----VADS------ 151 (853)
Q Consensus 83 ~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~~~~----~~~~------ 151 (853)
+|..++++|++|+.+++.+|+++|+++|+|+||+.+.++++ ++|.+.|++..++.+.+.+..... ....
T Consensus 80 ~t~~~~rvl~~A~~~a~~~g~~~v~~~~lLlall~e~~~~a~~~L~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (758)
T PRK11034 80 PTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSDPGSQPNS 159 (758)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 77789999999999999839983049999999971785589999997799889999999722433443334455567665
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 77546761078864435699872985333335789999999633677786689528874077799999998734899844
Q gi|254780877|r 152 VNAEQGFDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPES 231 (853)
Q Consensus 152 ~~~e~~~~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~ 231 (853)
.......++|++||+|||++|++|++||||||++||+|++||||||+||||||||||||||||||||||++|++|+||+.
T Consensus 160 ~~~~~~~~~L~ky~~dLt~~Ar~gklDPviGR~~Ei~r~i~iL~Rr~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~ 239 (758)
T PRK11034 160 EEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 33444235899985647999982899987384899999999997632589602169998699999999999973899765
Q ss_pred HCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC-CCCCHHHHHHHHHCCCCEEE
Q ss_conf 45743788731354217454202454589999998607997699963627730266655-43358888765312466048
Q gi|254780877|r 232 LKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTD-GAMDASNLLKPSLARGELHC 310 (853)
Q Consensus 232 l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~-g~~Daan~LKP~LarG~l~~ 310 (853)
|+|++||+||+++|+|||+||||||+|||.|++|++.+ +++||||||+|||||||+++ |+|||||||||+||||+|||
T Consensus 240 L~~~~i~~Ldl~~LiAGtkyRGefEeRlk~vi~e~~~~-~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~ 318 (758)
T PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_pred HCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 58988998458778616864154999999999999857-98599980434422688767776467887457874697239
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA 390 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA 390 (853)
||||||+|||||||||+||+||||+|.|+|||.++|+.||+|++++||.||+|+|+|+||++||.||+|||+||+|||||
T Consensus 319 IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~lPDKA 398 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred EEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99437799875032147888428265318999899999999899987323695774389999999997650268896199
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987541022214578879999974456999850222356656899987689999999999998886566765
Q gi|254780877|r 391 IDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKIL 470 (853)
Q Consensus 391 IDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 470 (853)
|||||||||++++...+.
T Consensus 399 IdllDea~a~~~l~~~~~-------------------------------------------------------------- 416 (758)
T PRK11034 399 IDVIDEAGARARLMPVSK-------------------------------------------------------------- 416 (758)
T ss_pred HHHHHHHHHHHHCCHHHH--------------------------------------------------------------
T ss_conf 999999988875134566--------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 59999999887488888864211156765432011068999999999751126772000168667899987661786677
Q gi|254780877|r 471 YVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDK 550 (853)
Q Consensus 471 ~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~k 550 (853)
....|+.+||+.|||+|||||+.+
T Consensus 417 --------------------------------------------------------~~~~v~~~di~~vv~~~t~ip~~~ 440 (758)
T PRK11034 417 --------------------------------------------------------RKKTVNVADIESVVARIARIPEKS 440 (758)
T ss_pred --------------------------------------------------------HCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf --------------------------------------------------------316589999999998750360767
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 51000000012355477674594899999999998741012365665128987267861688999999987237765300
Q gi|254780877|r 551 MLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMI 630 (853)
Q Consensus 551 l~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~li 630 (853)
++++|.++|++|++.|+++||||++||++|+++|+++|+||++|+||+|||||+||||||||||||+||+.| +.+||
T Consensus 441 ~~~~~~~~l~~le~~l~~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L---~~~li 517 (758)
T PRK11034 441 VSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELL 517 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---HHHHH
T ss_conf 767799999989999877874549999999999999863888999970589997899877799999999998---66772
Q ss_pred CCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECC
Q ss_conf 22447740345320130477112035667742113221564102202144149899999999840457887999778303
Q gi|254780877|r 631 RIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFR 710 (853)
Q Consensus 631 r~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~ 710 (853)
|||||||||+|+||||||||||||||+|||+|||+||++|||||||||||||||+|||+||||||+|+|||+.||+|||+
T Consensus 518 r~DMSEy~e~hsvsrLiGaPPGYVGy~eGG~Lte~Vr~~PysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~ 597 (758)
T PRK11034 518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred CCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECE
T ss_conf 14266531201477744899866676777701287873987799733675639899998873237783017999988440
Q ss_pred CCEEEECCCHHHHHHHCCH-----HHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3155954851268764032-----67999999999862885772666815862889989999999999999999998579
Q gi|254780877|r 711 NTLIIMTSNLGAEYLIEDG-----DSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERN 785 (853)
Q Consensus 711 n~iii~TsN~G~~~~~~~~-----~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~ 785 (853)
|||||||||+|++.+.... ......++++++++|+|||+||||+||+|+||+.+++.+|+++++.++.++|+.++
T Consensus 598 NtiIImTSN~Ga~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred EEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 01999825617487864214755420359999999954798677236747863889999999999999999999999789
Q ss_pred CEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC--CEEEEEE
Q ss_conf 899998899999997089822062157999998733499999970868897889999989--9489897
Q gi|254780877|r 786 ISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDD--DNLNFRV 852 (853)
Q Consensus 786 i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~--~~~~~~~ 852 (853)
|.++++++|++||+++||||.||||||+|+|+++|.+|||+.||+|.+++|++|+|++++ +.|+|++
T Consensus 678 i~l~~~~~a~~~l~~~gyd~~~GARpl~R~I~~~i~~~La~~il~g~~~~g~~v~v~~~~~~~~l~f~~ 746 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGF 746 (758)
T ss_pred CEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEE
T ss_conf 859988999999998488945371128899999988999999972988898989999978998799996
No 8
>KOG1051 consensus
Probab=100.00 E-value=0 Score=1424.42 Aligned_cols=827 Identities=45% Similarity=0.674 Sum_probs=774.9
Q ss_pred CHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 92371799999999999999982899633899999986188766899999739-99899999999999745954789777
Q gi|254780877|r 2 NSDKYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSG-GDIAQLKDYNQTVLSKIPKVTGGGAQ 80 (853)
Q Consensus 2 d~~kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~g-vd~~~L~~~le~~L~k~~k~~~~~~~ 80 (853)
....||+++..+|..|+.+|++++|.+|||+|++.+||..++|.+++++.+.+ ++...+...+...++++|+..+++..
T Consensus 8 ~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt~~~p~~s 87 (898)
T KOG1051 8 VQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPTSYGPPVS 87 (898)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 47650799999999999999970888764699999997098317999999647521778998888998734688998541
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-HCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 706989999999999999971987025999876687-2775178899975999899999999873778878777546761
Q gi|254780877|r 81 VYLSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMV-METGGIGESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFD 159 (853)
Q Consensus 81 ~~~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl-~e~~s~a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~ 159 (853)
..++.++++++..|......++.++|.++|..+.++ .+++++..+|.++|++...++..+.+.++....++.++....+
T Consensus 88 n~l~aalkr~qa~qrr~~~~~~~~~vkvE~~qli~silDdp~vsrv~rEag~~s~~vK~~ve~~~g~~~~~~~~~~~~~~ 167 (898)
T KOG1051 88 NALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQFRSPSRGPLWPLL 167 (898)
T ss_pred HHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 37699999889998734624234134476674631130570799999995589589999886302445777767764346
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEE
Q ss_conf 078864435699872985333335-7899999996336777866895288740777999999987348998444574378
Q gi|254780877|r 160 ALKKYCRDLTEEARNGKLDPVIGR-DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLM 238 (853)
Q Consensus 160 ~L~ky~~DLTe~Ar~GkLDPVIGR-e~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~ 238 (853)
.|.+|+.|||.+|++|++|||||| |+||+|+++||+||+||||+|||+||||||++++|+|+||+.|+||..|.+++++
T Consensus 168 ~L~~~~~dl~p~~~~gk~dPvigr~deeirRvi~iL~Rr~k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~ 247 (898)
T KOG1051 168 FLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLI 247 (898)
T ss_pred HHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 78750645672443368788658852889999999814678996698368777216899999876617888533455248
Q ss_pred EEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 87313542174542024545899999986079976999636277302666554335888876531246604899744899
Q gi|254780877|r 239 ALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDE 318 (853)
Q Consensus 239 ~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~E 318 (853)
.||+++|+||++||||||+|++.+++++....+.|||||||+|+++|+|++.|+||++|+|||.|+||+++||||||.+|
T Consensus 248 ~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGatT~e~ 327 (898)
T KOG1051 248 ALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGATTLET 327 (898)
T ss_pred EEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 98700003586421278899999999985479868998321432204887411899998658888559748972250999
Q ss_pred HHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99973001113202311111577767899999997898654149610158999998633320245767477899999999
Q gi|254780877|r 319 YRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 319 yrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
|+|||||||||+||||.+.|.+||.++|+.||+|++++||-||||+|+++|+..|+.+|.||+++|++||+|||+.||||
T Consensus 328 Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~ 407 (898)
T KOG1051 328 YRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAA 407 (898)
T ss_pred HHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCCHHHHHH
T ss_conf 99987638205418551671357655314565554342011347712543342202101232123768331045889999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98754102221457887999997445699985022235665689998768999999999999888656676559999999
Q gi|254780877|r 399 ARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKR 478 (853)
Q Consensus 399 A~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 478 (853)
|.++++..+.|..|+.+++....++.++.+|+++.|....+++. .+.+...+..+.++...|..++.....++..+..
T Consensus 408 a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~ 485 (898)
T KOG1051 408 ALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKLKKNS 485 (898)
T ss_pred HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCC
T ss_conf 99863123277988754530000678999999865053223433--2345654311332134433535687664135687
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHH
Q ss_conf 88748888886421115676543201106899999999975112677200016866789998766178667751000000
Q gi|254780877|r 479 LESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREK 558 (853)
Q Consensus 479 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ek 558 (853)
.+.... +..+.+..++..+.++.+..+|..+.+ . ...+ ..+.++|+.++|+|||||+.++.+.|.++
T Consensus 486 ~~~~~~-~~k~~r~~d~~~~~~l~~~~~p~~~~~-----~--~~~~-----~~~~~~i~~~~s~~tgip~~~~~~~e~~~ 552 (898)
T KOG1051 486 LDRNSL-LAKAHRPNDYTRETDLRYGRIPDELSE-----K--SNDN-----QGGESDISEVVSRWTGIPVDRLAEAEAER 552 (898)
T ss_pred CCHHHH-HHCCCCCCCCCHHHHCCCCCCCHHHHH-----H--CCCC-----CCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 001023-421468877632120123566505543-----2--0113-----47762055540232178214431667899
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 01235547767459489999999999874101236566512898726786168899999998723776530022447740
Q gi|254780877|r 559 FLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 559 Ll~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
|.+|++.|+++|+||++||.+|+.+|+++|+|+.+| +|+++|||+||||||||+|||+||+++||++.+|||+||||||
T Consensus 553 l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ 631 (898)
T KOG1051 553 LKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQ 631 (898)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHH
T ss_conf 999999997544663778999999998432035788-8885899978884138999999999972886426896145555
Q ss_pred CCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECC
Q ss_conf 34532013047711203566774211322156410220214414989999999984045788799977830331559548
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTS 718 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~Ts 718 (853)
| ||+|+|+|||||||++||+|||+||++|||||||||||||||+|++.|+|+||+|++||++||+|||+||||||||
T Consensus 632 e---vskligsp~gyvG~e~gg~LteavrrrP~sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051 632 E---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred H---HHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEC
T ss_conf 5---6530489955546305778889971699659998302222888999999998627400588867504645999942
Q ss_pred CHHHHHHHCCHH----------------HHHHHHHHHHH----HHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 512687640326----------------79999999998----6288577266681586288998999999999999999
Q gi|254780877|r 719 NLGAEYLIEDGD----------------SVHDKVMGIVR----SAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVL 778 (853)
Q Consensus 719 N~G~~~~~~~~~----------------~~~~~~~~~l~----~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~ 778 (853)
|+|+..+..... ..+..+++.++ .+|+|||+||+|++++|+||+.+++.+|+..++.++.
T Consensus 709 n~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~ 788 (898)
T KOG1051 709 NVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIE 788 (898)
T ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 63166664045410001231000123320133333432013565568678555540554142555666655566778888
Q ss_pred HHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
Q ss_conf 9998579899998899999997089822062157999998733499999970868897889999989948
Q gi|254780877|r 779 SLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDDNL 848 (853)
Q Consensus 779 ~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~~~~ 848 (853)
+++.++++.+.+++.+.++++.++||+.||||||+|.|++.+.+.++..++ +.+.++.+++|+..++..
T Consensus 789 ~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~~~~ 857 (898)
T KOG1051 789 KRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVADGWS 857 (898)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHE-EEECCCCEEEEEECCCCC
T ss_conf 776666799998899976653057684777668999999998877765311-432688569997425433
No 9
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=100.00 E-value=0 Score=411.47 Aligned_cols=160 Identities=68% Similarity=1.107 Sum_probs=152.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEE
Q ss_conf 65128987267861688999999987237765300224477403453201304771120356677421132215641022
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVL 675 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil 675 (853)
||+|+|||+||||||||+|||+||+.||+++++|+++|||||+++|++++|+|+|||||||+++|.||++++++||||||
T Consensus 1 ~p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~Vil 80 (168)
T pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80 (168)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEE
T ss_conf 98379998898998999999999999679853448855756542569998705899872624265078999838984898
Q ss_pred EHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHC--------CHHHHHHHHHHHHHHHCCHH
Q ss_conf 0214414989999999984045788799977830331559548512687640--------32679999999998628857
Q gi|254780877|r 676 FDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIE--------DGDSVHDKVMGIVRSAFKPE 747 (853)
Q Consensus 676 ~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~--------~~~~~~~~~~~~l~~~f~pe 747 (853)
|||||||||+||++|||+||+|+++|+.||+|||+|||||||||+|++.+.. +.+..+..+.+.++++|+||
T Consensus 81 lDEIeKa~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 160 (168)
T pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISDASRLGKSPDYELLKELVMDLLKKGFIPE 160 (168)
T ss_pred EHHHHHHCHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 65776658999999998705870636999678446479997687372999986304678547999999999998698846
Q ss_pred HHCCCCCE
Q ss_conf 72666815
Q gi|254780877|r 748 FLNRLDEI 755 (853)
Q Consensus 748 flnRid~i 755 (853)
|+||||.|
T Consensus 161 flnRid~i 168 (168)
T pfam07724 161 FLGRLPII 168 (168)
T ss_pred HHCCCCCC
T ss_conf 73575839
No 10
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.96 E-value=6.3e-26 Score=229.68 Aligned_cols=436 Identities=20% Similarity=0.304 Sum_probs=269.9
Q ss_pred HCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 00111320231111157776789999999789865414--9610158999998633320245767477899999999987
Q gi|254780877|r 324 EKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHH--KVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARV 401 (853)
Q Consensus 324 EkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H--~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~ 401 (853)
..++.|.-+.+.+.-.+++..+.-.+++.+...++++- +-.+.++++...-.. .+ |++ |.|.+|+.+
T Consensus 105 ~~~pyl~A~Ve~l~~~~~d~~E~EAL~r~li~~f~~~v~l~~~ip~E~l~~l~~i-----dd---p~k---LAD~IAs~L 173 (784)
T PRK10787 105 DNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSI-----DD---PAR---LADTIAAHM 173 (784)
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC-----CC---HHH---HHHHHHHCC
T ss_conf 4789689999980688889668999999999999999985767999999999837-----88---899---999987327
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54102221457887999997445699985022235665689998768999999999999888656676559999999887
Q gi|254780877|r 402 RMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLES 481 (853)
Q Consensus 402 ~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~ 481 (853)
.+....+...|... .--.+++.-...|.++.+ +.++++++ ...-+..-....+.--|++++..
T Consensus 174 ~ls~eeKQeLLE~~-dvkeRLekll~lL~kElE------ileLe~kI----------~~kVkekm~K~QREyyLREQLka 236 (784)
T PRK10787 174 PLKLADKQSVLEMS-DVNERLEYLMAMMESEID------LLQVEKRI----------RNRVKKQMEKSQREYYLNEQMKA 236 (784)
T ss_pred CCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHH------HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999998638-999999999999999999------99999999----------99999764067789998741022
Q ss_pred HHHHHHHHHHCC-HHHHHH-HHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHH
Q ss_conf 488888864211-156765-432011068999999999751126772000168667899987661786677510000000
Q gi|254780877|r 482 MRNELAIAQRQG-HFERAG-ELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKF 559 (853)
Q Consensus 482 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekL 559 (853)
++.++....... +.+... .+....+|+.-++. +..+......|....-...-+..-+--.+.+||++.+.+.. -|
T Consensus 237 Iq~ELGe~~~~~~e~~~~~~ki~~~~~p~~~~~~--~~~El~rl~~~~~~s~E~~v~r~YLd~l~~LPW~~~t~d~~-dl 313 (784)
T PRK10787 237 IQKELGEMDDAPDENEALKRKIDAAKMPKEAKEK--AEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKK-DL 313 (784)
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CH
T ss_conf 2022056764124899999999877999899999--99999999718998941889999999997599888878756-99
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 12355477674594899999999998741012365665128987267861688999999987237765300224477403
Q gi|254780877|r 560 LRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME 639 (853)
Q Consensus 560 l~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e 639 (853)
...++.|.+.-+|-+..-+.|...+-..+.. .+...|| ++|+||+|||||.|||++|+.| .+.++|+-++--.+
T Consensus 314 ~~A~~iLd~dHyGL~~vKeRile~lAv~~~~-~~~kg~I--lclvGpPGvGKTSl~~sIA~al---~r~f~rislGGv~D 387 (784)
T PRK10787 314 RQAQEILDTDHYGLERVKDRILEYLAVQSRV-NKIKGPI--LCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVRD 387 (784)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCCCCE--EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCC
T ss_conf 9999987654306577999999999999862-4677877--9964699877246999999985---89869980688788
Q ss_pred CCCC----CHHHCCCCHHCCCCCCCCCCHHHHC----CCCCEEEEHHHHHCCHH----HHHHHHHHHH---CCEEECCC-
Q ss_conf 4532----0130477112035667742113221----56410220214414989----9999999840---45788799-
Q gi|254780877|r 640 KHSV----SRLIGSPPGYVGYEEGGALTEAVRR----HPYQVVLFDEIEKAHSD----VHNILLQVLD---DGRLTDSQ- 703 (853)
Q Consensus 640 ~~~v----s~LiGappGYvG~~~gg~Lte~vr~----~P~sVil~DEiEKah~~----v~~~llqild---~G~ltd~~- 703 (853)
...+ -.-+||-|| ....++++ || |+|||||+|-..+ --..||.+|| +-.++|.+
T Consensus 388 eaeirGHrrTYvgampG--------rii~~l~~a~~~nP--v~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl 457 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPG--------KLIQKMAKVGVKNP--LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYL 457 (784)
T ss_pred HHHHCCCCCCCCCCCCH--------HHHHHHHHHCCCCC--EEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEE
T ss_conf 88825643343443683--------89999997489885--665003555224558998899998459765564000322
Q ss_pred CCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97783033155954851268764032679999999998628857726668158628899899999999999999999985
Q gi|254780877|r 704 GRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKE 783 (853)
Q Consensus 704 G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~ 783 (853)
+-..|+++++||+|.|-= . .++.+++|+ ++|-+..++.++...|+..+| +.+.+++
T Consensus 458 ~~~~DlS~v~Fi~TaN~~--------------------~-ip~pLlDRm-E~i~~~gYt~~eK~~Ia~~~l--~p~~~~~ 513 (784)
T PRK10787 458 EVDYDLSDVMFVATSNSM--------------------N-IPAPLLDRM-EVIRLSGYTEDEKLNIAKRHL--LPKQIER 513 (784)
T ss_pred ECCCCHHHEEEEEECCCC--------------------C-CCHHHHHHE-EEEEECCCCHHHHHHHHHHHC--HHHHHHH
T ss_conf 046452225899732767--------------------7-876776312-155411676788999999745--3999998
Q ss_pred CCC---EEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 798---9999889999999708982206215799999873349999997086
Q gi|254780877|r 784 RNI---SMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQT 832 (853)
Q Consensus 784 ~~i---~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~ 832 (853)
+|+ .+.++++++.+|++ .|..+.|.|.|+|.|.+-. ...+..++.+.
T Consensus 514 ~gl~~~~~~~~~~~~~~ii~-~ytrEaGvR~ler~i~~i~-rk~~~~~~~~~ 563 (784)
T PRK10787 514 NALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLC-RKAVKQLLLDK 563 (784)
T ss_pred HCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCHHHHHHHHH-HHHHHHHHCCC
T ss_conf 28996567439999999875-3365444251688999999-99999997078
No 11
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.96 E-value=2.7e-27 Score=240.80 Aligned_cols=252 Identities=26% Similarity=0.449 Sum_probs=202.1
Q ss_pred HHHHHHHCCCHHHHHHC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------HCCCC-CCCCC-CEEEEEEC
Q ss_conf 99876617866775100-000001235547767459489999999999874---------10123-65665-12898726
Q gi|254780877|r 538 NIVSRWTGIPVDKMLES-DREKFLRIETEISKSVIGQSAAVESVSNALRRF---------RAGLQ-DPQRP-MGSFMFLG 605 (853)
Q Consensus 538 ~vvS~~TGIPv~kl~~~-E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~---------~~gl~-~~~~p-~~~flf~G 605 (853)
.-+--+|-+||++.+.+ +.--|.+..+.|.+--+|=+..-+.|..-|-.. +--|. +-..| | ++|+|
T Consensus 380 nYLDwl~~lPW~~~S~~f~n~Dl~~A~~~LD~DHYGL~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqI--lClvG 457 (941)
T TIGR00763 380 NYLDWLTDLPWGKYSKEFDNLDLKRAKEILDEDHYGLKKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQI--LCLVG 457 (941)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE--EEEEC
T ss_conf 9999998377221470266521899999831678888773034135888989998764036444778888767--87207
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCC------CHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH----CCCCCEEE
Q ss_conf 786168899999998723776530022------44774034532013047711203566774211322----15641022
Q gi|254780877|r 606 PTGVGKTELVKSLARLLFDDENSMIRI------DMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR----RHPYQVVL 675 (853)
Q Consensus 606 ptGvGKTelak~la~~lf~~~~~lir~------dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr----~~P~sVil 675 (853)
|+|||||.||+++|++| ++.|+|| |=+|=.- |= =.-|||-||- +..+++ .|| |+|
T Consensus 458 PPGVGKTSlg~SIA~AL---nRkFvR~SlGG~~DeAEIrG-HR-RTYvGAMPGr--------iiQ~lk~~~t~NP--l~L 522 (941)
T TIGR00763 458 PPGVGKTSLGKSIAKAL---NRKFVRFSLGGVRDEAEIRG-HR-RTYVGAMPGR--------IIQGLKKAKTKNP--LIL 522 (941)
T ss_pred CCCCCHHHHHHHHHHHH---CCEEEEEEECCCEEHHHCCC-CC-CCCCCCCHHH--------HHHHHHHCCCCCC--EEE
T ss_conf 26954222789999996---88049995267220311278-64-3203467257--------8999876041588--068
Q ss_pred EHHHHHCC--HHH----HHHHHHHHH---CCEEECCC-CCEEECCCCE--EEECCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 02144149--899----999999840---45788799-9778303315--595485126876403267999999999862
Q gi|254780877|r 676 FDEIEKAH--SDV----HNILLQVLD---DGRLTDSQ-GRTVDFRNTL--IIMTSNLGAEYLIEDGDSVHDKVMGIVRSA 743 (853)
Q Consensus 676 ~DEiEKah--~~v----~~~llqild---~G~ltd~~-G~~v~f~n~i--ii~TsN~G~~~~~~~~~~~~~~~~~~l~~~ 743 (853)
+|||+|-. .++ ...||.||| +-.+.|.+ .-.+|+++.+ ||+|+|- +- .
T Consensus 523 lDEIDK~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYldvp~DLS~V~CyFi~TAN~----~d----------------~ 582 (941)
T TIGR00763 523 LDEIDKIGLKSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVLCYFIATANS----ID----------------T 582 (941)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHEEECCCC----CC----------------C
T ss_conf 620220016788655637888641286436042553002340042002100024475----76----------------7
Q ss_pred CCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE---EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88577266681586288998999999999999999999857989---999889999999708982206215799999873
Q gi|254780877|r 744 FKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS---MDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYI 820 (853)
Q Consensus 744 f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~---l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i 820 (853)
-|+.||+|| |||-...++.++...|++.+| +.+.+..+|+. +.++++|+..|++. |.++.|.|+|+|-|++ |
T Consensus 583 IP~PLLDRM-EvI~lsGY~~~EK~~IA~~yL--iP~~~~~~GL~~~~l~~~d~al~~lI~~-YtREaGVRNL~r~I~~-i 657 (941)
T TIGR00763 583 IPRPLLDRM-EVIELSGYTEEEKLEIAKKYL--IPKALEDHGLKPDELKISDEALLLLIKY-YTREAGVRNLERQIEK-I 657 (941)
T ss_pred CCCCCCCCE-EEEECCCCCHHHHHHHHHHCC--HHHHHHHHCCCCCCEEECHHHHHHHHHH-HHHHHCCHHHHHHHHH-H
T ss_conf 772213740-245238887678999998547--1367987088813221268999999987-5132021338999999-9
Q ss_pred HHHHHHHHHCC
Q ss_conf 34999999708
Q gi|254780877|r 821 QNPLAERVLSQ 831 (853)
Q Consensus 821 ~~~la~~il~~ 831 (853)
....|..++..
T Consensus 658 ~RK~A~~~~~~ 668 (941)
T TIGR00763 658 CRKAAVKLVEQ 668 (941)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999871
No 12
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-23 Score=210.99 Aligned_cols=442 Identities=24% Similarity=0.356 Sum_probs=265.6
Q ss_pred HHCCHHHHHCCCEEECCCCC-HHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 30011132023111115777-678999999978986541496--101589999986333202457674778999999999
Q gi|254780877|r 323 IEKDPALARRFQSLLVGEPT-VTDTISILRGLKERYEQHHKV--RISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASA 399 (853)
Q Consensus 323 iEkD~Al~RRFq~i~V~Eps-~~~t~~iL~gl~~~yE~~H~V--~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A 399 (853)
+..+..+.-.++.+.-.+-. ..+.-.+.+.+.+.+|++-.. ++..+.+.... .|. -|+ .|.|..+|
T Consensus 104 ~~~~~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~-----~i~---~~~---klad~iaa 172 (782)
T COG0466 104 SDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPPEELQSLN-----SID---DPG---KLADTIAA 172 (782)
T ss_pred CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-----CCC---CHH---HHHHHHHH
T ss_conf 2677716999886377765432679999999999999999845578999997775-----156---457---89999998
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87541022214578879999974456999850222356656899987689999999999998886566765599999998
Q gi|254780877|r 400 RVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRL 479 (853)
Q Consensus 400 ~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l 479 (853)
...+....+.+.+... .--.+++.....+..+.+ +.++++++...-++. -+...+.--|++++
T Consensus 173 ~l~~~~~~kQ~iLe~~-~v~~Rlek~l~~l~~ei~------~~~~ek~I~~kVk~~----------meK~QREyyL~EQl 235 (782)
T COG0466 173 HLPLKLEEKQEILETL-DVKERLEKLLDLLEKEID------LLQLEKRIRKKVKEQ----------MEKSQREYYLREQL 235 (782)
T ss_pred HCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_conf 5778789999998718-899999999999999999------999999999999998----------77888999999999
Q ss_pred HHHHHHHHHHHHCC-HHHHH-HHHHHCCHHHHHHH--HHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCC
Q ss_conf 87488888864211-15676-54320110689999--9999975112677200016866789998766178667751000
Q gi|254780877|r 480 ESMRNELAIAQRQG-HFERA-GELAYGLIPKTEKE--LDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESD 555 (853)
Q Consensus 480 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E 555 (853)
..++.++....... +.+.. ..+....+|..-++ ..++.+. ..|....-...-|..-+--.+.+||.+-+.+.
T Consensus 236 KaIqkELG~~~d~~~e~~~~~~kie~~~~p~evkek~~~El~kL----~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~ 311 (782)
T COG0466 236 KAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKL----ETMSPMSAEATVIRNYLDWLLDLPWGKRSKDK 311 (782)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999858886545589999999751699989999999999998----50799991688998999999828876554213
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 00001235547767459489999999999874101236566512898726786168899999998723776530022447
Q gi|254780877|r 556 REKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMS 635 (853)
Q Consensus 556 ~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMs 635 (853)
.+ |.+.++.|.+.-+|-+..-+.|...+-..+. ...-..|| ++|+||+|||||.|+|.+|+.| .+.++||-..
T Consensus 312 ~D-l~~a~~iLd~dHYGLekVKeRIlEyLAV~~l-~~~~kGpI--LcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLG 384 (782)
T COG0466 312 LD-LKKAEKILDKDHYGLEKVKERILEYLAVQKL-TKKLKGPI--LCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLG 384 (782)
T ss_pred HH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCE--EEEECCCCCCCHHHHHHHHHHH---CCCEEEEECC
T ss_conf 22-9999987443556711689999999999986-14678857--9997899887011899999995---8977999547
Q ss_pred HHCCCCCC----CHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHH----HHHHHHHHHH---CCEEECCC-
Q ss_conf 74034532----013047711203566774211322156410220214414989----9999999840---45788799-
Q gi|254780877|r 636 EYMEKHSV----SRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSD----VHNILLQVLD---DGRLTDSQ- 703 (853)
Q Consensus 636 ey~e~~~v----s~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~----v~~~llqild---~G~ltd~~- 703 (853)
--.+...+ -.-|||-||-+=. -+..+=..|| |+|+|||+|...+ =-..||.+|| +-.+.|.+
T Consensus 385 GvrDEAEIRGHRRTYIGaMPGrIiQ----~mkka~~~NP--v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYL 458 (782)
T COG0466 385 GVRDEAEIRGHRRTYIGAMPGKIIQ----GMKKAGVKNP--VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYL 458 (782)
T ss_pred CCCCHHHHCCCCCCCCCCCCHHHHH----HHHHHCCCCC--EEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCC
T ss_conf 6542777535531233568728999----9998677687--478640333167777886888886269765676122201
Q ss_pred CCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97783033155954851268764032679999999998628857726668158628899899999999999999999985
Q gi|254780877|r 704 GRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKE 783 (853)
Q Consensus 704 G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~ 783 (853)
.-..|+++.+||+|+|- + ...|..+++|+ +||-+..++.++...|+..+| +.+.+++
T Consensus 459 ev~yDLS~VmFiaTANs----l----------------~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L--iPk~~~~ 515 (782)
T COG0466 459 EVPYDLSKVMFIATANS----L----------------DTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL--IPKQLKE 515 (782)
T ss_pred CCCCCHHHEEEEEECCC----C----------------CCCCHHHHCCE-EEEEECCCCHHHHHHHHHHHC--CHHHHHH
T ss_conf 67664432588860375----1----------------32986784303-056426888699999999844--5689997
Q ss_pred CCCE---EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7989---99988999999970898220621579999987334999999708688
Q gi|254780877|r 784 RNIS---MDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTIS 834 (853)
Q Consensus 784 ~~i~---l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~ 834 (853)
+|++ +.++|+|+.+|++. |..+.|.|+|+|.|.+ +....+..++.+..+
T Consensus 516 ~gL~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~k-i~RK~~~~i~~~~~k 567 (782)
T COG0466 516 HGLKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAK-ICRKAAKKILLKKEK 567 (782)
T ss_pred CCCCCCCEEECHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCC
T ss_conf 599823355658999999998-7676210389999999-999999999725756
No 13
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.92 E-value=3.9e-23 Score=207.03 Aligned_cols=251 Identities=27% Similarity=0.482 Sum_probs=180.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHH----HHHHCCCCCCC---CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 235547767459489999999999----87410123656---65128987267861688999999987237765300224
Q gi|254780877|r 561 RIETEISKSVIGQSAAVESVSNAL----RRFRAGLQDPQ---RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRID 633 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~v~~~~----~~~~~gl~~~~---~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~d 633 (853)
.+.+.|.+.||||++|-+.++-|+ +|.+......+ =+-...|++||||+|||+||++||+.| .-.|+.-|
T Consensus 65 eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l---~vPF~iaD 141 (411)
T PRK05342 65 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIAD 141 (411)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
T ss_conf 999986214028488889999999999999860213356652134538998999977889999999986---99989986
Q ss_pred HHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHH-------HHCCCCCEEEEHHHHHCC--------------HHHHHHHHH
Q ss_conf 47740345320130477112035667742113-------221564102202144149--------------899999999
Q gi|254780877|r 634 MSEYMEKHSVSRLIGSPPGYVGYEEGGALTEA-------VRRHPYQVVLFDEIEKAH--------------SDVHNILLQ 692 (853)
Q Consensus 634 Msey~e~~~vs~LiGappGYvG~~~gg~Lte~-------vr~~P~sVil~DEiEKah--------------~~v~~~llq 692 (853)
-.-|+| .||||-|--..|..- |.+--+.+|.+|||+|-. -.|+..||.
T Consensus 142 AT~lTE-----------aGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLk 210 (411)
T PRK05342 142 ATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK 210 (411)
T ss_pred ECEECC-----------CCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 120012-----------674560799999999998288899883682888502345424788888777651248999999
Q ss_pred HHHCCEEEC---CCCC--------EEECCCCEEEECCCH-HHHHHHCC----------------HHHHHHHH------HH
Q ss_conf 840457887---9997--------783033155954851-26876403----------------26799999------99
Q gi|254780877|r 693 VLDDGRLTD---SQGR--------TVDFRNTLIIMTSNL-GAEYLIED----------------GDSVHDKV------MG 738 (853)
Q Consensus 693 ild~G~ltd---~~G~--------~v~f~n~iii~TsN~-G~~~~~~~----------------~~~~~~~~------~~ 738 (853)
++ ||+... ..|| .||-+|-+||+.--. |-+.+... .......+ .+
T Consensus 211 ii-EGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~D 289 (411)
T PRK05342 211 IL-EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPED 289 (411)
T ss_pred HH-CCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHH
T ss_conf 87-58714118887777877651676147179991155335899998635788767788766411000567876279878
Q ss_pred HHHHHCCHHHHCCCCCEEECCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99862885772666815862889989999999----99999999999857989999889999999708982206215799
Q gi|254780877|r 739 IVRSAFKPEFLNRLDEIILFEKLRKEDMAKIV----RIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKR 814 (853)
Q Consensus 739 ~l~~~f~peflnRid~iv~F~~l~~~~~~~i~----~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r 814 (853)
.++--|-|||++|+.-++.+++|+.+++.+|+ .-.+.+.++.++..|+.|+|+++|++.|++.....+.|||.|+.
T Consensus 290 Li~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRs 369 (411)
T PRK05342 290 LVKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRS 369 (411)
T ss_pred HHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 88738837761466405462447999999996587415999999999754967998689999999999984757457799
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999873349999
Q gi|254780877|r 815 VIQRYIQNPLAE 826 (853)
Q Consensus 815 ~i~~~i~~~la~ 826 (853)
++++.+.+.+=+
T Consensus 370 IlE~iLld~MFe 381 (411)
T PRK05342 370 ILEEVLLDVMFE 381 (411)
T ss_pred HHHHHHHHHHCC
T ss_conf 999997887544
No 14
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.90 E-value=1.5e-22 Score=202.34 Aligned_cols=264 Identities=26% Similarity=0.479 Sum_probs=191.9
Q ss_pred HHHHHHHHHHCCHHHHHHH----HHHHHHHHHC---CCC-CCC-C------------CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 2355477674594899999----9999987410---123-656-6------------51289872678616889999999
Q gi|254780877|r 561 RIETEISKSVIGQSAAVES----VSNALRRFRA---GLQ-DPQ-R------------PMGSFMFLGPTGVGKTELVKSLA 619 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~----v~~~~~~~~~---gl~-~~~-~------------p~~~flf~GptGvGKTelak~la 619 (853)
.+.+.|...|||||+|-+. |.+|++|.+. +-. |+. . --...|++||||+|||-||++||
T Consensus 94 eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSGKTLLAqTLA 173 (452)
T TIGR00382 94 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSGKTLLAQTLA 173 (452)
T ss_pred HHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 99997213612310105254324112466653243045558840002354444433300662454688852689999999
Q ss_pred HHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH-------CCCCCEEEEHHHHHCCH--------
Q ss_conf 872377653002244774034532013047711203566774211322-------15641022021441498--------
Q gi|254780877|r 620 RLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR-------RHPYQVVLFDEIEKAHS-------- 684 (853)
Q Consensus 620 ~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr-------~~P~sVil~DEiEKah~-------- 684 (853)
+.| +-+ |-|++ ++.|.- +||||=|=-..|+.-+. +--..+|..|||+|-..
T Consensus 174 ~~L---~VP---fAiAD------ATtLTE--AGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SIT 239 (452)
T TIGR00382 174 RIL---NVP---FAIAD------ATTLTE--AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSIT 239 (452)
T ss_pred HHC---CCC---EEECC------HHHHHC--CCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEE
T ss_conf 873---887---42111------110200--6642422889999998741455245278508984223101215778011
Q ss_pred ------HHHHHHHHHHHCCEEEC---CCCCEEECCCCEEEECCCH-----H----HHHHHCC--------HH-------H
Q ss_conf ------99999999840457887---9997783033155954851-----2----6876403--------26-------7
Q gi|254780877|r 685 ------DVHNILLQVLDDGRLTD---SQGRTVDFRNTLIIMTSNL-----G----AEYLIED--------GD-------S 731 (853)
Q Consensus 685 ------~v~~~llqild~G~ltd---~~G~~v~f~n~iii~TsN~-----G----~~~~~~~--------~~-------~ 731 (853)
-|++.||-++ ||++.. ..||+.--.++|=|=|||+ | =+.+.+. ++ .
T Consensus 240 RDVSGEGVQQALLKi~-EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~ 318 (452)
T TIGR00382 240 RDVSGEGVQQALLKII-EGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKS 318 (452)
T ss_pred EEECCCHHHHHHHHHH-HCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 2217554999999876-032343175448868865768864764001105434448999988745553335455210045
Q ss_pred HH---HHHH------HHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHH
Q ss_conf 99---9999------999862885772666815862889989999999----9999999999985798999988999999
Q gi|254780877|r 732 VH---DKVM------GIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIV----RIQLGRVLSLIKERNISMDFDDQVIDWL 798 (853)
Q Consensus 732 ~~---~~~~------~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~----~~~l~~l~~~l~~~~i~l~~~~~~~~~l 798 (853)
.. ..++ +.++--+=|||++|+.-+-..++|+.+++.+|+ +-.+++.+++|.--++.|.|.++|+..|
T Consensus 319 ~~~~~~~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl~~I 398 (452)
T TIGR00382 319 KEKSEEELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEALKAI 398 (452)
T ss_pred HHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 78789999975171112210555101105340202787887899998525444488999997164561134558889999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 97089822062157999998733499999970868897889999
Q gi|254780877|r 799 SCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVF 842 (853)
Q Consensus 799 ~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~ 842 (853)
+++...++.|||.||.+|+..+.+-+=+.= .+.+...+.|+
T Consensus 399 A~~A~~RkTGARGLRsI~E~~lLDvMfeLP---s~~~~~kv~it 439 (452)
T TIGR00382 399 AKKALERKTGARGLRSIVEGLLLDVMFELP---SLEDLEKVVIT 439 (452)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCC---CHHCCCEEEEE
T ss_conf 999985076751578999999875314788---61157567870
No 15
>KOG2004 consensus
Probab=99.89 E-value=4.8e-19 Score=173.77 Aligned_cols=249 Identities=25% Similarity=0.442 Sum_probs=192.3
Q ss_pred HH-HCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 66-17866775100000001235547767459489999999999874101236566512898726786168899999998
Q gi|254780877|r 542 RW-TGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLAR 620 (853)
Q Consensus 542 ~~-TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~ 620 (853)
.| |-+||++-+.++. .|....+.|.+--+|-+..-+.|...|-..+.- .+...|| ++|.||+|||||.+||.+|+
T Consensus 385 dwlt~LPWgk~S~En~-dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr-gs~qGkI--lCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004 385 DWLTSLPWGKSSTENL-DLARAKEILDEDHYGMEDVKERILEFIAVGKLR-GSVQGKI--LCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred HHHHHCCCCCCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCE--EEEECCCCCCCCCHHHHHHH
T ss_conf 9998488787873530-379898763465301688999999999987514-6678837--99868998773218999999
Q ss_pred HHCCCCCCCCCCCHHHHCCCCC----CCHHHCCCCHHCCCCCCCCCCHHHHC----CCCCEEEEHHHHHC----CHHHHH
Q ss_conf 7237765300224477403453----20130477112035667742113221----56410220214414----989999
Q gi|254780877|r 621 LLFDDENSMIRIDMSEYMEKHS----VSRLIGSPPGYVGYEEGGALTEAVRR----HPYQVVLFDEIEKA----HSDVHN 688 (853)
Q Consensus 621 ~lf~~~~~lir~dMsey~e~~~----vs~LiGappGYvG~~~gg~Lte~vr~----~P~sVil~DEiEKa----h~~v~~ 688 (853)
.| .+.+.||-..-.++... --.-+||.|| .+..++++ || ++|+|||+|- |-|=-.
T Consensus 461 AL---nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPG--------kiIq~LK~v~t~NP--liLiDEvDKlG~g~qGDPas 527 (906)
T KOG2004 461 AL---NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPG--------KIIQCLKKVKTENP--LILIDEVDKLGSGHQGDPAS 527 (906)
T ss_pred HH---CCCEEEEECCCCCCHHHHCCCCEEEECCCCH--------HHHHHHHHHCCCCC--EEEEEHHHHHCCCCCCCHHH
T ss_conf 84---8746998536634277642542110014884--------89999986177886--58853223417887798689
Q ss_pred HHHHHHH---CCEEECCC-CCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHH
Q ss_conf 9999840---45788799-9778303315595485126876403267999999999862885772666815862889989
Q gi|254780877|r 689 ILLQVLD---DGRLTDSQ-GRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKE 764 (853)
Q Consensus 689 ~llqild---~G~ltd~~-G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~ 764 (853)
.||.+|| +..+.|.+ .-.+|++..+||||.|.= ...+|.+++|+ ++|-..-+..+
T Consensus 528 ALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i--------------------dtIP~pLlDRM-EvIelsGYv~e 586 (906)
T KOG2004 528 ALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI--------------------DTIPPPLLDRM-EVIELSGYVAE 586 (906)
T ss_pred HHHHHCCHHHCCCHHHHCCCCCCCHHHEEEEEECCCC--------------------CCCCHHHHHHH-HEEECCCCCHH
T ss_conf 9987439653553454202664211106889853644--------------------56985664122-32203672279
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCE---EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999857989---999889999999708982206215799999873349999997086
Q gi|254780877|r 765 DMAKIVRIQLGRVLSLIKERNIS---MDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQT 832 (853)
Q Consensus 765 ~~~~i~~~~l~~l~~~l~~~~i~---l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~ 832 (853)
+..+|+..+| +.+.++..|++ +.+++.++.-|+++ |..+.|.|+|+|-|++ |....|-.+..+.
T Consensus 587 EKv~IA~~yL--ip~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iek-I~Rk~Al~vv~~~ 653 (906)
T KOG2004 587 EKVKIAERYL--IPQALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEK-ICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHH--HHHHHHHCCCCHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 8999999841--2578987499878658629999999999-9888767789999999-9999999999864
No 16
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=99.86 E-value=7.7e-20 Score=180.23 Aligned_cols=151 Identities=23% Similarity=0.410 Sum_probs=114.1
Q ss_pred CCEEEEHHHHHCC------------HHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 4102202144149------------8999999998404578879997783033155954851268764032679999999
Q gi|254780877|r 671 YQVVLFDEIEKAH------------SDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMG 738 (853)
Q Consensus 671 ~sVil~DEiEKah------------~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~ 738 (853)
+++|++|||+|-. -.|+.-||-+++--....-+| .|+-.|-+||+. ||=...+..+
T Consensus 249 ~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G-~V~TdhILFIas---GAFh~sKPSD-------- 316 (442)
T PRK05201 249 NGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYG-MVKTDHILFIAS---GAFHVAKPSD-------- 316 (442)
T ss_pred CCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEECC---CCCCCCCCCH--------
T ss_conf 1704511465653035788989773307888788753885556777-602550345504---5001478202--------
Q ss_pred HHHHHCCHHHHCCCCCEEECCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC-----CCCCC
Q ss_conf 99862885772666815862889989999999----9999999999985798999988999999970898-----22062
Q gi|254780877|r 739 IVRSAFKPEFLNRLDEIILFEKLRKEDMAKIV----RIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYD-----PSYGA 809 (853)
Q Consensus 739 ~l~~~f~peflnRid~iv~F~~l~~~~~~~i~----~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~Ga 809 (853)
+-|||.+|+.-++.+++|+.+++.+|+ ...+.+.+..++-.|+.|+|+++++..|++..+. ...||
T Consensus 317 -----LIPEl~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGA 391 (442)
T PRK05201 317 -----LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGA 391 (442)
T ss_pred -----HHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf -----249871755058882449999999996786157899999998624967998479999999999985144766773
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 157999998733499999970868897889999
Q gi|254780877|r 810 RPLKRVIQRYIQNPLAERVLSQTISDGDSIEVF 842 (853)
Q Consensus 810 R~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~ 842 (853)
|.|+-++++.+++..=+. .-..+.++.|+
T Consensus 392 R~L~tI~E~vl~d~~Fe~----p~~~~~~v~I~ 420 (442)
T PRK05201 392 RRLHTVMEKLLEDISFEA----PDRSGEKITID 420 (442)
T ss_pred HHHHHHHHHHHHHHCCCC----CCCCCCEEEEC
T ss_conf 788999999989861468----89999779988
No 17
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-19 Score=177.77 Aligned_cols=264 Identities=25% Similarity=0.465 Sum_probs=181.2
Q ss_pred HHHHHHHHHHCCHHHHHHH----HHHHHHHHHCCCCCCC--CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 2355477674594899999----9999987410123656--651289872678616889999999872377653002244
Q gi|254780877|r 561 RIETEISKSVIGQSAAVES----VSNALRRFRAGLQDPQ--RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDM 634 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~----v~~~~~~~~~gl~~~~--~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dM 634 (853)
.+...|.+.||||+.|-+. |.+|++|.+..-.+.+ =--...|++||||+|||.||++||+.| +-. |-|
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVP---Fai 127 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVP---FAI 127 (408)
T ss_pred HHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHH---CCC---EEE
T ss_conf 99998652432625431034664106889986048877635320317998889975779999999984---898---475
Q ss_pred HHHCCCCCCCHHHCCCCHHCCCCCCCCCCHH-------HHCCCCCEEEEHHHHHC--------------CHHHHHHHHHH
Q ss_conf 7740345320130477112035667742113-------22156410220214414--------------98999999998
Q gi|254780877|r 635 SEYMEKHSVSRLIGSPPGYVGYEEGGALTEA-------VRRHPYQVVLFDEIEKA--------------HSDVHNILLQV 693 (853)
Q Consensus 635 sey~e~~~vs~LiGappGYvG~~~gg~Lte~-------vr~~P~sVil~DEiEKa--------------h~~v~~~llqi 693 (853)
.+ ++.|.- .||||-|--..|..- |.+--..+|..|||+|- .-.|++.||.+
T Consensus 128 AD------ATtLTE--AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKi 199 (408)
T COG1219 128 AD------ATTLTE--AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKI 199 (408)
T ss_pred CC------CCCHHH--CCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 14------441210--6635500899999999876458888828859985102542057898723436735899999999
Q ss_pred HHCCEEEC---CCCCEEECCCCEEEECCCH---------HHHHHHCC---------H-H-----------HHHHHHH--H
Q ss_conf 40457887---9997783033155954851---------26876403---------2-6-----------7999999--9
Q gi|254780877|r 694 LDDGRLTD---SQGRTVDFRNTLIIMTSNL---------GAEYLIED---------G-D-----------SVHDKVM--G 738 (853)
Q Consensus 694 ld~G~ltd---~~G~~v~f~n~iii~TsN~---------G~~~~~~~---------~-~-----------~~~~~~~--~ 738 (853)
+ ||+... ..||+..-...|-|=|||+ |-+.+... + + ..-..+. +
T Consensus 200 i-EGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeD 278 (408)
T COG1219 200 I-EGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPED 278 (408)
T ss_pred H-CCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 7-075102399988879842048873763467824401039999998626874245664453444412889987548687
Q ss_pred HHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 998628857726668158628899899999999----9999999999857989999889999999708982206215799
Q gi|254780877|r 739 IVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVR----IQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKR 814 (853)
Q Consensus 739 ~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r 814 (853)
.++--.-|||++|+.-+....+|+.+++.+|+. ..+++.++.++..++.|.|+++|+..++++....+.|||.||.
T Consensus 279 LvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRs 358 (408)
T COG1219 279 LVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRS 358 (408)
T ss_pred HHHCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 88708838872666326461015999999997265178999999996446916997489999999999984335357999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 9998733499999970868897889999
Q gi|254780877|r 815 VIQRYIQNPLAERVLSQTISDGDSIEVF 842 (853)
Q Consensus 815 ~i~~~i~~~la~~il~~~~~~g~~i~i~ 842 (853)
+++..+.+.+-+.= ...+-..+.|+
T Consensus 359 I~E~~lld~MfelP---s~~~v~~v~I~ 383 (408)
T COG1219 359 IIEELLLDVMFELP---SLEDVEKVVIT 383 (408)
T ss_pred HHHHHHHHHHHHCC---CCCCCEEEEEE
T ss_conf 99999999885278---86785089976
No 18
>KOG0730 consensus
Probab=99.84 E-value=4.7e-18 Score=165.73 Aligned_cols=405 Identities=28% Similarity=0.414 Sum_probs=247.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77786689528874077799999998734899844457437887313542174542024545899999986079976999
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILF 276 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilf 276 (853)
+--.++++.|+||+|||-+++.+|+.- ++.++.++...++. +|-||-|..+..++.+..+..-+.|+|
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli~--k~~gEte~~LR~~f~~a~k~~~psii~ 283 (693)
T KOG0730 216 KPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELIS--KFPGETESNLRKAFAEALKFQVPSIIF 283 (693)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH----------CCEEEECCCHHHHH--HCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999874443899998189999999973----------72257406289998--524631778999999986659980775
Q ss_pred ECCHHHHCCCCCCCCCCC-----HH---HHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHH-CCCE-EECCCCCHHHH
Q ss_conf 636277302666554335-----88---88765312466048997448999997300111320-2311-11157776789
Q gi|254780877|r 277 IDELHVLVGAGKTDGAMD-----AS---NLLKPSLARGELHCIGATTLDEYRKYIEKDPALAR-RFQS-LLVGEPTVTDT 346 (853)
Q Consensus 277 ide~h~~~gaG~~~g~~D-----aa---n~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~R-RFq~-i~V~Eps~~~t 346 (853)
|||++.|.+ +.++.-+ .+ -+++-..+++..=||++|--- --=|+||-| ||.. |.|.=|+....
T Consensus 284 IdEld~l~p--~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp-----~sld~alRRgRfd~ev~IgiP~~~~R 356 (693)
T KOG0730 284 IDELDALCP--KREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRP-----DSLDPALRRGRFDREVEIGIPGSDGR 356 (693)
T ss_pred HHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC-----CCCCHHHHCCCCCCEEEECCCCCHHH
T ss_conf 876762377--64333248889999999998527676746999715885-----55685652478853157448983358
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999978986541496101589999986333202457674778999999999875410222145788799999744569
Q gi|254780877|r 347 ISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEK 426 (853)
Q Consensus 347 ~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~e~ 426 (853)
..||+-+..+++.. ++..+...+..++-|... ||- --|..+.++ .+
T Consensus 357 ldIl~~l~k~~~~~-----~~~~l~~iA~~thGyvGa--------DL~-~l~~ea~~~---------~~----------- 402 (693)
T KOG0730 357 LDILRVLTKKMNLL-----SDVDLEDIAVSTHGYVGA--------DLA-ALCREASLQ---------AT----------- 402 (693)
T ss_pred HHHHHHHHHHCCCC-----CHHHHHHHHHHCCCHHHH--------HHH-HHHHHHHHH---------HH-----------
T ss_conf 89999998616887-----255689999873461478--------799-999998777---------66-----------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCH
Q ss_conf 99850222356656899987689999999999998886566765599999998874888888642111567654320110
Q gi|254780877|r 427 EALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLI 506 (853)
Q Consensus 427 ~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (853)
+.
T Consensus 403 -------------------------------------------------r~----------------------------- 404 (693)
T KOG0730 403 -------------------------------------------------RR----------------------------- 404 (693)
T ss_pred -------------------------------------------------HH-----------------------------
T ss_conf -------------------------------------------------55-----------------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 68999999999751126772000168667899987661786677510000000123554776745948999999999987
Q gi|254780877|r 507 PKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRR 586 (853)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~ 586 (853)
.+...+.+ ...+.++.+.+++-.+..+-|+ +.--+..++..|++.|. -.++. .-.-
T Consensus 405 -----~~~~~~~A--------~~~i~psa~Re~~ve~p~v~W~-----dIGGlE~lK~elq~~V~---~p~~~---pe~F 460 (693)
T KOG0730 405 -----TLEIFQEA--------LMGIRPSALREILVEMPNVSWD-----DIGGLEELKRELQQAVE---WPLKH---PEKF 460 (693)
T ss_pred -----HHHHHHHH--------HHCCCCHHHHHEECCCCCCCHH-----HCCCHHHHHHHHHHHHH---HHHHC---HHHH
T ss_conf -----57778998--------7068702233200247887822-----04578999999999986---16656---5999
Q ss_pred HHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCC--CCCCH
Q ss_conf 4101236566512898726786168899999998723776530022447740345320130477112035667--74211
Q gi|254780877|r 587 FRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG--GALTE 664 (853)
Q Consensus 587 ~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~g--g~Lte 664 (853)
.|.|++.| -| .||.||+|.|||.+||++|..- .-+|+.+-..|... =|||-.|- +.+-.
T Consensus 461 ~r~Gi~pp---kG-VLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~s------------k~vGeSEr~ir~iF~ 521 (693)
T KOG0730 461 ARFGISPP---KG-VLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFS------------KYVGESERAIREVFR 521 (693)
T ss_pred HHHCCCCC---CE-EEEECCCCCCHHHHHHHHHHHH---CCCEEECCCHHHHH------------HHCCCHHHHHHHHHH
T ss_conf 87257887---54-7777899862478999986463---58726415789987------------751825899999999
Q ss_pred HHHCCCCCEEEEHHHHHC-----------CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHH
Q ss_conf 322156410220214414-----------989999999984045788799977830331559548512687640326799
Q gi|254780877|r 665 AVRRHPYQVVLFDEIEKA-----------HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVH 733 (853)
Q Consensus 665 ~vr~~P~sVil~DEiEKa-----------h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~ 733 (853)
+-|+.+-|||.||||+-- .-.|++-||.-|| |... -+|.+||.-+|- ++.+
T Consensus 522 kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD-G~e~--------~k~V~ViAATNR--------pd~I- 583 (693)
T KOG0730 522 KARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD-GLEA--------LKNVLVIAATNR--------PDMI- 583 (693)
T ss_pred HHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-CCCC--------CCCEEEEECCCC--------HHHC-
T ss_conf 986269837744666666630478755148999999998700-4101--------470899950588--------1012-
Q ss_pred HHHHHHHHHHCCHHHH--CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHH-HHHHHHHC--CCCCCCC
Q ss_conf 9999999862885772--66681586288998999999999999999999857989999889-99999970--8982206
Q gi|254780877|r 734 DKVMGIVRSAFKPEFL--NRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQ-VIDWLSCR--GYDPSYG 808 (853)
Q Consensus 734 ~~~~~~l~~~f~pefl--nRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~-~~~~l~~~--~~~~~~G 808 (853)
-|+++ +|+|.+|.+.+-+.+.-..|+....+ +..+ ++. -++.|++. ||+ |
T Consensus 584 -----------D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k---------kmp~--~~~vdl~~La~~T~g~S---G 638 (693)
T KOG0730 584 -----------DPALLRPGRLDRIIYVPLPDLEARLEILKQCAK---------KMPF--SEDVDLEELAQATEGYS---G 638 (693)
T ss_pred -----------CHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHH---------CCCC--CCCCCHHHHHHHHCCCC---H
T ss_conf -----------697759865330575158347889999999973---------3999--86556999999854677---3
Q ss_pred CHHHHHHHHHH
Q ss_conf 21579999987
Q gi|254780877|r 809 ARPLKRVIQRY 819 (853)
Q Consensus 809 aR~l~r~i~~~ 819 (853)
+.|....+.-
T Consensus 639 -Ael~~lCq~A 648 (693)
T KOG0730 639 -AEIVAVCQEA 648 (693)
T ss_pred -HHHHHHHHHH
T ss_conf -8999999999
No 19
>KOG0733 consensus
Probab=99.81 E-value=7.6e-17 Score=155.86 Aligned_cols=506 Identities=22% Similarity=0.319 Sum_probs=250.6
Q ss_pred CCCCHHHHHHHHHHHHCC------------CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHH
Q ss_conf 333357899999996336------------77786689528874077799999998734899844457437887313542
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSR------------RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALI 246 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r------------~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 246 (853)
-+=|-|+++.++.+++.- +--..++|-|+||.|||.++..+|.. -. .-++++....+|
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge---l~-------vPf~~isApeiv 260 (802)
T KOG0733 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE---LG-------VPFLSISAPEIV 260 (802)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH---CC-------CCEEEECCHHHH
T ss_conf 41673899999999998852811686628779975164489986478999997521---28-------854851414653
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC--CC---HHHHHHHH--HC-----CCCEEEEEEE
Q ss_conf 1745420245458999999860799769996362773026665543--35---88887653--12-----4660489974
Q gi|254780877|r 247 AGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA--MD---ASNLLKPS--LA-----RGELHCIGAT 314 (853)
Q Consensus 247 ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~--~D---aan~LKP~--La-----rG~l~~IgaT 314 (853)
+|.+ ||=|+++..+.+++... .+.|+|||||..|-+.-.. ++ |. +|.+|--. |. .-..-+||||
T Consensus 261 SGvS--GESEkkiRelF~~A~~~-aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgAT 336 (802)
T KOG0733 261 SGVS--GESEKKIRELFDQAKSN-APCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGAT 336 (802)
T ss_pred CCCC--CCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
T ss_conf 1557--52289999999987366-9759985110013644045-788999999999998510025666689976998247
Q ss_pred CHHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 48999997300111320--2311-11157776789999999789865414961015899999863332024576747789
Q gi|254780877|r 315 TLDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAI 391 (853)
Q Consensus 315 T~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAI 391 (853)
+--. -=|+||-| ||.. |-+.=||...--+||+-+...+- +-+ .|+ ....++|+.-|...
T Consensus 337 nRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr-l~g-~~d---~~qlA~lTPGfVGA-------- 398 (802)
T KOG0733 337 NRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLR-LSG-DFD---FKQLAKLTPGFVGA-------- 398 (802)
T ss_pred CCCC-----CCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCC-CCC-CCC---HHHHHHCCCCCCCH--------
T ss_conf 8976-----55877732565532353068966889999999986277-787-768---99997518875214--------
Q ss_pred HHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999--99998754102221457887999997445699985022235665689998768999999999999888656676
Q gi|254780877|r 392 DLMD--EASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKI 469 (853)
Q Consensus 392 DllD--eA~A~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 469 (853)
||.- .++|++.+.. .+.+..-.....-.-.|..+ +.....+.-+. . ...-+..
T Consensus 399 DL~AL~~~Aa~vAikR------------~ld~~~~p~~~~~~~ed~~~-~~~~~d~S~i~----------~--~~~~~~~ 453 (802)
T KOG0733 399 DLMALCREAAFVAIKR------------ILDQSSSPLTKVPISEDSSN-KDAEEDQSSIK----------I--TSNAERP 453 (802)
T ss_pred HHHHHHHHHHHHHHHH------------HHHCCCCCCCCCCCCCCCCC-CCCCCHHHHHH----------C--CCCCCCC
T ss_conf 1999999999999999------------86213576656875456667-77530135540----------5--7764465
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHH
Q ss_conf 55999999988748888886421115676543201106899999999975112677200016866789998766178667
Q gi|254780877|r 470 LYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVD 549 (853)
Q Consensus 470 ~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~ 549 (853)
... ...++.+..+.......+.....-.. +..++.+... |-++.-.+.++.--++-|.
T Consensus 454 ~~l----------d~v~~~~i~~~~d~~S~E~~~~L~i~----~eDF~~Al~~--------iQPSakREGF~tVPdVtW~ 511 (802)
T KOG0733 454 LEL----------DRVVQDAILNNPDPLSKELLEGLSIK----FEDFEEALSK--------IQPSAKREGFATVPDVTWD 511 (802)
T ss_pred CCH----------HHHHHHHHHHCCCCCCHHHHCCCEEC----HHHHHHHHHH--------CCCCHHCCCCEECCCCCHH
T ss_conf 447----------89999999718998686773566101----9999999985--------5930203651326998766
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 75100000001235547767459489999999999874101236566512898726786168899999998723776530
Q gi|254780877|r 550 KMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSM 629 (853)
Q Consensus 550 kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~l 629 (853)
+.-.|..+...|.-.|+ .-|-..=.-.+.|+.. |-| +|++||+|-|||-|||++|..- .-+|
T Consensus 512 -----dIGaL~~vR~eL~~aI~------~PiK~pd~~k~lGi~~---PsG-vLL~GPPGCGKTLlAKAVANEa---g~NF 573 (802)
T KOG0733 512 -----DIGALEEVRLELNMAIL------APIKRPDLFKALGIDA---PSG-VLLCGPPGCGKTLLAKAVANEA---GANF 573 (802)
T ss_pred -----HCCCHHHHHHHHHHHHH------HHCCCHHHHHHHCCCC---CCC-EEEECCCCCCHHHHHHHHHHHC---CCCE
T ss_conf -----41249999999999986------0023888999828889---872-3875799861889999985030---4754
Q ss_pred CCCCHHHHCCCCCCCHHHCCCCHHCCCCCCC--CCCHHHHCCCCCEEEEHHHHHC-----------CHHHHHHHHHHHHC
Q ss_conf 0224477403453201304771120356677--4211322156410220214414-----------98999999998404
Q gi|254780877|r 630 IRIDMSEYMEKHSVSRLIGSPPGYVGYEEGG--ALTEAVRRHPYQVVLFDEIEKA-----------HSDVHNILLQVLDD 696 (853)
Q Consensus 630 ir~dMsey~e~~~vs~LiGappGYvG~~~gg--~Lte~vr~~P~sVil~DEiEKa-----------h~~v~~~llqild~ 696 (853)
|.+--.|... -|||-.|-- ++-..-|..--|||+||||+-- ...|.|-||.=||-
T Consensus 574 isVKGPELlN------------kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG 641 (802)
T KOG0733 574 ISVKGPELLN------------KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG 641 (802)
T ss_pred EEECCHHHHH------------HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7623889998------------7742378999999998623898389851112027655777750589999999987316
Q ss_pred CEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 57887999778303315595485126876403267999999999862885772666815862889989999999999999
Q gi|254780877|r 697 GRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGR 776 (853)
Q Consensus 697 G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~ 776 (853)
+. +-++..||--+| .++-+..++ ++| +|+|.+.+-.+-..++...|++...+.
T Consensus 642 l~---------~R~gV~viaATN--------RPDiIDpAi-------LRP---GRlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733 642 LE---------ERRGVYVIAATN--------RPDIIDPAI-------LRP---GRLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred CC---------CCCCEEEEEECC--------CCCCCCHHH-------CCC---CCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 21---------114259995068--------976555655-------187---755742450699878899999998535
Q ss_pred HHHHHHHCCCEEEECHH-HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999857989999889-999999708982206215799999873349999997
Q gi|254780877|r 777 VLSLIKERNISMDFDDQ-VIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVL 829 (853)
Q Consensus 777 l~~~l~~~~i~l~~~~~-~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il 829 (853)
++..+ ++. .++.|+..--...|-.-.|.-.++.--...|-+.+.
T Consensus 695 -------~k~pl--~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733 695 -------TKPPL--SSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred -------CCCCC--CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------79988--7545899985123226875365999999999999999986
No 20
>KOG0745 consensus
Probab=99.79 E-value=1.7e-17 Score=161.14 Aligned_cols=209 Identities=24% Similarity=0.474 Sum_probs=146.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCC----CCCHH---HHCCCCC
Q ss_conf 8987267861688999999987237765300224477403453201304771120356677----42113---2215641
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGG----ALTEA---VRRHPYQ 672 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg----~Lte~---vr~~P~s 672 (853)
..|++||||+|||.||++||+.| .-.+.--|+... .- .||||-|--. +|++| |.+---.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtL---------TQ--AGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745 228 NVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTL---------TQ--AGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCH---------HH--CCCCCCCHHHHHHHHHHHCCCCHHHHHCC
T ss_conf 47997788876438999999970---887687325522---------00--55345429999999999725789988267
Q ss_pred EEEEHHHHHCC--------------HHHHHHHHHHHHCCEEECC---------CC--CEEECCCCEEEECC---CHHHHH
Q ss_conf 02202144149--------------8999999998404578879---------99--77830331559548---512687
Q gi|254780877|r 673 VVLFDEIEKAH--------------SDVHNILLQVLDDGRLTDS---------QG--RTVDFRNTLIIMTS---NLGAEY 724 (853)
Q Consensus 673 Vil~DEiEKah--------------~~v~~~llqild~G~ltd~---------~G--~~v~f~n~iii~Ts---N~G~~~ 724 (853)
+|++||++|-. ..|++.||.++ ||++..- .| -.||-+|-+||+.- |+- +.
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKll-EGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ld-k~ 371 (564)
T KOG0745 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLL-EGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLD-KI 371 (564)
T ss_pred EEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHH-HH
T ss_conf 388760124413676545444566266999999985-2627702677877789998589713666888034323569-89
Q ss_pred HHC------------------------CHH----HHHHHHHHH------HHHHCCHHHHCCCCCEEECCCCCHHHHHHHH
Q ss_conf 640------------------------326----799999999------9862885772666815862889989999999
Q gi|254780877|r 725 LIE------------------------DGD----SVHDKVMGI------VRSAFKPEFLNRLDEIILFEKLRKEDMAKIV 770 (853)
Q Consensus 725 ~~~------------------------~~~----~~~~~~~~~------l~~~f~peflnRid~iv~F~~l~~~~~~~i~ 770 (853)
+.+ .+. ..+...++. +.--.-|||++|+.-+|+|++|+++++.+|+
T Consensus 372 I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VL 451 (564)
T KOG0745 372 ISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVL 451 (564)
T ss_pred HHHHHCCHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 88763000015678887420011034667304677889998634632135526728771665257652426888899987
Q ss_pred H----HHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9----99999999998579899998899999997089822062157999998733499
Q gi|254780877|r 771 R----IQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPL 824 (853)
Q Consensus 771 ~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~l 824 (853)
. -.+.+.++.+...++.|.+++.|++.|++.......|||.||.++++.+..++
T Consensus 452 tEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleam 509 (564)
T KOG0745 452 TEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAM 509 (564)
T ss_pred HCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 3554668999999855577469866999999999987614346789999999976401
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.78 E-value=6e-14 Score=132.35 Aligned_cols=463 Identities=23% Similarity=0.391 Sum_probs=243.4
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 96336777866895288740777999999987348998444574378873135421745420245458999999860799
Q gi|254780877|r 192 QVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDG 271 (853)
Q Consensus 192 ~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~ 271 (853)
+-|+=.--..++|+|+||.|||-+...+|..+ +...++++-..++ .+|-||-|+|++.|.+|.... .
T Consensus 233 ~~lGiePPkG~ll~GPPGtGktllaka~ane~----------~a~f~~inGPeim--sky~Ge~e~~lr~if~eaeen-a 299 (980)
T TIGR01243 233 EKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFIAINGPEIM--SKYYGESEERLREIFKEAEEN-A 299 (980)
T ss_pred HHCCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCEEEEECCCHHH--HHHCCCCHHHHHHHHHHHHHC-C
T ss_conf 86188998735875589861789999987530----------5517885060344--331363078999999865305-8
Q ss_pred CEEEEECCHHHHCCCCC-CCCCCC---HH---HHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCE-EECCCC
Q ss_conf 76999636277302666-554335---88---88765312466048997448999997300111320--2311-111577
Q gi|254780877|r 272 EIILFIDELHVLVGAGK-TDGAMD---AS---NLLKPSLARGELHCIGATTLDEYRKYIEKDPALAR--RFQS-LLVGEP 341 (853)
Q Consensus 272 ~~ilfide~h~~~gaG~-~~g~~D---aa---n~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~-i~V~Ep 341 (853)
+.|+|||||..|-.--. ..|.+. ++ .++...-.||.+-+||||.--+ .=||||-| ||.+ |.|..|
T Consensus 300 P~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~-----a~dPalrrPGrfdrei~~~~P 374 (980)
T TIGR01243 300 PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPD-----ALDPALRRPGRFDREIEIGVP 374 (980)
T ss_pred CCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCCHHHCCCCCCCCEEEECCC
T ss_conf 707874121100764100001688999999999974002487289981468850-----026224278864433574188
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 76789999999789865414961015899-99986333202457674778999999999875410222145788799999
Q gi|254780877|r 342 TVTDTISILRGLKERYEQHHKVRISDSAL-VSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRII 420 (853)
Q Consensus 342 s~~~t~~iL~gl~~~yE~~H~V~i~d~al-~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~ 420 (853)
+...-.+||+-... +.-+.++.= .+.++.-+..-.+..+-...+.-+-+..+..... .++
T Consensus 375 d~~~r~eil~~htr------~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------- 435 (980)
T TIGR01243 375 DKEGRKEILQIHTR------NMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEKIIEKVSKANSE-----DEI-------- 435 (980)
T ss_pred CHHHHHHHHHHHHC------CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--------
T ss_conf 54567888876414------78750110057899999876665566788999999988631026-----789--------
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCHHHHH
Q ss_conf 74456999850222356656899987689999999999998886566765599999998--8748888886421115676
Q gi|254780877|r 421 CLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRL--ESMRNELAIAQRQGHFERA 498 (853)
Q Consensus 421 ~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l--~~~~~~~~~~~~~~~~~~~ 498 (853)
+..+..+......-+ ..-+..+-+.++..+-.|.... ...+-++- ..++..+....-+ ..+
T Consensus 436 -----~~~~~~~~~~~~~~~----~~~~~~~l~~la~~thG~~Gad-----laal~~eaam~~lrr~~~eg~i~---~ea 498 (980)
T TIGR01243 436 -----KEILKEDGNVYVEVR----NRLIDKLLDKLAEVTHGFVGAD-----LAALAKEAAMAALRRLIREGKIN---LEA 498 (980)
T ss_pred -----HHHHHHCCHHHHHHH----HHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHHHHHHHHCCCCCC---HHH
T ss_conf -----999750121246789----9999999998865423620355-----99998999999999874027745---026
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 54320110689999999997511267720001686678999876617866775100000001235547767459489999
Q gi|254780877|r 499 GELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVE 578 (853)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~ 578 (853)
.+.....+....-......++.. .|.+..+.+|+-..-.+-|..+ --|....+.|+ +||+
T Consensus 499 ~~iP~~vl~~lkvt~~df~ealk--------~~~P~~~re~~~evP~v~W~di-----GGlee~kq~lr-------eave 558 (980)
T TIGR01243 499 EEIPKEVLEELKVTMKDFKEALK--------MVEPSALREVLVEVPNVKWEDI-----GGLEEVKQELR-------EAVE 558 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHEEEEECCCCCCCCC-----CCHHHHHHHHH-------HHHH
T ss_conf 77579999873222899999985--------1062341100023375110014-----66789999998-------7752
Q ss_pred HHHHHH-HHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCC
Q ss_conf 999999-8741012365665128987267861688999999987237765300224477403453201304771120356
Q gi|254780877|r 579 SVSNAL-RRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYE 657 (853)
Q Consensus 579 ~v~~~~-~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~ 657 (853)
--.++- .-.+.|+..| -|++|| ||+|+|||-|||++|.. ++-++|..-..|- .|+-+|- .
T Consensus 559 WPlk~~~~f~k~G~~PP---~Gvll~-GPPGtGktllakava~e---s~anfi~v~GPe~-----lskWvGe-------s 619 (980)
T TIGR01243 559 WPLKAPEVFEKLGIRPP---KGVLLF-GPPGTGKTLLAKAVATE---SGANFIAVRGPEI-----LSKWVGE-------S 619 (980)
T ss_pred CCCCHHHHHHHCCCCCC---CCEEEE-CCCCCCHHHHHHHHHHC---CCCCEEEECCCHH-----HHHHHCH-------H
T ss_conf 34440589986078899---734874-68986168888877401---4564677407312-----2344032-------4
Q ss_pred CC--CCCCHHHHCCCCCEEEEHHHHHCCHH-------------HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHH
Q ss_conf 67--74211322156410220214414989-------------9999999840457887999778303315595485126
Q gi|254780877|r 658 EG--GALTEAVRRHPYQVVLFDEIEKAHSD-------------VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGA 722 (853)
Q Consensus 658 ~g--g~Lte~vr~~P~sVil~DEiEKah~~-------------v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~ 722 (853)
|- -..-++-|+.--+||+||||+--.|. |.|-+|.=+| | ....++.++|..+|-
T Consensus 620 e~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~d-G--------~~~~~~vvvi~atnr-- 688 (980)
T TIGR01243 620 EKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELD-G--------LEELSDVVVIAATNR-- 688 (980)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-C--------CCCCCCEEEEEECCC--
T ss_conf 79999999986412873787302111054124421001026899999998640-4--------434366589861588--
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 8764032679999999998628857726668158628899899999999999
Q gi|254780877|r 723 EYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 723 ~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
++-.... .++| +|+|.+|..-+-+.+....|+..+-
T Consensus 689 ------Pdi~dPa-------llrP---Gr~dr~i~vP~Pd~~ar~~ifk~ht 724 (980)
T TIGR01243 689 ------PDILDPA-------LLRP---GRLDRLILVPAPDEEARLEIFKIHT 724 (980)
T ss_pred ------CCCCCCC-------CCCC---CCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf ------7423610-------0488---7412168605985567676765531
No 22
>KOG0736 consensus
Probab=99.70 E-value=5e-13 Score=124.82 Aligned_cols=160 Identities=24% Similarity=0.344 Sum_probs=115.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCC---------CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
Q ss_conf 298533333578999999963367778---------66895288740777999999987348998444574378873135
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSRRTKN---------NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA 244 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r~~k~---------n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 244 (853)
.+.+ +.-+++.-+..+.++|.-+..- -++|-|+||+|||.+|...|+. -+..++++|-.+
T Consensus 398 ~n~~-~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~----------lg~h~~evdc~e 466 (953)
T KOG0736 398 WNSL-SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASE----------LGLHLLEVDCYE 466 (953)
T ss_pred HCCC-CCCCCHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHH----------HCCCEEECCHHH
T ss_conf 5158-87660279999999848655853001335537998679998757999999998----------387257013898
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCH--HHHHHH-------HHCCCCEEEEEEEC
Q ss_conf 421745420245458999999860799769996362773026665543358--888765-------31246604899744
Q gi|254780877|r 245 LIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDA--SNLLKP-------SLARGELHCIGATT 315 (853)
Q Consensus 245 l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Da--an~LKP-------~LarG~l~~IgaTT 315 (853)
|+|-+ ++--|-+++.+..-.+.. .+.|||+-.+..+- +.++|+.|+ ...+.- --.++..-+||+|+
T Consensus 467 l~~~s--~~~~etkl~~~f~~a~~~-~pavifl~~~dvl~--id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~ 541 (953)
T KOG0736 467 LVAES--ASHTETKLQAIFSRARRC-SPAVLFLRNLDVLG--IDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTS 541 (953)
T ss_pred HHHCC--CCHHHHHHHHHHHHHHHC-CCEEEEEECCCEEE--ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
T ss_conf 86436--331378999999987526-86289872242455--33777442779999999972023567799659999625
Q ss_pred HHHHHHHHHCCHHHHHC--CCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 89999973001113202--31111157776789999999789
Q gi|254780877|r 316 LDEYRKYIEKDPALARR--FQSLLVGEPTVTDTISILRGLKE 355 (853)
Q Consensus 316 ~~Eyrk~iEkD~Al~RR--Fq~i~V~Eps~~~t~~iL~gl~~ 355 (853)
..| +=|+--|+ |..|.|..||.++-++|||....
T Consensus 542 s~~------~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~ 577 (953)
T KOG0736 542 SIE------DLPADIQSLFLHEIEVPALSEEQRLEILQWYLN 577 (953)
T ss_pred CCC------CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 302------398789875265213778887889999999983
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.68 E-value=4.9e-15 Score=141.15 Aligned_cols=195 Identities=27% Similarity=0.391 Sum_probs=145.9
Q ss_pred HHHHHHCCCCCCCCCHHHHHH---HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
Q ss_conf 569987298533333578999---99996336777866895288740777999999987348998444574378873135
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMR---RAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA 244 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~---~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 244 (853)
|-++-|=..||-+||-+.=+. -+-+.+...+-.+.||-|+||||||++++-+|... ++.+++|+..
T Consensus 3 LAer~RP~~lde~vGQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~----------~~~f~~lnA~- 71 (417)
T PRK13342 3 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAEFEALSAV- 71 (417)
T ss_pred CHHHHCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECC-
T ss_conf 71644999888857987760897199999976999759988969998999999999986----------8988996141-
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf 4217454202454589999998607--99769996362773026665543358888765312466048997448999997
Q gi|254780877|r 245 LIAGAKFRGEFEERLKSLLCEIRSE--DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKY 322 (853)
Q Consensus 245 l~ag~~~rg~~e~r~~~i~~~~~~~--~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~ 322 (853)
.+|. ..++.++++.+.. .+..||||||||.+= -+.-+.|-|++.+|.+..|||||..-|
T Consensus 72 -~~gv-------~dir~ii~~a~~~~~~~~tilfiDEIHRfn--------K~QQD~LLp~vE~g~iiLIgATTENP~--- 132 (417)
T PRK13342 72 -TSGV-------KDLREVIEEAKQSRLGRRTILFIDEIHRFN--------KAQQDALLPHVEDGTITLIGATTENPS--- 132 (417)
T ss_pred -CCCH-------HHHHHHHHHHHHHHCCCCEEEEEECHHHCC--------HHHHHHHHHHHHCCCEEEEEECCCCCH---
T ss_conf -0388-------999999999886314896599997820058--------899999987511265699974157922---
Q ss_pred HHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 3001113202311111577767899999997898-654149610158999998633320245767477899999999
Q gi|254780877|r 323 IEKDPALARRFQSLLVGEPTVTDTISILRGLKER-YEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 323 iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~-yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
|+-.+||-.|-+.+.++..+.++-..||+..... ....+++.++++|+...+..|.== =-+|+.+|+-|.
T Consensus 133 f~in~aLlSRc~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GD------aR~aLN~LE~a~ 203 (417)
T PRK13342 133 FEVNPALLSRAQVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGD------ARRALNLLELAA 203 (417)
T ss_pred HHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHH
T ss_conf 53489898565700205899999999999999877433788776999999999814985------999999999998
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.8e-13 Score=124.98 Aligned_cols=178 Identities=26% Similarity=0.361 Sum_probs=111.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCE
Q ss_conf 6512898726786168899999998723776530022447740345320130477112035667--74211322156410
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQV 673 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sV 673 (853)
+|...+||.||+|+|||.|||++|..+ ..+++.+++++|.. .|||-.+- -.+-...++..-||
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~s------------k~vGesek~ir~~F~~A~~~~p~i 338 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLS------------KWVGESEKNIRELFEKARKLAPSI 338 (494)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEECCHHHHH------------HHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 888369998899975899999987544---98248843355540------------776599999999999999669988
Q ss_pred EEEHHHHHC----C-------HHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 220214414----9-------89999999984045788799977830331559548512687640326799999999986
Q gi|254780877|r 674 VLFDEIEKA----H-------SDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRS 742 (853)
Q Consensus 674 il~DEiEKa----h-------~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~ 742 (853)
|+||||++- + ..+.+-||..+|.-. ..+++++|.++|- .+.
T Consensus 339 ifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e---------~~~~v~vi~aTN~--------p~~----------- 390 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNR--------PDD----------- 390 (494)
T ss_pred EEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC---------CCCCEEEEECCCC--------CCC-----------
T ss_conf 974886667412899876379999999999974754---------4376489964798--------332-----------
Q ss_pred HCCHHHH--CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2885772--66681586288998999999999999999999857989999889999999708982206215799999873
Q gi|254780877|r 743 AFKPEFL--NRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYI 820 (853)
Q Consensus 743 ~f~pefl--nRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i 820 (853)
..|+++ +|+|.++.|.+-+..+...|+...+.+.... ..++-..+.+++. ...|-...+...++...
T Consensus 391 -ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~--------~~~~~~~~~l~~~--t~~~sgadi~~i~~ea~ 459 (494)
T COG0464 391 -LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP--------LAEDVDLEELAEI--TEGYSGADIAALVREAA 459 (494)
T ss_pred -CCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf -687562436630378717989899999999985415651--------1556419999987--52778999999999999
Q ss_pred HHHHHHH
Q ss_conf 3499999
Q gi|254780877|r 821 QNPLAER 827 (853)
Q Consensus 821 ~~~la~~ 827 (853)
...+.+.
T Consensus 460 ~~~~~~~ 466 (494)
T COG0464 460 LEALREA 466 (494)
T ss_pred HHHHHHC
T ss_conf 9899854
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.63 E-value=7.3e-13 Score=123.52 Aligned_cols=139 Identities=27% Similarity=0.432 Sum_probs=103.8
Q ss_pred HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCC---CCCH
Q ss_conf 1012365665128987267861688999999987237765300224477403453201304771120356677---4211
Q gi|254780877|r 588 RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGG---ALTE 664 (853)
Q Consensus 588 ~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg---~Lte 664 (853)
..|+.. |-|+ |++||+|+|||.+||++|... .-+++++|||++.. +|||-.|.. .+..
T Consensus 253 ~~gl~~---PkGv-LL~GpPG~GKtl~AKAvA~e~---~~p~l~l~~~~l~~------------~~vGesE~~~r~~f~~ 313 (491)
T CHL00195 253 NYGLPT---PRGL-LLVGIQGTGKSLTAKAIANEW---NLPLLRLDVGKLFG------------GIVGESESRMRQMIQL 313 (491)
T ss_pred HCCCCC---CCEE-EEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHHHH------------HHCCHHHHHHHHHHHH
T ss_conf 459999---9879-997999987899999998663---89469966799756------------0067049999999999
Q ss_pred HHHCCCCCEEEEHHHHHC------------CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHH
Q ss_conf 322156410220214414------------98999999998404578879997783033155954851268764032679
Q gi|254780877|r 665 AVRRHPYQVVLFDEIEKA------------HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSV 732 (853)
Q Consensus 665 ~vr~~P~sVil~DEiEKa------------h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~ 732 (853)
+=...| |||.+|||||+ +..|++.||.-|++- -+..+||.|+|- .
T Consensus 314 A~~~aP-~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~-----------~~~VfViattN~--------~--- 370 (491)
T CHL00195 314 AETISP-CILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEK-----------KSPVFVVATANN--------I--- 370 (491)
T ss_pred HHHHCC-EEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC-----------CCCEEEEEECCC--------C---
T ss_conf 986198-58997465454258888888723289999999986468-----------997699995899--------7---
Q ss_pred HHHHHHHHHHHCCHHHHC--CCCCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999998628857726--668158628899899999999999999
Q gi|254780877|r 733 HDKVMGIVRSAFKPEFLN--RLDEIILFEKLRKEDMAKIVRIQLGRV 777 (853)
Q Consensus 733 ~~~~~~~l~~~f~pefln--Rid~iv~F~~l~~~~~~~i~~~~l~~l 777 (853)
..++|||+- |+|+++.+..-+.++...|++.++.+.
T Consensus 371 ---------~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~ 408 (491)
T CHL00195 371 ---------DSLPLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRF 408 (491)
T ss_pred ---------CCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf ---------55898770898777047648959899999999998544
No 26
>KOG2170 consensus
Probab=99.60 E-value=3e-14 Score=134.76 Aligned_cols=218 Identities=26% Similarity=0.379 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 01235547767459489999999999874101236566512898726786168899999998723776530022447740
Q gi|254780877|r 559 FLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 559 Ll~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
+-.|+..|...++||.-|.+.|.++++-..+.= .|.||+ ++=|-|+||+||...++.||+.+|-+.- ||.|-
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-~p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl------~S~~V 144 (344)
T KOG2170 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANP-NPRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGL------RSPFV 144 (344)
T ss_pred CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CCCCCE-EEEECCCCCCCHHHHHHHHHHHHHHCCC------CCHHH
T ss_conf 067899999986320879999999999986289-999875-8983089987564899999999875112------56268
Q ss_pred CCCCCCHHHCCCCHHCC-CCCCCCCCHH----HHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCE
Q ss_conf 34532013047711203-5667742113----221564102202144149899999999840457887999778303315
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVG-YEEGGALTEA----VRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTL 713 (853)
Q Consensus 639 e~~~vs~LiGappGYvG-~~~gg~Lte~----vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~i 713 (853)
. |.++++==.-|-|+- |.+ +|-++ ++.-+.|+..|||+||.||.+++.+=.-||-- ....-+||+++|
T Consensus 145 ~-~fvat~hFP~~~~ie~Yk~--eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyy----p~v~gv~frkaI 217 (344)
T KOG2170 145 H-HFVATLHFPHASKIEDYKE--ELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYY----PQVSGVDFRKAI 217 (344)
T ss_pred H-HHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCC----CCCCCCCCCCEE
T ss_conf 8-7655415997678999999--99999999998557754873105435876999876663046----321355455148
Q ss_pred EEECCCHHHHHHHCCHH------------HHHHHHHHH-HHHHCCH----------HHHCCCCCEEECCCCCHHHHHHHH
Q ss_conf 59548512687640326------------799999999-9862885----------772666815862889989999999
Q gi|254780877|r 714 IIMTSNLGAEYLIEDGD------------SVHDKVMGI-VRSAFKP----------EFLNRLDEIILFEKLRKEDMAKIV 770 (853)
Q Consensus 714 ii~TsN~G~~~~~~~~~------------~~~~~~~~~-l~~~f~p----------eflnRid~iv~F~~l~~~~~~~i~ 770 (853)
+|+-||.|+..|.+..- +++.. ... ....|.+ ==.|+||.+|||-||++..+..-+
T Consensus 218 FIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~-E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~ 296 (344)
T KOG2170 218 FIFLSNAGGSEIARIALENARNGKPREQLRLKSF-EPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCI 296 (344)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 9997178614779999999974797564526552-699987553544566401421546677650576762389999999
Q ss_pred HHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 9999999999985798999988999999970
Q gi|254780877|r 771 RIQLGRVLSLIKERNISMDFDDQVIDWLSCR 801 (853)
Q Consensus 771 ~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 801 (853)
+-++. .+| +..+.+.++.+++.
T Consensus 297 r~el~-------~rg--~~~d~~~~erva~~ 318 (344)
T KOG2170 297 RAELR-------KRG--LAPDQDFVERVANS 318 (344)
T ss_pred HHHHH-------HCC--CCCCHHHHHHHHHH
T ss_conf 99998-------654--65526899999986
No 27
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=99.59 E-value=7.9e-14 Score=131.35 Aligned_cols=259 Identities=26% Similarity=0.476 Sum_probs=175.0
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHH--HHCCC----CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 54776745948999999999987--41012----3656651289872678616889999999872377653002244774
Q gi|254780877|r 564 TEISKSVIGQSAAVESVSNALRR--FRAGL----QDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY 637 (853)
Q Consensus 564 ~~l~~~v~gq~~ai~~v~~~~~~--~~~gl----~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey 637 (853)
..|-+.||||++|-++|+-|++- -|.-| ++.=-|= ..|..|||||||||.|+.||+.. +-+||.+-=+-|
T Consensus 8 ~~LD~yIiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PK-NILMiGpTGVGKTEIARRlAKL~---~aPFiKVEAtKf 83 (463)
T TIGR00390 8 AELDKYIIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPK-NILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF 83 (463)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEEEE
T ss_conf 75144220636678899999886677612871113565874-30432788985447999999984---489146664100
Q ss_pred CCCCCCCHHHCCCCHHCCCCCCCC---CC------------HHHH-------------------------CCCCCEEEEH
Q ss_conf 034532013047711203566774---21------------1322-------------------------1564102202
Q gi|254780877|r 638 MEKHSVSRLIGSPPGYVGYEEGGA---LT------------EAVR-------------------------RHPYQVVLFD 677 (853)
Q Consensus 638 ~e~~~vs~LiGappGYvG~~~gg~---Lt------------e~vr-------------------------~~P~sVil~D 677 (853)
+| =||||-|=-.. |+ +.+| ++||.. +|.
T Consensus 84 TE-----------VGYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~-f~~ 151 (463)
T TIGR00390 84 TE-----------VGYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEM-FWG 151 (463)
T ss_pred EE-----------CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-EEC
T ss_conf 11-----------021424100367878999999999988998899999999889998728889887766672230-005
Q ss_pred HHH----HCCHHHHHHHHHHHHC--------CEEECCCCCEEECCCCE--EEECCCHHHHHH-------------H-C--
Q ss_conf 144----1498999999998404--------57887999778303315--595485126876-------------4-0--
Q gi|254780877|r 678 EIE----KAHSDVHNILLQVLDD--------GRLTDSQGRTVDFRNTL--IIMTSNLGAEYL-------------I-E-- 727 (853)
Q Consensus 678 EiE----Kah~~v~~~llqild~--------G~ltd~~G~~v~f~n~i--ii~TsN~G~~~~-------------~-~-- 727 (853)
+.| +++......+-+=+-. |.|-|.. -.|+.+... +-.-++.|+... . +
T Consensus 152 ~~ePN~~~e~~~~~~~~~~klr~r~ahqlalGeLDd~~-iei~v~~~~pf~~~e~~~pp~~e~~~~~l~~~l~~l~~~~k 230 (463)
T TIGR00390 152 SEEPNEKDEEESSREALRKKLRERMAHQLALGELDDKE-IEIEVSAKSPFSGIEILAPPGMEEMTMNLQSLLQNLGPDKK 230 (463)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 66874024689999999999999877663036646715-89986137871267505888556776789999862045320
Q ss_pred -----------------------CHHHHHHHHHHHH--------------------------------------------
Q ss_conf -----------------------3267999999999--------------------------------------------
Q gi|254780877|r 728 -----------------------DGDSVHDKVMGIV-------------------------------------------- 740 (853)
Q Consensus 728 -----------------------~~~~~~~~~~~~l-------------------------------------------- 740 (853)
+.++.++...+.+
T Consensus 231 kkr~l~ik~A~~~L~~Ee~~kL~d~e~~~~~A~~~vE~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEGS~V 310 (463)
T TIGR00390 231 KKRKLKIKEAKKALIAEEAAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEGSTV 310 (463)
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 00114569999998999887336966643899999984782898530354216888678887655651011420226664
Q ss_pred ----------------HHHC--------CHHHHCCCCCEEECCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECH
Q ss_conf ----------------8628--------85772666815862889989999999----9999999999985798999988
Q gi|254780877|r 741 ----------------RSAF--------KPEFLNRLDEIILFEKLRKEDMAKIV----RIQLGRVLSLIKERNISMDFDD 792 (853)
Q Consensus 741 ----------------~~~f--------~peflnRid~iv~F~~l~~~~~~~i~----~~~l~~l~~~l~~~~i~l~~~~ 792 (853)
.+.| =|||-+|+.=-|-.+.||.+++.+|+ .-.+.+.+..++-.|+.|.|++
T Consensus 311 ~TKyG~VkTdHiLFIAaGAF~lAKPSDLIPELQGRfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv~i~F~d 390 (463)
T TIGR00390 311 NTKYGSVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRVELEALTVDDFERILTEPKNSLIKQYQALLKVEGVNIEFSD 390 (463)
T ss_pred EEECCEEECCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECH
T ss_conf 31001042215787675232027776666311066737787676329999996208343689999998876276403355
Q ss_pred HHHHHHHHCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 999999970898-----220621579999987334999999708688978899999
Q gi|254780877|r 793 QVIDWLSCRGYD-----PSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFV 843 (853)
Q Consensus 793 ~~~~~l~~~~~~-----~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~ 843 (853)
+|++.|++-+|. ...|||.|.-++++.+.+ .--.-.=..|.+|.|+.
T Consensus 391 ~AI~~iAe~ay~~N~~teniGARRLHTv~E~lled----isFea~D~~~~~~~I~~ 442 (463)
T TIGR00390 391 EAIKKIAELAYNVNQKTENIGARRLHTVLERLLED----ISFEAPDVSGQKVTITA 442 (463)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH----HCCCCCCCCCCEEEECH
T ss_conf 68999999999816442334650466899999987----51266686343245078
No 28
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=1e-13 Score=130.47 Aligned_cols=181 Identities=25% Similarity=0.385 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHH
Q ss_conf 33357899999996336777866895288740777999999987348998444574378873135421745420245458
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERL 259 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~ 259 (853)
++|...=++++| ...+-.+.||-|+||+|||+++.-+|... +...+.| ++..+|.+ .+
T Consensus 36 llg~g~~Lrr~i---~~~~~~S~Il~GPPGtGKTTLA~iIA~~t----------~~~F~~l--sAv~sgvk-------dl 93 (726)
T PRK13341 36 ILGEGRLLRRAI---KADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSL--NAVLAGVK-------DL 93 (726)
T ss_pred HCCCCCHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEE--ECCCCCHH-------HH
T ss_conf 428982899999---76999827888979999999999998874----------8867998--56203779-------99
Q ss_pred HHHHHHHHH----CCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCE
Q ss_conf 999999860----7997699963627730266655433588887653124660489974489999973001113202311
Q gi|254780877|r 260 KSLLCEIRS----EDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQS 335 (853)
Q Consensus 260 ~~i~~~~~~----~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~ 335 (853)
+.++++.+. ...++||||||||-+=- .--+.|-|++.+|.|..|||||..-| |+=.+||-.|-+.
T Consensus 94 r~ii~~A~~~~~~~g~~tILFIDEIHRfNK--------~QQD~LLp~vE~G~i~LIGATTENP~---F~vn~ALlSR~~v 162 (726)
T PRK13341 94 RAEVDAAKERLERHGKRTILFIDEVHRFNK--------AQQDALLPWVENGTVTLIGATTENPY---FEVNKALVSRSRL 162 (726)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHCCH--------HHHHHHHHHHCCCEEEEEEECCCCCC---EEECHHHHHHCEE
T ss_conf 999999999987459965999862542588--------78998788860683899970478974---3642988832346
Q ss_pred EECCCCCHHHHHHHHHH-HHHHHHH--HCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 11157776789999999-7898654--1496101589999986333202457674778999999999
Q gi|254780877|r 336 LLVGEPTVTDTISILRG-LKERYEQ--HHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASA 399 (853)
Q Consensus 336 i~V~Eps~~~t~~iL~g-l~~~yE~--~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A 399 (853)
+..+..+.++...||+. +...+-. .+.|.++++|+...+.+|.== --+|+.+|+-|..
T Consensus 163 f~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GD------aR~aLN~LElav~ 223 (726)
T PRK13341 163 FRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGD------ARSLLNALELAVE 223 (726)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHH
T ss_conf 674389999999999999876743256678775989999999975973------9999999999997
No 29
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.59 E-value=1.2e-11 Score=113.74 Aligned_cols=224 Identities=20% Similarity=0.278 Sum_probs=163.3
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHC
Q ss_conf 74594899999999998741012365665128987267861688999999987237765300224477403453201304
Q gi|254780877|r 569 SVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIG 648 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiG 648 (853)
.++|+..++..+.+.+.+. ...+.|+ |+.|++|+||..+|+++-..=.-....++.+||+...+..--+.|+|
T Consensus 139 ~liG~S~~m~~v~~~i~~~----a~~~~pV---LI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG 211 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRL----SRSSISV---LINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred CCEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 6546899999999999998----5889978---99898982699999999974887799957876788997789999708
Q ss_pred CCCHH-CCCCC--CCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf 77112-03566--7742113221564102202144149899999999840457887999778303315595485126876
Q gi|254780877|r 649 SPPGY-VGYEE--GGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL 725 (853)
Q Consensus 649 appGY-vG~~~--gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~ 725 (853)
...|+ .|-.+ -|.+ .+--.+.++||||+.-.++++.-||++|++|.+.--.|.+---.|+=||+|||.-
T Consensus 212 ~~~gaf~ga~~~~~g~~----e~a~~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~---- 283 (469)
T PRK10923 212 HEKGAFTGANTIRQGRF----EQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN---- 283 (469)
T ss_pred CCCCCCCCCCCCCCCCH----HHCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCC----
T ss_conf 76678788642458736----6438992656636648999999999998559378579985122143799707879----
Q ss_pred HCCHHHHHHHHHH-HHHHHCCHHHHCCCCC-EEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 4032679999999-9986288577266681-586288998--99999999999999999985798999988999999970
Q gi|254780877|r 726 IEDGDSVHDKVMG-IVRSAFKPEFLNRLDE-IILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCR 801 (853)
Q Consensus 726 ~~~~~~~~~~~~~-~l~~~f~peflnRid~-iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 801 (853)
..+ .-.+.|+++|+.|+.. .|..-||.+ +|+..++...+.+..++.. .-...+++++...|..
T Consensus 284 ----------L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~--~~~~~~s~~a~~~L~~- 350 (469)
T PRK10923 284 ----------LEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELG--VEAKLLHPETEAALTR- 350 (469)
T ss_pred ----------HHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHC-
T ss_conf ----------999866081779999864424015846544653499999999999999859--9978789999999974-
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 89822062157999998733
Q gi|254780877|r 802 GYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 802 ~~~~~~GaR~l~r~i~~~i~ 821 (853)
|+=--..|.|+.++++.+.
T Consensus 351 -y~WPGNvrEL~n~ier~~~ 369 (469)
T PRK10923 351 -LAWPGNVRQLENTCRWLTV 369 (469)
T ss_pred -CCCCCHHHHHHHHHHHHHH
T ss_conf -9999879999999999998
No 30
>KOG0735 consensus
Probab=99.59 E-value=7.8e-11 Score=107.00 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=97.4
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 67778668952887407779999999873489984445743788731354217454202454589999998607997699
Q gi|254780877|r 196 RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIIL 275 (853)
Q Consensus 196 r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~il 275 (853)
--+..|.+|-|++|.|||.+|+.++...-... .+.+.-.| ++-+.|++ ---+..-+.+++.+...+ ++.|.
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~-Cs~l~~~~-~e~iQk~l~~vfse~~~~-~PSiI 498 (952)
T KOG0735 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVS-CSTLDGSS-LEKIQKFLNNVFSEALWY-APSII 498 (952)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC------CEEEEEEE-CHHCCCHH-HHHHHHHHHHHHHHHHHH-CCCEE
T ss_conf 33466189867998777699999998751565------06999975-22104204-899999999999998863-78089
Q ss_pred EECCHHHHCCCCCCCCCCC--HH--------HHHHHHHCCCCE-EEEEEECHHHHHHHHHCCHHHHHCCCEE-ECCCCCH
Q ss_conf 9636277302666554335--88--------887653124660-4899744899999730011132023111-1157776
Q gi|254780877|r 276 FIDELHVLVGAGKTDGAMD--AS--------NLLKPSLARGEL-HCIGATTLDEYRKYIEKDPALARRFQSL-LVGEPTV 343 (853)
Q Consensus 276 fide~h~~~gaG~~~g~~D--aa--------n~LKP~LarG~l-~~IgaTT~~Eyrk~iEkD~Al~RRFq~i-~V~Eps~ 343 (853)
+.|++|.|+|+...+++-| ++ .+.|-++.++.+ .+|++ ..|... |-+-=-..++||.+ .+..|..
T Consensus 499 vLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat--~qe~qt-l~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735 499 VLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIAT--GQELQT-LNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred EECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CHHHHH-CCHHHCCCCCEEEEEECCCCCH
T ss_conf 9705035405684447730289999999999999998706857999985--143420-3853347631478881589235
Q ss_pred HHHHHHHHHHHH
Q ss_conf 789999999789
Q gi|254780877|r 344 TDTISILRGLKE 355 (853)
Q Consensus 344 ~~t~~iL~gl~~ 355 (853)
.+--+||+.+-+
T Consensus 576 ~~R~~IL~~~~s 587 (952)
T KOG0735 576 TRRKEILTTIFS 587 (952)
T ss_pred HHHHHHHHHHHH
T ss_conf 679999999997
No 31
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.57 E-value=3.1e-11 Score=110.27 Aligned_cols=219 Identities=21% Similarity=0.316 Sum_probs=159.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHC
Q ss_conf 74594899999999998741012365665128987267861688999999987237765300224477403453201304
Q gi|254780877|r 569 SVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIG 648 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiG 648 (853)
.++|+..++..+...+.+. ...+.| .|+.|+||+||.-+|+++-..=.-.+..|+.+||+-..+.---|-|+|
T Consensus 144 ~lig~S~~m~~v~~~i~~~----A~s~~~---VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseLFG 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKI----ALSQAS---VLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred CCEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf 7454699999999999998----488995---899889985789999999983798899838764787985778999718
Q ss_pred CCCHHCCCCCCCCCCHHHHCC-------CCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf 771120356677421132215-------6410220214414989999999984045788799977830331559548512
Q gi|254780877|r 649 SPPGYVGYEEGGALTEAVRRH-------PYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG 721 (853)
Q Consensus 649 appGYvG~~~gg~Lte~vr~~-------P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G 721 (853)
.-.| ..|.+...+ -.+-++||||+...++++.-||.+|++|.+.--.|...--.|+=||.+||.
T Consensus 217 ~~kg--------aftga~~~~~G~~e~A~gGTLfLdeI~~l~~~~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~~- 287 (457)
T PRK11361 217 HEKG--------AFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNR- 287 (457)
T ss_pred CCCC--------CCCCCCCCCCCCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEECCCC-
T ss_conf 7667--------8788531469861335998263146645239999999999864927856997136653489965787-
Q ss_pred HHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCE-EECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCE-EEECHHHHH
Q ss_conf 6876403267999999999-862885772666815-8628899--8999999999999999999857989-999889999
Q gi|254780877|r 722 AEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEI-ILFEKLR--KEDMAKIVRIQLGRVLSLIKERNIS-MDFDDQVID 796 (853)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~i-v~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~-l~~~~~~~~ 796 (853)
.+.+.+ .+.|+++|+-|+..+ |..-||- .+|+..++...+.++..+. +.. ..+++++++
T Consensus 288 -------------~L~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~---~~~~~~~s~~a~~ 351 (457)
T PRK11361 288 -------------DLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN---QRDIIDIDPMAMS 351 (457)
T ss_pred -------------CHHHHHHCCCCHHHHHHHHCEEEEECCCHHHCHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHHH
T ss_conf -------------859998758323889953022125173854587549999999999999974---9998988999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9997089822062157999998733
Q gi|254780877|r 797 WLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 797 ~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
.|.. |+=--..|.|+++|++.+.
T Consensus 352 ~L~~--y~WPGNvREL~n~ierav~ 374 (457)
T PRK11361 352 LLTA--WSWPGNIRELSNVIERAVV 374 (457)
T ss_pred HHHC--CCCCCHHHHHHHHHHHHHH
T ss_conf 9956--9999799999999999998
No 32
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.55 E-value=6.7e-13 Score=123.79 Aligned_cols=195 Identities=20% Similarity=0.298 Sum_probs=127.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653002244774034532013
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L 646 (853)
-+.+|||++.+..+..++..+ ...+.++.++||.||+|+|||.||+.+|+.+- .++....-..... +.-+
T Consensus 23 l~e~vGQehl~~~l~~~i~a~----~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~---~~~~~~s~~~i~~---~~di 92 (234)
T pfam05496 23 LDEYIGQEKVKENLKIFIEAA----KKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALEK---PGDL 92 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHHH----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEECCHHHHH---HHHH
T ss_conf 666069499999999999988----74277766278878999988899999998408---7537614266643---8999
Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEE--CCC---CCEEECCCC---EEEECC
Q ss_conf 047711203566774211322156410220214414989999999984045788--799---977830331---559548
Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLT--DSQ---GRTVDFRNT---LIIMTS 718 (853)
Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~lt--d~~---G~~v~f~n~---iii~Ts 718 (853)
. +.++ ..+...|+..|||+.-.+..++.||..+++|++- =+. -+++.+.+- +|-.|+
T Consensus 93 ~------------~~l~---~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATT 157 (234)
T pfam05496 93 A------------AILT---NLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATT 157 (234)
T ss_pred H------------HHHH---HCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECC
T ss_conf 9------------9998---458998899966543587688744553346169999636766324652689759985215
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHH
Q ss_conf 51268764032679999999998628857726668158628899899999999999999999985798999988999999
Q gi|254780877|r 719 NLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWL 798 (853)
Q Consensus 719 N~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l 798 (853)
- ...+++.|+.|+.-+..|+||+.+++.+|+..-+.. ..+.++++++++|
T Consensus 158 e---------------------~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~---------l~i~i~~eal~~I 207 (234)
T pfam05496 158 R---------------------AGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARI---------LGVEIDEEGAAEI 207 (234)
T ss_pred C---------------------CCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHH---------CCCCCCHHHHHHH
T ss_conf 6---------------------664777799762112442468999999999999998---------3999599999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHH
Q ss_conf 970898220621579999987
Q gi|254780877|r 799 SCRGYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 799 ~~~~~~~~~GaR~l~r~i~~~ 819 (853)
+..+ .-.+|..-+.+++-
T Consensus 208 A~~s---~Gd~R~ALnlLe~v 225 (234)
T pfam05496 208 ARRS---RGTPRIANRLLRRV 225 (234)
T ss_pred HHHC---CCCHHHHHHHHHHH
T ss_conf 9977---99899998999999
No 33
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.53 E-value=4.1e-13 Score=125.56 Aligned_cols=193 Identities=22% Similarity=0.287 Sum_probs=126.5
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCC--C--C--CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEE
Q ss_conf 56998729853333357899999996336--7--7--7866895288740777999999987348998444574378873
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSR--R--T--KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALD 241 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r--~--~--k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld 241 (853)
+-..-|=-.+|-+||-+.=+ .....+.+ + . =.+.++-|+||||||+++.-+|+.+- +.+..++
T Consensus 14 ~~~~lRP~~l~e~vGQehl~-~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~----------~~~~~~s 82 (234)
T pfam05496 14 VERSLRPRRLDEYIGQEKVK-ENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITS 82 (234)
T ss_pred HHHCCCCCCHHHCCCHHHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEEC
T ss_conf 78554989766606949999-999999998874277766278878999988899999998408----------7537614
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCE-------------
Q ss_conf 1354217454202454589999998607997699963627730266655433588887653124660-------------
Q gi|254780877|r 242 MGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGEL------------- 308 (853)
Q Consensus 242 ~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l------------- 308 (853)
-.. + ++.+.+..-+.....+.||||||||.+= -..-+.|-|++..|.+
T Consensus 83 ~~~----------i-~~~~di~~~l~~~~~~~ILFIDEIHr~n--------K~qqd~Llp~vE~g~i~i~ig~~~~A~~~ 143 (234)
T pfam05496 83 GPA----------L-EKPGDLAAILTNLEPGDVLFIDEIHRLN--------RAVEEILYPAMEDFRLDIVIGKGPSARSI 143 (234)
T ss_pred CHH----------H-HHHHHHHHHHHHCCCCCEEEEECHHHCC--------HHHHHHCCCCCCCCEEEEEECCCCCCEEE
T ss_conf 266----------6-4389999999845899889996654358--------76887445533461699996367663246
Q ss_pred -------EEEEEECHHHHHHHHHCCHHHHHCCCEEE-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf -------48997448999997300111320231111-1577767899999997898654149610158999998633320
Q gi|254780877|r 309 -------HCIGATTLDEYRKYIEKDPALARRFQSLL-VGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY 380 (853)
Q Consensus 309 -------~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~-V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY 380 (853)
..|||||-. .+ =.++|-.||..+. .+.-+.++...||+.... ..++.++++|++..++.|.==
T Consensus 144 ~~e~P~FtLIgATTe~--~~---l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~----~l~i~i~~eal~~IA~~s~Gd 214 (234)
T pfam05496 144 RLDLPPFTLVGATTRA--GL---LTSPLRDRFGIVLRLEFYSVEELEEIVKRSAR----ILGVEIDEEGAAEIARRSRGT 214 (234)
T ss_pred ECCCCCEEEEEECCCC--CC---CCHHHHHHHHHEEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCC
T ss_conf 5268975998521566--64---77779976211244246899999999999999----839995999999999977998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2457674778999999999875410
Q gi|254780877|r 381 ITDRFLPDKAIDLMDEASARVRMQI 405 (853)
Q Consensus 381 i~~r~lPDKAIDllDeA~A~~~i~~ 405 (853)
|-.|+.||+.+.++..++.
T Consensus 215 ------~R~ALnlLe~v~d~a~~~~ 233 (234)
T pfam05496 215 ------PRIANRLLRRVRDFAQVKG 233 (234)
T ss_pred ------HHHHHHHHHHHHHHHHHHC
T ss_conf ------9999899999999998734
No 34
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.52 E-value=4e-11 Score=109.35 Aligned_cols=220 Identities=19% Similarity=0.286 Sum_probs=161.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHC
Q ss_conf 74594899999999998741012365665128987267861688999999987237765300224477403453201304
Q gi|254780877|r 569 SVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIG 648 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiG 648 (853)
.+||+..|+..+.+.+.+. ...+.| .|+.|.||+||.-+|+++-..=.-.+..|+.+||+...+..--+-|+|
T Consensus 140 ~liG~S~am~~v~~~i~~~----A~s~~p---VLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV----APSEAT---VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred CCEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 8666899999999999998----488994---899899981099999999965787789807987898984555898617
Q ss_pred CCCHHCCCCCCCCCCHHHHC-------CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf 77112035667742113221-------56410220214414989999999984045788799977830331559548512
Q gi|254780877|r 649 SPPGYVGYEEGGALTEAVRR-------HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG 721 (853)
Q Consensus 649 appGYvG~~~gg~Lte~vr~-------~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G 721 (853)
.-.|. .|.+... --.+.++||||+...++++.-||.++++|.++--.|...--.|+=||.+||.-
T Consensus 213 ~~~ga--------ftga~~~~~g~~~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~ 284 (441)
T PRK10365 213 HEKGA--------FTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred CCCCC--------CCCCCCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCC
T ss_conf 75568--------7896534689877889982550231529999999999877752100058873441363799837889
Q ss_pred HHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCC-EEECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf 6876403267999999999-86288577266681-58628899--89999999999999999998579899998899999
Q gi|254780877|r 722 AEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDE-IILFEKLR--KEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDW 797 (853)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~-iv~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~ 797 (853)
+.+.+ .+.|+++|+-|+.. .|..-||. .+|+..++...+.++..+... -.-.+++++.+.
T Consensus 285 --------------l~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~--~~~~~s~~a~~~ 348 (441)
T PRK10365 285 --------------LAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRK--AVKGFTPQAMDL 348 (441)
T ss_pred --------------HHHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHH
T ss_conf --------------9999881982589998860111378260006200999999999999998499--988889999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 997089822062157999998733
Q gi|254780877|r 798 LSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 798 l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
|.. |+=--..|.|+.+|++.+.
T Consensus 349 L~~--y~WPGNvREL~n~iera~~ 370 (441)
T PRK10365 349 LIH--YDWPGNIRELENAVERAVV 370 (441)
T ss_pred HHC--CCCCCHHHHHHHHHHHHHH
T ss_conf 970--9999899999999999999
No 35
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=99.50 E-value=4.6e-13 Score=125.14 Aligned_cols=85 Identities=49% Similarity=0.899 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99899999999999999999985798999988999999970898220621579999987334999999708688978899
Q gi|254780877|r 761 LRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIE 840 (853)
Q Consensus 761 l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~ 840 (853)
|+.+++.+|++++++++.+|+..+++.+.+++++++||+++||++.||||||+|.|+++|++|||+.++.+.+.+|++++
T Consensus 1 L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~~GAR~l~r~I~~~i~~~la~~il~~~~~~~~~i~ 80 (89)
T pfam10431 1 LSKEELRQIVDLQLKRLQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDTVR 80 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 98899999999999999999997890799868999999983567567947899999999999999999849899979999
Q ss_pred EEEEC
Q ss_conf 99989
Q gi|254780877|r 841 VFVDD 845 (853)
Q Consensus 841 i~~~~ 845 (853)
+++++
T Consensus 81 i~~~~ 85 (89)
T pfam10431 81 VDVDD 85 (89)
T ss_pred EEECC
T ss_conf 97158
No 36
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.9e-12 Score=117.57 Aligned_cols=96 Identities=22% Similarity=0.427 Sum_probs=74.8
Q ss_pred CCHHHHCCCCCEEECCCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC-----CCCCCHHHHH
Q ss_conf 8857726668158628899899999999----999999999985798999988999999970898-----2206215799
Q gi|254780877|r 744 FKPEFLNRLDEIILFEKLRKEDMAKIVR----IQLGRVLSLIKERNISMDFDDQVIDWLSCRGYD-----PSYGARPLKR 814 (853)
Q Consensus 744 f~peflnRid~iv~F~~l~~~~~~~i~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GaR~l~r 814 (853)
+-||+-+|+.--|-..+|+.+++.+|+. -.+++....++-.++.+.|++++++.|++-.|. ...|||.|.-
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhT 398 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHT 398 (444)
T ss_pred CCHHHCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 17666277734887044899899999637607899999999731583488537999999999998554300011788999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99987334999999708688978899999
Q gi|254780877|r 815 VIQRYIQNPLAERVLSQTISDGDSIEVFV 843 (853)
Q Consensus 815 ~i~~~i~~~la~~il~~~~~~g~~i~i~~ 843 (853)
++++.+++ .-....-.+|.+|.|+.
T Consensus 399 vlErlLed----iSFeA~d~~g~~v~Id~ 423 (444)
T COG1220 399 VLERLLED----ISFEAPDMSGQKVTIDA 423 (444)
T ss_pred HHHHHHHH----HCCCCCCCCCCEEEECH
T ss_conf 99999987----07058778997589758
No 37
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.46 E-value=4.9e-12 Score=116.80 Aligned_cols=184 Identities=22% Similarity=0.388 Sum_probs=124.4
Q ss_pred HHHCCHHHHHHH---HHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 674594899999---99999874101236566512898726786168899999998723776530022447740345320
Q gi|254780877|r 568 KSVIGQSAAVES---VSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVS 644 (853)
Q Consensus 568 ~~v~gq~~ai~~---v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs 644 (853)
+.||||++.+.. +.+.|. .++ +.|++|.||+|||||.+|+.||..+ ...++.++-+. ..+.
T Consensus 13 de~vGQ~hllg~~~~L~~~i~--------~~~-~~s~Il~GPPG~GKTTlA~iiA~~~---~~~f~~lnA~~----~gv~ 76 (417)
T PRK13342 13 DEVVGQEHLLGPGKPLRRMIE--------AGR-LSSMILWGPPGTGKTTLARIIAGAT---DAEFEALSAVT----SGVK 76 (417)
T ss_pred HHHCCCHHHHCCCHHHHHHHH--------CCC-CCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCC----CCHH
T ss_conf 885798776089719999997--------699-9759988969998999999999986---89889961410----3889
Q ss_pred HHHCCCCHHCCCCCCCCCCHHHHC---CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf 130477112035667742113221---56410220214414989999999984045788799977830331559548512
Q gi|254780877|r 645 RLIGSPPGYVGYEEGGALTEAVRR---HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG 721 (853)
Q Consensus 645 ~LiGappGYvG~~~gg~Lte~vr~---~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G 721 (853)
-+- ...+..++ .-..|+++|||..-+..-+|.||..+++|++ ++|-.||.
T Consensus 77 dir-------------~ii~~a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~i------------iLIgATTE-- 129 (417)
T PRK13342 77 DLR-------------EVIEEAKQSRLGRRTILFIDEIHRFNKAQQDALLPHVEDGTI------------TLIGATTE-- 129 (417)
T ss_pred HHH-------------HHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCE------------EEEEECCC--
T ss_conf 999-------------999998863148965999978200588999999875112656------------99974157--
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 68764032679999999998628857726668158628899899999999999999999985798999988999999970
Q gi|254780877|r 722 AEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCR 801 (853)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 801 (853)
++. -...|.++.|. .++.|+||+.+++..|+.+-++. . ...+..+.++++++++|++.
T Consensus 130 ------NP~-----------f~in~aLlSRc-~vf~l~~L~~~di~~iL~ral~~-e---~~~~~~i~i~~~al~~i~~~ 187 (417)
T PRK13342 130 ------NPS-----------FEVNPALLSRA-QVFELKPLSEEDLEQLLKRALED-E---RGLGRKLELDDEALDALARL 187 (417)
T ss_pred ------CCH-----------HHCCHHHHHHH-HHEECCCCCHHHHHHHHHHHHHH-H---HCCCCCCCCCHHHHHHHHHH
T ss_conf ------922-----------53489898565-70020589999999999999987-7---43378877699999999981
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 898220621579999987
Q gi|254780877|r 802 GYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 802 ~~~~~~GaR~l~r~i~~~ 819 (853)
+ .--||..-..++--
T Consensus 188 s---~GDaR~aLN~LE~a 202 (417)
T PRK13342 188 A---DGDARRALNLLELA 202 (417)
T ss_pred C---CCCHHHHHHHHHHH
T ss_conf 4---98599999999999
No 38
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.43 E-value=4.3e-12 Score=117.21 Aligned_cols=208 Identities=22% Similarity=0.266 Sum_probs=140.7
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHH----------HCCCEEE
Q ss_conf 699872985333335789999999633677786689528874077799999998734899844----------4574378
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPES----------LKGKRLM 238 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~----------l~~~~i~ 238 (853)
+++.|=-.+|-|+|-+.-++.+...+..++-.+.++.|+||+|||+.+..+|+.+.-...... -+++..+
T Consensus 6 veKYRP~~~~dvvGq~~i~~~L~~~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i 85 (337)
T PRK12402 6 TEKYRPSLFEDILGQESVVDHLSALAASGNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYL 85 (337)
T ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE
T ss_conf 21418897998039799999999999779987698889298489999999999967997567833311653113564001
Q ss_pred EEEH--HHHHCCCCCCCH-HHHHHHHHHHHHHHCC----CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC--CCCEE
Q ss_conf 8731--354217454202-4545899999986079----9769996362773026665543358888765312--46604
Q gi|254780877|r 239 ALDM--GALIAGAKFRGE-FEERLKSLLCEIRSED----GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA--RGELH 309 (853)
Q Consensus 239 ~ld~--~~l~ag~~~rg~-~e~r~~~i~~~~~~~~----~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La--rG~l~ 309 (853)
.-|- ..++.+..-.+. .-.-++.++++..... +--|++|||+|.+ +-+|.|-|...|. ....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~l--------t~~Aq~aLlk~lEe~~~~~~ 157 (337)
T PRK12402 86 VEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEAL--------REDAQQALRRIMERYSETCR 157 (337)
T ss_pred ECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCCCEE
T ss_conf 0166423442015332773789999999998614887788049997071317--------99999999988740887669
Q ss_pred EEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 89974489999973001113202311111577767899999997898654149610158999998633320245767477
Q gi|254780877|r 310 CIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDK 389 (853)
Q Consensus 310 ~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDK 389 (853)
+|-+||.- .+.+ +++-.|-+.+....|+.++....|+.+... .++.|+++++...+..|.-- .-+
T Consensus 158 fIl~t~~~--~~ii---~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~----E~i~~~~~~l~~ia~~s~Gd------lR~ 222 (337)
T PRK12402 158 FIFSTTQP--SKLI---PPIRSRCLPLFFRPVPDDEIRSVLESIAAA----EGVEISDDGLDLIAYYAEGD------LRK 222 (337)
T ss_pred EEEECCCC--CCCC---HHHHHHCEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCC------HHH
T ss_conf 98723864--4475---247762445435898999999999999998----49998999999999986998------999
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999998
Q gi|254780877|r 390 AIDLMDEASAR 400 (853)
Q Consensus 390 AIDllDeA~A~ 400 (853)
||.+|. +++.
T Consensus 223 ain~Lq-~~~~ 232 (337)
T PRK12402 223 AILTLQ-LAAE 232 (337)
T ss_pred HHHHHH-HHHH
T ss_conf 999999-9987
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.43 E-value=4.5e-12 Score=117.07 Aligned_cols=193 Identities=28% Similarity=0.418 Sum_probs=134.5
Q ss_pred HHHHHHHCCCCCCCCC------HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE
Q ss_conf 3569987298533333------5789999999633677786689528874077799999998734899844457437887
Q gi|254780877|r 167 DLTEEARNGKLDPVIG------RDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL 240 (853)
Q Consensus 167 DLTe~Ar~GkLDPVIG------Re~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l 240 (853)
-|..+-|-..||-+|| -+.-++|+++ -.+=.+-||-|+||||||+|.+-+|+.. ++.+..+
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~ 79 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEAL 79 (436)
T ss_pred CHHHHHCCCCHHHHCCHHHHHCCCCHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEE
T ss_conf 76777097778785571866189943899996---4998605777899988889999998761----------7766995
Q ss_pred EHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHH
Q ss_conf 3135421745420245458999999860799---7699963627730266655433588887653124660489974489
Q gi|254780877|r 241 DMGALIAGAKFRGEFEERLKSLLCEIRSEDG---EIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLD 317 (853)
Q Consensus 241 d~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~---~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~ 317 (853)
+ +..+|. ..++.++++.++..+ ..||||||||-+=- + . -..|-|++.+|.|..|||||..
T Consensus 80 s--Av~~gv-------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK---~--Q---QD~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 80 S--AVTSGV-------KDLREIIEEARKNRLLGRRTILFLDEIHRFNK---A--Q---QDALLPHVENGTIILIGATTEN 142 (436)
T ss_pred C--CCCCCH-------HHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCH---H--H---HHHHHHHHCCCEEEEEECCCCC
T ss_conf 1--523467-------99999999999987258834998722533374---4--5---6551033248868999626789
Q ss_pred HHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHH-HHHHHHHHC--CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99997300111320231111157776789999999-789865414--961015899999863332024576747789999
Q gi|254780877|r 318 EYRKYIEKDPALARRFQSLLVGEPTVTDTISILRG-LKERYEQHH--KVRISDSALVSAAVLSNRYITDRFLPDKAIDLM 394 (853)
Q Consensus 318 Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~g-l~~~yE~~H--~V~i~d~al~~av~ls~rYi~~r~lPDKAIDll 394 (853)
-| |+=.+||-.|-+.-..+.-|.++....|+- +...-..+- .+.++++|+...|.+|+-= --+|+.+|
T Consensus 143 Ps---F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD------~R~aLN~L 213 (436)
T COG2256 143 PS---FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD------ARRALNLL 213 (436)
T ss_pred CC---EEECHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCH------HHHHHHHH
T ss_conf 87---1403888611041565169989999999999865413777655668889999999862861------99998899
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780877|r 395 DEAS 398 (853)
Q Consensus 395 DeA~ 398 (853)
+.+.
T Consensus 214 E~~~ 217 (436)
T COG2256 214 ELAA 217 (436)
T ss_pred HHHH
T ss_conf 9999
No 40
>KOG0741 consensus
Probab=99.42 E-value=1.7e-11 Score=112.43 Aligned_cols=195 Identities=27% Similarity=0.444 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE
Q ss_conf 78864435699872985333335789999999633677786689528874077799999998734899844457437887
Q gi|254780877|r 161 LKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL 240 (853)
Q Consensus 161 L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l 240 (853)
|++--.++=.+|..-+.=|- .+++-|.-++-...+|-|+||.|||-++.-+.... +..-|...-|-.|.
T Consensus 226 Ld~EFs~IFRRAFAsRvFpp--------~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkML-NArePKIVNGPeIL-- 294 (744)
T KOG0741 226 LDKEFSDIFRRAFASRVFPP--------EVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKML-NAREPKIVNGPEIL-- 294 (744)
T ss_pred CHHHHHHHHHHHHHHHCCCH--------HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCCCHHHH--
T ss_conf 11789999999877632998--------89987195112357887799987018999987874-57998634757889--
Q ss_pred EHHHHHCCCCCCCHHHHHHHHHHHHHHHC-------CCCEEEEECCHHHHCC-CCCCCCC---CC-HHHHHHHHH----C
Q ss_conf 31354217454202454589999998607-------9976999636277302-6665543---35-888876531----2
Q gi|254780877|r 241 DMGALIAGAKFRGEFEERLKSLLCEIRSE-------DGEIILFIDELHVLVG-AGKTDGA---MD-ASNLLKPSL----A 304 (853)
Q Consensus 241 d~~~l~ag~~~rg~~e~r~~~i~~~~~~~-------~~~~ilfide~h~~~g-aG~~~g~---~D-aan~LKP~L----a 304 (853)
.||.||=|+-++.+..++++- .+=-|+.+|||..|-- -|+..|+ -| +-|-|-.-+ +
T Consensus 295 --------~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq 366 (744)
T KOG0741 295 --------NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ 366 (744)
T ss_pred --------HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHH
T ss_conf --------876063078899998757999984376677259996346799974488789886318999999985322876
Q ss_pred CCCEEEEEEECHHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466048997448999997300111320--2311-111577767899999997898654149610158999998633320
Q gi|254780877|r 305 RGELHCIGATTLDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY 380 (853)
Q Consensus 305 rG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY 380 (853)
--.|-+||.|--.. .| |-||-| ||+. +.|.=|++.--+.||+-...+++.|.-. =.|=-+...+.|++-|
T Consensus 367 LNNILVIGMTNR~D---lI--DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l-~~dVdl~elA~lTKNf 439 (744)
T KOG0741 367 LNNILVIGMTNRKD---LI--DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKL-SADVDLKELAALTKNF 439 (744)
T ss_pred HHCEEEEECCCCHH---HH--HHHHCCCCCEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCC-CCCCCHHHHHHHHCCC
T ss_conf 61678994047366---67--88755887169999984688767278887144556651787-7776989999985578
No 41
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.41 E-value=1e-12 Score=122.26 Aligned_cols=113 Identities=31% Similarity=0.510 Sum_probs=86.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCC---CHHCCCCCCCCCCHHHHCCCCCEEEEH
Q ss_conf 98726786168899999998723776530022447740345320130477---112035667742113221564102202
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSP---PGYVGYEEGGALTEAVRRHPYQVVLFD 677 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGap---pGYvG~~~gg~Lte~vr~~P~sVil~D 677 (853)
.|+.||+|+|||++|+.+|+.+.+ ..+.++.+++.++. +.|+|.. +|...|.. |.|+.+++. + .|++||
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~--~~~~~i~~~~~~~~---~dl~G~~~~~~~~~~~~~-g~l~~a~~~-g-~vl~lD 73 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSN--RPVFYVQLTRDTTE---EDLKGRRNIANGTTSWVD-GPLVRAARE-G-EIAVLD 73 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCC--CCCHHHCCCCCCCH---HHCCCCEECCCCCEEEEC-CHHHCCCCC-C-CEEEEC
T ss_conf 899989975699999999998079--83111214655652---220573423799357815-514101012-8-689963
Q ss_pred HHHHCCHHHHHHHHHHHHCCEEECCCC-CEEEC------CCCEEEECCCHH
Q ss_conf 144149899999999840457887999-77830------331559548512
Q gi|254780877|r 678 EIEKAHSDVHNILLQVLDDGRLTDSQG-RTVDF------RNTLIIMTSNLG 721 (853)
Q Consensus 678 EiEKah~~v~~~llqild~G~ltd~~G-~~v~f------~n~iii~TsN~G 721 (853)
||++|||+|++.|+++||+++++-..+ ..+.. .|..||+|+|-+
T Consensus 74 Ein~a~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~ 124 (139)
T pfam07728 74 EINRANPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL 124 (139)
T ss_pred CHHHCCHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC
T ss_conf 434489999999999974896983689727336666789996999975896
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.41 E-value=3.9e-11 Score=109.42 Aligned_cols=163 Identities=22% Similarity=0.305 Sum_probs=107.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 66895288740777999999987348998444574378873135421745420245458999999860799769996362
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDEL 280 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~ 280 (853)
|.++.|+||+|||+++.-+|+-...=. .|..-.+++.+-+.|+++ |.|+-+.+.+.+++.. ..| ||||||.
T Consensus 61 h~vF~GnPGTGKTTVARl~a~il~~lG---~L~~g~vve~~r~dLvg~--yvG~Ta~kt~~~i~~a--~GG--VLfIDEA 131 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYRLG---YIKKGHLITVTRDDLVGQ--YIGHTAPKTKEVLKKA--MGG--VLFIDEA 131 (287)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---CCCCCEEEEECHHHHCCC--CCCCCHHHHHHHHHHC--CCC--EEEEECH
T ss_conf 388878998679999999999999869---955895899535884163--5352169999999964--598--7998244
Q ss_pred HHHCCCCCCC-CCCCHHHHHHHHHC--CCCEEEEEEECHHHHHHHHHCCHHHHHCCCE-EECCCCCHHHHHHHHHHHHHH
Q ss_conf 7730266655-43358888765312--4660489974489999973001113202311-111577767899999997898
Q gi|254780877|r 281 HVLVGAGKTD-GAMDASNLLKPSLA--RGELHCIGATTLDEYRKYIEKDPALARRFQS-LLVGEPTVTDTISILRGLKER 356 (853)
Q Consensus 281 h~~~gaG~~~-g~~Daan~LKP~La--rG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~-i~V~Eps~~~t~~iL~gl~~~ 356 (853)
|+|...++.. -+..|-+.|-..+. |+++-||-|--++|-.++++.+|+|.+||.. +..+.-|.++-..|++....
T Consensus 132 Y~L~~~~~~~dfg~eaidtLl~~me~~~~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~- 210 (287)
T CHL00181 132 YYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMMLE- 210 (287)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHH-
T ss_conf 6535788999837999999999987079988999846789999999859047876887237798599999999999999-
Q ss_pred HHHHCCCCCCHHHHHHHHHH
Q ss_conf 65414961015899999863
Q gi|254780877|r 357 YEQHHKVRISDSALVSAAVL 376 (853)
Q Consensus 357 yE~~H~V~i~d~al~~av~l 376 (853)
.++..++++|.......
T Consensus 211 ---~~~~~l~~~a~~~l~~~ 227 (287)
T CHL00181 211 ---EQQYQLTPEAEKVLLDY 227 (287)
T ss_pred ---HCCCCCCHHHHHHHHHH
T ss_conf ---86982587999999999
No 43
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.39 E-value=1.9e-11 Score=111.96 Aligned_cols=229 Identities=19% Similarity=0.303 Sum_probs=163.7
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCH
Q ss_conf 77674594899999999998741012365665128987267861688999999987237765300224477403453201
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSR 645 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~ 645 (853)
.+..+||+..++..+...+++. ...+.|+ |+.|-+|+||+.+|+++-..=.-....|+.+||+.+.+..--+.
T Consensus 4 ~~~~liG~S~~m~~v~~~~~~~----A~~~~pV---LI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~ 76 (325)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSHL----APLDKPV---LIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 (325)
T ss_pred CCCCCEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 7899858999999999999999----6889998---98898983799999999965886799977887798997788998
Q ss_pred HHCCCCH-HCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHH
Q ss_conf 3047711-203566774211322156410220214414989999999984045788799977830331559548512687
Q gi|254780877|r 646 LIGSPPG-YVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEY 724 (853)
Q Consensus 646 LiGappG-YvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~ 724 (853)
|+|..+| +.|.... ....+.+--.+.++||||+...++++.-||+++++|.+.--.|..--..|+=||+|||.-
T Consensus 77 LFG~~~g~~~~~~~~--~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~--- 151 (325)
T PRK11608 77 LFGHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD--- 151 (325)
T ss_pred HCCCCCCCCCCCCCC--CCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHH---
T ss_conf 727755676775324--687343568986997374547999999999998649088579987665646887133220---
Q ss_pred HHCCHHHHHHHHHHHHHHHCCHHHHCCCCC-EEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEE--EECHHHHHHHH
Q ss_conf 640326799999999986288577266681-586288998--9999999999999999998579899--99889999999
Q gi|254780877|r 725 LIEDGDSVHDKVMGIVRSAFKPEFLNRLDE-IILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISM--DFDDQVIDWLS 799 (853)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~~f~peflnRid~-iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l--~~~~~~~~~l~ 799 (853)
.....-...|+++|+.|+.. .|..-||.+ +|+..+++.++.++.+++ +..+ .+++++.+.|.
T Consensus 152 ----------l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~---~~~~~~~~s~~a~~~L~ 218 (325)
T PRK11608 152 ----------LPAMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL---GLPLFPGFTERARETLL 218 (325)
T ss_pred ----------HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHH
T ss_conf ----------89999839567999856530111586845471019999999999999982---99988888999999996
Q ss_pred HCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7089822062157999998733
Q gi|254780877|r 800 CRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 800 ~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
. |+=--..|.|+++|++.+.
T Consensus 219 ~--y~WPGNvrEL~n~ierav~ 238 (325)
T PRK11608 219 N--YRWPGNIRELKNVVERSVY 238 (325)
T ss_pred C--CCCCCHHHHHHHHHHHHHH
T ss_conf 1--9999659999999999998
No 44
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.39 E-value=5.3e-12 Score=116.50 Aligned_cols=198 Identities=26% Similarity=0.413 Sum_probs=124.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHH--------HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 767459489999999999874--------101236566512898726786168899999998723776530022447740
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRF--------RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~--------~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
-.-|-|.+++++.+-.+|... +.|+..| - -.||.||+|+|||.+||++|..+ .-++++++.|++.
T Consensus 131 ~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pP---k-GvLLyGPPGtGKTllAkAvA~e~---~~~fi~v~~s~l~ 203 (390)
T PRK03992 131 YEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPP---K-GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV 203 (390)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC---C-EEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHHH
T ss_conf 466149899999999999998659899997699999---7-27868989997899999999874---8887996679975
Q ss_pred CCCCCCHHHCCCCHHCCCCCC--CCCCHHHH-CCCCCEEEEHHHHH-----------CCHHHHHHHHHHHHC--CEEECC
Q ss_conf 345320130477112035667--74211322-15641022021441-----------498999999998404--578879
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEG--GALTEAVR-RHPYQVVLFDEIEK-----------AHSDVHNILLQVLDD--GRLTDS 702 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~g--g~Lte~vr-~~P~sVil~DEiEK-----------ah~~v~~~llqild~--G~ltd~ 702 (853)
. + |+|-.+. -.+-+.-| ..| |||+||||+- ++.+|...++|+|.+ |. ++
T Consensus 204 s-----k-------~vGesek~vr~lF~~Ar~~aP-~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~--~~ 268 (390)
T PRK03992 204 Q-----K-------FIGEGARLVRELFELAREKAP-SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF--DP 268 (390)
T ss_pred H-----C-------CCCHHHHHHHHHHHHHHHHCC-CEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CC
T ss_conf 2-----4-------541799999999999997099-0897143256633567788862088999999999974487--77
Q ss_pred CCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH--CCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99778303315595485126876403267999999999862885772--6668158628899899999999999999999
Q gi|254780877|r 703 QGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFL--NRLDEIILFEKLRKEDMAKIVRIQLGRVLSL 780 (853)
Q Consensus 703 ~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefl--nRid~iv~F~~l~~~~~~~i~~~~l~~l~~~ 780 (853)
-.|.+||++||- .+. .-|.|+ +|+|..|.|.+-+.+....|++.++..
T Consensus 269 ------~~~V~VIaATNr--------pd~------------LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~---- 318 (390)
T PRK03992 269 ------RGNVKIIAATNR--------PDI------------LDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRK---- 318 (390)
T ss_pred ------CCCEEEEEECCC--------CHH------------CCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCC----
T ss_conf ------788279960698--------100------------59777547765238870894999999999998479----
Q ss_pred HHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98579899998899999997089822062157999998733499
Q gi|254780877|r 781 IKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPL 824 (853)
Q Consensus 781 l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~l 824 (853)
+.+. ++--++.|++. ...|-+..|+.+.+.--..++
T Consensus 319 -----~~l~-~dvdl~~lA~~--T~G~SGADI~~lc~EA~m~Ai 354 (390)
T PRK03992 319 -----MNLA-DDVDLEELAEL--TEGASGADLKAICTEAGMFAI 354 (390)
T ss_pred -----CCCC-CCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHH
T ss_conf -----9999-88899999976--879989999999999999999
No 45
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.39 E-value=7e-10 Score=99.28 Aligned_cols=139 Identities=22% Similarity=0.331 Sum_probs=101.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 66895288740777999999987348998444574378873135421745420245458999999860799769996362
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDEL 280 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~ 280 (853)
.++|+|+||+|||-++..+|.. -+.-++.+|++.+++ +|.|+-|.+++.++..++.. .++|||||||
T Consensus 261 GvLL~GpPG~GKtl~AKAvA~e----------~~~p~l~l~~~~l~~--~~vGesE~~~r~~f~~A~~~-aP~ilfiDEi 327 (491)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANE----------WNLPLLRLDVGKLFG--GIVGESESRMRQMIQLAETI-SPCILWIDEI 327 (491)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----------HCCCEEEEEHHHHHH--HHCCHHHHHHHHHHHHHHHH-CCEEEEEEHH
T ss_conf 7999799998789999999866----------389469966799756--00670499999999999861-9858997465
Q ss_pred HHHCCCCCCC--CCCC---HHHHHHHHHC-CCCEEEEEEECHHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHHHHHHH
Q ss_conf 7730266655--4335---8888765312-466048997448999997300111320--2311-1115777678999999
Q gi|254780877|r 281 HVLVGAGKTD--GAMD---ASNLLKPSLA-RGELHCIGATTLDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDTISILR 351 (853)
Q Consensus 281 h~~~gaG~~~--g~~D---aan~LKP~La-rG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~ 351 (853)
-..++.+++. ++.. .+.+|. .|. +..--+|-|||.. --.=|+||.| ||.. +.|.-|+.++-.+|++
T Consensus 328 dk~~~~~~~~~d~g~s~rv~~~~Lt-~m~e~~~~VfViattN~----~~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ 402 (491)
T CHL00195 328 DKAFSGLDSKGDSGTSNRVLATFIT-WLSEKKSPVFVVATANN----IDSLPLELLRKGRFDEIFFLDLPNLEERELIFK 402 (491)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHH-HHCCCCCCEEEEEECCC----CCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 4542588888887232899999999-86468997699995899----755898770898777047648959899999999
Q ss_pred HHHHHH
Q ss_conf 978986
Q gi|254780877|r 352 GLKERY 357 (853)
Q Consensus 352 gl~~~y 357 (853)
-...++
T Consensus 403 ihl~~~ 408 (491)
T CHL00195 403 IHLKRF 408 (491)
T ss_pred HHHHCC
T ss_conf 998544
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.38 E-value=1.4e-10 Score=104.94 Aligned_cols=230 Identities=21% Similarity=0.352 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHH---H----HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 0000012355477674594899999999---9----98741012365665128987267861688999999987237765
Q gi|254780877|r 555 DREKFLRIETEISKSVIGQSAAVESVSN---A----LRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDEN 627 (853)
Q Consensus 555 E~ekLl~l~~~l~~~v~gq~~ai~~v~~---~----~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~ 627 (853)
+..++..+-+.|.+.+||-+...+.|-. . ..|...|+..+... --++|+||+|+|||..|+.+|+.|+.-
T Consensus 10 ~~~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s-~h~vF~GnPGTGKTTVARl~a~il~~l-- 86 (287)
T CHL00181 10 NKTQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPG-LHMSFTGSPGTGKTTVALKMADILYRL-- 86 (287)
T ss_pred HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHC--
T ss_conf 45349999999988646969999999999999999999998799988876-538887899867999999999999986--
Q ss_pred CCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCC-HHHHCCCCCEEEEHHHHH---------CCHHHHHHHHHHHHCC
Q ss_conf 300224477403453201304771120356677421-132215641022021441---------4989999999984045
Q gi|254780877|r 628 SMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALT-EAVRRHPYQVVLFDEIEK---------AHSDVHNILLQVLDDG 697 (853)
Q Consensus 628 ~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lt-e~vr~~P~sVil~DEiEK---------ah~~v~~~llqild~G 697 (853)
.++. =..+.| -+-+.|+| +|||... .-| +.+.+.--+|+++||--- ...++++.|++.+++.
T Consensus 87 G~L~--~g~vve-~~r~dLvg---~yvG~Ta--~kt~~~i~~a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~ 158 (287)
T CHL00181 87 GYIK--KGHLIT-VTRDDLVG---QYIGHTA--PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQ 158 (287)
T ss_pred CCCC--CCEEEE-ECHHHHCC---CCCCCCH--HHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9955--895899-53588416---3535216--99999999645987998244653578899983799999999998707
Q ss_pred EEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 78879997783033155954851268764032679999999998628857726668158628899899999999999999
Q gi|254780877|r 698 RLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRV 777 (853)
Q Consensus 698 ~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l 777 (853)
+ + +.++|+.- ..+. |+.... ..|-|-.|+...+.|..++.+++.+|+..++.
T Consensus 159 ~-----~------~lvvI~AG---------Y~~e-----M~~fl~-~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~-- 210 (287)
T CHL00181 159 R-----D------DLVVIFAG---------YKDR-----MDKFYE-SNPGLSSRVANHVDFPDYTPEELLQIAKMMLE-- 210 (287)
T ss_pred C-----C------CEEEEEEC---------CHHH-----HHHHHH-HCCCHHHHCCCEEECCCCCHHHHHHHHHHHHH--
T ss_conf 9-----9------88999846---------7899-----999998-59047876887237798599999999999999--
Q ss_pred HHHHHHCCCEEEECHHH----HHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998579899998899----99999708982206-2157999998733499999970
Q gi|254780877|r 778 LSLIKERNISMDFDDQV----IDWLSCRGYDPSYG-ARPLKRVIQRYIQNPLAERVLS 830 (853)
Q Consensus 778 ~~~l~~~~i~l~~~~~~----~~~l~~~~~~~~~G-aR~l~r~i~~~i~~~la~~il~ 830 (853)
.+++. +++++ .+++....-.+.|| ||.+++.+++.+...-.+....
T Consensus 211 -----~~~~~--l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~~qa~Rl~~~ 261 (287)
T CHL00181 211 -----EQQYQ--LTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARMRQANRIFAS 261 (287)
T ss_pred -----HCCCC--CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -----86982--5879999999999985089998748999999999999999886567
No 47
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.37 E-value=5.2e-11 Score=108.42 Aligned_cols=218 Identities=22% Similarity=0.312 Sum_probs=162.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
..+|||..++..+-+.|.+. .+.+-|+ |..|-|||||..+|+++-..=--.+..||.+||+-..+.-.-|.|+
T Consensus 186 ~elIG~S~~m~~l~~~i~~v----A~sd~pV---LI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLF 258 (510)
T PRK05022 186 GEMIGQSPAMQQLKKEIEVV----AASDLNV---LITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELF 258 (510)
T ss_pred CCEEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHC
T ss_conf 97520899999999999999----6899988---9889898139999999996688789985788899998567899865
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC---CCCCEEECCCCEEEEC
Q ss_conf 47711203566774211322156-------4102202144149899999999840457887---9997783033155954
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD---SQGRTVDFRNTLIIMT 717 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd---~~G~~v~f~n~iii~T 717 (853)
|--. |..|.++..+| .+.++||||+...++++.-||.+|++|.+.- ..-+.+|+| ||.+
T Consensus 259 Gh~k--------GaFtGA~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvR---IIAA 327 (510)
T PRK05022 259 GHVK--------GAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVR---VIAA 327 (510)
T ss_pred CCCC--------CCCCCCCCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEE---EEEE
T ss_conf 9777--------8868865567881017789879875745499999999999984795885589946666689---9960
Q ss_pred CCHHHHHHHCCHHHHHHHHHHH-HHHHCCHHHHCCCCCE-EECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 8512687640326799999999-9862885772666815-86288998--999999999999999999857989999889
Q gi|254780877|r 718 SNLGAEYLIEDGDSVHDKVMGI-VRSAFKPEFLNRLDEI-ILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQ 793 (853)
Q Consensus 718 sN~G~~~~~~~~~~~~~~~~~~-l~~~f~peflnRid~i-v~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~ 793 (853)
||- ...+. -.+.|+.+|..|+..+ |..-||-+ +|+.-++..++++...++.... +.++++
T Consensus 328 Tnr--------------dL~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~--~~ls~e 391 (510)
T PRK05022 328 TNR--------------DLREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSS--LRLSPD 391 (510)
T ss_pred CCC--------------CHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC--CCCCHH
T ss_conf 783--------------5999988396389999876204034808655554099999999999999829898--988899
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999997089822062157999998733
Q gi|254780877|r 794 VIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 794 ~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
+.+.|.. |+=--..|.|+.+|++.+.
T Consensus 392 Al~~L~~--Y~WPGNVRELenvIeRA~l 417 (510)
T PRK05022 392 AQAALLQ--YDWPGNVRELEHVISRAAL 417 (510)
T ss_pred HHHHHHC--CCCCCHHHHHHHHHHHHHH
T ss_conf 9999970--9999789999999999999
No 48
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.36 E-value=8.3e-11 Score=106.78 Aligned_cols=223 Identities=19% Similarity=0.264 Sum_probs=163.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
..++|++.++..+....+++- ..+-| .|..|.||+||+.+|+++-..=--....++.+||+-..+..--+.|+
T Consensus 325 ~~l~g~s~~~~~~~~~a~~~a----~~~~p---VLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elf 397 (639)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFP---ILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFL 397 (639)
T ss_pred HHCCCCCHHHHHHHHHHHHHH----CCCCC---EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHC
T ss_conf 544679999999999999996----88996---89889898109999999995577789981898789898467899873
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHC
Q ss_conf 47711203566774211322156410220214414989999999984045788799977830331559548512687640
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIE 727 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~ 727 (853)
|.-+| ...+|.+ .++..-..+.++||||+--.++++.-||++|++|.++-..|.+.---++-||.+||.
T Consensus 398 G~~~~---~~~~g~~-g~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~~------- 466 (639)
T PRK11388 398 GSDRT---DSENGRL-SKFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA------- 466 (639)
T ss_pred CCCCC---CCCCCCC-CHHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCH-------
T ss_conf 87767---6434668-624403698288467264999999999999865937856999466642799973645-------
Q ss_pred CHHHHHHHHHHHH-HHHCCHHHHCCCCC-EEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
Q ss_conf 3267999999999-86288577266681-586288998--9999999999999999998579899998899999997089
Q gi|254780877|r 728 DGDSVHDKVMGIV-RSAFKPEFLNRLDE-IILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGY 803 (853)
Q Consensus 728 ~~~~~~~~~~~~l-~~~f~peflnRid~-iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~ 803 (853)
...+.+ .+.|+.+|+-|+.. .|..-||-+ +|+..++...+.++..+. +..+.+++++...|.. |
T Consensus 467 -------~l~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~---~~~~~ls~~a~~~L~~--y 534 (639)
T PRK11388 467 -------DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDDDALARLVS--Y 534 (639)
T ss_pred -------HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHC--C
T ss_conf -------089998749854999987674410573323253439999999999999971---9999989999999972--8
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 82206215799999873
Q gi|254780877|r 804 DPSYGARPLKRVIQRYI 820 (853)
Q Consensus 804 ~~~~GaR~l~r~i~~~i 820 (853)
+=--.-|.|+.++++.+
T Consensus 535 ~WPGNvrEL~nvl~~a~ 551 (639)
T PRK11388 535 RWPGNDFELRSVIENLA 551 (639)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 99979999999999999
No 49
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.35 E-value=1.2e-11 Score=113.54 Aligned_cols=205 Identities=29% Similarity=0.433 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 12355477674594899999999998741012365665128987267861688999999987237765300224477403
Q gi|254780877|r 560 LRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME 639 (853)
Q Consensus 560 l~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e 639 (853)
..+...+.+.++|+++++..+..++... +| .||.||+|||||.+|+++|+.+. ..+.|+.+.....
T Consensus 16 ~~~~~~~~~~~~g~~~~~~~~l~a~~~~--------~~---vll~G~PG~gKT~la~~lA~~l~---~~~~~i~~t~~l~ 81 (329)
T COG0714 16 GKIRSELEKVVVGDEEVIELALLALLAG--------GH---VLLEGPPGVGKTLLARALARALG---LPFVRIQCTPDLL 81 (329)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHCC--------CC---EEEECCCCCCHHHHHHHHHHHHC---CCCEEEECCCCCC
T ss_conf 6666522565526699999999999859--------97---78779898777999999999838---9818995689988
Q ss_pred CCCCCHHHCCC--------CHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCC
Q ss_conf 45320130477--------1120356677421132215641022021441498999999998404578879997783033
Q gi|254780877|r 640 KHSVSRLIGSP--------PGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRN 711 (853)
Q Consensus 640 ~~~vs~LiGap--------pGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n 711 (853)
+.. ++|.. +++-=|-. |-|+.+++ +|+|+|||.+|.|++.+.||++|++++.|...-..+.+..
T Consensus 82 p~d---~~G~~~~~~~~~~~~~~~~~~-gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vt~~~~~~~~~~~ 153 (329)
T COG0714 82 PSD---LLGTYAYAALLLEPGEFRFVP-GPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred HHH---HCCHHHHHHHHCCCCEEEEEC-CCCCCCCC----EEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCC
T ss_conf 888---205688876642577189846-87334513----3899870345898899999999972689707966533799
Q ss_pred -CEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHH---------H----
Q ss_conf -15595485126876403267999999999862885772666815862889989999999999999---------9----
Q gi|254780877|r 712 -TLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGR---------V---- 777 (853)
Q Consensus 712 -~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~---------l---- 777 (853)
.++|.|+|=+-. +-....+..+++|+.-.+.+..........++...... +
T Consensus 154 ~f~viaT~Np~e~---------------~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~ 218 (329)
T COG0714 154 PFIVIATQNPGEY---------------EGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVL 218 (329)
T ss_pred CCEEEEECCCCCC---------------CCCCCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHC
T ss_conf 8789982686765---------------7887899888810388776489973889999987365644320234466542
Q ss_pred --HHHHH-HCCC-EEEECHHHHHHHHHC
Q ss_conf --99998-5798-999988999999970
Q gi|254780877|r 778 --LSLIK-ERNI-SMDFDDQVIDWLSCR 801 (853)
Q Consensus 778 --~~~l~-~~~i-~l~~~~~~~~~l~~~ 801 (853)
...++ ...+ ...+++++.+|+..-
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (329)
T COG0714 219 SDEELLRLQKEVKKVPVSDEVIDYIVTL 246 (329)
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8799998766524887619999999999
No 50
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.35 E-value=4.4e-10 Score=100.91 Aligned_cols=141 Identities=28% Similarity=0.422 Sum_probs=107.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77786689528874077799999998734899844457437887313542174542024545899999986079976999
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILF 276 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilf 276 (853)
+--..++|.|+||+|||.++..+|.. .+..++.++.+.++ .+|-||-|..++.+++.+... .+.|+|
T Consensus 164 ~pPkGvLLyGPPGtGKTllAkAvA~e----------~~~~fi~v~~s~l~--sk~vGesek~vr~lF~~Ar~~-aP~IiF 230 (390)
T PRK03992 164 EPPKGVLLYGPPGTGKTLLAKAVAHE----------TNATFIRVVGSELV--QKFIGEGARLVRELFELAREK-APSIIF 230 (390)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH----------HCCCEEEEEHHHHH--HCCCCHHHHHHHHHHHHHHHH-CCCEEE
T ss_conf 99972786898999789999999987----------48887996679975--245417999999999999970-990897
Q ss_pred ECCHHHHCCCCCCCC-CCC--HHHHHHHHH-------CCCCEEEEEEECHHHHHHHHHCCHHHHH--CCC-EEECCCCCH
Q ss_conf 636277302666554-335--888876531-------2466048997448999997300111320--231-111157776
Q gi|254780877|r 277 IDELHVLVGAGKTDG-AMD--ASNLLKPSL-------ARGELHCIGATTLDEYRKYIEKDPALAR--RFQ-SLLVGEPTV 343 (853)
Q Consensus 277 ide~h~~~gaG~~~g-~~D--aan~LKP~L-------arG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq-~i~V~Eps~ 343 (853)
|||+..|.+.-...| +.| +..++-..| .++.+.+||||---+ .=|+||-| ||+ .|.|.-|+.
T Consensus 231 iDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd-----~LDpAllRpGRFDr~I~iplPd~ 305 (390)
T PRK03992 231 IDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPD-----ILDPALLRPGRFDRIIEVPLPDE 305 (390)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCH-----HCCHHHHCCCCCCEEEEECCCCH
T ss_conf 1432566335677888620889999999999744877778827996069810-----05977754776523887089499
Q ss_pred HHHHHHHHHHHH
Q ss_conf 789999999789
Q gi|254780877|r 344 TDTISILRGLKE 355 (853)
Q Consensus 344 ~~t~~iL~gl~~ 355 (853)
++-..||+-...
T Consensus 306 ~~R~~Ilki~~~ 317 (390)
T PRK03992 306 EGRLEILKIHTR 317 (390)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999847
No 51
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=8.7e-11 Score=106.63 Aligned_cols=203 Identities=23% Similarity=0.324 Sum_probs=143.0
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCH------------HHCC
Q ss_conf 56998729853333357899999996336777866-8952887407779999999873489984------------4457
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPE------------SLKG 234 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~------------~l~~ 234 (853)
|-.+-|--.++-|||-+.-++.+...+...+=.+. ++.|++|||||+++--+|+-+.-..-|. ...+
T Consensus 6 LyrkyRP~~F~dvvGQ~~v~~~L~nai~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g 85 (563)
T PRK06674 6 LYRVFRPQKFEDVVGQEHVTKTLQNALLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNG 85 (563)
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 88763899765524809999999999984996503431289986899999999998579999998877668789998558
Q ss_pred --CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CC
Q ss_conf --437887313542174542024545899999986079---97699963627730266655433588887653124--66
Q gi|254780877|r 235 --KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GE 307 (853)
Q Consensus 235 --~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~ 307 (853)
.-++++|.++- +|= +.++.|.+.+.-++ .--|..|||.|++ +.+|+|-|--.|.. ..
T Consensus 86 ~~~DviEiDaasn------~gV--d~IR~i~~~v~~~P~~~~yKV~IIDeah~L--------t~~A~NALLKtLEEPP~~ 149 (563)
T PRK06674 86 SISDVLEIDAASN------NGV--DEIRDIRDKVKFAPSAVEYKVYIIDEVHML--------SIGAFNALLKTLEEPPGH 149 (563)
T ss_pred CCCCEEEECCCCC------CCH--HHHHHHHHHHCCCCCCCCEEEEEEECHHHC--------CHHHHHHHHHHHHCCCCC
T ss_conf 9987798525555------787--999999998264886787379998545637--------999999999986388756
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
..+|-+||.-+ |.. +.+-.|-|+....--+.++...-|+.+... -++.|+++||...++.|+-=+.|
T Consensus 150 viFILaTtep~--ki~---~TI~SRCQrf~F~ri~~~~i~~rL~~I~~~----E~i~~~~~aL~~Ia~~a~GsmRD---- 216 (563)
T PRK06674 150 VIFILATTEPH--KIP---PTIISRCQRFDFRRISVNDIVERLSTVVTN----EGTQVEDEALQIIARAADGGMRD---- 216 (563)
T ss_pred EEEEEECCCHH--HCC---HHHHHHHEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 49999659947--584---788733103127889999999999999998----49998788999999976997889----
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 77899999999987
Q gi|254780877|r 388 DKAIDLMDEASARV 401 (853)
Q Consensus 388 DKAIDllDeA~A~~ 401 (853)
|+.+||.+-|.-
T Consensus 217 --AlsiLdQ~~s~~ 228 (563)
T PRK06674 217 --ALSLLDQAISFS 228 (563)
T ss_pred --HHHHHHHHHHHC
T ss_conf --999999999715
No 52
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.32 E-value=1.5e-11 Score=112.74 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=138.5
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCC
Q ss_conf 69987298533333578999999963367778668952887407779999999873489984445743788731354217
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAG 248 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag 248 (853)
+++.|=.++|-++|-++-++.+...+...+-.|.++-|+||+|||+++..||..+..... ...+++++.+.
T Consensus 7 ~eKYRP~~l~di~g~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l~~~~~-----~~~~lelnasd---- 77 (318)
T PRK00440 7 VEKYRPRSLDEVVGQEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALARELYGEYW-----RENFLELNASD---- 77 (318)
T ss_pred HHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-----CCCEEEECCCC----
T ss_conf 460198989994196999999999998799866988895998899999999999769864-----34768951645----
Q ss_pred CCCCC--HHHHHHHHHHHHHHHCC-CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEEECHHHHHHHH
Q ss_conf 45420--24545899999986079-97699963627730266655433588887653124--660489974489999973
Q gi|254780877|r 249 AKFRG--EFEERLKSLLCEIRSED-GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GELHCIGATTLDEYRKYI 323 (853)
Q Consensus 249 ~~~rg--~~e~r~~~i~~~~~~~~-~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l~~IgaTT~~Eyrk~i 323 (853)
.|| ...++++.......... +--|++|||+|.+- .+|.|-|...+.. ...++|-+|+ .+.+.+
T Consensus 78 --~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~--------~~aq~aL~~~mE~~~~~~~fil~~n--~~~kii 145 (318)
T PRK00440 78 --ERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT--------SDAQQALRRTMEMYSQTTRFILSCN--YSSKII 145 (318)
T ss_pred --CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--------HHHHHHHHHHHHCCCCCCEEEEECC--CCCCCC
T ss_conf --6671789999999997267789973899986855322--------5567888764310566625886348--833376
Q ss_pred HCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 0011132023111115777678999999978986541496101589999986333202457674778999999999
Q gi|254780877|r 324 EKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASA 399 (853)
Q Consensus 324 EkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A 399 (853)
+++-.|.+.+....|+.++....|+.+..+ .++.++++|+...+..|+-= --+||.+|..++.
T Consensus 146 ---~~i~SRc~~i~f~~~~~~~i~~~L~~I~~~----E~i~~~~~~l~~i~~~s~gd------lR~ain~Lq~~~~ 208 (318)
T PRK00440 146 ---DPIQSRCAVFRFSPLPKEAVIERLRYIAKN----EGLEITDDALEAIYYVSEGD------MRKAINALQAAAA 208 (318)
T ss_pred ---CCHHHHHEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHH
T ss_conf ---155655101115789999999999999998----59998999999999864998------9999999999997
No 53
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=9.9e-11 Score=106.18 Aligned_cols=203 Identities=20% Similarity=0.199 Sum_probs=144.4
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCH------------HHCC
Q ss_conf 56998729853333357899999996336777866-8952887407779999999873489984------------4457
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPE------------SLKG 234 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~------------~l~~ 234 (853)
|..+-|--.++-|||-+.-++.+...+...+=.+. ++.|++|+|||+.+.-||+.+.-.+-|. ...+
T Consensus 6 la~KYRP~~F~dvvGQe~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g 85 (560)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDND 85 (560)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 77642898654403949999999999974997743663289987899999999999659999998888788788887459
Q ss_pred --CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CC
Q ss_conf --437887313542174542024545899999986079---97699963627730266655433588887653124--66
Q gi|254780877|r 235 --KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GE 307 (853)
Q Consensus 235 --~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~ 307 (853)
.-++++|.+ +-+|- +-++.+++.+.-++ +--|..|||+|+| +.+|+|-|--.|.. ..
T Consensus 86 ~~~DviEidaa------sn~~V--ddIR~l~e~v~~~P~~~~yKV~IIDEahmL--------t~~A~NALLKtLEEPP~~ 149 (560)
T PRK06647 86 SSLDVIEIDGA------SNTSV--QDVRQIKEEIMFPPASSRYRVYIIDEVHML--------SNSAFNALLKTIEEPPPY 149 (560)
T ss_pred CCCCEEEECCC------CCCCH--HHHHHHHHHHCCCCCCCCEEEEEECCHHHC--------CHHHHHHHHHHHHCCCCC
T ss_conf 99875764364------54888--999999998632876687069996465655--------999999999986348875
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
..+|-+||.- .|.. +..-.|-|...-..-+.++...-|+.+... -+|.|.++||...++.|.-=+.|
T Consensus 150 ~~FILaTte~--~KI~---~TI~SRCQ~f~Fk~i~~~~I~~~L~~I~~~----E~i~~e~~AL~lIa~~a~Gs~RD---- 216 (560)
T PRK06647 150 IVFIFATTEV--HKLP---ATIKSRCQHFNFRLLSLEKIYEMLKKVCLE----DDIKYEDEALKWIAYKSGGSVRD---- 216 (560)
T ss_pred EEEEEECCCH--HHCH---HHHHHHHEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 5999977994--7684---899965104105559999999999999986----79887999999999977895888----
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 77899999999987
Q gi|254780877|r 388 DKAIDLMDEASARV 401 (853)
Q Consensus 388 DKAIDllDeA~A~~ 401 (853)
|..+||.+.|.-
T Consensus 217 --alslldq~i~~~ 228 (560)
T PRK06647 217 --AYTLFDQIVSFS 228 (560)
T ss_pred --HHHHHHHHHHCC
T ss_conf --999999999607
No 54
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=9.2e-11 Score=106.43 Aligned_cols=203 Identities=21% Similarity=0.229 Sum_probs=145.5
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCC-CCHH------------H-
Q ss_conf 5699872985333335789999999633677786-68952887407779999999873489-9844------------4-
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGD-IPES------------L- 232 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~-vp~~------------l- 232 (853)
|..+.|=..++-|||-+.-++.+...+...+-.+ -++.|++|||||++..-||+.+.-.+ .++. .
T Consensus 7 larKYRP~~F~dvVGQ~~vv~~L~nai~~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~ 86 (462)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVTVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISS 86 (462)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 88763889876604909999999999984997623430389985999999999999679999888898876688899863
Q ss_pred -CCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CC-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--C
Q ss_conf -5743788731354217454202454589999998607--99-7699963627730266655433588887653124--6
Q gi|254780877|r 233 -KGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSE--DG-EIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--G 306 (853)
Q Consensus 233 -~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~--~~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G 306 (853)
...-|+++| +++-||= +.++.+++.+.-. .+ --|..|||.|+| +.+|.|-|--.|.. .
T Consensus 87 g~~~DViEiD------aAs~~gV--ddIRel~e~v~~~P~~~~yKVyIIDEvhmL--------s~~AfNALLKtLEEPP~ 150 (462)
T PRK06305 87 GTSLDVIEID------GASHRGI--EDIRQINETVLFTPSKSQYKIYIIDEVHML--------TKEAFNSLLKTLEEPPQ 150 (462)
T ss_pred CCCCCEEEEC------CCCCCCH--HHHHHHHHHHCCCCCCCCEEEEEEECHHHC--------CHHHHHHHHHHHHCCCC
T ss_conf 8999868643------5534466--899999977100886775059998152117--------99999999998618987
Q ss_pred CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 60489974489999973001113202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 307 ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 307 ~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
...+|=+||.-+ |.. +.+-.|-|+.....-+.++...-|+.+... -++.|.++||...++.|+-=+.|
T Consensus 151 ~v~FILaTTe~~--KIp---~TIlSRCQrf~F~~i~~~~I~~~L~~I~~~----E~i~~e~~AL~lIA~~a~GsmRD--- 218 (462)
T PRK06305 151 HVKFFLATTEIH--KIP---GTILSRCQKMHLKRIPEETIIDKLALIAQQ----DGIETSREALLPIARAAQGSLRD--- 218 (462)
T ss_pred CEEEEEEECCHH--HCC---HHHHHHHHEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 749999818814--285---478765402332579999999999999998----39985999999999985895878---
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 477899999999987
Q gi|254780877|r 387 PDKAIDLMDEASARV 401 (853)
Q Consensus 387 PDKAIDllDeA~A~~ 401 (853)
|+.+||.+.+.-
T Consensus 219 ---AlslLDQ~i~~~ 230 (462)
T PRK06305 219 ---AESLYDYVVGLF 230 (462)
T ss_pred ---HHHHHHHHHHHC
T ss_conf ---999999999847
No 55
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.31 E-value=2.8e-10 Score=102.49 Aligned_cols=222 Identities=18% Similarity=0.274 Sum_probs=161.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653002244774034532013
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L 646 (853)
-..++|+..++..+....++. ...+.|+ |..|-||+||.-+|+++-..=--....|+.+||+-..+...-|.|
T Consensus 203 F~~iig~S~~m~~v~~~a~r~----A~~d~pV---LI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseL 275 (513)
T PRK10820 203 FSQIVAVSPKMKHVVEQARKL----AMLSAPL---LITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESEL 275 (513)
T ss_pred HHHHEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 777510899999999999998----5989988---998989824999999999668878998268889989967899986
Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHH
Q ss_conf 04771120356677421132215641022021441498999999998404578879997783033155954851268764
Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLI 726 (853)
Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~ 726 (853)
+|..+ -+.-|.+- .--.+-++||||+-..++++.-||++|++|.+.--.|...---|+=||++||.
T Consensus 276 FG~a~----~~~~G~fe----~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~------ 341 (513)
T PRK10820 276 FGHAP----EGKKGFFE----QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK------ 341 (513)
T ss_pred CCCCC----CCCCCCEE----ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCH------
T ss_conf 38766----68897557----85898899978365999999999999868979965998535677899962653------
Q ss_pred CCHHHHHHHHHHHH-HHHCCHHHHCCCCC-EEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 03267999999999-86288577266681-586288998--999999999999999999857989999889999999708
Q gi|254780877|r 727 EDGDSVHDKVMGIV-RSAFKPEFLNRLDE-IILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRG 802 (853)
Q Consensus 727 ~~~~~~~~~~~~~l-~~~f~peflnRid~-iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 802 (853)
.+.+.+ .+.|+.+|.-|+.. .+..-||-+ +|+.-++...+.++..+.... ...+++++.+.|..
T Consensus 342 --------dL~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~--~~~ls~~a~~~L~~-- 409 (513)
T PRK10820 342 --------NLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP--RPKLSADLSTVLTR-- 409 (513)
T ss_pred --------HHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHH--
T ss_conf --------099998729850889998616725588834465569999999999999975999--89847999999970--
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9822062157999998733
Q gi|254780877|r 803 YDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 803 ~~~~~GaR~l~r~i~~~i~ 821 (853)
|+=--..|.|+.+|++.+.
T Consensus 410 y~WPGNVREL~n~iera~~ 428 (513)
T PRK10820 410 YGWPGNVRQLKNAIYRALT 428 (513)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 8999799999999999999
No 56
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.1e-10 Score=105.71 Aligned_cols=204 Identities=20% Similarity=0.271 Sum_probs=144.0
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCCH--HH-----------
Q ss_conf 35699872985333335789999999633677786-68952887407779999999873489984--44-----------
Q gi|254780877|r 167 DLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDIPE--SL----------- 232 (853)
Q Consensus 167 DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~vp~--~l----------- 232 (853)
.|.++.|-..++-|||-+.=++.+...+.+.+=.+ -++.|++|||||+++..+|..+.-.+.++ ..
T Consensus 5 alyrKYRPk~F~eIIGQe~iv~~L~nAI~~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~ 84 (613)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT 84 (613)
T ss_pred CHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 12450179976552382999999999998499762277558998488999999999966999999998888878999856
Q ss_pred -CCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--C
Q ss_conf -57437887313542174542024545899999986079---97699963627730266655433588887653124--6
Q gi|254780877|r 233 -KGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--G 306 (853)
Q Consensus 233 -~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G 306 (853)
...-++++|.++ .+| =+.++.+++.+.-.+ +--|..|||+|+| +..|+|-|--.|.. .
T Consensus 85 g~h~DviEIdaas------n~g--IDeIReLie~~~~~P~~gkyKV~IIDEah~L--------n~~AaNALLKtLEEPP~ 148 (613)
T PRK05896 85 NQSVDIVELDAAS------NNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHML--------STSAWNALLKTLEEPPK 148 (613)
T ss_pred CCCCCEEEEECCC------CCC--HHHHHHHHHHHCCCCCCCCCEEEEECCHHHC--------CHHHHHHHHHHCCCCCC
T ss_conf 9999868840655------578--8999999997085875799459998162217--------99999999985348987
Q ss_pred CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 60489974489999973001113202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 307 ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 307 ~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
...+|=+||.-+ +.. +..-.|-|+....-.+.++-..-|+.+... .++.|.++||...++.|+-=+.|
T Consensus 149 ~viFIL~Ttep~--KLL---pTIlSRCQrf~Fkri~~~~I~~~L~~I~~k----E~i~ie~~AL~~Ia~~adGs~RD--- 216 (613)
T PRK05896 149 HVVFIFATTEFQ--KIP---LTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGSLRD--- 216 (613)
T ss_pred CCEEEEEECCHH--HCC---HHHHHCCCCEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 837999828815--493---766403550017889989999999999997----39987899999999976884878---
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 477899999999987
Q gi|254780877|r 387 PDKAIDLMDEASARV 401 (853)
Q Consensus 387 PDKAIDllDeA~A~~ 401 (853)
|+.+||.+.+..
T Consensus 217 ---AlslLdQ~~~~~ 228 (613)
T PRK05896 217 ---GLSILDQLSTFK 228 (613)
T ss_pred ---HHHHHHHHHHHC
T ss_conf ---988999999835
No 57
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.31 E-value=5.1e-11 Score=108.51 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=38.5
Q ss_pred HCCHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHCCC-----------CHHHHHHHHHHHHH
Q ss_conf 7179999999999999998289----96338999999861887668999997399-----------98999999999997
Q gi|254780877|r 5 KYSDLMRNVLQSAQTYALAQGH----QNLVPEHVLHIFLEDEQGAVYSLIQCSGG-----------DIAQLKDYNQTVLS 69 (853)
Q Consensus 5 kFS~~a~~vL~~A~~~A~~~~H----~~Vt~EHLLlaLL~~~~s~i~~iL~~~gv-----------d~~~L~~~le~~L~ 69 (853)
-|+.....-.....=+|.+++- .+|+=+||+- +.+.+++++++-.+ --..+.+.+-+..+
T Consensus 3 lf~~~~~~~~~~~aPLA~rmRP~~Lde~vGQ~hllg-----~g~~Lrr~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~ 77 (726)
T PRK13341 3 LFAFHGEQQRRSEAPLADRLRPRTLEEFVGQDHILG-----EGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (726)
T ss_pred HHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCHHHCC-----CCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 155647765332698568629998777359575428-----982899999769998278889799999999999988748
Q ss_pred H-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4-5954789777706989999999999999971987
Q gi|254780877|r 70 K-IPKVTGGGAQVYLSQPLAVILSKSEEIAKKSGDS 104 (853)
Q Consensus 70 k-~~k~~~~~~~~~~S~~l~rvL~~A~~~A~~~g~~ 104 (853)
. +...+. -..-..+++++++.|...-..+|..
T Consensus 78 ~~F~~lsA---v~sgvkdlr~ii~~A~~~~~~~g~~ 110 (726)
T PRK13341 78 AHFSSLNA---VLAGVKDLRAEVDAAKERLERHGKR 110 (726)
T ss_pred CCEEEEEC---CCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 86799856---2037799999999999998745996
No 58
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.31 E-value=1.3e-07 Score=80.79 Aligned_cols=61 Identities=20% Similarity=0.395 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHH
Q ss_conf 69899999999999999719870259998766872775178-89997599989999999987
Q gi|254780877|r 83 LSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKL 143 (853)
Q Consensus 83 ~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~ 143 (853)
||+.++.+|..|...|..+++.+|+++|+|+|++.+..+.+ .+|..+|++...+.+.+...
T Consensus 1 ft~~a~~aL~~A~~~A~~~~h~~V~~eHlLlaLl~~~~~~~~~~L~~~gvd~~~l~~~l~~~ 62 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKE 62 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98899999999999999859990279999999973998479999998598999999999999
No 59
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=1.1e-07 Score=81.31 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH-HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCC
Q ss_conf 06989999999999999971987025999876687277517-889997599989999999987377887877754--676
Q gi|254780877|r 82 YLSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGI-GESLKKCGLKFSRLEESIKKLRKGRVADSVNAE--QGF 158 (853)
Q Consensus 82 ~~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~-a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e--~~~ 158 (853)
.+|+.++.+|..|...|..+++.+|+++|+|+||+.+.++. ..+|..+|++...+.+.+............... ...
T Consensus 5 k~t~~~~~al~~A~~~A~~~~h~~v~~eHll~all~~~~~~~~~~l~~~~~d~~~l~~~l~~~l~~~~~~~~~~~~~~~s 84 (857)
T PRK10865 5 RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPS 84 (857)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 53999999999999999985988435999999997699747999999869999999999999986278878988880878
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1078864435699872985333335789999999633677786689528874077799999998
Q gi|254780877|r 159 DALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASR 222 (853)
Q Consensus 159 ~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~ 222 (853)
+.+.+-. ++.....+..-+..|+-+ -++-.+..-.-...=+.-..|+.+..+.+.+.+.
T Consensus 85 ~~~~~~l-~~a~~~a~~~~~~~i~~~----~llla~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 143 (857)
T PRK10865 85 QDLVRVL-NLCDKLAQKRGDNFISSE----LFVLAALESRGTLADILKAAGATTANITQAIEQM 143 (857)
T ss_pred HHHHHHH-HHHHHHHHHCCCCCCHHH----HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 7999999-999999998599824299----9999997188779999998799999999999987
No 60
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-08 Score=89.33 Aligned_cols=222 Identities=21% Similarity=0.334 Sum_probs=161.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCH
Q ss_conf 77674594899999999998741012365665128987267861688999999987237765300224477403453201
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSR 645 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~ 645 (853)
....++|+..|+..+...+.+. .+.+-| .|..|.||+||--.|+++-+.=--....||.+||....+.--=|-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv----A~s~a~---VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESE 211 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV----APSDAS---VLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESE 211 (464)
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 5677520699999999999998----477997---899778987589999999860744589925633464898887777
Q ss_pred HHCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECC
Q ss_conf 3047711203566774211322156-------410220214414989999999984045788799977830331559548
Q gi|254780877|r 646 LIGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTS 718 (853)
Q Consensus 646 LiGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~Ts 718 (853)
|+| |++ |--|.+..++. -..+++|||+....+++.-||.+|.+|.++--.|++.-=-|+=||.+|
T Consensus 212 LFG-------hek-GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT 283 (464)
T COG2204 212 LFG-------HEK-GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT 283 (464)
T ss_pred HHC-------CCC-CCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEEC
T ss_conf 614-------565-676776434576157737965873231109999999999998707067358886000016999605
Q ss_pred CHHHHHHHCCHHHHHHHHHHH-HHHHCCHHHHCCCCCEEECC--CCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 512687640326799999999-98628857726668158628--899--8999999999999999999857989999889
Q gi|254780877|r 719 NLGAEYLIEDGDSVHDKVMGI-VRSAFKPEFLNRLDEIILFE--KLR--KEDMAKIVRIQLGRVLSLIKERNISMDFDDQ 793 (853)
Q Consensus 719 N~G~~~~~~~~~~~~~~~~~~-l~~~f~peflnRid~iv~F~--~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~ 793 (853)
|. .+.+. -.+.|+.++.-|+. +++.+ ||- .+|+.-++...+.++.++.. .-...++++
T Consensus 284 ~~--------------dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~--~~~~~~s~~ 346 (464)
T COG2204 284 NR--------------DLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELG--RPPKGFSPE 346 (464)
T ss_pred CC--------------CHHHHHHCCCCHHHHHHHHC-CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCHH
T ss_conf 77--------------89999881973788886523-31104876223620079999999999999809--998887999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999997089822062157999998733
Q gi|254780877|r 794 VIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 794 ~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
+...|.. |+=--..|.|+..+++.+.
T Consensus 347 a~~~L~~--y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 347 ALAALLA--YDWPGNVRELENVVERAVI 372 (464)
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHHH
T ss_conf 9999973--8998189999999999985
No 61
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.30 E-value=3e-11 Score=110.34 Aligned_cols=154 Identities=32% Similarity=0.471 Sum_probs=107.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCC-------HHHH
Q ss_conf 665128987267861688999999987237765300224477403453201304771120356677421-------1322
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALT-------EAVR 667 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lt-------e~vr 667 (853)
.||| |+-|.+|||||.|-.+||+.. ...++|||.||-++ .--|+|| |+--++||+.. -+.|
T Consensus 1543 ~kpi---lLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQTd---L~DLfGs---d~Pve~~Gef~w~dapfL~amr 1610 (4600)
T COG5271 1543 GKPI---LLEGSPGVGKTSLITALARKT---GKKLIRINLSEQTD---LCDLFGS---DLPVEEGGEFRWMDAPFLHAMR 1610 (4600)
T ss_pred CCCE---EECCCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCH---HHHHHCC---CCCCCCCCEEEECCCHHHHHHH
T ss_conf 8854---622799866789999999974---57247863201102---8987377---8875567616742468999853
Q ss_pred CCCCCEEEEHHHHHCCHHHHHHHHHHHHCCE-E-ECCCCCEEECC-CCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 1564102202144149899999999840457-8-87999778303-3155954851268764032679999999998628
Q gi|254780877|r 668 RHPYQVVLFDEIEKAHSDVHNILLQVLDDGR-L-TDSQGRTVDFR-NTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAF 744 (853)
Q Consensus 668 ~~P~sVil~DEiEKah~~v~~~llqild~G~-l-td~~G~~v~f~-n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f 744 (853)
. -.-||+||+.-|..+|+.=|=-.||.-+ . .--...++++- |..|+.+-|-- ...--++..
T Consensus 1611 ~--G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq--------------~qggGRKgL 1674 (4600)
T COG5271 1611 D--GGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQ--------------DQGGGRKGL 1674 (4600)
T ss_pred C--CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCH--------------HCCCCCCCC
T ss_conf 4--987996241032788998889988501442563113325216870554204811--------------027985668
Q ss_pred CHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 857726668158628899899999999999999
Q gi|254780877|r 745 KPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRV 777 (853)
Q Consensus 745 ~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l 777 (853)
|--|+||+. +|....|+.+++..|+..+.-.+
T Consensus 1675 PkSF~nRFs-vV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1675 PKSFLNRFS-VVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred CHHHHHHHH-EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 788862211-57750345300999998517765
No 62
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=1.9e-10 Score=103.95 Aligned_cols=204 Identities=19% Similarity=0.209 Sum_probs=144.5
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCH------------HHC
Q ss_conf 356998729853333357899999996336777866-8952887407779999999873489984------------445
Q gi|254780877|r 167 DLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPE------------SLK 233 (853)
Q Consensus 167 DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~------------~l~ 233 (853)
-|..+-|--.+|-|||-+.=++.+...+.+.+=.+. ++.|++|||||+.+.-||+.+.-.+-+. ...
T Consensus 4 aLyrkyRP~~F~dvvGQe~i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~ 83 (557)
T PRK07270 4 ALYRKYRSQTFDEMVGQEVVATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITN 83 (557)
T ss_pred HHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 76766089987671481999999999998599540442108998689999999999957999899998887779999875
Q ss_pred C--CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC--CC
Q ss_conf 7--437887313542174542024545899999986079---9769996362773026665543358888765312--46
Q gi|254780877|r 234 G--KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA--RG 306 (853)
Q Consensus 234 ~--~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La--rG 306 (853)
+ ..++++|.+ +-+|= +.++.+.+.+.-++ +--|..|||+|+| +.+|+|-|--.|. ..
T Consensus 84 g~~~DviEidaa------s~~gV--d~IRei~~~~~~~P~~~~yKV~IIDEah~L--------s~~A~NALLKtLEEPP~ 147 (557)
T PRK07270 84 GSLEDVIEIDAA------SNNGV--DEIRDIRDKSTYAPSRATYKVYIIDEVHML--------STGAFNALLKTLEEPTE 147 (557)
T ss_pred CCCCCEEEECCC------CCCCH--HHHHHHHHHHCCCCCCCCEEEEEECCHHHC--------CHHHHHHHHHHHHCCCC
T ss_conf 899974873477------76788--999999998423877788389997144534--------99999989998528998
Q ss_pred CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 60489974489999973001113202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 307 ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 307 ~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
...+|-+||.- .|.. +.+-.|-|+..-.--+.++...-|+.+... -++.|+++||...++.|.-=+.|
T Consensus 148 ~~vFIL~Ttep--~kIl---~TI~SRCQrf~F~~i~~~~i~~~L~~I~~~----E~i~~~~~aL~~Ia~~a~G~mRd--- 215 (557)
T PRK07270 148 NVVFILATTEL--HKIP---ATILSRVQRFEFKSIKTKAIREHLAWILDK----EGISFEVEALNLIARRAEGGMRD--- 215 (557)
T ss_pred CEEEEEEECCH--HHCC---HHHHHHHHHCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 76999984994--7592---888743000108889999999999999998----39986999999999977996878---
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 477899999999987
Q gi|254780877|r 387 PDKAIDLMDEASARV 401 (853)
Q Consensus 387 PDKAIDllDeA~A~~ 401 (853)
|+.+||.+-|.-
T Consensus 216 ---AlsiLdQ~~s~~ 227 (557)
T PRK07270 216 ---ALSILDQALSLS 227 (557)
T ss_pred ---HHHHHHHHHHCC
T ss_conf ---999999999717
No 63
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=1.5e-10 Score=104.71 Aligned_cols=204 Identities=24% Similarity=0.301 Sum_probs=145.5
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCHH------------HCC
Q ss_conf 56998729853333357899999996336777866-89528874077799999998734899844------------457
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPES------------LKG 234 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~~------------l~~ 234 (853)
|..+.|--.+|-|||-+.-++.+...+...+=.+. ++.|++|||||+++..||+.+.-.+-|.. ..+
T Consensus 4 LarKYRP~~F~evIGQe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g 83 (523)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEG 83 (523)
T ss_pred HHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 44420899654404949999999999985996715875789986889999999999759999998988878889998648
Q ss_pred C--EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CC
Q ss_conf 4--3788731354217454202454589999998607---997699963627730266655433588887653124--66
Q gi|254780877|r 235 K--RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GE 307 (853)
Q Consensus 235 ~--~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~ 307 (853)
. -|+++| +++.+| =+.++.+++.+.-. .+--|..|||+|+| +..|+|-|--.|.. ..
T Consensus 84 ~hpDViEiD------aasn~g--ID~IReLie~~~~~P~~gryKV~IIDEah~L--------t~~A~NALLKTLEEPP~~ 147 (523)
T PRK08451 84 RHIDIIEMD------AASNRG--IDDIRNLIEQTKYKPSMARFKIFIIDEVHML--------TKEAFNALLKTLEEPPSY 147 (523)
T ss_pred CCCCEEEEC------CCCCCC--HHHHHHHHHHHCCCCCCCCEEEEEEECCCCC--------CHHHHHHHHHHCCCCCCC
T ss_conf 999855105------533368--9999999997235886797279998260304--------899999999970389878
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
..+|-+||.- .|.. +..-.|-|.......+.++-..-|+.+... .++.|.++||...++.|+-=+.|
T Consensus 148 vvFILaTTep--~KLp---~TIlSRCQ~f~Fk~I~~~~I~~~L~~I~~~----E~i~~e~~AL~~IA~~a~GslRD---- 214 (523)
T PRK08451 148 VKFILATTDP--LKLP---ATILSRTQHFRFKQIPQNSIISHLKTILNK----EGVSYEPEALEILARSGSGSLRD---- 214 (523)
T ss_pred CEEEEECCCH--HHCH---HHHHHHHHCCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 3799975994--7684---888742031103379999999999999998----39987999999999977894868----
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 778999999999875
Q gi|254780877|r 388 DKAIDLMDEASARVR 402 (853)
Q Consensus 388 DKAIDllDeA~A~~~ 402 (853)
|+.+||.|-|.-.
T Consensus 215 --alslLdQ~i~~~~ 227 (523)
T PRK08451 215 --TLTLLDQAIIFCK 227 (523)
T ss_pred --HHHHHHHHHHHCC
T ss_conf --9879999998479
No 64
>CHL00176 ftsH cell division protein; Validated
Probab=99.28 E-value=2e-09 Score=95.51 Aligned_cols=160 Identities=24% Similarity=0.434 Sum_probs=115.7
Q ss_pred CCCCCCCHHH---HHHHHHHHH---------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 8533333578---999999963---------3677786689528874077799999998734899844457437887313
Q gi|254780877|r 176 KLDPVIGRDD---EMRRAIQVL---------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 176 kLDPVIGRe~---EI~~~~~iL---------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
.++-|.|-|+ |+++++.-| .-|--..++|+|+||+|||-++..+|- +..| -.|++.-+
T Consensus 175 tF~DVaG~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAg---Ea~v-------pF~~~sgs 244 (631)
T CHL00176 175 TFNDVAGVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG---EAEV-------PFFSISGS 244 (631)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHC---CCCC-------CEEEEEHH
T ss_conf 7532288589999999999983595887644996896589889899878899999856---5588-------46998837
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCC---CCCCCCCCCHHHHHHHHH-------CCCCEEEEEE
Q ss_conf 542174542024545899999986079976999636277302---666554335888876531-------2466048997
Q gi|254780877|r 244 ALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVG---AGKTDGAMDASNLLKPSL-------ARGELHCIGA 313 (853)
Q Consensus 244 ~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~g---aG~~~g~~Daan~LKP~L-------arG~l~~Iga 313 (853)
.++ ..|.|.=..|++.+.+.+++. .++|+|||||-.+=+ +|.+.|.-.-.+.|-..| .+..+=+|||
T Consensus 245 ~F~--e~~vGvga~rVR~LF~~Ar~~-aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaA 321 (631)
T CHL00176 245 EFV--EMFVGVGAARVRDLFKKAKEN-SPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAA 321 (631)
T ss_pred HHH--HHHCCHHHHHHHHHHHHHHHC-CCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 855--642155589999999999863-99699987101201147898889850899999999998428887888699982
Q ss_pred ECHHHHHHHHHCCHHHHH--CCC-EEECCCCCHHHHHHHHHHH
Q ss_conf 448999997300111320--231-1111577767899999997
Q gi|254780877|r 314 TTLDEYRKYIEKDPALAR--RFQ-SLLVGEPTVTDTISILRGL 353 (853)
Q Consensus 314 TT~~Eyrk~iEkD~Al~R--RFq-~i~V~Eps~~~t~~iL~gl 353 (853)
|---+- =|+||-| ||. .|.|.-|+.+.-..||+-.
T Consensus 322 TNrpd~-----LDpALlRPGRFDR~I~V~lPD~~gR~~IL~vh 359 (631)
T CHL00176 322 TNRIDI-----LDAALLRPGRFDRQVTVSLPDFEGRLDILKVH 359 (631)
T ss_pred CCCCCC-----CCHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 588554-----56866268877549982698989999999999
No 65
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=6.4e-07 Score=75.18 Aligned_cols=191 Identities=14% Similarity=0.208 Sum_probs=113.1
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 71799999999999999982899633899999986188766899999739998999999999997459547897-77706
Q gi|254780877|r 5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGG-AQVYL 83 (853)
Q Consensus 5 kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~-~~~~~ 83 (853)
.||+.++.+|..|...|..+++.+|+++|||++|+++.++.+..+|..+|++...++..+...+.......... ....-
T Consensus 79 ~~s~~~~~vL~~A~~~a~~~~~~~I~~ehLllall~e~~~~a~~iL~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (823)
T CHL00095 79 PFTPRAKRVLELSLEEARILGHNYIGTEHLLLGLIREGEGVAARVLENLNVDLPKVRSLIINLIGEIAEVILGGGTSREK 158 (823)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 88879999999999999982998043999999997089747999999879999999999999845456556788666656
Q ss_pred CHHHHHHHHHHHHHHHHCC-CCCCC----HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9899999999999999719-87025----999876687277517889997599989999999987377887877754676
Q gi|254780877|r 84 SQPLAVILSKSEEIAKKSG-DSFVT----AEKFLLAMVMETGGIGESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGF 158 (853)
Q Consensus 84 S~~l~rvL~~A~~~A~~~g-~~~I~----~ehLLlAIl~e~~s~a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~ 158 (853)
++.+++--..--..|..-. ++.|+ ...++--+.+....-.-+.-.-|+-...+.+.+.........+..- ..
T Consensus 159 ~~~L~ky~~dLT~~A~~GklDpvIGRd~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L--~~- 235 (823)
T CHL00095 159 TPTLEEFGNNLTKMAYEGNLDPVIGRDKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDIL--ED- 235 (823)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHH--CC-
T ss_conf 556999978889999838999875956999999999977324885023799987999999999976088998687--59-
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 107886443569987298533333-57899999996336777866895
Q gi|254780877|r 159 DALKKYCRDLTEEARNGKLDPVIG-RDDEMRRAIQVLSRRTKNNPVLI 205 (853)
Q Consensus 159 ~~L~ky~~DLTe~Ar~GkLDPVIG-Re~EI~~~~~iL~r~~k~n~~lv 205 (853)
-.-|.-|+..+..--+. -| =|+-+..++.-+. ..+ |+||.
T Consensus 236 --~~i~sLDl~~L~AGtky---RGeFEeRlk~il~ei~-~~~-~iILF 276 (823)
T CHL00095 236 --KLVLTLDIGLLLAGTKY---RGEFEERIKKIMDEIK-KAN-NIILV 276 (823)
T ss_pred --CCEEEEEHHHHHHCCCC---CHHHHHHHHHHHHHHH-HCC-CEEEE
T ss_conf --93688428877533422---2679999999999998-579-86999
No 66
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=2.3e-10 Score=103.12 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=147.4
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCH--H----------HCC
Q ss_conf 56998729853333357899999996336777866-8952887407779999999873489984--4----------457
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPE--S----------LKG 234 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~--~----------l~~ 234 (853)
|-.+-|--.++-|+|-+.-++.+...+...+-.++ ++-|++|||||+.+.-||.-+.--+-|. . -.|
T Consensus 6 LyrkyRP~~f~dvvgQ~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g 85 (541)
T PRK05563 6 LYREWRPRTFEDVVGQEHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEG 85 (541)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 88764899776624849999999999984993204530387995899999999999579998889857514889998568
Q ss_pred C--EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CC
Q ss_conf 4--37887313542174542024545899999986079---97699963627730266655433588887653124--66
Q gi|254780877|r 235 K--RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GE 307 (853)
Q Consensus 235 ~--~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~ 307 (853)
. -|+++|. ++-||= +-++.+++.+.-++ .--|..|||+|+| +.+|.|-|--.|.. ..
T Consensus 86 ~~~Dv~Eida------as~~gv--d~iR~~~~~~~~~p~~~~~Kv~IiDEvhml--------s~~a~nallKtlEePp~~ 149 (541)
T PRK05563 86 LLMDVIEIDA------ASNNGV--DDIREIIENVKYPPQEGKYKVYIMDEVHML--------SQGAVNAFLKTLEEPPSN 149 (541)
T ss_pred CCCCEEEECC------CCCCCH--HHHHHHHHHCEECCCCCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCCC
T ss_conf 9887366244------444788--999999976104876787059999772338--------999999999998548777
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
..+|=|||. ++|.. +.+-.|-|+......+.++-..-|+.+... -++.|+++||...++.|.==+.|
T Consensus 150 ~~Filatte--~~ki~---~tI~SRcq~f~f~~i~~~~i~~~L~~I~~~----E~i~~~~~al~lIa~~s~GsmRD---- 216 (541)
T PRK05563 150 VIFILATTD--PQKLP---ITILSRCQRFDFKRIKVKDIFKRLRKIVEE----QGIFADDKSLNLIARMSDGAMRD---- 216 (541)
T ss_pred CEEEEECCC--CCCCC---HHHHHHEEEEEEEECCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 569997698--44274---556742135775438999999999999998----49998789999999745997788----
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7789999999998
Q gi|254780877|r 388 DKAIDLMDEASAR 400 (853)
Q Consensus 388 DKAIDllDeA~A~ 400 (853)
|+.+||.+.|.
T Consensus 217 --AlslLdQ~is~ 227 (541)
T PRK05563 217 --ALSILDQAISM 227 (541)
T ss_pred --HHHHHHHHHHH
T ss_conf --99999999983
No 67
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.26 E-value=2.4e-10 Score=103.08 Aligned_cols=197 Identities=23% Similarity=0.338 Sum_probs=129.7
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 54776745948999999999987410123656651289872678616889999999872377653002244774034532
Q gi|254780877|r 564 TEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV 643 (853)
Q Consensus 564 ~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~v 643 (853)
-.--+..+||++.++.+.-.|.-++ ..+.|+.-.||.||+|.|||.||..+|+.|- .++-...-.-
T Consensus 21 P~~l~efiGQ~~i~~~L~v~i~Aak----~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~---~~~~~tsGP~------- 86 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK----KRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPA------- 86 (328)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---CCCEECCCCC-------
T ss_conf 8857663595999999999999999----6499988057658899889999999999868---8815624500-------
Q ss_pred CHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC--CCC---CEEECC---CCEEE
Q ss_conf 0130477112035667742113221564102202144149899999999840457887--999---778303---31559
Q gi|254780877|r 644 SRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTD--SQG---RTVDFR---NTLII 715 (853)
Q Consensus 644 s~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd--~~G---~~v~f~---n~iii 715 (853)
+-- || |=-+.||. -+|..|++.|||..-++.|-.+|+..|+|.++.= +.| |.+.+. =|+|=
T Consensus 87 ---lek-~~----DL~~iLt~---l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIG 155 (328)
T PRK00080 87 ---LEK-AG----DLAALLTN---LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred ---CCC-HH----HHHHHHHH---CCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEE
T ss_conf ---167-47----89999960---88787676506532488899885798775234578647865324555899834740
Q ss_pred ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 54851268764032679999999998628857726668158628899899999999999999999985798999988999
Q gi|254780877|r 716 MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853)
Q Consensus 716 ~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853)
.|+-.|. .+..|.+|+.-+.-|+.++.+++.+|+..-. .-..+.+++++.
T Consensus 156 ATTr~g~---------------------Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa---------~~l~i~i~~~~~ 205 (328)
T PRK00080 156 ATTRAGL---------------------LTSPLRDRFGIVQRLEFYTVEELEKIVKRSA---------RILGIEIDEEGA 205 (328)
T ss_pred CCCCCCC---------------------CCHHHHHHCCCEEEECCCCHHHHHHHHHHHH---------HHHCCCCCHHHH
T ss_conf 1367665---------------------7767897579336634589999999999999---------983988789999
Q ss_pred HHHHHCCC-CCCCCCHHHHHH
Q ss_conf 99997089-822062157999
Q gi|254780877|r 796 DWLSCRGY-DPSYGARPLKRV 815 (853)
Q Consensus 796 ~~l~~~~~-~~~~GaR~l~r~ 815 (853)
..|+.++- .|..--|=|+|+
T Consensus 206 ~eIA~rSRGTPRiAnrLLrRv 226 (328)
T PRK00080 206 LEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred HHHHHHCCCCCHHHHHHHHHH
T ss_conf 999986389839999999999
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.25 E-value=3e-11 Score=110.37 Aligned_cols=149 Identities=28% Similarity=0.388 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCC
Q ss_conf 94899999999998741012365665128987267861688999999987237765300224477403453201304771
Q gi|254780877|r 572 GQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPP 651 (853)
Q Consensus 572 gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGapp 651 (853)
||+.....+...+... |....||.||+|+|||.+|+++|+.+....-.++.++.+++......+...+..
T Consensus 2 ~~~~~~~~l~~~~~~~---------~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CCHHHHHHHHHHHHCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH-
T ss_conf 8579999999998187---------998089989999886599999999712137982785477704677775760577-
Q ss_pred HHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHH
Q ss_conf 12035667742113221564102202144149899999999840457887999778303315595485126876403267
Q gi|254780877|r 652 GYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDS 731 (853)
Q Consensus 652 GYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~ 731 (853)
..............+|+++|||+++.+...+.++++|+...-. .....++.+|++||-...
T Consensus 72 ------~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~vI~~tn~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------HHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCC-----CCCCCCEEEEEEECCCCC--------
T ss_conf ------8898999999769986982016655999999999999871575-----406788899995289988--------
Q ss_pred HHHHHHHHHHHHCCHHHHCCCCCEEECC
Q ss_conf 9999999998628857726668158628
Q gi|254780877|r 732 VHDKVMGIVRSAFKPEFLNRLDEIILFE 759 (853)
Q Consensus 732 ~~~~~~~~l~~~f~peflnRid~iv~F~ 759 (853)
..|.+.+.+|++..+.|.
T Consensus 133 ----------~~~~~~~~~R~~~~i~~~ 150 (151)
T cd00009 133 ----------GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ----------CCHHHHHHCCCCEEEECC
T ss_conf ----------683776425598698638
No 69
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=7.1e-10 Score=99.24 Aligned_cols=222 Identities=23% Similarity=0.351 Sum_probs=149.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCCCCHHHHCCC
Q ss_conf 554776745948999999999987410123656651289872678616889999999872377--653002244774034
Q gi|254780877|r 563 ETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD--ENSMIRIDMSEYMEK 640 (853)
Q Consensus 563 ~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~--~~~lir~dMsey~e~ 640 (853)
.......+||.+.+...+.+.++. +...+.|+ |..|+||+||+-.|..+. .+-.. +..+|.|||+.|++.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~----~ap~~~~v---Li~GetGtGKel~A~~iH-~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA----YAPSGLPV---LIIGETGTGKELFARLIH-ALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHH----HCCCCCCE---EEECCCCCCHHHHHHHHH-HHHHCCCCCCEEEEEHHHHCCC
T ss_conf 221566663568889999999986----18999847---986688753889999999-8612135898799777773767
Q ss_pred CCCCHHHCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC---CCCCEEECC
Q ss_conf 532013047711203566774211322156-------4102202144149899999999840457887---999778303
Q gi|254780877|r 641 HSVSRLIGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD---SQGRTVDFR 710 (853)
Q Consensus 641 ~~vs~LiGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd---~~G~~v~f~ 710 (853)
.--+.|+|--. |.+|.+-..+| -..+++|||--..|.++..||+++|+|.++- ...+.+|++
T Consensus 145 ~~~~eLFG~~k--------GaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 145 LQEAELFGHEK--------GAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred HHHHHHHCCCC--------CEEECCCCCCCCHHEECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCE
T ss_conf 77777732000--------0002566786764205279777656365379858999999987186576688888677740
Q ss_pred CCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHC-CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 3155954851268764032679999999998628857726-668158628899899999999999999999985798999
Q gi|254780877|r 711 NTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLN-RLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMD 789 (853)
Q Consensus 711 n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefln-Rid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 789 (853)
+|+-||. ... +.+..- ..|.- |+..+|-.-||... ...|..+.--=+.......++.+.
T Consensus 217 ---li~AT~~----------~l~----~~~~~g--~dl~~rl~~~~I~LPpLrER-~~Di~~L~e~Fl~~~~~~l~~~~~ 276 (403)
T COG1221 217 ---LICATTE----------DLE----EAVLAG--ADLTRRLNILTITLPPLRER-KEDILLLAEHFLKSEARRLGLPLS 276 (403)
T ss_pred ---EEECCCC----------CHH----HHHHHH--CCHHHHHCCCEECCCCHHHC-HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ---4513566----------879----998740--52556416754318972435-555999999999999997399988
Q ss_pred EC-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98-8999999970898220621579999987334
Q gi|254780877|r 790 FD-DQVIDWLSCRGYDPSYGARPLKRVIQRYIQN 822 (853)
Q Consensus 790 ~~-~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~ 822 (853)
.. +.+...+. .|+-.-..|.|+..|+..+..
T Consensus 277 ~~~~~a~~~L~--~y~~pGNirELkN~Ve~~~~~ 308 (403)
T COG1221 277 VDSPEALRALL--AYDWPGNIRELKNLVERAVAQ 308 (403)
T ss_pred CCCHHHHHHHH--HCCCCCCHHHHHHHHHHHHHH
T ss_conf 88899999998--488998399999999999997
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.1e-10 Score=103.54 Aligned_cols=125 Identities=22% Similarity=0.412 Sum_probs=60.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCC----CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 674594899999999998741012----3656651289872678616889999999872377653002244774034532
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGL----QDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV 643 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl----~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~v 643 (853)
..|+||+++++.+-++++..|+|+ ..+++-.-.|||+||.|+|||.+|+++|..|+-....-- .+.+. .+.
T Consensus 5 ~~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~--~cg~C---~~C 79 (395)
T PRK07940 5 DRLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVP--GCGEC---RAC 79 (395)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC--CCCCC---HHH
T ss_conf 1315929999999999983634344333346876603763689987889999999999669999999--99878---789
Q ss_pred C-HHHCCCCHHC---------CCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 0-1304771120---------3566774211322156----410220214414989999999984045
Q gi|254780877|r 644 S-RLIGSPPGYV---------GYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDG 697 (853)
Q Consensus 644 s-~LiGappGYv---------G~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G 697 (853)
- -.-|+-|-+. |-|+=-.|.+.+..+| |-|+++|+.|+..+.-.|.||..|+|-
T Consensus 80 ~~i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEEP 147 (395)
T PRK07940 80 RTVLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEEP 147 (395)
T ss_pred HHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC
T ss_conf 99876899871898268776889999999999852730379559998077874899999999852178
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=99.23 E-value=1e-10 Score=106.15 Aligned_cols=181 Identities=18% Similarity=0.307 Sum_probs=120.7
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHC-----CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 699872985333335789999999633-----677786689528874077799999998734899844457437887313
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLS-----RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~-----r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
+++-|=..++-++|-++-++.+..-+. +..+...+|.|+||||||+++..+|... |..+++++.+
T Consensus 5 veKYRPk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~----------g~~viElNAS 74 (403)
T PRK04195 5 VEKYRPKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNAS 74 (403)
T ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEECCC
T ss_conf 402189989998588999999999999987399657469988939987999999999984----------9985997710
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 54217454202454589999998607-----9976999636277302666554335888876531246604899744899
Q gi|254780877|r 244 ALIAGAKFRGEFEERLKSLLCEIRSE-----DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDE 318 (853)
Q Consensus 244 ~l~ag~~~rg~~e~r~~~i~~~~~~~-----~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~E 318 (853)
...... .++.++...... .+.-|+++||+|.+-|.+-.+|--..-+++|. ....+|.+++ +-
T Consensus 75 ----D~R~~~----~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~----s~~PiIli~N-d~ 141 (403)
T PRK04195 75 ----DQRTKD----VIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKK----AKNPIILTAN-DP 141 (403)
T ss_pred ----CCCCHH----HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC----CCCEEEEEEC-CC
T ss_conf ----114789----9999999876068877887349996343445724447999999999854----8870899826-84
Q ss_pred HHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9997300111320231111157776789999999789865414961015899999863332
Q gi|254780877|r 319 YRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNR 379 (853)
Q Consensus 319 yrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~r 379 (853)
|.+.+ ..|-.|-+.|....|+.++....|+-+... .|++++++||...+..|+-
T Consensus 142 ~~~~~---~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~----Egi~i~~~aL~~Ia~~s~G 195 (403)
T PRK04195 142 YDPSL---RPLRNACLMIEFKRLSKRSIVPVLKRICRK----EGIECEEEALREIAERSGG 195 (403)
T ss_pred CCCCH---HHHHHHHHHCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCC
T ss_conf 55671---779976612217994999999999999997----6999999999999998797
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.22 E-value=1.3e-07 Score=80.82 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH-HHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 6989999999999999971987025999876687277517-88999759998999999998737788
Q gi|254780877|r 83 LSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGI-GESLKKCGLKFSRLEESIKKLRKGRV 148 (853)
Q Consensus 83 ~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~-a~iL~~~gi~~~~l~e~i~~~~~~~~ 148 (853)
+|+.++.+|+.|...|..+++.+|+++|||+||+.+.++. ..+|.++|++...+.+.+.......+
T Consensus 1 Lt~~~~~aL~~A~~~A~~~~H~~I~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~ 67 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLP 67 (852)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 9889999999999999985998138999999998399747999999869999999999999996389
No 73
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.22 E-value=4.3e-08 Score=84.72 Aligned_cols=208 Identities=21% Similarity=0.305 Sum_probs=138.4
Q ss_pred CCCCCHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH---------
Q ss_conf 33333578999999963----36777866895288740777999999987348998444574378873135---------
Q gi|254780877|r 178 DPVIGRDDEMRRAIQVL----SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA--------- 244 (853)
Q Consensus 178 DPVIGRe~EI~~~~~iL----~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~--------- 244 (853)
|-+.|||+|++++...| ....-+|.++.|+||+|||+.|.-+...+.+.. .+..++.+|-..
T Consensus 30 ~~l~~Re~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~-----~~~~~vyINc~~~~t~~~i~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEEAA-----LKVVYVYINCQIDRTRYAILS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEECCCCCCHHHHHH
T ss_conf 989885999999999999997599998479988999989999999999999746-----896599996966898999999
Q ss_pred -H---HCCCC--CCCH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHH-H-HHCCCCEEEEEEEC
Q ss_conf -4---21745--4202-4545899999986079976999636277302666554335888876-5-31246604899744
Q gi|254780877|r 245 -L---IAGAK--FRGE-FEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLK-P-SLARGELHCIGATT 315 (853)
Q Consensus 245 -l---~ag~~--~rg~-~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LK-P-~LarG~l~~IgaTT 315 (853)
+ +-|.+ .+|- +.+-+..+.+.+....+.+|+.+||+..|+. ..|.--.=+++. | .+..-.+-+||.+.
T Consensus 105 ~i~~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~---~~~~~vLY~L~r~~~~~~~~~~~vI~IsN 181 (394)
T PRK00411 105 EIARSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVE---KEGNDVLYSLLRAHEEYPGARIGVIGISS 181 (394)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CCCCHHHHHHHHCCCCCCCCCEEEEEEEC
T ss_conf 999995699898778789999999999861669758999965540203---66508999998540226887389999976
Q ss_pred HHHHHHHHHCCHHHHHCC--CEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 899999730011132023--111115777678999999978986541496101589999986333202457674778999
Q gi|254780877|r 316 LDEYRKYIEKDPALARRF--QSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDL 393 (853)
Q Consensus 316 ~~Eyrk~iEkD~Al~RRF--q~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDl 393 (853)
.-.+...+ |+.+..|| +.|.-.+=+.++...||+.-.. +.|+.=.++++||..|+.++.+==.| --+|||+
T Consensus 182 ~~~~~~~L--dprv~S~l~~~~i~F~PY~~~qL~~IL~~R~~--~af~~gv~~~~~i~~~A~~~a~~~GD---aR~Aldl 254 (394)
T PRK00411 182 DLTFLYIL--DPRVKSVFGPEEIVFPPYTADEIFDILKDRVE--EGFYPGVVSDEVLELIADLTGREHGD---ARVAIDL 254 (394)
T ss_pred CCCHHHHH--HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHHCCCC---HHHHHHH
T ss_conf 87177664--07775027862898589998999999999998--41455678978999999998550475---8999999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780877|r 394 MDEASAR 400 (853)
Q Consensus 394 lDeA~A~ 400 (853)
+-.|+-.
T Consensus 255 lr~A~e~ 261 (394)
T PRK00411 255 LRRAGEI 261 (394)
T ss_pred HHHHHHH
T ss_conf 9999999
No 74
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.1e-10 Score=105.74 Aligned_cols=185 Identities=13% Similarity=0.261 Sum_probs=117.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHH
Q ss_conf 5333335789999999633677786-689528874077799999998734899844457437887313542174542024
Q gi|254780877|r 177 LDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEF 255 (853)
Q Consensus 177 LDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~ 255 (853)
++-|||-+.=++.+..-+...+=++ -++.|++|||||+.+..+|+.+....-...-.+ ++.++.. .+.+. |
T Consensus 3 f~~iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D--~~~~~~~---~~~~I-~-- 74 (313)
T PRK05564 3 FRTIIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVD--IIEYKPI---NKKSI-G-- 74 (313)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC--EEEEECC---CCCCC-C--
T ss_conf 32326829999999999987998750432799985099999999999828997788986--5886332---25699-9--
Q ss_pred HHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEEECHHHHHHHHHCCHHHH
Q ss_conf 54589999998607---997699963627730266655433588887653124--6604899744899999730011132
Q gi|254780877|r 256 EERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GELHCIGATTLDEYRKYIEKDPALA 330 (853)
Q Consensus 256 e~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l~~IgaTT~~Eyrk~iEkD~Al~ 330 (853)
=+.++.+++.+... .+.-|.+||+.|++ +..|+|-|-=.|.. +..-+|=+||.. .+-. +-+-
T Consensus 75 vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m--------~~~AaNALLKtLEEPP~~t~fIL~t~~~--~~lL---pTI~ 141 (313)
T PRK05564 75 VDDIRNIIEEVNKKPYEGDKKVIIIYKSEKM--------TEQAQNAFLKTIEEPPKGVFIILLCENL--EQIL---DTIK 141 (313)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCHHHH--------CHHHHHHHHHCCCCCCCCEEEEEEECCH--HHCC---CHHH
T ss_conf 8999999999840862589569998077775--------8999999845503689985899864983--5475---7787
Q ss_pred HCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 023111115777678999999978986541496101589999986333202457674778999999
Q gi|254780877|r 331 RRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 (853)
Q Consensus 331 RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDe 396 (853)
.|-|.+.+..++.++....|. +.+++ ++.++...++.+|+- .|.+|.+++..
T Consensus 142 SRCQ~~~f~~l~~~~i~~~L~------~~~~~--~~~~~~~~~~~~s~G------~~~~a~~~~~~ 193 (313)
T PRK05564 142 SRCQIYKLNRLSKEDIEKFIS------YKYND--IDEENKNSAIAFSDG------IPGKVEKFIED 193 (313)
T ss_pred CCCEEEECCCCCHHHHHHHHH------HHCCC--CCHHHHHHHHHHCCC------CHHHHHHHHHH
T ss_conf 065356689989999999999------86258--999999999998299------87999998405
No 75
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.22 E-value=1.9e-10 Score=103.84 Aligned_cols=162 Identities=20% Similarity=0.357 Sum_probs=118.8
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCC
Q ss_conf 45948999999999987410123656651289872678616889999999872377653002244774034532013047
Q gi|254780877|r 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGS 649 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGa 649 (853)
+||+..++..+.+.+.+. ...+.|+ |..|++|+||+.+|+++-+.=.-...+++++||+.+.+..--+.|+|.
T Consensus 1 lIG~S~~m~~l~~~i~~~----a~~~~pV---LI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~ 73 (168)
T pfam00158 1 LIGESPAMQEVLELAKRV----APTDATV---LITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGH 73 (168)
T ss_pred CEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 973899999999999999----5889988---998999888899999999852435688312567899877999987587
Q ss_pred CCH-HCCCC--CCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHH
Q ss_conf 711-20356--677421132215641022021441498999999998404578879997783033155954851268764
Q gi|254780877|r 650 PPG-YVGYE--EGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLI 726 (853)
Q Consensus 650 ppG-YvG~~--~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~ 726 (853)
.+| |-|-. .-|.|. +--.+.++||||+...++++.-||+++++|.++--.+..---.|+=||.||+.
T Consensus 74 ~~g~f~ga~~~~~G~le----~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~------ 143 (168)
T pfam00158 74 EKGAFTGAVSDRKGLFE----LADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNR------ 143 (168)
T ss_pred CCCCCCCCCCCCCCCEE----ECCCCEEECCCHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCC------
T ss_conf 66766898757899642----26998788024413999999999999857969977998458885499996598------
Q ss_pred CCHHHHHHHHHHH-HHHHCCHHHHCCCCCEEE
Q ss_conf 0326799999999-986288577266681586
Q gi|254780877|r 727 EDGDSVHDKVMGI-VRSAFKPEFLNRLDEIIL 757 (853)
Q Consensus 727 ~~~~~~~~~~~~~-l~~~f~peflnRid~iv~ 757 (853)
.+.+. -+..|+++|+-|+. ++.
T Consensus 144 --------~L~~~v~~G~Fr~DLyyrLn-v~~ 166 (168)
T pfam00158 144 --------DLEEAVAEGRFREDLYYRLN-VVP 166 (168)
T ss_pred --------CHHHHHHCCCCHHHHHHHHC-EEE
T ss_conf --------89999883996399888865-232
No 76
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.22 E-value=4.4e-09 Score=92.77 Aligned_cols=159 Identities=25% Similarity=0.437 Sum_probs=117.0
Q ss_pred CCCCCCCHHHHH---HHHHHHH---------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 853333357899---9999963---------3677786689528874077799999998734899844457437887313
Q gi|254780877|r 176 KLDPVIGRDDEM---RRAIQVL---------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 176 kLDPVIGRe~EI---~~~~~iL---------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
.++-|.|-|+.- +++++-| .-|--..++|+|+||+|||-++..+|- +..| -+|++.-+
T Consensus 150 tF~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAg---Ea~v-------pF~~~sgs 219 (644)
T PRK10733 150 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG---EAKV-------PFFTISGS 219 (644)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---CCCC-------EEEEEEHH
T ss_conf 7104089789999999999981297999974997998517779899877899999864---5598-------08997847
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCC--CCCCC-HHHHHHHHH-------CCCCEEEEEE
Q ss_conf 5421745420245458999999860799769996362773026665--54335-888876531-------2466048997
Q gi|254780877|r 244 ALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKT--DGAMD-ASNLLKPSL-------ARGELHCIGA 313 (853)
Q Consensus 244 ~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~--~g~~D-aan~LKP~L-------arG~l~~Iga 313 (853)
.++ .+|.|.=+.|++.+...+++. .++|+|||||..+-+.-++ .|+-| -.+.|-+.| .+..+-+|||
T Consensus 220 ef~--e~~vGvga~rVR~lF~~Ar~~-aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaA 296 (644)
T PRK10733 220 DFV--EMFVGVGASRVRDMFEQAKKA-APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred HHH--HEEEECCHHHHHHHHHHHHHC-CCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 730--222530689999999999966-99799995322036667898889832888789999999548888787699962
Q ss_pred ECHHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHHHHHHHH
Q ss_conf 448999997300111320--2311-11157776789999999
Q gi|254780877|r 314 TTLDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDTISILRG 352 (853)
Q Consensus 314 TT~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~g 352 (853)
|---+ -=|+||-| ||.+ |.|.-|+.+.-.+||+-
T Consensus 297 TNrpd-----~LD~ALlRPGRFDr~I~V~lPd~~~R~~ILkv 333 (644)
T PRK10733 297 TNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKV 333 (644)
T ss_pred CCCCC-----CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 69975-----54777716888655999779898899999999
No 77
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=8.2e-10 Score=98.69 Aligned_cols=203 Identities=22% Similarity=0.273 Sum_probs=142.8
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE-ECCCCCCHHHHHHHHHHHHHCCCCCHH----------H-CCC
Q ss_conf 5699872985333335789999999633677786689-528874077799999998734899844----------4-574
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVL-IGDPGVGKTAIIEGLASRIINGDIPES----------L-KGK 235 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~l-vGe~GvGKtaive~la~~i~~~~vp~~----------l-~~~ 235 (853)
|..+.|-..++-|||-+.-++.+...+.+.+-..+.| .|+.|||||+++.-+|..+.-..-++. . ...
T Consensus 8 L~RKYRPk~F~EVIGQe~Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~~s~ 87 (718)
T PRK07133 8 LYRKYRPKKFDEIKGQDHIIETLKNIIKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFNNNL 87 (718)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 99872899754422859999999999974997505862389986889999999999679999999997702143047898
Q ss_pred EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEE
Q ss_conf 37887313542174542024545899999986079--9-7699963627730266655433588887653124--66048
Q gi|254780877|r 236 RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GELHC 310 (853)
Q Consensus 236 ~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l~~ 310 (853)
-++++|. ++-+|= +.++.+++.+.-.+ | --|.-|||+|+|- ..|.|-|--.|.. ....+
T Consensus 88 DViEIDA------ASn~gV--DdIReLie~v~y~P~~gkYKVyIIDEvHMLS--------~~AfNALLKtLEEPP~hvvF 151 (718)
T PRK07133 88 DIIEMDA------ASNNGV--DEIRELRENVKNLPQISKYKIYIIDEVHMLS--------KSAFNALLKTLEEPPKHVIF 151 (718)
T ss_pred CEEEECC------CCCCCH--HHHHHHHHHHCCCCCCCCEEEEEEECCCCCC--------HHHHHHHHHHHCCCCCCCEE
T ss_conf 7377545------566888--9999999982558877872499996620079--------99999999850279878279
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA 390 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA 390 (853)
|-|||.-+ |.- +..-.|-|+....-.+.++...-|+.+... .++.|.++||...++.|.-=+.| |
T Consensus 152 ILaTTep~--KIP---~TIlSRCQrFdFkrI~~~~I~~~L~~I~~k----E~I~~e~eAL~lIA~~a~GSmRD------A 216 (718)
T PRK07133 152 ILATTDVQ--KIP---LTILSRVQRFNFRRISEDVIVHQLENILEK----EKIKYEKNALKLIASLASGSLRD------A 216 (718)
T ss_pred EEEECCHH--HCC---HHHHHCCEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH------H
T ss_conf 99708825--484---877412203358889999999999999998----59977899999999976884888------9
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999987
Q gi|254780877|r 391 IDLMDEASARV 401 (853)
Q Consensus 391 IDllDeA~A~~ 401 (853)
+.+||.+.+.-
T Consensus 217 lSlLDQv~~f~ 227 (718)
T PRK07133 217 LSIADQVSIFG 227 (718)
T ss_pred HHHHHHHHHHC
T ss_conf 87999999854
No 78
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.21 E-value=3.7e-10 Score=101.51 Aligned_cols=206 Identities=28% Similarity=0.490 Sum_probs=145.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCHHH--H
Q ss_conf 76745948999999999987410123656651289872678616889999999872-------37765300224477--4
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL-------FDDENSMIRIDMSE--Y 637 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~l-------f~~~~~lir~dMse--y 637 (853)
-+.||||++-|+++ ||-|.-|| |.-+.++ ||+|||||--|+..=++= |+++-+|+=+|=.- |
T Consensus 64 F~EIiGQe~GI~AL-------KAALCGPN-PQHVIiY-GPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~RF 134 (532)
T TIGR02902 64 FDEIIGQEEGIKAL-------KAALCGPN-PQHVIIY-GPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTARF 134 (532)
T ss_pred CCCCCCCHHHHHHH-------HHHCCCCC-CCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 33256735568999-------98606868-9638987-886961789999999986508753789886689850510360
Q ss_pred CCCCCCCHHHCC--CCHHCCCCCCCCC---------CHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCE
Q ss_conf 034532013047--7112035667742---------11322156410220214414989999999984045788799977
Q gi|254780877|r 638 MEKHSVSRLIGS--PPGYVGYEEGGAL---------TEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRT 706 (853)
Q Consensus 638 ~e~~~vs~LiGa--ppGYvG~~~gg~L---------te~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~ 706 (853)
=|+-=+-=|||| -|=|=|= |-| ..||-+---.|+++|||==-||=-+|-||-||+|= +
T Consensus 135 DERGIADPLIGSVHDPIYQGA---GplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDR--------K 203 (532)
T TIGR02902 135 DERGIADPLIGSVHDPIYQGA---GPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDR--------K 203 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC--------C
T ss_conf 214666656776158533376---54578855758777632025865512124665824353141133022--------2
Q ss_pred EECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHH-----------------CCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 8303315595485126876403267999999999862-----------------88577266681586288998999999
Q gi|254780877|r 707 VDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSA-----------------FKPEFLNRLDEIILFEKLRKEDMAKI 769 (853)
Q Consensus 707 v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~-----------------f~peflnRid~iv~F~~l~~~~~~~i 769 (853)
|=|-.+.. ..+..++-+.+.+.-.+- .+|.+..|.=| |.|++|..++++.|
T Consensus 204 VFLdSAYY-----------~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~E-IFFR~L~~EEi~~i 271 (532)
T TIGR02902 204 VFLDSAYY-----------SSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE-IFFRPLLKEEIKEI 271 (532)
T ss_pred CHHHCCCC-----------CCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEE-EEECCCCHHHHHHH
T ss_conf 00001235-----------8777865427899720678734012133369877678346505226-77168887899999
Q ss_pred HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999857989999889999999708982206215799999
Q gi|254780877|r 770 VRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817 (853)
Q Consensus 770 ~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~ 817 (853)
+++-. .+|.+.+++++.+.|..+. ..| |..-..||
T Consensus 272 Ak~Aa---------eKIg~~l~~~Al~~I~~Ya---~nG-REAvN~~Q 306 (532)
T TIGR02902 272 AKNAA---------EKIGLNLEKEALDLIAKYA---SNG-REAVNLVQ 306 (532)
T ss_pred HHHHH---------HHCCCCCCHHHHHHHHHHH---CCC-CHHHHHHH
T ss_conf 87656---------5304654754799999874---054-06778999
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=6.8e-10 Score=99.37 Aligned_cols=203 Identities=20% Similarity=0.184 Sum_probs=134.2
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHCCCCCH-----------HH-C-
Q ss_conf 569987298533333578999999963367778-668952887407779999999873489984-----------44-5-
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKN-NPVLIGDPGVGKTAIIEGLASRIINGDIPE-----------SL-K- 233 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~-n~~lvGe~GvGKtaive~la~~i~~~~vp~-----------~l-~- 233 (853)
|-.+.|-..++-|||-+.-++.+..-+...+-+ --|+.|+-|||||++..-||+.+.-.+-|. .+ .
T Consensus 5 LyrkyRP~~F~eviGQe~v~~~L~~Ai~~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~g 84 (775)
T PRK07764 5 LYRRYRPATFAEVVGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAPG 84 (775)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 66550788766622859999999999981997633762378887888999999999668999998988887637888638
Q ss_pred ---CCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--
Q ss_conf ---7437887313542174542024545899999986079---97699963627730266655433588887653124--
Q gi|254780877|r 234 ---GKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-- 305 (853)
Q Consensus 234 ---~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-- 305 (853)
+.-|+++| +++++|= +.++.|++.+.-.+ .--|..|||.|+|- -.+.|-|--.|..
T Consensus 85 ~~~~~DviEiD------AAS~~gV--ddiReL~e~~~y~P~~~ryKVyIIDEaHmls--------~~afNALLKtLEEPP 148 (775)
T PRK07764 85 GPGSLDVVEID------AASHGGV--DDARELRERAFFAPAQSRYRIFIIDEAHMVT--------TAGFNALLKIVEEPP 148 (775)
T ss_pred CCCCCCEEEEC------CCCCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHHC--------HHHHHHHHHHHCCCC
T ss_conf 98888668731------5655688--9999999854768767863599985354407--------999999988622786
Q ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 66048997448999997300111320231111157776789999999789865414961015899999863332024576
Q gi|254780877|r 306 GELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRF 385 (853)
Q Consensus 306 G~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~ 385 (853)
..+.+|=+||.- .|.. +-+-.|-|.....--+.++...-|..+.. ..+|.|.+++|...++.+.--+.|
T Consensus 149 ~hvvFIlaTTep--~kip---~TI~SRcq~f~Fr~i~~~~~~~~l~~i~~----~E~i~~~~~al~li~r~~~Gs~RD-- 217 (775)
T PRK07764 149 EHLIFIFATTEP--EKVI---GTIRSRTHHYPFRLVPPGTMRPYLERICA----QEGVVVDDAVLPLVIRAGGGSPRD-- 217 (775)
T ss_pred CCEEEEEECCCH--HHCC---HHHHHHCCCCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH--
T ss_conf 462799954873--5471---67764102345266999999999999999----839987989999999982896676--
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 7477899999999987
Q gi|254780877|r 386 LPDKAIDLMDEASARV 401 (853)
Q Consensus 386 lPDKAIDllDeA~A~~ 401 (853)
|+.|||.+.|..
T Consensus 218 ----alS~ldQl~a~~ 229 (775)
T PRK07764 218 ----TLSVLDQLLAGA 229 (775)
T ss_pred ----HHHHHHHHHHCC
T ss_conf ----899999998404
No 80
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.19 E-value=9.3e-11 Score=106.39 Aligned_cols=108 Identities=26% Similarity=0.372 Sum_probs=80.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCC--CCEEEEHH
Q ss_conf 9872678616889999999872377653002244774034532013047711203566774211322156--41022021
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHP--YQVVLFDE 678 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P--~sVil~DE 678 (853)
.|+.||+|||||.+|+++|+.+ ...++|+++|+-.+ .+-|+|++- ...+.| ... .+.-| -+|+++||
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~---~~~~~~i~~~~~~~---~~Dl~G~~~--~~~~~~-~~~--~~~G~l~~~vl~lDE 70 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSL---GLDFRRIQFTPDLL---PSDITGTEV--YDQKTR-EFE--FRPGPIFANVLLADE 70 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCC---CCCCCCCEE--ECCCCC-EEE--EECCCCCCCCEEEEH
T ss_conf 8789899876999999999995---99816888337767---000368454--237874-089--845731037056401
Q ss_pred HHHCCHHHHHHHHHHHHCCEEECCCCCEEECC-CCEEEECCCH
Q ss_conf 44149899999999840457887999778303-3155954851
Q gi|254780877|r 679 IEKAHSDVHNILLQVLDDGRLTDSQGRTVDFR-NTLIIMTSNL 720 (853)
Q Consensus 679 iEKah~~v~~~llqild~G~ltd~~G~~v~f~-n~iii~TsN~ 720 (853)
|..|+|+|++.||+++++++++- .|.++.+- ++.+|.|+|=
T Consensus 71 in~a~~~v~~~Ll~~l~er~v~~-~g~~~~~p~~f~viAt~NP 112 (131)
T pfam07726 71 INRAPPKTQSALLEAMQERQVTI-GGETHPLPEPFFVLATQNP 112 (131)
T ss_pred HHCCCHHHHHHHHHHHHCEEEEE-CCEEEECCCCEEEEECCCC
T ss_conf 20399899999997632649977-9988527998499971698
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=2.3e-10 Score=103.15 Aligned_cols=166 Identities=20% Similarity=0.390 Sum_probs=109.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHCCCCCCCH
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653002-24477403453201
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIR-IDMSEYMEKHSVSR 645 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir-~dMsey~e~~~vs~ 645 (853)
..++|||++++..+.+++...|. | -.+||.||.|||||.+|..+|..|+.....--. -...+-...+.+.+
T Consensus 22 ~~~liGq~~~~~~L~~a~~~gRl-------~-HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r 93 (352)
T PRK09112 22 NNRLFGHEEARAFLAQAYREGRL-------H-HALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWR 93 (352)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 64627869999999999984996-------5-246535899808999999999998669986668655678887877899
Q ss_pred HH--CCCCHHCC----CCCC-C-----CCCHHHH-------CCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECC
Q ss_conf 30--47711203----5667-7-----4211322-------156----41022021441498999999998404578879
Q gi|254780877|r 646 LI--GSPPGYVG----YEEG-G-----ALTEAVR-------RHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDS 702 (853)
Q Consensus 646 Li--GappGYvG----~~~g-g-----~Lte~vr-------~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~ 702 (853)
.+ |+.|+.+- +++. | .-.+.|| ..| |-|+++||.|+-+.+-+|.||.+|+|=
T Consensus 94 ~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEP----- 168 (352)
T PRK09112 94 QIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP----- 168 (352)
T ss_pred HHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-----
T ss_conf 997489999565534322021454335777999999998454886688069998187874699999999985348-----
Q ss_pred CCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 9977830331559548512687640326799999999986288577266681586288998999999999
Q gi|254780877|r 703 QGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRI 772 (853)
Q Consensus 703 ~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~ 772 (853)
-.||+||+.||--. ...|-...|. ..+.|+||+.+++.+.+..
T Consensus 169 ------p~~~~fiLit~~~~--------------------~ll~TI~SRC-q~~~f~pL~~~di~~~L~~ 211 (352)
T PRK09112 169 ------PARALFILISHSSG--------------------RLLPTIRSRC-QPISLKPLDDDELKKALSH 211 (352)
T ss_pred ------CCCEEEEEEECCHH--------------------HCHHHHHHHC-CCCCCCCCCHHHHHHHHHH
T ss_conf ------98748998869977--------------------7768999743-3214889398999999998
No 82
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.9e-10 Score=103.85 Aligned_cols=188 Identities=22% Similarity=0.359 Sum_probs=119.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
..|+||++-+.. -..+++.- . ..-+.|+.|-||+|||||.+|+.+|... ..++..|+-.-. ++..+-
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v---~--~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~----gvkdlr 90 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAV---E--AGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS----GVKDLR 90 (436)
T ss_pred HHHCCHHHHHCC-CCHHHHHH---H--CCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCC----CHHHHH
T ss_conf 785571866189-94389999---6--4998605777899988889999998761---776699515234----679999
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 47711203566774211322156----41022021441498999999998404578879997783033155954851268
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
. . .|.-++.- -.|+++|||..-...-+++||-.+++|.++ +|=.||
T Consensus 91 ~------------i-~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii------------lIGATT----- 140 (436)
T COG2256 91 E------------I-IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII------------LIGATT----- 140 (436)
T ss_pred H------------H-HHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEEE------------EEECCC-----
T ss_conf 9------------9-999999872588349987225333744565510332488689------------996267-----
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
Q ss_conf 76403267999999999862885772666815862889989999999999999999998579899998899999997089
Q gi|254780877|r 724 YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGY 803 (853)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~ 803 (853)
+++.- ...|.++.|. .|+.|.||+.+++.+++..-+......+. +..+.++++++++|+..+
T Consensus 141 ---ENPsF-----------~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~i~~~a~~~l~~~s- 202 (436)
T COG2256 141 ---ENPSF-----------ELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIVLDEEALDYLVRLS- 202 (436)
T ss_pred ---CCCCE-----------EECHHHHHHH-HEEEEECCCHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHC-
T ss_conf ---89871-----------4038886110-41565169989999999999865413777--655668889999999862-
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 822062157999998
Q gi|254780877|r 804 DPSYGARPLKRVIQR 818 (853)
Q Consensus 804 ~~~~GaR~l~r~i~~ 818 (853)
.--||..-..++-
T Consensus 203 --~GD~R~aLN~LE~ 215 (436)
T COG2256 203 --NGDARRALNLLEL 215 (436)
T ss_pred --CCHHHHHHHHHHH
T ss_conf --8619999889999
No 83
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=7.2e-10 Score=99.16 Aligned_cols=203 Identities=22% Similarity=0.220 Sum_probs=141.0
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCHHHHHHHHHHHHHCCC---------CCH---HH--
Q ss_conf 56998729853333357899999996336777866895-2887407779999999873489---------984---44--
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLI-GDPGVGKTAIIEGLASRIINGD---------IPE---SL-- 232 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lv-Ge~GvGKtaive~la~~i~~~~---------vp~---~l-- 232 (853)
|-.+-|-..++-|||-+.-++-+...|...+-.+..|. |.-|||||++..-||+-+.-.. ++. .-
T Consensus 6 lark~RP~~f~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g 85 (717)
T PRK08853 6 LARKWRPTQFKEVVGQSHVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEG 85 (717)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCC
T ss_conf 77651798565513859999999999970997405761088988898999999998678999999978887026767447
Q ss_pred CCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CC
Q ss_conf 57437887313542174542024545899999986079---97699963627730266655433588887653124--66
Q gi|254780877|r 233 KGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GE 307 (853)
Q Consensus 233 ~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~ 307 (853)
+..-++++|. ++.+|= +.++.+++.+.-.+ .--|..|||+|||- ..+-|-|-..|.. .-
T Consensus 86 ~~~d~~EiDa------As~~~v--dd~rel~~~~~y~p~~~~yKvyiiDEvHmls--------~~afnAlLKtlEEPP~h 149 (717)
T PRK08853 86 RFVDLLEIDA------ASRTKV--EDTRELLDNVQYKPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPEY 149 (717)
T ss_pred CCCCEEEECC------CCCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCC--------HHHHHHHHHHHCCCCCC
T ss_conf 8775245405------656788--9999999855548877854799983054438--------99999998760378756
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
..+|-|||.- +| |- . ..-.|-|....+--+.++...-|..+... .+|.+.++||...++.++--+.|
T Consensus 150 v~FilaTT~~--~k-ip-~-TilSRc~~f~l~~~~~~~i~~~l~~i~~~----E~i~~~~~al~~ia~~a~Gs~Rd---- 216 (717)
T PRK08853 150 VKFLLATTDP--QK-LP-V-TILSRCLQFHLKPISVDQIHQQLDFVLDK----EQVSAEARALGLIAHAADGSMRD---- 216 (717)
T ss_pred EEEEEECCCH--HH-CC-H-HHHHHHHHCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 4899843873--43-73-8-89876544232689999999999999997----59876999999999976883778----
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 77899999999987
Q gi|254780877|r 388 DKAIDLMDEASARV 401 (853)
Q Consensus 388 DKAIDllDeA~A~~ 401 (853)
|+.|+|.|-|+-
T Consensus 217 --alsl~dqaia~~ 228 (717)
T PRK08853 217 --ALSLTDQAIALG 228 (717)
T ss_pred --HHHHHHHHHHHC
T ss_conf --888999999965
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.17 E-value=7.1e-10 Score=99.23 Aligned_cols=192 Identities=23% Similarity=0.420 Sum_probs=124.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCH---------HHHC
Q ss_conf 6745948999999999987410123656651289872678616889999999872377653002244---------7740
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDM---------SEYM 638 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dM---------sey~ 638 (853)
+.||||++.|..+.+||...|-+ -+|||.||-|||||..||.||+.| +.. --|+ .+..
T Consensus 14 ~d~~GQ~~iv~tL~NAi~~~ri~--------HAYLF~GpRGtGKTS~ARIfAKaL----NC~-~~~~~PCn~C~~C~~i~ 80 (363)
T TIGR02397 14 EDVIGQEHIVKTLKNAIKNGRIA--------HAYLFSGPRGTGKTSIARIFAKAL----NCQ-GPDGEPCNECESCKEIN 80 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC--------CEEEECCCCCCCHHHHHHHHHHHH----CCC-CCCCCCCCCCCHHHHHH
T ss_conf 10235179999999999718966--------234502859976355899999986----588-78778777750227765
Q ss_pred CCCCCCHH-HCCCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCE
Q ss_conf 34532013-047711203566774211322156----4102202144149899999999840457887999778303315
Q gi|254780877|r 639 EKHSVSRL-IGSPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTL 713 (853)
Q Consensus 639 e~~~vs~L-iGappGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~i 713 (853)
...++.=+ |.| +..=|=|+==.|.|.|+-.| |=|-..||++-=...=||.||--|+|== ++++
T Consensus 81 ~g~~~DviEiDA-ASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP-----------~hV~ 148 (363)
T TIGR02397 81 SGSSLDVIEIDA-ASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-----------EHVV 148 (363)
T ss_pred CCCCCCEEEECC-CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC-----------CCEE
T ss_conf 289866688648-6568788999998730368755443358873230286568999876522798-----------7628
Q ss_pred EE-ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 59-54851268764032679999999998628857726668158628899899999999999999999985798999988
Q gi|254780877|r 714 II-MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDD 792 (853)
Q Consensus 714 ii-~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~ 792 (853)
|| .||.. . ..|+=-|.|.. -+-|+.++.+++..-+.. -+...+ +.+++
T Consensus 149 FIlATTE~---------~------------KiP~TIlSRCQ-rF~Fk~i~~~~i~~~L~~-------I~~~E~--I~~e~ 197 (363)
T TIGR02397 149 FILATTEP---------H------------KIPATILSRCQ-RFDFKRIPLEDIVERLKK-------ILDKEG--IKIED 197 (363)
T ss_pred EEEECCCH---------H------------HCCCCCEEECE-EECCCCCCHHHHHHHHHH-------HHHHHC--CCCCH
T ss_conf 88734871---------1------------20554021000-312678998999999999-------998708--83177
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 99999997089822062157999998
Q gi|254780877|r 793 QVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 793 ~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
+|+.+|+..+ .-|.|.--..+++
T Consensus 198 ~AL~~IA~~a---~GS~RDAlsllDQ 220 (363)
T TIGR02397 198 EALELIARAA---DGSMRDALSLLDQ 220 (363)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHH
T ss_conf 8999999962---8961068899999
No 85
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.16 E-value=3.1e-09 Score=94.02 Aligned_cols=175 Identities=22% Similarity=0.401 Sum_probs=112.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHCCCCCCCH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776--5300224477403453201
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE--NSMIRIDMSEYMEKHSVSR 645 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~--~~lir~dMsey~e~~~vs~ 645 (853)
..++||+++++.+...+.. .+-| .+||.||+|+|||.+|+++|+.+||+. .+++-+|-|+...-+.|..
T Consensus 16 ~di~g~~~~~~~L~~~i~~-------~~~p--hlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~ 86 (318)
T PRK00440 16 DEVVGQEEIVERLKSFVKE-------KNMP--HLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRN 86 (318)
T ss_pred HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 9941969999999999987-------9986--698889599889999999999976986434768951645667178999
Q ss_pred HHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf 30477112035667742113221564102202144149899999999840457887999778303315595485126876
Q gi|254780877|r 646 LIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL 725 (853)
Q Consensus 646 LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~ 725 (853)
.|.. +.- +..+...||-|+++||++..+.+-++.|+.++++- -+||.|||++|--+..
T Consensus 87 ~i~~---~~~-------~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~-----------~~~~~fil~~n~~~ki- 144 (318)
T PRK00440 87 KIKE---FAR-------TAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQTTRFILSCNYSSKI- 144 (318)
T ss_pred HHHH---HHH-------HCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEECCCCCCC-
T ss_conf 9999---997-------26778997389998685532255678887643105-----------6662588634883337-
Q ss_pred HCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 40326799999999986288577266681586288998999999999999999999857989999889999999708
Q gi|254780877|r 726 IEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRG 802 (853)
Q Consensus 726 ~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 802 (853)
.|.+.+|. ..+.|+|++.+++...+..- ....+ +.+++++++.|+..+
T Consensus 145 -------------------i~~i~SRc-~~i~f~~~~~~~i~~~L~~I-------~~~E~--i~~~~~~l~~i~~~s 192 (318)
T PRK00440 145 -------------------IDPIQSRC-AVFRFSPLPKEAVIERLRYI-------AKNEG--LEITDDALEAIYYVS 192 (318)
T ss_pred -------------------CCCHHHHH-EEEECCCCCHHHHHHHHHHH-------HHHCC--CCCCHHHHHHHHHHC
T ss_conf -------------------61556551-01115789999999999999-------99859--998999999999864
No 86
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7e-09 Score=91.14 Aligned_cols=142 Identities=27% Similarity=0.448 Sum_probs=108.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77786689528874077799999998734899844457437887313542174542024545899999986079976999
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILF 276 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilf 276 (853)
+.....+|.|+||.|||.++..+|. ..+.++++++.+.++ .+|-||.|..++.+...+... .+.|+|
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~----------~~~~~fi~v~~~~l~--sk~vGesek~ir~~F~~A~~~-~p~iif 340 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL----------ESRSRFISVKGSELL--SKWVGESEKNIRELFEKARKL-APSIIF 340 (494)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH----------HCCCCEEEECCHHHH--HHHHHHHHHHHHHHHHHHHHC-CCCEEE
T ss_conf 8883699988999758999999875----------449824884335554--077659999999999999966-998897
Q ss_pred ECCHHHHCCCCCCC--CCC-CH-HHHHHHH--H-CCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHH
Q ss_conf 63627730266655--433-58-8887653--1-2466048997448999997300111320--2311-11157776789
Q gi|254780877|r 277 IDELHVLVGAGKTD--GAM-DA-SNLLKPS--L-ARGELHCIGATTLDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDT 346 (853)
Q Consensus 277 ide~h~~~gaG~~~--g~~-Da-an~LKP~--L-arG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t 346 (853)
|||+..+....+.. ++. .+ .++|.-. + ....+.+||||..-. .=|+|+-| ||+. |.|..|+.++-
T Consensus 341 iDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 341 IDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-----DLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-----CCCHHHHCCCCCEEEEEECCCCHHHH
T ss_conf 4886667412899876379999999999974754437648996479833-----26875624366303787179898999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999997898
Q gi|254780877|r 347 ISILRGLKER 356 (853)
Q Consensus 347 ~~iL~gl~~~ 356 (853)
..|++-....
T Consensus 416 ~~i~~~~~~~ 425 (494)
T COG0464 416 LEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHCC
T ss_conf 9999998541
No 87
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.15 E-value=4.8e-10 Score=100.60 Aligned_cols=118 Identities=31% Similarity=0.555 Sum_probs=86.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 68952887407779999999873489984445743788731354217454202454589999998607997699963627
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELH 281 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h 281 (853)
++|.|+||+|||.+++.+|... +..+++++.+.+. .+|.|+-+++++.+++.++.. .+.||||||+|
T Consensus 1 iLl~GppGtGKT~~a~~la~~~----------~~~~~~v~~~~~~--~~~~g~~~~~i~~~f~~a~~~-~p~Il~iDe~d 67 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV--SKYVGESEKRLRELFEAAKKL-APCVIFIDEID 67 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH----------CCCCEECCCCCCC--CCCCCHHHHHHHHHHHHHHHC-CCCEEEECHHH
T ss_conf 9878999999999999999997----------8985332420122--233450688899999999974-99189831167
Q ss_pred HHCCCCCCCCC---CCHHHHHHHHHCC-----CCEEEEEEECHHHHHHHHHCCHHHHH-CCCEEE
Q ss_conf 73026665543---3588887653124-----66048997448999997300111320-231111
Q gi|254780877|r 282 VLVGAGKTDGA---MDASNLLKPSLAR-----GELHCIGATTLDEYRKYIEKDPALAR-RFQSLL 337 (853)
Q Consensus 282 ~~~gaG~~~g~---~Daan~LKP~Lar-----G~l~~IgaTT~~Eyrk~iEkD~Al~R-RFq~i~ 337 (853)
.+.+.....+. ..+.+.|.+.|.. +.+-+||+|..- ..+ |+|+-| ||+.+.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~---~~l--d~al~r~Rfd~~i 127 (131)
T pfam00004 68 ALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRP---DKL--DPALLRGRFDRII 127 (131)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCH---HHC--CHHHHCCCCEEEE
T ss_conf 77516788888751326878999985022468876999975990---449--9779628332899
No 88
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.15 E-value=3.9e-10 Score=101.31 Aligned_cols=141 Identities=26% Similarity=0.395 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHH
Q ss_conf 33578999999963367778668952887407779999999873489984445743788731354217454202454589
Q gi|254780877|r 181 IGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLK 260 (853)
Q Consensus 181 IGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~ 260 (853)
.|++.+++.+...+......|.+|.|+||+|||.++..+|+... ..+..++.++.+.+..+....+++.....
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-------RPGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC-------CCCCCEEEEEHHHCCHHHHHHHHHHHHHH
T ss_conf 98579999999998187998089989999886599999999712-------13798278547770467777576057788
Q ss_pred HHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHH----CCCCEEEEEEECHHHHHHHHHCCHHHHHCCCE
Q ss_conf 9999986079976999636277302666554335888876531----24660489974489999973001113202311
Q gi|254780877|r 261 SLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSL----ARGELHCIGATTLDEYRKYIEKDPALARRFQS 335 (853)
Q Consensus 261 ~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~L----arG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~ 335 (853)
...........+.||||||++.+-. +... ...++|.-.+ ..+..++|++|+..+. ...+.++..||..
T Consensus 74 ~~~~~~~~~~~~~vl~iDEi~~l~~-~~~~---~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~---~~~~~~~~~R~~~ 145 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSR-GAQN---ALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDI 145 (151)
T ss_pred HHHHHHHHHCCCCEEEEECHHHCCH-HHHH---HHHHHHHHHCCCCCCCCCEEEEEEECCCCC---CCHHHHHHCCCCE
T ss_conf 9899999976998698201665599-9999---999999871575406788899995289988---6837764255986
No 89
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.1e-09 Score=97.67 Aligned_cols=165 Identities=24% Similarity=0.396 Sum_probs=109.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC--CCCCCHH---HHCCCC
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653--0022447---740345
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS--MIRIDMS---EYMEKH 641 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~--lir~dMs---ey~e~~ 641 (853)
...||||++++..+.+++...|. | -++||.||.|||||.+|..+|++|+..... .-.-... +....|
T Consensus 16 ~~~liGqe~~~~~L~~a~~~grl-------~-HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~ 87 (363)
T PRK07471 16 TTALFGHAAAEAALLDAYRSGRL-------H-HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDH 87 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 27316819999999999985997-------6-458767999818899999999998579997777767870531258777
Q ss_pred CCCHHH--CCCCHHCC----CCCC-C-----CCCHHHH-------CCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 320130--47711203----5667-7-----4211322-------156----4102202144149899999999840457
Q gi|254780877|r 642 SVSRLI--GSPPGYVG----YEEG-G-----ALTEAVR-------RHP----YQVVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 642 ~vs~Li--GappGYvG----~~~g-g-----~Lte~vr-------~~P----~sVil~DEiEKah~~v~~~llqild~G~ 698 (853)
.+.+.| |+-|++.. +++. + +-.+.|| ..| |=|+++|+.|+.+.+-+|.||.+|+|=
T Consensus 88 p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEP- 166 (363)
T PRK07471 88 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP- 166 (363)
T ss_pred CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC-
T ss_conf 2899995269998466762001133321244539999999999724852489669998687873889999999972158-
Q ss_pred EECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHH
Q ss_conf 8879997783033155954851268764032679999999998628857726668158628899899999999
Q gi|254780877|r 699 LTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVR 771 (853)
Q Consensus 699 ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~ 771 (853)
-.|++|||.|+--. .+.|-.+.|. ..+.|+||+.+++.+.+.
T Consensus 167 ----------P~~t~fiLit~~~~--------------------~llpTI~SRC-q~~~~~~l~~~~~~~~L~ 208 (363)
T PRK07471 167 ----------PARSLLLLVSHAPA--------------------RLLPTIRSRC-RKLRLRPLAPEDVIAALA 208 (363)
T ss_pred ----------CCCEEEEEEECCHH--------------------HCHHHHHHHC-CCCCCCCCCHHHHHHHHH
T ss_conf ----------98838998639977--------------------7779999735-242589959999999999
No 90
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.14 E-value=1.4e-06 Score=72.43 Aligned_cols=143 Identities=32% Similarity=0.521 Sum_probs=93.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCC------CCCCHHHHC
Q ss_conf 66512898726786168899999998723776530022447740345320130477112035667------742113221
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG------GALTEAVRR 668 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~g------g~Lte~vr~ 668 (853)
+=|+ |.-|||.+|||.+-+-||+.. ...++|||-.|-++ ..--||+ ||--+.| |.|.||+|+
T Consensus 888 ~fP~---LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd---lqeYiGT---yvTdd~G~lsFkEGvLVeAlR~ 955 (4600)
T COG5271 888 NFPL---LIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD---LQEYIGT---YVTDDDGSLSFKEGVLVEALRR 955 (4600)
T ss_pred CCCE---EEECCCCCCCCHHHHHHHHHH---CCCEEEECCCCCCH---HHHHHHC---EEECCCCCEEEEHHHHHHHHHC
T ss_conf 7867---986688877004999999873---76079865855434---9987430---3506898565401078998856
Q ss_pred CCCCEEEEHHHHHCCHHHHHHHHHHHHCCE-EE--CCCCCEEECCCCEEEECCCH----HHHHHHCCHHHHHHHHHHHHH
Q ss_conf 564102202144149899999999840457-88--79997783033155954851----268764032679999999998
Q gi|254780877|r 669 HPYQVVLFDEIEKAHSDVHNILLQVLDDGR-LT--DSQGRTVDFRNTLIIMTSNL----GAEYLIEDGDSVHDKVMGIVR 741 (853)
Q Consensus 669 ~P~sVil~DEiEKah~~v~~~llqild~G~-lt--d~~G~~v~f~n~iii~TsN~----G~~~~~~~~~~~~~~~~~~l~ 741 (853)
-- -|.+||..-|..||+..|=.+|||-| |. .-.--.+---|-.++.|-|- |.+ +.+
T Consensus 956 Gy--WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGR--------------K~L- 1018 (4600)
T COG5271 956 GY--WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGR--------------KGL- 1018 (4600)
T ss_pred CC--EEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEEEEEECCCCCCCCCH--------------HHH-
T ss_conf 86--7996102467077999999864466402067755243358873688613898653412--------------777-
Q ss_pred HHCCHHHHCCCCCEEECCCCCHHHHHHHH
Q ss_conf 62885772666815862889989999999
Q gi|254780877|r 742 SAFKPEFLNRLDEIILFEKLRKEDMAKIV 770 (853)
Q Consensus 742 ~~f~peflnRid~iv~F~~l~~~~~~~i~ 770 (853)
+-.|.||+= -+.|..+..+++..|+
T Consensus 1019 ---SrAFRNRFl-E~hFddipedEle~IL 1043 (4600)
T COG5271 1019 ---SRAFRNRFL-EMHFDDIPEDELEEIL 1043 (4600)
T ss_pred ---HHHHHHHHH-HHHCCCCCHHHHHHHH
T ss_conf ---799986567-6421358578999999
No 91
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=2.5e-09 Score=94.78 Aligned_cols=202 Identities=18% Similarity=0.207 Sum_probs=139.3
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHCCC----CCH----H--------
Q ss_conf 69987298533333578999999963367778-668952887407779999999873489----984----4--------
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRTKN-NPVLIGDPGVGKTAIIEGLASRIINGD----IPE----S-------- 231 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~-n~~lvGe~GvGKtaive~la~~i~~~~----vp~----~-------- 231 (853)
-.+.|-..++-|||-+.-++.+...+...+=. .-++-|+.|||||+.+.-+|.-+.-.. -|. .
T Consensus 12 a~KyRP~~f~~liGQ~~~~~~l~n~i~~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i 91 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISF 91 (507)
T ss_pred EECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 32007997656239399999999999739966347745879978899999999996799988889988888887678998
Q ss_pred HC--CCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC--
Q ss_conf 45--7437887313542174542024545899999986079---9769996362773026665543358888765312--
Q gi|254780877|r 232 LK--GKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA-- 304 (853)
Q Consensus 232 l~--~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La-- 304 (853)
-. ..-|+++|.++- +|= +.++.+++.+.-++ .--|..|||+|++ +-+|-|-|--.|.
T Consensus 92 ~~~~~~dv~EiDaas~------~gv--~~ir~l~~~~~~~p~~~~~kv~iidE~hml--------s~~a~nallktlEep 155 (507)
T PRK06645 92 NNHNHPDIIEIDAASK------TSV--DDIRRIIESAEYKPLQGKHKIFIIDEVHML--------SKGAFNALLKTLEEP 155 (507)
T ss_pred HCCCCCCEEEEECCCC------CCH--HHHHHHHHHCCCCCCCCCEEEEEECCHHHC--------CHHHHHHHHHHHHCC
T ss_conf 6589998599637888------888--999999863551787674358995214224--------899999999974278
Q ss_pred CCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 46604899744899999730011132023111115777678999999978986541496101589999986333202457
Q gi|254780877|r 305 RGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDR 384 (853)
Q Consensus 305 rG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r 384 (853)
-....+|=|||.- +|.. . ..-.|-|+....--+.++-..-|+.+... .++.|+++||...++.|.-=+.|
T Consensus 156 p~~~~Fi~atte~--~kip--~-ti~srcq~f~~~~i~~~~i~~~l~~i~~~----E~~~~~~~al~~ia~~a~Gs~RD- 225 (507)
T PRK06645 156 PPHIIFIFATTEV--QKIP--A-TIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKADIEALRIIAYKSEGSARD- 225 (507)
T ss_pred CCCEEEEEECCCH--HHCC--H-HHHHHCEEEEEECCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH-
T ss_conf 6443899974853--6483--7-88854327875459979999999999997----68777789999999855998678-
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 67477899999999987
Q gi|254780877|r 385 FLPDKAIDLMDEASARV 401 (853)
Q Consensus 385 ~lPDKAIDllDeA~A~~ 401 (853)
|+.|||.|.|.-
T Consensus 226 -----alslldqai~~~ 237 (507)
T PRK06645 226 -----AVSILDQAASMS 237 (507)
T ss_pred -----HHHHHHHHHHHH
T ss_conf -----999999999975
No 92
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.14 E-value=4.7e-09 Score=92.54 Aligned_cols=217 Identities=19% Similarity=0.268 Sum_probs=130.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC---CCCCCCCC----HHHHCCC
Q ss_conf 6745948999999999987410123656651289872678616889999999872377---65300224----4774034
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD---ENSMIRID----MSEYMEK 640 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~---~~~lir~d----Msey~e~ 640 (853)
..|+||++|..++.-+. -+|+ +|..|+.||.|+|||.+|++|+..|=.- +..-+-.+ +.++.+.
T Consensus 8 s~IvGQe~~K~AL~laa-------v~p~--~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~ 78 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTA-------IDPG--IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEV 78 (334)
T ss_pred HHHCCCHHHHHHHHHHH-------CCCC--CCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHC
T ss_conf 37649399999999977-------2789--86089978998659999999997289951103675566774211334311
Q ss_pred ----------------CCCC--HHHCCC---CHHCC---CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHC
Q ss_conf ----------------5320--130477---11203---56677421132215641022021441498999999998404
Q gi|254780877|r 641 ----------------HSVS--RLIGSP---PGYVG---YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDD 696 (853)
Q Consensus 641 ----------------~~vs--~LiGap---pGYvG---~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~ 696 (853)
+.++ +++|+- ..-+| -=+-|.|..|= ..|+++|||.-....+.+.|||.+++
T Consensus 79 ~~~~~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~~~~PGlLa~Ah----~GVLylDEinll~~~vld~Ll~~~e~ 154 (334)
T PRK13407 79 SSTTMVERPTPVIDLPLGATEDRVVGALDIERALTRGEKAFEPGLLARAN----RGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCC----CCEEEEECHHHCCHHHHHHHHHHHHC
T ss_conf 45553448998767899999866447421888862698778860543402----88678720533338899999988716
Q ss_pred CEEEC-CCCCEEEC-CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCC-CHHHHHHHHHHH
Q ss_conf 57887-99977830-3315595485126876403267999999999862885772666815862889-989999999999
Q gi|254780877|r 697 GRLTD-SQGRTVDF-RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKL-RKEDMAKIVRIQ 773 (853)
Q Consensus 697 G~ltd-~~G~~v~f-~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l-~~~~~~~i~~~~ 773 (853)
|+.+= -.|.++.+ .+.++|-|.|= + ...++|.++.||+-.|..... +.++-..|++..
T Consensus 155 G~~~IeReg~s~~~ParF~LVatmNP---------e----------Eg~Lrp~lLDRf~l~v~v~~~~~~~~r~eiv~r~ 215 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGNP---------E----------EGELRPQLLDRFGLSVEVRSPRDVETRVEVITRR 215 (334)
T ss_pred CCEEEEECCEEEECCCCCEEEEEECC---------C----------CCCCCHHHHHHHCEEEEECCCCCHHHHHHHHHHH
T ss_conf 95799977634603662658982088---------8----------7775989983610068714878877766889999
Q ss_pred H-----------------HHHHHHH-H--HCCCEEEECHHHHHHHHHCCCCC-CCCCHHHHHHH
Q ss_conf 9-----------------9999999-8--57989999889999999708982-20621579999
Q gi|254780877|r 774 L-----------------GRVLSLI-K--ERNISMDFDDQVIDWLSCRGYDP-SYGARPLKRVI 816 (853)
Q Consensus 774 l-----------------~~l~~~l-~--~~~i~l~~~~~~~~~l~~~~~~~-~~GaR~l~r~i 816 (853)
. ..+..++ + .+=-.+.++++...+++..+... ..|.|.--+.+
T Consensus 216 ~~~~~~~~~~~~~~~~e~~~l~~~i~~Ar~~l~~v~~~d~~~~~~~~~~~~~~~~g~Ra~i~l~ 279 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARAALPQLKTPDTVLHDCAALCIALGSDGLRGELTLL 279 (334)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9865387999998898999999999999875114689999999999999985898710999999
No 93
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.14 E-value=1.2e-06 Score=73.04 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=54.0
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 717999999999999999828996338999999861887668999997399989999999999
Q gi|254780877|r 5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTV 67 (853)
Q Consensus 5 kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~ 67 (853)
.+|..++.+|+.|...|...++.+|+++|+|++|+.++++.+..+|...+++...+.+.+...
T Consensus 79 ~~t~~~~rvl~~A~~~a~~~g~~~v~~~~lLlall~e~~~~a~~~L~~~~i~~~~~~~~i~~~ 141 (758)
T PRK11034 79 QPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG 141 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 877789999999999999839983049999999971785589999997799889999999722
No 94
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.13 E-value=3e-09 Score=94.13 Aligned_cols=184 Identities=18% Similarity=0.381 Sum_probs=120.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHCCCCCC--
Q ss_conf 67459489999999999874101236566512898726786168899999998723776--53002244774034532--
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE--NSMIRIDMSEYMEKHSV-- 643 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~--~~lir~dMsey~e~~~v-- 643 (853)
+.|+||+++++.+.+.+.. .+-| .+||.||+|+|||.+|+++|+.||++. .+.+.++-|++.+....
T Consensus 15 ~dvvGq~~i~~~L~~~~~~-------~~~p--hlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i 85 (337)
T PRK12402 15 EDILGQESVVDHLSALAAS-------GNLP--HLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYL 85 (337)
T ss_pred HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE
T ss_conf 9803979999999999977-------9987--698889298489999999999967997567833311653113564001
Q ss_pred ------CHHHCCCCHHCCCCCCCCCCHHH----H----CCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEEC
Q ss_conf ------01304771120356677421132----2----156410220214414989999999984045788799977830
Q gi|254780877|r 644 ------SRLIGSPPGYVGYEEGGALTEAV----R----RHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDF 709 (853)
Q Consensus 644 ------s~LiGappGYvG~~~gg~Lte~v----r----~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f 709 (853)
...++.| +-.|-..-....+.+ . ..+|-|+++||.+.-+++.++.|+.++++- -
T Consensus 86 ~~~~~~~~~~~~~-~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~-----------~ 153 (337)
T PRK12402 86 VEDPRFAHFYDDP-KRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERY-----------S 153 (337)
T ss_pred ECCCCHHHHHCCH-HHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------C
T ss_conf 0166423442015-332773789999999998614887788049997071317999999999887408-----------8
Q ss_pred CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 33155954851268764032679999999998628857726668158628899899999999999999999985798999
Q gi|254780877|r 710 RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMD 789 (853)
Q Consensus 710 ~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 789 (853)
.+|.||+++|--+ ...|.+.+|. ..+.|+|++.+++...+.. -....++ .
T Consensus 154 ~~~~fIl~t~~~~--------------------~ii~tI~SRC-~~i~F~~~s~~~i~~~L~~-------I~~~E~i--~ 203 (337)
T PRK12402 154 ETCRFIFSTTQPS--------------------KLIPPIRSRC-LPLFFRPVPDDEIRSVLES-------IAAAEGV--E 203 (337)
T ss_pred CCEEEEEECCCCC--------------------CCCHHHHHHC-EEEECCCCCHHHHHHHHHH-------HHHHCCC--C
T ss_conf 7669987238644--------------------4752477624-4543589899999999999-------9998499--9
Q ss_pred ECHHHHHHHHHCC
Q ss_conf 9889999999708
Q gi|254780877|r 790 FDDQVIDWLSCRG 802 (853)
Q Consensus 790 ~~~~~~~~l~~~~ 802 (853)
+++++++.|++.+
T Consensus 204 ~~~~~l~~ia~~s 216 (337)
T PRK12402 204 ISDDGLDLIAYYA 216 (337)
T ss_pred CCHHHHHHHHHHC
T ss_conf 8999999999986
No 95
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.6e-06 Score=70.30 Aligned_cols=189 Identities=14% Similarity=0.182 Sum_probs=98.7
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 71799999999999999982899633899999986188766899999739998999999999997459547897777069
Q gi|254780877|r 5 KYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVTGGGAQVYLS 84 (853)
Q Consensus 5 kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~~~~~~~~~S 84 (853)
.||+....++..|..+|...++.||+++|||++++..+.+.+..+|...+++...+.+.+..+-... .......+...
T Consensus 73 ~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 150 (786)
T COG0542 73 YLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGN-EVDSKNAEEDQ- 150 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCH-
T ss_conf 8787799999999999875157655589999998617622789999866577777999999973466-66776665324-
Q ss_pred HHHHHHHHHHHHHHHHC-CCCCCCHHH---HHHHHH-HCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 89999999999999971-987025999---876687-2775178899975999899999999873778878777546761
Q gi|254780877|r 85 QPLAVILSKSEEIAKKS-GDSFVTAEK---FLLAMV-METGGIGESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFD 159 (853)
Q Consensus 85 ~~l~rvL~~A~~~A~~~-g~~~I~~eh---LLlAIl-~e~~s~a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~ 159 (853)
+.+.+--..--..|..- =++.|+=.+ =.+.+| +-...-.-+.-+.|+....+.+.+..-......+..= ..
T Consensus 151 ~~L~~~~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L--~~-- 226 (786)
T COG0542 151 DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESL--KD-- 226 (786)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHH--CC--
T ss_conf 46998741147998658988773747999999999835688998476689888999998999997469999787--58--
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 07886443569987298533333-57899999996336777866895
Q gi|254780877|r 160 ALKKYCRDLTEEARNGKLDPVIG-RDDEMRRAIQVLSRRTKNNPVLI 205 (853)
Q Consensus 160 ~L~ky~~DLTe~Ar~GkLDPVIG-Re~EI~~~~~iL~r~~k~n~~lv 205 (853)
-.-|+-||..+-.--+.. | =|+=++.++.=+.... |+||.
T Consensus 227 -~~i~sLD~g~LvAGakyR---GeFEeRlk~vl~ev~~~~--~vILF 267 (786)
T COG0542 227 -KRIYSLDLGSLVAGAKYR---GEFEERLKAVLKEVEKSK--NVILF 267 (786)
T ss_pred -CEEEEECHHHHHCCCCCC---CCHHHHHHHHHHHHHCCC--CEEEE
T ss_conf -879971487674646535---738999999999985179--84999
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=2.4e-09 Score=94.98 Aligned_cols=203 Identities=22% Similarity=0.268 Sum_probs=134.1
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHCCC-C---CH----------HH
Q ss_conf 5699872985333335789999999633677-78668952887407779999999873489-9---84----------44
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRT-KNNPVLIGDPGVGKTAIIEGLASRIINGD-I---PE----------SL 232 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~-k~n~~lvGe~GvGKtaive~la~~i~~~~-v---p~----------~l 232 (853)
|-.+-|-..++-|||-+.-++-+...|...+ -.--++-|.-|||||++..-||+.+.-.+ + |- .-
T Consensus 6 lark~RP~~F~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g 85 (704)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG 85 (704)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 77651887475641869999999999981997523750278987888999999999679999999978777767878558
Q ss_pred CCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC--CCC
Q ss_conf 57437887313542174542024545899999986079---9769996362773026665543358888765312--466
Q gi|254780877|r 233 KGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA--RGE 307 (853)
Q Consensus 233 ~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La--rG~ 307 (853)
...-++++|.+ +.+|= +.++.|++.+.-.+ .--|..|||+|||- -.+-|-|--.|. -.-
T Consensus 86 ~~~D~~EiDaA------s~~~v--dd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs--------~~afNAlLKtLEEPP~~ 149 (704)
T PRK08691 86 RYVDLLEIDAA------SNTGI--DNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPPEH 149 (704)
T ss_pred CCCCEEEEECC------CCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCC--------HHHHHHHHHHHCCCCCC
T ss_conf 99874774245------44588--9999999853468867853599983154438--------99999999861479756
Q ss_pred EEEEEEECHHHHHHHHHCCH-HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 04899744899999730011-13202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDP-ALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~-Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
..+|-|||.-+ | =+ ..-.|-|....+--+.++-..-|..+.. ..+|.|.++||...++.++--+.|
T Consensus 150 v~FilaTTdp~--K----lp~TIlSRC~~f~l~~~~~~~i~~~L~~i~~----~E~i~~e~~al~~ia~~a~Gs~RD--- 216 (704)
T PRK08691 150 VKFILATTDPH--K----VPVTVLSRCLQFVLRNMTAQQVADHLAHVLD----SEKIAYEPPALQLLGRAAAGSMRD--- 216 (704)
T ss_pred EEEEEECCCHH--H----CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 08998548846--4----7589998887710268999999999999999----839856899999999975785777---
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 4778999999999875
Q gi|254780877|r 387 PDKAIDLMDEASARVR 402 (853)
Q Consensus 387 PDKAIDllDeA~A~~~ 402 (853)
|+.|+|.|-|+-.
T Consensus 217 ---alslldQaia~~~ 229 (704)
T PRK08691 217 ---ALSLLDQAIALGS 229 (704)
T ss_pred ---HHHHHHHHHHHCC
T ss_conf ---9889999999648
No 97
>KOG0989 consensus
Probab=99.12 E-value=4.7e-09 Score=92.55 Aligned_cols=176 Identities=24% Similarity=0.413 Sum_probs=97.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHCCC---
Q ss_conf 7674594899999999998741012365665128987267861688999999987237765---3002244774034---
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDEN---SMIRIDMSEYMEK--- 640 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~---~lir~dMsey~e~--- 640 (853)
-..++||++.|..+.+++.+ + +-| .+||-||+|+|||.+|+++|..||+.+. .++-.+-|.....
T Consensus 35 ~de~~gQe~vV~~L~~a~~~-~------~lp--~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv 105 (346)
T KOG0989 35 FDELAGQEHVVQVLKNALLR-R------ILP--HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV 105 (346)
T ss_pred HHHHCCHHHHHHHHHHHHHH-C------CCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCH
T ss_conf 77650159999999999860-6------886--07866899986768999999985574235554243136600143100
Q ss_pred ----CCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEE
Q ss_conf ----5320130477112035667742113221564102202144149899999999840457887999778303315595
Q gi|254780877|r 641 ----HSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIM 716 (853)
Q Consensus 641 ----~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~ 716 (853)
..-++|.+.-++-.|| --.||-||.|||.+-...+-|+.|..++|+- -+++.||+
T Consensus 106 r~Kik~fakl~~~~~~~~~~----------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-----------s~~trFiL 164 (346)
T KOG0989 106 REKIKNFAKLTVLLKRSDGY----------PCPPFKIIILDECDSMTSDAQAALRRTMEDF-----------SRTTRFIL 164 (346)
T ss_pred HHHHCCHHHHHHCCCCCCCC----------CCCCCEEEEEECHHHHHHHHHHHHHHHHHCC-----------CCCEEEEE
T ss_conf 66523799875025565678----------8986328997416453099999999998625-----------46659999
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 48512687640326799999999986288577266681586288998999999999999999999857989999889999
Q gi|254780877|r 717 TSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVID 796 (853)
Q Consensus 717 TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~ 796 (853)
-+|-=+. .++.+..|.. -+.|.+|..+++...+. .-....|+ .+++.+++
T Consensus 165 Icnylsr--------------------ii~pi~SRC~-KfrFk~L~d~~iv~rL~-------~Ia~~E~v--~~d~~al~ 214 (346)
T KOG0989 165 ICNYLSR--------------------IIRPLVSRCQ-KFRFKKLKDEDIVDRLE-------KIASKEGV--DIDDDALK 214 (346)
T ss_pred ECCCHHH--------------------CCHHHHHHHH-HHCCCCCCHHHHHHHHH-------HHHHHHCC--CCCHHHHH
T ss_conf 7388564--------------------7728774677-71288764478999999-------99888589--97878999
Q ss_pred HHHHCC
Q ss_conf 999708
Q gi|254780877|r 797 WLSCRG 802 (853)
Q Consensus 797 ~l~~~~ 802 (853)
+|++.+
T Consensus 215 ~I~~~S 220 (346)
T KOG0989 215 LIAKIS 220 (346)
T ss_pred HHHHHC
T ss_conf 999973
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=2.6e-09 Score=94.60 Aligned_cols=204 Identities=26% Similarity=0.288 Sum_probs=132.8
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHC-CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-C---C--------HHHCC
Q ss_conf 5699872985333335789999999633-67778668952887407779999999873489-9---8--------44457
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLS-RRTKNNPVLIGDPGVGKTAIIEGLASRIINGD-I---P--------ESLKG 234 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~-r~~k~n~~lvGe~GvGKtaive~la~~i~~~~-v---p--------~~l~~ 234 (853)
|-.+-|-..++-|||-+.-++.+...|. .|--.--++.|..|||||++..-||+.+.-.+ + | ....|
T Consensus 6 lark~Rp~~f~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g 85 (643)
T PRK07994 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 85 (643)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 77652888666653879999999999982986634874589988888999999999679999999978767768988658
Q ss_pred --CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHCC-CC
Q ss_conf --437887313542174542024545899999986079--9-76999636277302666554335888-87653124-66
Q gi|254780877|r 235 --KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASN-LLKPSLAR-GE 307 (853)
Q Consensus 235 --~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan-~LKP~Lar-G~ 307 (853)
.-++++| +++-+|- +-++.+++.+.-.+ | --|-.|||+|||- -.+-| +||..=.- --
T Consensus 86 ~~~d~~eid------aas~~~v--d~~rel~~~~~y~p~~~r~kvyiidEvhmls--------~~afnalLKtlEePp~h 149 (643)
T PRK07994 86 RFVDLIEID------AASRTKV--EDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPAH 149 (643)
T ss_pred CCCCEEEEE------CCCCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCC--------HHHHHHHHHHHCCCCHH
T ss_conf 988758863------6777888--9999999844668877853699972210158--------99999999862378610
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
..+|-|||.- +|. ...-|.| -|.-..+.-+.++-..-|..+.. ..+|.|.++||...++.++--+.|
T Consensus 150 v~filaTT~~--~k~--p~TilSR-C~~f~~~~~~~~~i~~~l~~i~~----~e~i~~~~~al~~ia~~a~gs~rd---- 216 (643)
T PRK07994 150 VKFLLATTDP--QKL--PVTILSR-CLQFHLKALDVEQIRHQLEHILN----EEHIAHEPRALQLLARAADGSLRD---- 216 (643)
T ss_pred CEEEEECCCH--HHC--CHHHHHH-HHHEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 0899860774--548--4789977-76500166999999999999999----759987889999999974786566----
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 778999999999875
Q gi|254780877|r 388 DKAIDLMDEASARVR 402 (853)
Q Consensus 388 DKAIDllDeA~A~~~ 402 (853)
|..|+|.|-|+-.
T Consensus 217 --alsl~dq~i~~~~ 229 (643)
T PRK07994 217 --ALSLTDQAIASGD 229 (643)
T ss_pred --HHHHHHHHHHHCC
T ss_conf --8889999998658
No 99
>PRK04195 replication factor C large subunit; Provisional
Probab=99.08 E-value=1.5e-09 Score=96.55 Aligned_cols=176 Identities=22% Similarity=0.411 Sum_probs=117.3
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
..|+||+++++.+..-+..-..| ..+.| .+||.||+|||||.+|++||+.+. -.++-+|-|+.-....+.+.+
T Consensus 14 ~divg~~~~v~~l~~Wl~~w~~g-~~~~k---~lLL~GPpGvGKTT~a~~lAk~~g---~~viElNASD~R~~~~I~~~i 86 (403)
T PRK04195 14 SDVVGNEKAKKQLREWIESWLKG-KPPKK---ALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQRTKDVIERVA 86 (403)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCC-CCCCC---EEEEECCCCCCHHHHHHHHHHHHC---CCEEEECCCCCCCHHHHHHHH
T ss_conf 99858899999999999998739-96574---699889399879999999999849---985997710114789999999
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHH----HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 47711203566774211322156410220214414989----99999998404578879997783033155954851268
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSD----VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~----v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
+..-. .+.|+ ..++-+|++||++--|.. -+..+++++.+. ..-|||++|=
T Consensus 87 ~~~~~------~~sl~----~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s-------------~~PiIli~Nd--- 140 (403)
T PRK04195 87 GEAST------SGSLF----GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA-------------KNPIILTAND--- 140 (403)
T ss_pred HHHHH------CCCCC----CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-------------CCEEEEEECC---
T ss_conf 98760------68877----8873499963434457244479999999998548-------------8708998268---
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 7640326799999999986288577266681586288998999999999999999999857989999889999999708
Q gi|254780877|r 724 YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRG 802 (853)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 802 (853)
.. . ...+.+.+|. ..+.|+|++..++.+.+..- ....|+ .+++.+++.|++.+
T Consensus 141 -----~~---~--------~~~~~lrs~c-~~i~F~~~~~~~I~~~L~~I-------~~~Egi--~i~~~aL~~Ia~~s 193 (403)
T PRK04195 141 -----PY---D--------PSLRPLRNAC-LMIEFKRLSKRSIVPVLKRI-------CRKEGI--ECEEEALREIAERS 193 (403)
T ss_pred -----CC---C--------CCHHHHHHHH-HHCCCCCCCHHHHHHHHHHH-------HHHCCC--CCCHHHHHHHHHHC
T ss_conf -----45---5--------6717799766-12217994999999999999-------997699--99999999999987
No 100
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=3.2e-09 Score=93.89 Aligned_cols=203 Identities=23% Similarity=0.261 Sum_probs=135.5
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCHHHHHHHHHHHHHCCCC----CH--------HHC-
Q ss_conf 56998729853333357899999996336777866895-28874077799999998734899----84--------445-
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLI-GDPGVGKTAIIEGLASRIINGDI----PE--------SLK- 233 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lv-Ge~GvGKtaive~la~~i~~~~v----p~--------~l~- 233 (853)
|-.+-|-..++-|||-+.-++-+...|...+-.+..|. |.-|||||++..-||+-+.-..- |- .-.
T Consensus 6 lark~RP~~f~e~vGQ~~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g 85 (816)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85 (816)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 77550898576623849999999999970986314751178988888999999998678999998978775557877558
Q ss_pred -CCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHCC--C
Q ss_conf -7437887313542174542024545899999986079---976999636277302666554335888-87653124--6
Q gi|254780877|r 234 -GKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASN-LLKPSLAR--G 306 (853)
Q Consensus 234 -~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan-~LKP~Lar--G 306 (853)
..-++++|.+ +-+|- +.++.+++.+.-.+ .--|.+|||+|||-. .+=| ||| .|.. .
T Consensus 86 ~~~d~iEiDaA------S~~~v--d~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~--------~afnalLK-tlEepP~ 148 (816)
T PRK07003 86 RFVDYVEMDAA------SNRGV--DEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------HAFNAMLK-TLEEPPP 148 (816)
T ss_pred CCCCEEEEECC------CCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCCH--------HHHHHHHH-HHCCCCC
T ss_conf 87754786355------43576--89999998622478667447999841543399--------99999998-4037986
Q ss_pred CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 60489974489999973001113202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 307 ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 307 ~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
-..+|-|||.- .| | ... .-.|-|.-..+--+.++...-|..+... .+|.|.++||...++.++--|.|
T Consensus 149 hv~FilaTTd~--~k-~-p~t-ilSRc~~f~l~~~~~~~i~~~l~~i~~~----E~i~~e~~al~lia~~a~GsmRD--- 216 (816)
T PRK07003 149 HVKFILATTDP--QK-I-PVT-VLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSMRD--- 216 (816)
T ss_pred CEEEEEECCCH--HH-C-CHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 64899955880--11-5-288-9877765223679999999999999998----29977999999999976773788---
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 4778999999999875
Q gi|254780877|r 387 PDKAIDLMDEASARVR 402 (853)
Q Consensus 387 PDKAIDllDeA~A~~~ 402 (853)
|+.|+|.|-|+-.
T Consensus 217 ---alsl~dQaia~~~ 229 (816)
T PRK07003 217 ---ALSLTDQAIAYSA 229 (816)
T ss_pred ---HHHHHHHHHHHCC
T ss_conf ---8859999998469
No 101
>KOG2028 consensus
Probab=99.07 E-value=2e-09 Score=95.53 Aligned_cols=188 Identities=26% Similarity=0.382 Sum_probs=122.3
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHH--HHH-HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 35699872985333335789999--999-633677786689528874077799999998734899844457437887313
Q gi|254780877|r 167 DLTEEARNGKLDPVIGRDDEMRR--AIQ-VLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 167 DLTe~Ar~GkLDPVIGRe~EI~~--~~~-iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
-|.+++|-..||-.+|-+.-+-+ ++. .+...+-+..||-|+||+|||+|+.-+|.-- .-+ .++.+++.
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~----SyrfvelS-- 197 (554)
T KOG2028 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKH----SYRFVELS-- 197 (554)
T ss_pred CHHHHCCCCHHHHHCCHHHHCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCC----CEEEEEEE--
T ss_conf 745541843687750534414832689999870888705886699876588999998605---777----42799974--
Q ss_pred HHHCCCC-CCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf 5421745-420245458999999860799769996362773026665543358888765312466048997448999997
Q gi|254780877|r 244 ALIAGAK-FRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKY 322 (853)
Q Consensus 244 ~l~ag~~-~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~ 322 (853)
+.-|++. .|+-||.- ++.. .-.+.+.||||||||-.-- ++ -.++-|....|.|..|||||..- .
T Consensus 198 At~a~t~dvR~ife~a-q~~~---~l~krkTilFiDEiHRFNk--sQ------QD~fLP~VE~G~I~lIGATTENP---S 262 (554)
T KOG2028 198 ATNAKTNDVRDIFEQA-QNEK---SLTKRKTILFIDEIHRFNK--SQ------QDTFLPHVENGDITLIGATTENP---S 262 (554)
T ss_pred CCCCCHHHHHHHHHHH-HHHH---HHHCCEEEEEEHHHHHHHH--HH------HHCCCCEECCCCEEEEECCCCCC---C
T ss_conf 1456618899999998-8787---6524406987377655323--21------10034213067069985366897---6
Q ss_pred HHCCHHHHHCCCEEECCCCCHHHHHHHH-HHHHHHHHH--------HCCCCCCHHHHHHHHHHHH
Q ss_conf 3001113202311111577767899999-997898654--------1496101589999986333
Q gi|254780877|r 323 IEKDPALARRFQSLLVGEPTVTDTISIL-RGLKERYEQ--------HHKVRISDSALVSAAVLSN 378 (853)
Q Consensus 323 iEkD~Al~RRFq~i~V~Eps~~~t~~iL-~gl~~~yE~--------~H~V~i~d~al~~av~ls~ 378 (853)
|.-+.||-.|--.+.++...++....|| |++..--+. +--+++.|.+|++.+.+|+
T Consensus 263 Fqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028 263 FQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred CCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 01127787316066733688899999999998763210256889998312456889999987047
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=3.5e-08 Score=85.42 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=22.4
Q ss_pred CCCCEEEEHHHHHCCHHHHHHHHHHHH-CCEEE----CCCCCEEECCCCEEEECC
Q ss_conf 564102202144149899999999840-45788----799977830331559548
Q gi|254780877|r 669 HPYQVVLFDEIEKAHSDVHNILLQVLD-DGRLT----DSQGRTVDFRNTLIIMTS 718 (853)
Q Consensus 669 ~P~sVil~DEiEKah~~v~~~llqild-~G~lt----d~~G~~v~f~n~iii~Ts 718 (853)
++.+-+-++.+.+.-++|++ .+. +..+. -..|+.++|.+-.+.+.-
T Consensus 425 ~~~s~~~~~~v~~~W~~ILe----~lk~~r~~~l~alL~~~~pv~~~~~~l~I~f 475 (541)
T PRK05563 425 NVDSKLTIDNVKKVWKDILE----AFKARRKMVLYAALVTGKLVKCKKGVITINY 475 (541)
T ss_pred CCCCCCCHHHHHHHHHHHHH----HHHHCCCHHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 64441348999989999999----9885254209999855957998799899998
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=1.2e-08 Score=89.29 Aligned_cols=199 Identities=25% Similarity=0.327 Sum_probs=137.9
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCC-CCCCCEEEECCCCCCHHHHHHHHHHHHHC-------CCCCHHH---------
Q ss_conf 998729853333357899999996336-77786689528874077799999998734-------8998444---------
Q gi|254780877|r 170 EEARNGKLDPVIGRDDEMRRAIQVLSR-RTKNNPVLIGDPGVGKTAIIEGLASRIIN-------GDIPESL--------- 232 (853)
Q Consensus 170 e~Ar~GkLDPVIGRe~EI~~~~~iL~r-~~k~n~~lvGe~GvGKtaive~la~~i~~-------~~vp~~l--------- 232 (853)
.+.|--.++-|||-+.-++.+...+.. |--+--++.|.-|||||+++.-||.-+.- |-.++.-
T Consensus 15 ~k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i 94 (600)
T PRK09111 15 RKYRPQTFDDLIGQEAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAI 94 (600)
T ss_pred ECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 10179877663385999999999997298420476457898789999999999966988766689988989988658988
Q ss_pred -CC--CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-
Q ss_conf -57--4378873135421745420245458999999860799---7699963627730266655433588887653124-
Q gi|254780877|r 233 -KG--KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDG---EIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR- 305 (853)
Q Consensus 233 -~~--~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~---~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar- 305 (853)
.| .-|+++|. ++.+|= +-++.|++.+.-.+. --|..|||+||| |-.|-|-|--.|..
T Consensus 95 ~~~~~~d~~e~da------as~~~v--~~~r~~~~~~~~~p~~~~~kv~iidevhml--------s~~afnallktleep 158 (600)
T PRK09111 95 MEGRHVDVIEMDA------ASHTGV--DDIREIIESVRYRPVSARYKVYIIDEVHML--------STAAFNALLKTLEEP 158 (600)
T ss_pred HCCCCCCEEEEEC------CCCCCH--HHHHHHHHHHCCCCCCCCEEEEEEECCCCC--------CHHHHHHHHHHHHCC
T ss_conf 6689987588515------545788--899999986053887775469996001105--------799999999876259
Q ss_pred -CCEEEEEEECHHHHHHHHHCCH-HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf -6604899744899999730011-13202311111577767899999997898654149610158999998633320245
Q gi|254780877|r 306 -GELHCIGATTLDEYRKYIEKDP-ALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITD 383 (853)
Q Consensus 306 -G~l~~IgaTT~~Eyrk~iEkD~-Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~ 383 (853)
.-+.+|=|||. .+ |=| ..-.|-|+-...--+.++...-|..+... .++.|+++||...++.|.==+.|
T Consensus 159 p~~~~fi~att~--~~----k~p~ti~src~~f~~~~~~~~~~~~~l~~i~~~----e~~~~~~~al~~ia~~a~GS~RD 228 (600)
T PRK09111 159 PPHVKFIFATTE--IR----KVPVTVLSRCQRFDLRRIEAEVLAAHLARIAEK----EGVEVEPDALALIARAAEGSVRD 228 (600)
T ss_pred CCCEEEEEECCC--HH----HCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCCCH
T ss_conf 865499996285--34----375899854412010579999999999999986----07686677999999974898421
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 76747789999999998
Q gi|254780877|r 384 RFLPDKAIDLMDEASAR 400 (853)
Q Consensus 384 r~lPDKAIDllDeA~A~ 400 (853)
|..|||.|.|.
T Consensus 229 ------aLSlLDQai~~ 239 (600)
T PRK09111 229 ------GLSLLDQAIAH 239 (600)
T ss_pred ------HHHHHHHHHHC
T ss_conf ------89999999972
No 104
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=99.06 E-value=1.9e-07 Score=79.53 Aligned_cols=215 Identities=19% Similarity=0.289 Sum_probs=151.9
Q ss_pred CCCCHHHHHHHHHHHH----C-CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEH----------H
Q ss_conf 3333578999999963----3-67778668952887407779999999873489984445743788731----------3
Q gi|254780877|r 179 PVIGRDDEMRRAIQVL----S-RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDM----------G 243 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL----~-r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~----------~ 243 (853)
-+.|||++|+++...| . ..+=+|+++-|.+||||||++.-+.+++...---....+..+..+|- .
T Consensus 18 ~i~hRdeqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~ 97 (383)
T TIGR02928 18 RIVHRDEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLV 97 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 46686789999999988750674898725887888987889999999999998622699715899977854684699999
Q ss_pred HHHCCC---------CCCCH-HHHHHHHHHHHHH-HCCCCEEEEECCHHHHCCCCCCCC-----CCCHHHHHH----HHH
Q ss_conf 542174---------54202-4545899999986-079976999636277302666554-----335888876----531
Q gi|254780877|r 244 ALIAGA---------KFRGE-FEERLKSLLCEIR-SEDGEIILFIDELHVLVGAGKTDG-----AMDASNLLK----PSL 303 (853)
Q Consensus 244 ~l~ag~---------~~rg~-~e~r~~~i~~~~~-~~~~~~ilfide~h~~~gaG~~~g-----~~Daan~LK----P~L 303 (853)
.|+.-- .++|= +.+-++.+.+++. +..+-+|..+|||-.|+ -+..+. .+- .|++ -.+
T Consensus 98 ~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv-~~~~d~PAyS~~LY--~L~Ra~~~~~~ 174 (383)
T TIGR02928 98 ELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLV-RKDDDDPAYSKLLY--QLSRARENGDL 174 (383)
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH-CCCCCCHHHHHHHH--HHHHHHHCCCC
T ss_conf 9999851577888898877878999999999983201887999862310221-58888807878853--43310003577
Q ss_pred CCCCEEEEEEECHHHHHHHHHCCHHHHHCCCE--EECCCCCHHHHHHHHHHHHHHH-H-HHCCCCCCHHHHHHHHHHHHH
Q ss_conf 24660489974489999973001113202311--1115777678999999978986-5-414961015899999863332
Q gi|254780877|r 304 ARGELHCIGATTLDEYRKYIEKDPALARRFQS--LLVGEPTVTDTISILRGLKERY-E-QHHKVRISDSALVSAAVLSNR 379 (853)
Q Consensus 304 arG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~--i~V~Eps~~~t~~iL~gl~~~y-E-~~H~V~i~d~al~~av~ls~r 379 (853)
....+-+||.|=--.|+..+. +=-...|++ |.=.+=+.++-..|| ..|- | .||.=-++|++|.-|+.++.|
T Consensus 175 ~~~~vgvIgISND~~f~~~Ld--~RVkSsL~~eei~FpPYdA~eL~~IL---~~R~v~~AF~dGvl~d~VI~lcAA~aAq 249 (383)
T TIGR02928 175 ENAKVGVIGISNDLKFRENLD--PRVKSSLCEEEIVFPPYDAEELRDIL---ENRAVEKAFYDGVLDDGVIPLCAALAAQ 249 (383)
T ss_pred CCCCEEEEEEECCCHHHHHCC--CCEECCCCCCCCEECCCCHHHHHHHH---HHHHHHHCCCCCCCCHHHHHHHHHHHHC
T ss_conf 885348999865714364457--53013248740040798869999999---7203120336885462279999998620
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0245767477899999999987541
Q gi|254780877|r 380 YITDRFLPDKAIDLMDEASARVRMQ 404 (853)
Q Consensus 380 Yi~~r~lPDKAIDllDeA~A~~~i~ 404 (853)
==.| ==||||||=.||=.+.-+
T Consensus 250 ~hGD---AR~AiDLLR~AGe~A~~~ 271 (383)
T TIGR02928 250 EHGD---ARKAIDLLRVAGEIAERE 271 (383)
T ss_pred CCCC---HHHHHHHHHHHHHHHHHC
T ss_conf 6787---899999999876875315
No 105
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.06 E-value=3.4e-10 Score=101.86 Aligned_cols=115 Identities=35% Similarity=0.533 Sum_probs=78.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCC---CCCCHHHHCCCCCEEEEH
Q ss_conf 98726786168899999998723776530022447740345320130477112035667---742113221564102202
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG---GALTEAVRRHPYQVVLFD 677 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~g---g~Lte~vr~~P~sVil~D 677 (853)
.||.||+|+|||.+|+++|..+ ...++.++.+++.. .|+|..+. ..+..+-+..| ||+++|
T Consensus 1 iLl~GppGtGKT~~a~~la~~~---~~~~~~v~~~~~~~------------~~~g~~~~~i~~~f~~a~~~~p-~Il~iD 64 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL---GAPFIEISGSELVS------------KYVGESEKRLRELFEAAKKLAP-CVIFID 64 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH---CCCCEECCCCCCCC------------CCCCHHHHHHHHHHHHHHHCCC-CEEEEC
T ss_conf 9878999999999999999997---89853324201222------------3345068889999999997499-189831
Q ss_pred HHHHCCH-----------HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCH
Q ss_conf 1441498-----------99999999840457887999778303315595485126876403267999999999862885
Q gi|254780877|r 678 EIEKAHS-----------DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKP 746 (853)
Q Consensus 678 EiEKah~-----------~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~p 746 (853)
|+|.-.+ .+.+.||+.+|.- ..+..+.++|+|||- . ..+.|
T Consensus 65 e~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~--------~~~~~~v~~I~tTN~--------~------------~~ld~ 116 (131)
T pfam00004 65 EIDALAGSRGSGGDSESRRVVNQLLTELDGF--------TSSLSKVIVIAATNR--------P------------DKLDP 116 (131)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC--------CCCCCCEEEEEECCC--------H------------HHCCH
T ss_conf 1677751678888875132687899998502--------246887699997599--------0------------44997
Q ss_pred HHH-CCCCCEEECC
Q ss_conf 772-6668158628
Q gi|254780877|r 747 EFL-NRLDEIILFE 759 (853)
Q Consensus 747 efl-nRid~iv~F~ 759 (853)
.++ +|+|.+|.|.
T Consensus 117 al~r~Rfd~~i~~p 130 (131)
T pfam00004 117 ALLRGRFDRIIEFP 130 (131)
T ss_pred HHHCCCCEEEEEEC
T ss_conf 79628332899806
No 106
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.06 E-value=1.9e-09 Score=95.75 Aligned_cols=164 Identities=24% Similarity=0.423 Sum_probs=102.9
Q ss_pred HHHHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 76745948999999999987-------41012365665128987267861688999999987237765300224477403
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRR-------FRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME 639 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~-------~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e 639 (853)
-+-|.|+++|.+.+...+-- .+.|-+- |-| .||.||+|+|||.|||++|..- .-+++.+..|||.|
T Consensus 151 F~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~---PkG-vLL~GPPGtGKTlLAkAvAgEa---~vpF~~~sgsef~e 223 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI---PKG-VLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE 223 (644)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCC---CCC-EEEECCCCCCHHHHHHHHHCCC---CCEEEEEEHHHHHH
T ss_conf 1040897899999999999812979999749979---985-1777989987789999986455---98089978477302
Q ss_pred CCCCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCEEEEHHHHHC-----------CH---HHHHHHHHHHHCCEEECCC
Q ss_conf 45320130477112035667--74211322156410220214414-----------98---9999999984045788799
Q gi|254780877|r 640 KHSVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQVVLFDEIEKA-----------HS---DVHNILLQVLDDGRLTDSQ 703 (853)
Q Consensus 640 ~~~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sVil~DEiEKa-----------h~---~v~~~llqild~G~ltd~~ 703 (853)
. |||-+.. -.|-+.-|++.-|||++|||+-- |. .++|-||-=|| |. ..+
T Consensus 224 ~------------~vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmD-Gf-~~~- 288 (644)
T PRK10733 224 M------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD-GF-EGN- 288 (644)
T ss_pred E------------EEECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CC-CCC-
T ss_conf 2------------25306899999999999669979999532203666789888983288878999999954-88-887-
Q ss_pred CCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9778303315595485126876403267999999999862885772666815862889989999999999999
Q gi|254780877|r 704 GRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGR 776 (853)
Q Consensus 704 G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~ 776 (853)
.+.|+|..+|- .+....++ .|| +|+|..|.+..-+......|++.+++.
T Consensus 289 ------~~ViviaATNr--------pd~LD~AL-------lRP---GRFDr~I~V~lPd~~~R~~ILkvh~~~ 337 (644)
T PRK10733 289 ------EGIIVIAATNR--------PDVLDPAL-------LRP---GRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred ------CCEEEEEECCC--------CCCCCHHH-------HCC---CCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf ------87699962699--------75547777-------168---886559997798988999999999648
No 107
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.06 E-value=2.5e-09 Score=94.76 Aligned_cols=227 Identities=26% Similarity=0.449 Sum_probs=147.8
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCHHHHC-
Q ss_conf 76745948999999999987410123656651289872678616889999999872-------3776530022447740-
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL-------FDDENSMIRIDMSEYM- 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~l-------f~~~~~lir~dMsey~- 638 (853)
-+.||||+.||+++..- +.+|= |. -.++-||+|||||..|+..=|.- |...-+|+=.|-...-
T Consensus 154 f~EiVGQerAI~aLlaK-------~aSPf-PQ-HiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRW 224 (616)
T TIGR02903 154 FSEIVGQERAIKALLAK-------LASPF-PQ-HIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRW 224 (616)
T ss_pred CCCCCCHHHHHHHHHHH-------HCCCC-CC-CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 76433346899999976-------31888-66-07855733884789999987621368744761137857515762667
Q ss_pred CCCC-CCHHHCC--CCHHCCCC-----C------CCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCC
Q ss_conf 3453-2013047--71120356-----6------7742113221564102202144149899999999840457887999
Q gi|254780877|r 639 EKHS-VSRLIGS--PPGYVGYE-----E------GGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQG 704 (853)
Q Consensus 639 e~~~-vs~LiGa--ppGYvG~~-----~------gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G 704 (853)
|+-. .+=|+|| -|=|=|.. . .|+-|+| | -.|++.|||=--.|=.+|-||.||+|=
T Consensus 225 DPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~A---H-GGvLFIDEIGELD~lLQnKLLKVLEDK------- 293 (616)
T TIGR02903 225 DPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDA---H-GGVLFIDEIGELDPLLQNKLLKVLEDK------- 293 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC---C-CCEEEEECHHHHHHHHHHHHHHHHCCC-------
T ss_conf 74101477677625765567640110478798989871004---7-756765021122278763244432264-------
Q ss_pred CEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHC---------------------CHHHHCCCCCEEECCCCCH
Q ss_conf 7783033155954851268764032679999999998628---------------------8577266681586288998
Q gi|254780877|r 705 RTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAF---------------------KPEFLNRLDEIILFEKLRK 763 (853)
Q Consensus 705 ~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f---------------------~peflnRid~iv~F~~l~~ 763 (853)
+|.|+.+. +|...+.+=+=+|+.| .|.|..|+-| |.|.||+.
T Consensus 294 -rV~F~SsY---------------YDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaE-vfFePL~p 356 (616)
T TIGR02903 294 -RVEFSSSY---------------YDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPLTP 356 (616)
T ss_pred -EEEEEECC---------------CCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCE-EECCCCCH
T ss_conf -36653212---------------48753786558888522688825687266158824405123301431-32179887
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99999999999999999985798999988999999970898220621579999987334999999708688978899999
Q gi|254780877|r 764 EDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFV 843 (853)
Q Consensus 764 ~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~ 843 (853)
.++..|+..-- ..+++.+.+.|.+.|+. |.-+ | |---.++-.-- -++.+--.....+++.|.|+.
T Consensus 357 ~dI~~Iv~~AA---------~klnv~L~~gV~e~Ia~--YTie-G-RkAvnILAD~Y--g~~ly~~~~~~~~~d~~~I~~ 421 (616)
T TIGR02903 357 EDIKEIVLNAA---------EKLNVKLAEGVEELIAR--YTIE-G-RKAVNILADVY--GYALYKKAEALKEEDKVTITA 421 (616)
T ss_pred HHHHHHHHHHH---------HHCCCCCCCCHHHHHHH--CCCC-C-HHHHHHHHHHH--HHHHHCCCCCCCCCCCEEEEH
T ss_conf 89999999988---------86177000364878721--4713-1-12223465467--676530455567777426618
Q ss_pred EC
Q ss_conf 89
Q gi|254780877|r 844 DD 845 (853)
Q Consensus 844 ~~ 845 (853)
++
T Consensus 422 ~d 423 (616)
T TIGR02903 422 DD 423 (616)
T ss_pred HH
T ss_conf 67
No 108
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.06 E-value=3.3e-09 Score=93.78 Aligned_cols=201 Identities=26% Similarity=0.459 Sum_probs=123.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCC-----CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 767459489999999999874101236566-----512898726786168899999998723776530022447740345
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQR-----PMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~-----p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~ 641 (853)
-..||||++|-.+-.-.+.- |.+|.+ |- ..||.||||+|||.+||+||... ...++-+
T Consensus 120 ~ddViGqEeAK~kcrli~~y----LenPe~Fg~WAPk-nVLFyGppGTGKTm~Akalane~---kvp~l~v--------- 182 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEY----LENPERFGDWAPK-NVLFYGPPGTGKTMMAKALANEA---KVPLLLV--------- 182 (368)
T ss_pred HHHHHCHHHHHHHHHHHHHH----HHCHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHCCC---CCCEEEE---------
T ss_conf 76641639888887999999----6496876345754-16877899964879999872545---7854871---------
Q ss_pred CCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCEEEEHHHHHCC------------HHHHHHHHHHHHCCEEECCCCCEE
Q ss_conf 320130477112035667--742113221564102202144149------------899999999840457887999778
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQVVLFDEIEKAH------------SDVHNILLQVLDDGRLTDSQGRTV 707 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sVil~DEiEKah------------~~v~~~llqild~G~ltd~~G~~v 707 (853)
.++.||| -|||-+.- ..|-+.-++.--|||++||++--. .+|.|.||.=|| |. ..+.|
T Consensus 183 kat~liG---ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-gi-~eneG--- 254 (368)
T COG1223 183 KATELIG---EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-GI-KENEG--- 254 (368)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CC-CCCCC---
T ss_conf 1688888---7743598999999998875198499840024555304578864549999999998501-74-45775---
Q ss_pred ECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 30331559548512687640326799999999986288577266681586288998999999999999999999857989
Q gi|254780877|r 708 DFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS 787 (853)
Q Consensus 708 ~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~ 787 (853)
.+.|..+|- .+ .+-|...+|+.+-|-|.--+.++...|++.+++. -.+.
T Consensus 255 ----VvtIaaTN~--------p~------------~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~-------~Plp 303 (368)
T COG1223 255 ----VVTIAATNR--------PE------------LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK-------FPLP 303 (368)
T ss_pred ----EEEEEECCC--------HH------------HCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH-------CCCC
T ss_conf ----699950598--------46------------5078888655650656488858999999998985-------8976
Q ss_pred EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99988999999970898220621579999987334999999708
Q gi|254780877|r 788 MDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQ 831 (853)
Q Consensus 788 l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~ 831 (853)
+... .++++.+ ...+..|.|+ ++-+.+.|-+.|+.+
T Consensus 304 v~~~---~~~~~~~--t~g~SgRdik---ekvlK~aLh~Ai~ed 339 (368)
T COG1223 304 VDAD---LRYLAAK--TKGMSGRDIK---EKVLKTALHRAIAED 339 (368)
T ss_pred CCCC---HHHHHHH--HCCCCCHHHH---HHHHHHHHHHHHHHC
T ss_conf 5568---9999998--4787720689---999999999998713
No 109
>CHL00176 ftsH cell division protein; Validated
Probab=99.05 E-value=2.5e-09 Score=94.83 Aligned_cols=163 Identities=26% Similarity=0.447 Sum_probs=108.1
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCC--------CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 767459489999999999874101236566--------512898726786168899999998723776530022447740
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQR--------PMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~--------p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
-+-|.|+++|.+.+...+-- |++|.| |-| .||+||+|+|||.|||++|..- .-+++.+.-|||.
T Consensus 176 F~DVaG~~eaK~el~Eivdf----Lk~P~k~~~~Gak~PkG-vLL~GpPGTGKTlLAkAvAgEa---~vpF~~~sgs~F~ 247 (631)
T CHL00176 176 FNDVAGVEEAKEELEEVVTF----LKKPERFTAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFV 247 (631)
T ss_pred CCCCCCCHHHHHHHHHHHHH----HCCHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHCCC---CCCEEEEEHHHHH
T ss_conf 53228858999999999998----35958876449968965-8988989987889999985655---8846998837855
Q ss_pred CCCCCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCEEEEHHHHHC-----------CHH---HHHHHHHHHHCCEEECC
Q ss_conf 345320130477112035667--74211322156410220214414-----------989---99999998404578879
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQVVLFDEIEKA-----------HSD---VHNILLQVLDDGRLTDS 702 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sVil~DEiEKa-----------h~~---v~~~llqild~G~ltd~ 702 (853)
|. |||-+.. -.|-+.-|++.-|||+.|||+-- |.+ .+|-||.=|| |. ..+
T Consensus 248 e~------------~vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emD-Gf-~~~ 313 (631)
T CHL00176 248 EM------------FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMD-GF-EGN 313 (631)
T ss_pred HH------------HCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-CC-CCC
T ss_conf 64------------21555899999999998639969998710120114789888985089999999999842-88-878
Q ss_pred CCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99778303315595485126876403267999999999862885772666815862889989999999999999
Q gi|254780877|r 703 QGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGR 776 (853)
Q Consensus 703 ~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~ 776 (853)
.+.|+|..||- .+....++ .|| +|+|..|....-+......|++.+++.
T Consensus 314 -------~gViViaATNr--------pd~LDpAL-------lRP---GRFDR~I~V~lPD~~gR~~IL~vh~k~ 362 (631)
T CHL00176 314 -------KGVIVIAATNR--------IDILDAAL-------LRP---GRFDRQVTVSLPDFEGRLDILKVHARN 362 (631)
T ss_pred -------CCEEEEEECCC--------CCCCCHHH-------CCC---CCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf -------88699982588--------55456866-------268---877549982698989999999999707
No 110
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.04 E-value=2.2e-09 Score=95.28 Aligned_cols=214 Identities=23% Similarity=0.335 Sum_probs=145.9
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC-CCCHHHCCCEEEEEEHH
Q ss_conf 44356998729853333357899999996336777866895288740777999999987348-99844457437887313
Q gi|254780877|r 165 CRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIING-DIPESLKGKRLMALDMG 243 (853)
Q Consensus 165 ~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~-~vp~~l~~~~i~~ld~~ 243 (853)
|.=|||+.|=..+|-+||=|+=|+-|---||.-+=..+|+-|+|||||||=+. |+..=+.. ...++=-+...+++|.+
T Consensus 52 t~PL~Ek~RP~SF~EIiGQe~GI~ALKAALCGPNPQHVIiYGPPGVGKTAAAR-LVLeeAKk~~~SPFke~A~FVEiDAT 130 (532)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAAR-LVLEEAKKNPASPFKEEAAFVEIDAT 130 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 78877466777633256735568999986068689638987886961789999-99998650875378988668985051
Q ss_pred HHHCCCCCCCHHHHH------HHHHHHHH--------------------HHCCCCEEEEECCH---HHH-----------
Q ss_conf 542174542024545------89999998--------------------60799769996362---773-----------
Q gi|254780877|r 244 ALIAGAKFRGEFEER------LKSLLCEI--------------------RSEDGEIILFIDEL---HVL----------- 283 (853)
Q Consensus 244 ~l~ag~~~rg~~e~r------~~~i~~~~--------------------~~~~~~~ilfide~---h~~----------- 283 (853)
.+ -|-|| +-++.|=+ .++.|. ||||||| |=+
T Consensus 131 T~--------RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGG-vLFIDEIGELHP~~MNKLLKVLED 201 (532)
T TIGR02902 131 TA--------RFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGG-VLFIDEIGELHPVQMNKLLKVLED 201 (532)
T ss_pred CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 03--------602146666567761585333765457885575877763202586-551212466582435314113302
Q ss_pred ----C-CCCCCCCCCCHHHHHHHHHCCC---CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf ----0-2666554335888876531246---6048997448999997300111320231111157776789999999789
Q gi|254780877|r 284 ----V-GAGKTDGAMDASNLLKPSLARG---ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKE 355 (853)
Q Consensus 284 ----~-gaG~~~g~~Daan~LKP~LarG---~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~ 355 (853)
+ .|-=++..-..=+-.+=.-..| ++|.|||||- +==|=.|||-.|==-|-=.+...||-..|=+.-.+
T Consensus 202 RKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR----~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~Aae 277 (532)
T TIGR02902 202 RKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTR----NPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNAAE 277 (532)
T ss_pred CCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC----CCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 22000012358777865427899720678734012133369----87767834650522677168887899999876565
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 865414961015899999863332024576747789999999998754
Q gi|254780877|r 356 RYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRM 403 (853)
Q Consensus 356 ~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i 403 (853)
+- ++.+..+|++..+.+|. + =--||.|+==||-.+--
T Consensus 278 KI----g~~l~~~Al~~I~~Ya~----n---GREAvN~~QLAaG~a~~ 314 (532)
T TIGR02902 278 KI----GLNLEKEALDLIAKYAS----N---GREAVNLVQLAAGIALG 314 (532)
T ss_pred HC----CCCCCHHHHHHHHHHHC----C---CCHHHHHHHHHHHHEEC
T ss_conf 30----46547547999998740----5---40677899997314012
No 111
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=99.04 E-value=3.6e-09 Score=93.50 Aligned_cols=180 Identities=27% Similarity=0.356 Sum_probs=109.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH-
Q ss_conf 6745948999999999987410123656651289872678616889999999872377653002244774034532013-
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL- 646 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L- 646 (853)
+.|+||+.|..++.-+ -+|-. .+|+.||+|+|||.+|+.++..|=. |-.-.+-|.+.-||++.+
T Consensus 3 ~di~GQ~~akrAl~iA----aaG~H-------~lLl~GpPG~GKTmlA~rl~~iLP~----l~~~e~le~~~i~S~~g~~ 67 (207)
T pfam01078 3 ADVKGQEQAKRALEIA----AAGGH-------NLLMIGPPGSGKTMLAKRLPGILPP----LTEQEALEVTAIHSVAGLG 67 (207)
T ss_pred HHHCCCHHHHHHHHHH----HCCCC-------CEEEECCCCCCHHHHHHHHHCCCCC----CCHHHHHHHHHHHCCCCCC
T ss_conf 6863859999999998----54787-------5897889980299999763014899----8789988777642303687
Q ss_pred -----HCCCC-----------HHCCCC---CCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCC-CCE
Q ss_conf -----04771-----------120356---6774211322156410220214414989999999984045788799-977
Q gi|254780877|r 647 -----IGSPP-----------GYVGYE---EGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQ-GRT 706 (853)
Q Consensus 647 -----iGapp-----------GYvG~~---~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~-G~~ 706 (853)
+..|| +.||-+ .-|.+|- --..|++|||+-.-+++|++.|+|.|++|+++-++ |.+
T Consensus 68 ~~~~l~~~rPfr~PHhs~s~~aliGGg~~~~PGeIsl----AH~GVLFLDE~~Ef~~~vle~LrqpLE~~~v~IsRa~~~ 143 (207)
T pfam01078 68 GDGGLIRRRPFRAPHHSASAAALVGGGSIPRPGEISL----AHNGVLFLDELPEFSRRVLESLRQPLEDGEITISRARAK 143 (207)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEE----CCCCEEEECCHHHCCHHHHHHHHHHHCCCCEEEEECCCE
T ss_conf 7777445798657887643633226888899970666----368788847646539889999987660494899956758
Q ss_pred EEC-CCCEEEECCCHHHHHHHCCHH---HHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 830-331559548512687640326---799999999986288577266681586288998999
Q gi|254780877|r 707 VDF-RNTLIIMTSNLGAEYLIEDGD---SVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDM 766 (853)
Q Consensus 707 v~f-~n~iii~TsN~G~~~~~~~~~---~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~ 766 (853)
+.| .+.++|+++|-=--....+.+ .-...-...-...++-.+++|||-.|...+++.+++
T Consensus 144 ~~~PA~f~LvaA~NPCpCG~~~~~~~~C~C~~~~~~~Y~~rlSgPllDRiDl~v~~~~~~~~~l 207 (207)
T pfam01078 144 VTFPARFQLVAAMNPCPCGYLGDPDKRCRCTPRQIRRYLSRLSGPLLDRIDLQVEVPRLSAEEL 207 (207)
T ss_pred EEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCEEEEEECCCCCHHHC
T ss_conf 9860434888850577778788999975788999999987645220206878997789995769
No 112
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.3e-09 Score=92.84 Aligned_cols=162 Identities=28% Similarity=0.519 Sum_probs=114.0
Q ss_pred HHHCCHHHHHHHHHHHHHHH--------HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 67459489999999999874--------1012365665128987267861688999999987237765300224477403
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRF--------RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME 639 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~--------~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e 639 (853)
+-|=|-++-|+.+-.++-.. +.|+.. |-|++| .||+|+|||-|||++|..- .-.|||.--||+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~P---PKGVLL-YGPPGTGKTLLAkAVA~~T---~AtFIrvvgSEl-- 221 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDP---PKGVLL-YGPPGTGKTLLAKAVANQT---DATFIRVVGSEL-- 221 (406)
T ss_pred HHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCC---CCCEEE-ECCCCCCHHHHHHHHHHCC---CCEEEEECCHHH--
T ss_conf 5335889999999998403366888999749999---971276-6899975889999987205---866999421999--
Q ss_pred CCCCCHHHCCCCHHCCCCCCCCCCH----HHHCCCCCEEEEHHHHH-----------CCHHHHHHHHHHHHC--CEEECC
Q ss_conf 4532013047711203566774211----32215641022021441-----------498999999998404--578879
Q gi|254780877|r 640 KHSVSRLIGSPPGYVGYEEGGALTE----AVRRHPYQVVLFDEIEK-----------AHSDVHNILLQVLDD--GRLTDS 702 (853)
Q Consensus 640 ~~~vs~LiGappGYvG~~~gg~Lte----~vr~~P~sVil~DEiEK-----------ah~~v~~~llqild~--G~ltd~ 702 (853)
|.+.|| ||..|.. --|.+--|+|++|||+- +..+|+..+||+|.+ |+ |.
T Consensus 222 ---VqKYiG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF--D~ 287 (406)
T COG1222 222 ---VQKYIG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF--DP 287 (406)
T ss_pred ---HHHHHC---------CCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CC
T ss_conf ---999834---------1169999999987414984999831122311113688885099999999999860588--97
Q ss_pred CCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99778303315595485126876403267999999999862885772666815862889989999999999999
Q gi|254780877|r 703 QGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGR 776 (853)
Q Consensus 703 ~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~ 776 (853)
. .|.=|||-+|= .+....++ .+| +|+|..|-|-.-+.....+|++..-..
T Consensus 288 ~------~nvKVI~ATNR--------~D~LDPAL-------LRP---GR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 288 R------GNVKVIMATNR--------PDILDPAL-------LRP---GRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred C------CCEEEEEECCC--------CCCCCHHH-------CCC---CCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 8------87689985588--------55557665-------088---754530116898978999999987621
No 113
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.03 E-value=2.2e-08 Score=87.10 Aligned_cols=210 Identities=21% Similarity=0.265 Sum_probs=128.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH----------CCCCCCCCCCCHHHH
Q ss_conf 6745948999999999987410123656651289872678616889999999872----------377653002244774
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL----------FDDENSMIRIDMSEY 637 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~l----------f~~~~~lir~dMsey 637 (853)
..|+||+++..++.-+. -+|+ +|-.|..||.|+|||.++++||+.| |+... .----|+..
T Consensus 12 ~aIvGQe~~k~aLll~a-------v~p~--iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p-~~p~~~~~~ 81 (347)
T CHL00081 12 TAIVGQEEMKLALLLNV-------IDPK--IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDP-RDPDLMSDE 81 (347)
T ss_pred HHHCCHHHHHHHHHHHH-------CCCC--CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCC-CCCCCCCHH
T ss_conf 06538499999999982-------5788--7869987899874999999999857874220688767898-981002426
Q ss_pred -------CC--------------CCCC--CHHHCCCCHHC----C--CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHH
Q ss_conf -------03--------------4532--01304771120----3--566774211322156410220214414989999
Q gi|254780877|r 638 -------ME--------------KHSV--SRLIGSPPGYV----G--YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHN 688 (853)
Q Consensus 638 -------~e--------------~~~v--s~LiGappGYv----G--~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~ 688 (853)
.+ +..+ -|++|+=--.- | -=+.|.|.++= ..|++.|||.-+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~----rGiLyvDEINll~d~~v~ 157 (347)
T CHL00081 82 VRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKAN----RGILYVDEVNLLDDHLVD 157 (347)
T ss_pred HHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCC----CCEEEEEHHHHHHHHHHH
T ss_conf 6654314666752114686253688885230114000998984587115653122203----885886145432379999
Q ss_pred HHHHHHHCCEEEC-CCCCEEEC-CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECC-CCCHHH
Q ss_conf 9999840457887-99977830-33155954851268764032679999999998628857726668158628-899899
Q gi|254780877|r 689 ILLQVLDDGRLTD-SQGRTVDF-RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFE-KLRKED 765 (853)
Q Consensus 689 ~llqild~G~ltd-~~G~~v~f-~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~-~l~~~~ 765 (853)
.||+++.+|+.+- ..|..+.. ...++|-|.|= ++ +-++|.++.|+.-.+... +.+.++
T Consensus 158 ~LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NP---------eE----------geLrp~llDRF~l~v~v~~~~~~e~ 218 (347)
T CHL00081 158 ILLDSAASGWNTVEREGISIRHPARFVLIGSGNP---------EE----------GELRPQLLDRFGMHAEIRTVKDPEL 218 (347)
T ss_pred HHHHHHHCCEEEECCCCEEECCCCCEEEEECCCC---------CC----------CCCCHHHHHHEEEEEECCCCCCHHH
T ss_conf 9999985580898046423305750068855786---------55----------6748888826322674588789899
Q ss_pred HHHHHHHHHH-----------------HHHHHH-H--HCCCEEEECHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 9999999999-----------------999999-8--579899998899999997089822062157
Q gi|254780877|r 766 MAKIVRIQLG-----------------RVLSLI-K--ERNISMDFDDQVIDWLSCRGYDPSYGARPL 812 (853)
Q Consensus 766 ~~~i~~~~l~-----------------~l~~~l-~--~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l 812 (853)
...|++..+. .+..++ . +.=-.+.++++.+.|+++.+- .+|.-+.
T Consensus 219 R~eiv~~r~~f~~~p~~f~~~~~~~~~~l~~~I~~Ar~~L~~V~v~~~~~~~i~~~~~--~~~v~g~ 283 (347)
T CHL00081 219 RVKIVEQRSNFDKNPENFREKYSESQDALKTQIILARQLLPNVEIDYDLRVKISQICS--ELDVDGL 283 (347)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH--HHCCCCC
T ss_conf 9999999997651969999998878999999999998644773559999999999999--8489987
No 114
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.02 E-value=1.6e-08 Score=88.19 Aligned_cols=209 Identities=21% Similarity=0.263 Sum_probs=128.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHCCCCCCC
Q ss_conf 767459489999999999874101236566512898726786168899999998723776--530022447740345320
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE--NSMIRIDMSEYMEKHSVS 644 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~--~~lir~dMsey~e~~~vs 644 (853)
-.++.|-++-++.++.++.-.-.| ++|- +.+..||||+|||-++|.+.+.|=... -..+.+|+..+..++.+-
T Consensus 29 P~~l~~Re~Ei~~l~~~l~~~l~g----~~~~-n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~ 103 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG----SRPS-NVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAIL 103 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC----CCCC-CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
T ss_conf 998988599999999999999759----9998-47998899998999999999999974689659999696689899999
Q ss_pred -----HHHCCCCHHCCCCCCCCCCHHH-----HCCCCCEEEEHHHHHCC-HHHHHHHHHHHHCCEEECCCCCEEECCCCE
Q ss_conf -----1304771120356677421132-----21564102202144149-899999999840457887999778303315
Q gi|254780877|r 645 -----RLIGSPPGYVGYEEGGALTEAV-----RRHPYQVVLFDEIEKAH-SDVHNILLQVLDDGRLTDSQGRTVDFRNTL 713 (853)
Q Consensus 645 -----~LiGappGYvG~~~gg~Lte~v-----r~~P~sVil~DEiEKah-~~v~~~llqild~G~ltd~~G~~v~f~n~i 713 (853)
.|.|.++..-|+... .+-+.+ .+..+.||++|||++-- .+-.++|++++.-.. . ..-..+.
T Consensus 104 ~~i~~~L~~~~~p~~G~s~~-~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~---~----~~~~~~~ 175 (394)
T PRK00411 104 SEIARSLFGHPPPSSGLSFD-ELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHE---E----YPGARIG 175 (394)
T ss_pred HHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC---C----CCCCCEE
T ss_conf 99999956998987787899-99999999861669758999965540203665089999985402---2----6887389
Q ss_pred EEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 59548512687640326799999999986288577266681586288998999999999999999999857989999889
Q gi|254780877|r 714 IIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQ 793 (853)
Q Consensus 714 ii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~ 793 (853)
+|+-||- ....+.+.+.++..|.| +.|.|.|++.+++..|+...++.. +. .| .+++.
T Consensus 176 vI~IsN~---------~~~~~~Ldprv~S~l~~-------~~i~F~PY~~~qL~~IL~~R~~~a---f~-~g---v~~~~ 232 (394)
T PRK00411 176 VIGISSD---------LTFLYILDPRVKSVFGP-------EEIVFPPYTADEIFDILKDRVEEG---FY-PG---VVSDE 232 (394)
T ss_pred EEEEECC---------CCHHHHHHHHHHCCCCC-------EEEEECCCCHHHHHHHHHHHHHHC---CC-CC---CCCHH
T ss_conf 9999768---------71776640777502786-------289858999899999999999841---45-56---78978
Q ss_pred HHHHHHHCCCCCCCCCHH
Q ss_conf 999999708982206215
Q gi|254780877|r 794 VIDWLSCRGYDPSYGARP 811 (853)
Q Consensus 794 ~~~~l~~~~~~~~~GaR~ 811 (853)
++.+++...-...--||-
T Consensus 233 ~i~~~A~~~a~~~GDaR~ 250 (394)
T PRK00411 233 VLELIADLTGREHGDARV 250 (394)
T ss_pred HHHHHHHHHHHCCCCHHH
T ss_conf 999999998550475899
No 115
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=8.3e-09 Score=90.54 Aligned_cols=166 Identities=23% Similarity=0.415 Sum_probs=96.4
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHCCCCC
Q ss_conf 767459489999999999874101236566512898726786168899999998723776530----0224477403453
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSM----IRIDMSEYMEKHS 642 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~l----ir~dMsey~e~~~ 642 (853)
-+.||||+.+++.+.+++...|. | -++||.||.|+||+.+|..+|+.++.....- .++.-...-+-|-
T Consensus 3 F~~iiGq~~~~~~L~~ai~~~rl-------~-hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~ 74 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIEQNRI-------A-PAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEE
T ss_conf 33125949999999999985996-------7-448778999832999999999998578999976655875189997788
Q ss_pred CC-------HHHC-----------CCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEE
Q ss_conf 20-------1304-----------7711203566774211322156----410220214414989999999984045788
Q gi|254780877|r 643 VS-------RLIG-----------SPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLT 700 (853)
Q Consensus 643 vs-------~LiG-----------appGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~lt 700 (853)
+. +++. ..|..++-++=-.+.+.+..+| |.|+++|+.|+.+.+-.|.||-.|+|=
T Consensus 75 i~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEEP--- 151 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP--- 151 (314)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC---
T ss_conf 60562003454557789876530268777879999999999731885688479998897871999999999861478---
Q ss_pred CCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 7999778303315595485126876403267999999999862885772666815862889989999999999
Q gi|254780877|r 701 DSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQ 773 (853)
Q Consensus 701 d~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~ 773 (853)
++ +++|+.|+|.. ...|-...|. .+|.|+||+.+++.+++...
T Consensus 152 -~~-------~~fILit~~~~---------------------~lLpTI~SRC-Q~i~F~~l~~~~i~~~L~~~ 194 (314)
T PRK07399 152 -GN-------GTLILIAPSPE---------------------SLLPTIVSRC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred -CC-------CEEEEEECCHH---------------------HCCHHHHCCC-EEEECCCCCHHHHHHHHHHC
T ss_conf -78-------56999979936---------------------4914664187-56338998999999999971
No 116
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.99 E-value=5.4e-08 Score=83.93 Aligned_cols=216 Identities=22% Similarity=0.375 Sum_probs=164.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
..||||..|+..+.+.|... ...+- +.|..|-|||||--.||++-+.=--.++.|+.+||+-.-|.-.=|-|+
T Consensus 223 ~~iIG~S~am~~ll~~i~~V----A~Sd~---tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVV----AKSDS---TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred CCCCCCCHHHHHHHHHHHHH----HCCCC---EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 56230699999999999987----26898---079845888538999999987375557986663122253788888874
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC---CCCCEEECCCCEEEEC
Q ss_conf 47711203566774211322156-------4102202144149899999999840457887---9997783033155954
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD---SQGRTVDFRNTLIIMT 717 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd---~~G~~v~f~n~iii~T 717 (853)
| |+. |.-|.|+..++ .+-+++|||---.+.++--||.+|.+|.+.- .+-.+|| .=||.-
T Consensus 296 G-------HeK-GAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVD---VRiIAA 364 (550)
T COG3604 296 G-------HEK-GAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVD---VRVIAA 364 (550)
T ss_pred C-------CCC-CCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEE---EEEEEC
T ss_conf 5-------332-23335101467635655797576022036787788999999863652534799636777---899821
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCEEEC--CCCC--HHHHHHHHHHHHHHHHHHHHHCCC-EEEEC
Q ss_conf 85126876403267999999999-862885772666815862--8899--899999999999999999985798-99998
Q gi|254780877|r 718 SNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEIILF--EKLR--KEDMAKIVRIQLGRVLSLIKERNI-SMDFD 791 (853)
Q Consensus 718 sN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~iv~F--~~l~--~~~~~~i~~~~l~~l~~~l~~~~i-~l~~~ 791 (853)
+|- .+.+++ ...|+..+.-|++ ++|. -||- ++|+.-.+..+++++..+ .|. .+.++
T Consensus 365 TNR--------------DL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~---~gr~~l~ls 426 (550)
T COG3604 365 TNR--------------DLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRR---LGRAILSLS 426 (550)
T ss_pred CCH--------------HHHHHHHCCCCHHHHHHCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCCCCCC
T ss_conf 353--------------09999874951554532102-001378983458866799999999999886---397640339
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 899999997089822062157999998733
Q gi|254780877|r 792 DQVIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 792 ~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
++|.+.|.+ |+---..|.|...|++.+.
T Consensus 427 ~~Al~~L~~--y~wPGNVRELen~veRavl 454 (550)
T COG3604 427 AEALELLSS--YEWPGNVRELENVVERAVL 454 (550)
T ss_pred HHHHHHHHC--CCCCCCHHHHHHHHHHHHH
T ss_conf 899999973--9999719999989999999
No 117
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.99 E-value=7.3e-08 Score=82.88 Aligned_cols=187 Identities=25% Similarity=0.343 Sum_probs=114.3
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHH---CCCCC---CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH
Q ss_conf 87298533333578999999963---36777---8668952887407779999999873489984445743788731354
Q gi|254780877|r 172 ARNGKLDPVIGRDDEMRRAIQVL---SRRTK---NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL 245 (853)
Q Consensus 172 Ar~GkLDPVIGRe~EI~~~~~iL---~r~~k---~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l 245 (853)
-|-..++-.||-++=.++ +.+. +++++ ..++|-|+||.|||+++.-+|..+-.+ .++ .+-.++
T Consensus 19 lRP~~l~efiGQ~~i~~~-L~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~--------~~~--tsGP~l 87 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--------IRI--TSGPAL 87 (328)
T ss_pred CCCCCHHHCCCHHHHHHH-HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC--------CEE--CCCCCC
T ss_conf 598857663595999999-999999999649998805765889988999999999986888--------156--245001
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--------------------
Q ss_conf 217454202454589999998607997699963627730266655433588887653124--------------------
Q gi|254780877|r 246 IAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-------------------- 305 (853)
Q Consensus 246 ~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-------------------- 305 (853)
- -.| -+-+++.-+ +.+-||||||||-+= -.+-.+|=|++.-
T Consensus 88 e----k~~----DL~~iLt~l---~~~dvLFIDEIHRl~--------~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L 148 (328)
T PRK00080 88 E----KAG----DLAALLTNL---EEGDVLFIDEIHRLS--------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred C----CHH----HHHHHHHHC---CCCCEEEEHHHHHCC--------HHHHHHHHHHHHHCEEEEEECCCCCCEEEECCC
T ss_conf 6----747----899999608---878767650653248--------889988579877523457864786532455589
Q ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHCCCEEE-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 66048997448999997300111320231111-15777678999999978986541496101589999986333202457
Q gi|254780877|r 306 GELHCIGATTLDEYRKYIEKDPALARRFQSLL-VGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDR 384 (853)
Q Consensus 306 G~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~-V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r 384 (853)
-.+..|||||-..- =-+.|-.||-.+. .+.=+.++-..|++.-...+ +|.+++++....++-| |
T Consensus 149 ~pFTLIGATTr~g~-----Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l----~i~i~~~~~~eIA~rS------R 213 (328)
T PRK00080 149 PPFTLIGATTRAGL-----LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL----GIEIDEEGALEIARRS------R 213 (328)
T ss_pred CCEEEEECCCCCCC-----CCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHC------C
T ss_conf 98347401367665-----7767897579336634589999999999999983----9887899999999863------8
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 6747789999999998754
Q gi|254780877|r 385 FLPDKAIDLMDEASARVRM 403 (853)
Q Consensus 385 ~lPDKAIDllDeA~A~~~i 403 (853)
--|--|.-||...--...+
T Consensus 214 GTPRiAnrLLrRvrDfa~v 232 (328)
T PRK00080 214 GTPRIANRLLRRVRDFAQV 232 (328)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 9839999999999999998
No 118
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.4e-08 Score=88.75 Aligned_cols=203 Identities=23% Similarity=0.258 Sum_probs=134.6
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHCCC---------CCH-------
Q ss_conf 56998729853333357899999996336777-8668952887407779999999873489---------984-------
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTK-NNPVLIGDPGVGKTAIIEGLASRIINGD---------IPE------- 230 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k-~n~~lvGe~GvGKtaive~la~~i~~~~---------vp~------- 230 (853)
|-.+-|-..++-|||-+.-++-+...|...+= .--++.|.-|||||++..-||+-+.-.. -|-
T Consensus 6 lark~RP~~F~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~ 85 (721)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACT 85 (721)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 76540798665532859999999999971997544750279988898999999999768998667898788787765468
Q ss_pred -HH--CCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf -44--57437887313542174542024545899999986079--9-769996362773026665543358888765312
Q gi|254780877|r 231 -SL--KGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASNLLKPSLA 304 (853)
Q Consensus 231 -~l--~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~La 304 (853)
.- +..-++++|.+ +.+|= +.++.|++.+.-.+ | --|-.|||+|||- ..+-|-|--.|.
T Consensus 86 ~i~~g~~~d~~EiDaa------s~~~v--~~~r~l~~~~~y~P~~~~~KvyiiDevhmls--------~~afnalLKtlE 149 (721)
T PRK12323 86 EIDAGRFVDYIEMDAA------SNRGV--DEMAQLLDQAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKTLE 149 (721)
T ss_pred HHHCCCCCCEEEEECC------CCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECCCCCC--------HHHHHHHHHHHC
T ss_conf 7756898764774367------67888--9999999854558876644699985400058--------999999998401
Q ss_pred C--CCEEEEEEECHHHHHHHHHCCHH-HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 4--66048997448999997300111-32023111115777678999999978986541496101589999986333202
Q gi|254780877|r 305 R--GELHCIGATTLDEYRKYIEKDPA-LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYI 381 (853)
Q Consensus 305 r--G~l~~IgaTT~~Eyrk~iEkD~A-l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi 381 (853)
. .-..+|-|||.- +| =+. .-.|-|.-..+--+.++-..-|..+.. ..+|.|.++||...++.++--|
T Consensus 150 ePP~hv~FilaTT~~--~K----ip~TilSRc~~f~~~~~~~~~i~~~l~~i~~----~E~i~~~~~al~~ia~~a~Gs~ 219 (721)
T PRK12323 150 EPPPHVKFILATTDP--QK----IPVTVLSRCLQFNLKQMPPGHIVSHLDAILG----QEGIGHEGNALRLLAQAAHGSM 219 (721)
T ss_pred CCCCCEEEEEECCCH--HH----CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCH
T ss_conf 797553899943863--44----8588987765423478999999999999999----8399779999999999758964
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 457674778999999999875
Q gi|254780877|r 382 TDRFLPDKAIDLMDEASARVR 402 (853)
Q Consensus 382 ~~r~lPDKAIDllDeA~A~~~ 402 (853)
.| |+.|+|.|-|+-.
T Consensus 220 RD------alslldQaia~~~ 234 (721)
T PRK12323 220 RD------ALSLTDQAIAYSA 234 (721)
T ss_pred HH------HHHHHHHHHHHCC
T ss_conf 76------8889999998658
No 119
>KOG0740 consensus
Probab=98.96 E-value=2.1e-08 Score=87.28 Aligned_cols=166 Identities=25% Similarity=0.340 Sum_probs=127.3
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 36777866895288740777999999987348998444574378873135421745420245458999999860799769
Q gi|254780877|r 195 SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 195 ~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~i 274 (853)
+|.--...+|.|+||.|||.|+..+|-- .+..+|.+...+|. .+|.|+-|.-+.+++.-. ....+-|
T Consensus 182 lr~p~rglLLfGPpgtGKtmL~~aiAsE----------~~atff~iSassLt--sK~~Ge~eK~vralf~vA-r~~qPsv 248 (428)
T KOG0740 182 LREPVRGLLLFGPPGTGKTMLAKAIATE----------SGATFFNISASSLT--SKYVGESEKLVRALFKVA-RSLQPSV 248 (428)
T ss_pred CCCCCCHHHEECCCCCCHHHHHHHHHHH----------HCCEEEECCHHHHH--HHCCCHHHHHHHHHHHHH-HHCCCEE
T ss_conf 5445311120058988447999999862----------06657630688865--324670778999999998-7139708
Q ss_pred EEECCHHHHCCCCCCCCCCCHH----------HHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEE-ECCCCCH
Q ss_conf 9963627730266655433588----------8876531246604899744899999730011132023111-1157776
Q gi|254780877|r 275 LFIDELHVLVGAGKTDGAMDAS----------NLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSL-LVGEPTV 343 (853)
Q Consensus 275 lfide~h~~~gaG~~~g~~Daa----------n~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i-~V~Eps~ 343 (853)
.||||+|.++..- +++..+.+ -..++.-+...+.+||||- +..|-|-|+-|||+++ .|.-|+.
T Consensus 249 ifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN-----~P~e~Dea~~Rrf~kr~yiplPd~ 322 (428)
T KOG0740 249 IFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN-----RPWELDEAARRRFVKRLYIPLPDY 322 (428)
T ss_pred EEECHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCC-----CCHHHHHHHHHHHCCEEEECCCCH
T ss_conf 9840256788636-8754544555655777654044578887079981588-----836778888887103155359887
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7899999997898654149610158999998633320245
Q gi|254780877|r 344 TDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITD 383 (853)
Q Consensus 344 ~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~ 383 (853)
++-..++.++-..+ +...++..+.+.|+++.-|-..
T Consensus 323 etr~~~~~~ll~~~----~~~l~~~d~~~l~~~Tegysgs 358 (428)
T KOG0740 323 ETRSLLWKQLLKEQ----PNGLSDLDISLLAKVTEGYSGS 358 (428)
T ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCC
T ss_conf 89999999999768----7874177899999886175622
No 120
>KOG0738 consensus
Probab=98.96 E-value=7.3e-08 Score=82.87 Aligned_cols=166 Identities=25% Similarity=0.390 Sum_probs=110.7
Q ss_pred HHCCCCCCCCCHHHHHHHHHH--HH----------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEE
Q ss_conf 872985333335789999999--63----------367778668952887407779999999873489984445743788
Q gi|254780877|r 172 ARNGKLDPVIGRDDEMRRAIQ--VL----------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMA 239 (853)
Q Consensus 172 Ar~GkLDPVIGRe~EI~~~~~--iL----------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ 239 (853)
--.=+.|-|.|=.+-.+-+-+ +| .||-=..++|+|+||.|||-|+..+|-- .+...|.
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE----------c~tTFFN 275 (491)
T KOG0738 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE----------CGTTFFN 275 (491)
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH----------HCCEEEE
T ss_conf 998676763164999999998875444248887424465300055679997478999999886----------1672787
Q ss_pred EEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC-----------C-CC
Q ss_conf 73135421745420245458999999860799769996362773026665543358888765312-----------4-66
Q gi|254780877|r 240 LDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA-----------R-GE 307 (853)
Q Consensus 240 ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La-----------r-G~ 307 (853)
+.-+.|+ .|||||=|.-++-+. |+....-+.++|||||.+|.+.-++++--.|+-=+|-.|- . --
T Consensus 276 VSsstlt--SKwRGeSEKlvRlLF-emARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738 276 VSSSTLT--SKWRGESEKLVRLLF-EMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred ECHHHHH--HHHCCCHHHHHHHHH-HHHHHHCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 4024565--553252699999999-9998748853533567788725798650367888888999986334444456516
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCE-EECCCCCHHHHHHHHHHHHH
Q ss_conf 0489974489999973001113202311-11157776789999999789
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQS-LLVGEPTVTDTISILRGLKE 355 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~-i~V~Eps~~~t~~iL~gl~~ 355 (853)
+-+.+||-.- -+=|-||-|||++ |.|.=|+.+.--.+|+-.-.
T Consensus 353 VmVLAATN~P-----WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738 353 VMVLAATNFP-----WDIDEALRRRLEKRIYIPLPDAEARSALIKILLR 396 (491)
T ss_pred EEEEECCCCC-----CCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHC
T ss_conf 9998436898-----2057999998763033128787899999997623
No 121
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.94 E-value=2.5e-08 Score=86.67 Aligned_cols=200 Identities=23% Similarity=0.261 Sum_probs=131.2
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHH-CC-C----------
Q ss_conf 699872985333335789999999633677-7866895288740777999999987348998444-57-4----------
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRT-KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESL-KG-K---------- 235 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~-k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l-~~-~---------- 235 (853)
-.+-|-..++-|||-+.-++-+..-|...+ -.--++.|.-|||||+|..-||+-+.-..-+..- .| |
T Consensus 7 ark~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~ 86 (705)
T PRK05648 7 ARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGR 86 (705)
T ss_pred HHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 55317875766328199999999999709863046500789888989999999986778999889787760046662489
Q ss_pred --EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCE
Q ss_conf --37887313542174542024545899999986079--9-7699963627730266655433588887653124--660
Q gi|254780877|r 236 --RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GEL 308 (853)
Q Consensus 236 --~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l 308 (853)
-++++|. ++-+|= +-++.|++.+.-.+ | --|..|||+|||- -.+-|-|--.|.. --.
T Consensus 87 ~~d~~e~d~------as~~~v--~~~r~~~~~~~~~p~~~~~kv~~idevhmls--------~~~fnallktleepp~~v 150 (705)
T PRK05648 87 FVDLIEVDA------ASRTKV--EDTRELLDNVQYAPTRGRYKVYLIDEVHMLS--------SHSFNALLKTLEEPPPHV 150 (705)
T ss_pred CCCEEEECC------CCCCCH--HHHHHHHHHCCCCCCCCCEEEEEEEHHHHCC--------HHHHHHHHHHCCCCCCCE
T ss_conf 776344515------544788--9999999855517767745799984265417--------999999987404797545
Q ss_pred EEEEEECHHHHHHHHHCCH--HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4899744899999730011--13202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 309 HCIGATTLDEYRKYIEKDP--ALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 309 ~~IgaTT~~Eyrk~iEkD~--Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
++|-|||.- +|=+ .|.| -+.-..+--+.++-..-|..+.. ..+|.|.++||...++.+.--|.|
T Consensus 151 ~f~~att~~------~k~p~t~~sr-c~~~~~~~~~~~~~~~~l~~~~~----~e~~~~~~~~~~~~~~~~~g~~rd--- 216 (705)
T PRK05648 151 KFLLATTDP------QKLPVTILSR-CLQFSLKNMSPERVVEHLSHVLG----AENVPFEEDALWLLGRAADGSMRD--- 216 (705)
T ss_pred EEEEECCCH------HHCCHHHHHH-HHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 999842873------5375899976-64302368999999999999999----759977899999999974896777---
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 477899999999987
Q gi|254780877|r 387 PDKAIDLMDEASARV 401 (853)
Q Consensus 387 PDKAIDllDeA~A~~ 401 (853)
|..|+|.|.|+-
T Consensus 217 ---~ls~~dq~~~~~ 228 (705)
T PRK05648 217 ---AMSLTDQAIAFG 228 (705)
T ss_pred ---HHHHHHHHHHCC
T ss_conf ---999999998606
No 122
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.94 E-value=2.9e-09 Score=94.22 Aligned_cols=129 Identities=34% Similarity=0.564 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCH-HHHCCCCCCCHHHCCC
Q ss_conf 948999999999987410123656651289872678616889999999872377653002244-7740345320130477
Q gi|254780877|r 572 GQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDM-SEYMEKHSVSRLIGSP 650 (853)
Q Consensus 572 gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dM-sey~e~~~vs~LiGap 650 (853)
-|+++|+.|..-..+. -+.+.|+ =|.||+|.|||.||..||+.+ .++.+-+.. .|+ .-+=|||+-
T Consensus 2 i~t~~v~~v~~R~l~y----L~~G~Pv---Hl~GPaG~GKT~LA~hvA~~r---~RPV~l~~Gd~eL----~~~DLvG~~ 67 (265)
T TIGR02640 2 IETDAVKRVTSRALRY----LKSGYPV---HLRGPAGTGKTTLAMHVARKR---DRPVVLINGDAEL----TTSDLVGSY 67 (265)
T ss_pred CCCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCCC----CCCCCCCCC
T ss_conf 8772379999987663----2278866---744788855689999999736---8968998658232----654423154
Q ss_pred CHHCCC---C-----------------CCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCC----CCE
Q ss_conf 112035---6-----------------6774211322156410220214414989999999984045788799----977
Q gi|254780877|r 651 PGYVGY---E-----------------EGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQ----GRT 706 (853)
Q Consensus 651 pGYvG~---~-----------------~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~----G~~ 706 (853)
.||--- | .=+.||.|+|. .| =+..||+-..-|.+.|+||.||+||.|.--- -+-
T Consensus 68 ~g~~~~kv~DqfihnV~K~~d~~~~~W~D~rLt~Av~e-G~-TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Y 145 (265)
T TIGR02640 68 AGYTRKKVVDQFIHNVVKLEDIVRQNWVDNRLTLAVRE-GF-TLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRY 145 (265)
T ss_pred CCCEEEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHC-CC-EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 67522223201211134251220026678357899756-97-27664757886204565675555232158887877872
Q ss_pred E----ECCCCEEEECCC
Q ss_conf 8----303315595485
Q gi|254780877|r 707 V----DFRNTLIIMTSN 719 (853)
Q Consensus 707 v----~f~n~iii~TsN 719 (853)
| +|| +|+|||
T Consensus 146 v~VhP~FR---~IfTSN 159 (265)
T TIGR02640 146 VDVHPEFR---VIFTSN 159 (265)
T ss_pred EEECCCCC---EEECCC
T ss_conf 25788702---463148
No 123
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.94 E-value=4.6e-07 Score=76.36 Aligned_cols=189 Identities=15% Similarity=0.084 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH--------------
Q ss_conf 333578999999963367778668952887407779999999873489984445743788731354--------------
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL-------------- 245 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-------------- 245 (853)
.+||++|++.+.+.+.+...+..++.|+-++|||+++.-.+.+.-.... ..+|-.+...-
T Consensus 1 F~~Re~EL~~L~~~~~~~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~l 74 (223)
T pfam01637 1 FFDREKELKELEEWAERGTYPIIVVYGPRRCGKTALLREFLEELRELGY------RVIYYDPLRREFEEKLDRFEEAKRL 74 (223)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC------EEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 9897999999999996699718999868878799999999986334685------2899951444379999988888999
Q ss_pred ---H--CCCCCCCH----HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEEE-
Q ss_conf ---2--17454202----45458999999860799769996362773026665543-3588887653124660489974-
Q gi|254780877|r 246 ---I--AGAKFRGE----FEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA-MDASNLLKPSLARGELHCIGAT- 314 (853)
Q Consensus 246 ---~--ag~~~rg~----~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~-~Daan~LKP~LarG~l~~IgaT- 314 (853)
+ +.-+..+. ...-+..+++.+.....++|++|||++.+.+..+...- -...++.--.+....+..|-+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~I~~GS 154 (223)
T pfam01637 75 AEALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIVVLCGS 154 (223)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99987651233222112078899999999985599659997016776402443059999999999752457758999727
Q ss_pred CHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 4899999730011132023111115777678999999978986541496101589999986333
Q gi|254780877|r 315 TLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSN 378 (853)
Q Consensus 315 T~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~ 378 (853)
...--++.+..+..|-.|+..|.+++-+.+++.+.++..-. -.++.++++.++.++.+..
T Consensus 155 ~~~~m~~~~~~~~plygR~~~i~l~p~~~~~~~efl~~~f~----e~~~~~~~~~~~~iy~~~g 214 (223)
T pfam01637 155 SEGLTIELLDYKSPLYGRHRWALLKPFDFETAWNFLREGFE----ELYEPGPKEEFEEVWRLLG 214 (223)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHC
T ss_conf 19999998620565357502277268998999999999999----8478999899999999969
No 124
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=98.93 E-value=1.9e-08 Score=87.64 Aligned_cols=176 Identities=23% Similarity=0.365 Sum_probs=96.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
+..|||++..+.+.-.|+-+| ..+-++.-.||.||||+|||.||..+|.+|- .+ |++ +
T Consensus 4 ~eFiGQ~~vk~~L~l~I~AAk----~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg---~~-l~i--------------T 61 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAK----MRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VN-LKI--------------T 61 (305)
T ss_pred HHCCCCHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---CC-CEE--------------E
T ss_conf 110582889999999999998----2489734166317568746789999999838---93-267--------------4
Q ss_pred CCCCHHCCCCC----CCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEE--CCC---CCEEECC---CCEEE
Q ss_conf 47711203566----774211322156410220214414989999999984045788--799---9778303---31559
Q gi|254780877|r 648 GSPPGYVGYEE----GGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLT--DSQ---GRTVDFR---NTLII 715 (853)
Q Consensus 648 GappGYvG~~~----gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~lt--d~~---G~~v~f~---n~iii 715 (853)
.+|. -+. -|.||. =.|.+|++.|||+.-+|.|-.+|+-.|||=+|- =++ .|+|... =|+|=
T Consensus 62 sGP~----L~kPgDlaaiLt~---L~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvG 134 (305)
T TIGR00635 62 SGPA----LEKPGDLAAILTN---LEEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred ECCC----CCCHHHHHHHHHH---CCCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCC
T ss_conf 0675----5475789999970---56896310125650483345310530012178778712898525760686944200
Q ss_pred ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 54851268764032679999999998628857726668158628899899999999999999999985798999988999
Q gi|254780877|r 716 MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853)
Q Consensus 716 ~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853)
.||-.|. + ...|..|+-=+--|+-++.+++.+|+.+.= .-..+++++++.
T Consensus 135 ATTR~G~-------------l--------t~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A---------~~L~~ei~~~~a 184 (305)
T TIGR00635 135 ATTRAGM-------------L--------TSPLRDRFGIILRLEFYTPEELAEIVSRSA---------GLLNIEIEQEAA 184 (305)
T ss_pred CCCCCCC-------------C--------CCCHHHHHHHHHHCCCCCHHHHHHHHHHHH---------HHCCCCCCHHHH
T ss_conf 0034774-------------1--------031334544745402689878999987533---------441430077899
Q ss_pred HHHHHCC
Q ss_conf 9999708
Q gi|254780877|r 796 DWLSCRG 802 (853)
Q Consensus 796 ~~l~~~~ 802 (853)
..|++++
T Consensus 185 ~~IArrS 191 (305)
T TIGR00635 185 LEIARRS 191 (305)
T ss_pred HHHHHHC
T ss_conf 9998754
No 125
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=2.4e-08 Score=86.84 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=132.4
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCHHH-------------
Q ss_conf 5699872985333335789999999633677-78668952887407779999999873489-98444-------------
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRT-KNNPVLIGDPGVGKTAIIEGLASRIINGD-IPESL------------- 232 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~-k~n~~lvGe~GvGKtaive~la~~i~~~~-vp~~l------------- 232 (853)
|-.+-|-..++-|||-+.-++-+..-|...+ -.--++.|.-|||||+|..-||+-+.-.. +...-
T Consensus 6 ~a~k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~ 85 (663)
T PRK08770 6 LARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAG 85 (663)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 77550887464522859999999999970997404762279988888999999998678999999978778778988548
Q ss_pred CCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHC--CC
Q ss_conf 57437887313542174542024545899999986079--9-76999636277302666554335888-8765312--46
Q gi|254780877|r 233 KGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASN-LLKPSLA--RG 306 (853)
Q Consensus 233 ~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan-~LKP~La--rG 306 (853)
+..-++++|.++ -+|= +-++.+++.+.-.+ | --|..|||+|||- -.+-| +|| .|. -.
T Consensus 86 ~~~d~~e~daas------~~~v--~~~r~~~~~~~~~p~~~~~kvy~idevhmls--------~~~fna~lk-tleepp~ 148 (663)
T PRK08770 86 RYIDLLEIDAAS------NTGV--DDVREVIENAQYMPSRGKFKVYLIDEVHMLS--------KAAFNALLK-TLEEPPE 148 (663)
T ss_pred CCCCEEEEECCC------CCCH--HHHHHHHHHCCCCCCCCCEEEEEEECHHHCC--------HHHHHHHHH-HHCCCCC
T ss_conf 988658864676------5888--9999999844358877743699970043328--------999999987-4027864
Q ss_pred CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 60489974489999973001113202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 307 ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 307 ~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
-.++|-|||.-+ | | +-.-|.| -+.-..+--+.++...-|..+.. ..+|.|.++||....+.+.--|.|
T Consensus 149 ~v~f~~att~~~--k-~-p~t~~sr-c~~f~~~~~~~~~~~~~l~~~~~----~e~~~~~~~~~~~~~~~~~gs~rd--- 216 (663)
T PRK08770 149 HVKFLLATTDPQ--K-L-PVTVLSR-CLQFNLKRLDEDQIQGQMTRILA----AEQIESDPSAIVQLSKAADGSLRD--- 216 (663)
T ss_pred CEEEEEECCCHH--H-C-CHHHHHH-HHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 428998548733--3-7-4899988-87634377999999999999999----839976999999999974785677---
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 4778999999999875
Q gi|254780877|r 387 PDKAIDLMDEASARVR 402 (853)
Q Consensus 387 PDKAIDllDeA~A~~~ 402 (853)
|..|+|.|-|+-.
T Consensus 217 ---~lsl~~q~~~~~~ 229 (663)
T PRK08770 217 ---GLSLLDQAIAYAG 229 (663)
T ss_pred ---HHHHHHHHHHHCC
T ss_conf ---8889999998668
No 126
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=98.91 E-value=8.9e-09 Score=90.28 Aligned_cols=160 Identities=25% Similarity=0.380 Sum_probs=85.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCC------CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCC
Q ss_conf 8533333578999999963367778------6689528874077799999998734899844457437887313542174
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSRRTKN------NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGA 249 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r~~k~------n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~ 249 (853)
+|+-.|| .++|++-+++--+-.|+ ..+|.||||+|||++++=+|.-+-.+ .+|-|= ..|.
T Consensus 2 ~L~eFiG-Q~~vk~~L~l~I~AAk~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~--------l~iTsG--P~L~--- 67 (305)
T TIGR00635 2 LLAEFIG-QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--------LKITSG--PALE--- 67 (305)
T ss_pred CCHHCCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC--------CEEEEC--CCCC---
T ss_conf 8011058-2889999999999998248973416631756874678999999983893--------267406--7554---
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCHH--------------------HHCCCCCCCC--CCCHHHHHHHHHCCCC
Q ss_conf 54202454589999998607997699963627--------------------7302666554--3358888765312466
Q gi|254780877|r 250 KFRGEFEERLKSLLCEIRSEDGEIILFIDELH--------------------VLVGAGKTDG--AMDASNLLKPSLARGE 307 (853)
Q Consensus 250 ~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h--------------------~~~gaG~~~g--~~Daan~LKP~LarG~ 307 (853)
| .|| |-+++--+++ .-|||||||| -+||.|-+.- .||. --
T Consensus 68 k-PgD----laaiLt~L~~---gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldL----------pP 129 (305)
T TIGR00635 68 K-PGD----LAAILTNLEE---GDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDL----------PP 129 (305)
T ss_pred C-HHH----HHHHHHHCCC---CCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECC----------CC
T ss_conf 7-578----9999970568---9631012565048334531053001217877871289852576068----------69
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEE-ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 04899744899999730011132023111-1157776789999999789865414961015899999863
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSL-LVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVL 376 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i-~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~l 376 (853)
+..|||||-.-- -. .-|.-||=.| .++==|.+|-..|+.--+.. =+|.|..+|..+.++-
T Consensus 130 FTLvGATTR~G~--lt---~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A~~----L~~ei~~~~a~~IArr 190 (305)
T TIGR00635 130 FTLVGATTRAGM--LT---SPLRDRFGIILRLEFYTPEELAEIVSRSAGL----LNIEIEQEAALEIARR 190 (305)
T ss_pred CCCCCCCCCCCC--CC---CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHH
T ss_conf 442000034774--10---3133454474540268987899998753344----1430077899999875
No 127
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=98.91 E-value=2.4e-09 Score=94.85 Aligned_cols=160 Identities=27% Similarity=0.491 Sum_probs=105.4
Q ss_pred CCCCCCHHHHHHHHHHHH------------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
Q ss_conf 533333578999999963------------36777866895288740777999999987348998444574378873135
Q gi|254780877|r 177 LDPVIGRDDEMRRAIQVL------------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA 244 (853)
Q Consensus 177 LDPVIGRe~EI~~~~~iL------------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 244 (853)
+.-|=|-|++=+++++|- .-|-=..+|||||||+|||=|+...|= +-.|| .|++.=+.
T Consensus 58 F~DVAG~dEAKeEl~EiVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAG---EA~VP-------FF~iSGSd 127 (505)
T TIGR01241 58 FKDVAGIDEAKEELVEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG---EAGVP-------FFSISGSD 127 (505)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---CCCCC-------CEEECCCC
T ss_conf 234445323334333134222696379872788987147317878424678875202---58896-------24740761
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHH---CCCCCCCCCCCH-HHHHHHHH-------CCCCEEEEEE
Q ss_conf 421745420245458999999860799769996362773---026665543358-88876531-------2466048997
Q gi|254780877|r 245 LIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVL---VGAGKTDGAMDA-SNLLKPSL-------ARGELHCIGA 313 (853)
Q Consensus 245 l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~---~gaG~~~g~~Da-an~LKP~L-------arG~l~~Iga 313 (853)
.|= .+.|==..|++.+.+.+++. -++|.|||||-.+ =|||.-.|+-|= =+-|=..| ++-.+=+|+|
T Consensus 128 FVE--MFVGVGASRVRDLFeqAK~n-APCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AA 204 (505)
T TIGR01241 128 FVE--MFVGVGASRVRDLFEQAKKN-APCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 204 (505)
T ss_pred EEE--CCCCCCCEEHHHHHHHHHHH-CCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEE
T ss_conf 011--12056400014457999971-897056401000033356436676541355433233133178589885799850
Q ss_pred EC-HHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHHHHHHHHHHH
Q ss_conf 44-8999997300111320--2311-11157776789999999789
Q gi|254780877|r 314 TT-LDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDTISILRGLKE 355 (853)
Q Consensus 314 TT-~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~gl~~ 355 (853)
|= ||= =|+||.| ||.+ |.|.-|+...=.+||+=...
T Consensus 205 TNRPDv------LD~ALLRPGRFDRQv~V~~PD~~GR~~IL~VH~~ 244 (505)
T TIGR01241 205 TNRPDV------LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 244 (505)
T ss_pred CCCCCC------CCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 488411------6510068787445134588874678999999854
No 128
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.91 E-value=5.5e-08 Score=83.86 Aligned_cols=176 Identities=27% Similarity=0.402 Sum_probs=92.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCC------CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC
Q ss_conf 29853333357899999996336777------866895288740777999999987348998444574378873135421
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSRRTK------NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA 247 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r~~k------~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 247 (853)
-..|+-.|| .+.++.-+++.-+-.| ..++|.|+||.|||+++.-+|.-+-.+ .++-+ -..| .
T Consensus 22 P~~l~efiG-Q~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--------~k~ts--Gp~l-e 89 (332)
T COG2255 22 PKTLDEFIG-QEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--------LKITS--GPAL-E 89 (332)
T ss_pred CCCHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--------EEECC--CCCC-C
T ss_conf 654888518-3999999999999998449876747864799876888999999985677--------37636--6201-5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--------------------CC
Q ss_conf 7454202454589999998607997699963627730266655433588887653124--------------------66
Q gi|254780877|r 248 GAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--------------------GE 307 (853)
Q Consensus 248 g~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--------------------G~ 307 (853)
- .|+ +-+++..++ .+-||||||||-+ +.-+-.+|=|++.- --
T Consensus 90 K---~gD----laaiLt~Le---~~DVLFIDEIHrl--------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 K---PGD----LAAILTNLE---EGDVLFIDEIHRL--------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred C---HHH----HHHHHHCCC---CCCEEEEEHHHHC--------CHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCC
T ss_conf 7---265----999986398---6776777255314--------742898964675310577897248755347637998
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEE-ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 04899744899999730011132023111-11577767899999997898654149610158999998633320245767
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSL-LVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i-~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
+..|||||-..- + -..|..||-.+ .++--+.++-..|+. ++-..-++.+++++....++-|. --
T Consensus 152 FTLIGATTr~G~---l--t~PLrdRFGi~~rlefY~~~eL~~Iv~----r~a~~l~i~i~~~~a~eIA~rSR------GT 216 (332)
T COG2255 152 FTLIGATTRAGM---L--TNPLRDRFGIIQRLEFYTVEELEEIVK----RSAKILGIEIDEEAALEIARRSR------GT 216 (332)
T ss_pred EEEEEECCCCCC---C--CCHHHHHCCCEEEEECCCHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHCC------CC
T ss_conf 137510134664---5--633688628604540588899999999----88887387768579999998636------99
Q ss_pred HHHHHHHH
Q ss_conf 47789999
Q gi|254780877|r 387 PDKAIDLM 394 (853)
Q Consensus 387 PDKAIDll 394 (853)
|--|.-||
T Consensus 217 PRIAnRLL 224 (332)
T COG2255 217 PRIANRLL 224 (332)
T ss_pred CHHHHHHH
T ss_conf 38999999
No 129
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=4.8e-08 Score=84.34 Aligned_cols=201 Identities=23% Similarity=0.248 Sum_probs=130.1
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCC-CCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CCHH----------HC--
Q ss_conf 6998729853333357899999996336-7778668952887407779999999873489--9844----------45--
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSR-RTKNNPVLIGDPGVGKTAIIEGLASRIINGD--IPES----------LK-- 233 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r-~~k~n~~lvGe~GvGKtaive~la~~i~~~~--vp~~----------l~-- 233 (853)
-.+-|-..++-|||-+.-++-+...|.. |--.--++-|.-|||||++..-||+-+.-.. -++. -.
T Consensus 7 ark~rp~~f~~~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~ 86 (696)
T PRK06872 7 ARKWRPKTFSEVVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGN 86 (696)
T ss_pred HHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 76518875645238599999999999719863047511789888889999999986789999999788862257674478
Q ss_pred CCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHCC--CC
Q ss_conf 7437887313542174542024545899999986079--9-76999636277302666554335888-87653124--66
Q gi|254780877|r 234 GKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASN-LLKPSLAR--GE 307 (853)
Q Consensus 234 ~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan-~LKP~Lar--G~ 307 (853)
..-++++|.++- +| =+.++.+++.+.-.+ | --|-.|||+|||-. .+=| ||| .|.. .-
T Consensus 87 ~~d~~eidaas~------~~--v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~--------~~fnallk-tleepp~~ 149 (696)
T PRK06872 87 FIDLIEIDAASR------TK--VEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSR--------HSFNALLK-TLEEPPEY 149 (696)
T ss_pred CCCEEEEECCCC------CC--HHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCH--------HHHHHHHH-HHCCCCCC
T ss_conf 775467505655------78--899999998454577677547999700544389--------99999987-50279754
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
.++|-|||.- +|. +-.-|.| -+....+--+.+.-..-|..+.. ..+|.|.++||+..++.++--|.|
T Consensus 150 v~f~latt~~--~k~--p~tilsr-c~~f~~~~~~~~~i~~~l~~i~~----~e~~~~~~~al~~~a~~a~gs~rd---- 216 (696)
T PRK06872 150 VKFLLATTDP--QKL--PITILSR-CMQFHLKALDQTQIAQHLEFILT----QENIPFESPALEKLAKAAQGSIRD---- 216 (696)
T ss_pred EEEEEECCCH--HHC--CHHHHHH-HHHEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 4899843863--227--4889876-65300268999999999999999----849977999999999975895677----
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 77899999999987
Q gi|254780877|r 388 DKAIDLMDEASARV 401 (853)
Q Consensus 388 DKAIDllDeA~A~~ 401 (853)
|+.|+|.|-|+-
T Consensus 217 --alsl~dqai~~~ 228 (696)
T PRK06872 217 --SLSLTDQAIAMS 228 (696)
T ss_pred --HHHHHHHHHHHC
T ss_conf --888999999975
No 130
>KOG0730 consensus
Probab=98.89 E-value=9.1e-08 Score=82.09 Aligned_cols=159 Identities=28% Similarity=0.444 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHH--HH------------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH
Q ss_conf 3335789999999--63------------367778668952887407779999999873489984445743788731354
Q gi|254780877|r 180 VIGRDDEMRRAIQ--VL------------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL 245 (853)
Q Consensus 180 VIGRe~EI~~~~~--iL------------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l 245 (853)
-||=-+++++-+| |+ .=..-..++|-||||.|||.++..+|.- .++-++++....|
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne----------~~~nFlsvkgpEL 504 (693)
T KOG0730 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE----------AGMNFLSVKGPEL 504 (693)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH----------HCCCEEECCCHHH
T ss_conf 045789999999999861665659998725788754777789986247899998646----------3587264157899
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHH-----HHH---HHHHCCCCEEEEEEECHH
Q ss_conf 217454202454589999998607997699963627730266655433588-----887---653124660489974489
Q gi|254780877|r 246 IAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDAS-----NLL---KPSLARGELHCIGATTLD 317 (853)
Q Consensus 246 ~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daa-----n~L---KP~LarG~l~~IgaTT~~ 317 (853)
. ++|-||=|.-+..+.+...... +.|+|+|||.++.++-+++++ +++ .+| --..+...+-+||||--.
T Consensus 505 ~--sk~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRp 580 (693)
T KOG0730 505 F--SKYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEALKNVLVIAATNRP 580 (693)
T ss_pred H--HHHCCCHHHHHHHHHHHHHHCC-CEEEEHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCEEEEECCCCH
T ss_conf 8--7751825899999999986269-837744666666630478755-14899999999870041014708999505881
Q ss_pred HHHHHHHCCHHHHH--CCCE-EECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99997300111320--2311-1115777678999999978986
Q gi|254780877|r 318 EYRKYIEKDPALAR--RFQS-LLVGEPTVTDTISILRGLKERY 357 (853)
Q Consensus 318 Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~gl~~~y 357 (853)
. .=|+||.| ||.. |.|.-|+.+.-.+||+.-..++
T Consensus 581 d-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730 581 D-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred H-----HCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 0-----1269775986533057515834788999999997339
No 131
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=4.4e-07 Score=76.51 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=54.8
Q ss_pred CHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEE--EEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-
Q ss_conf 8444574378873135421745420245458999999860799769--9963627730266655433588887653124-
Q gi|254780877|r 229 PESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEII--LFIDELHVLVGAGKTDGAMDASNLLKPSLAR- 305 (853)
Q Consensus 229 p~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~i--lfide~h~~~gaG~~~g~~Daan~LKP~Lar- 305 (853)
.+....++||-+|-.-++.. +-..++++-+++.+.+++ |.-.+.|.|.. +.++|
T Consensus 113 ~P~~~~yKV~IIDEah~Ls~--------~A~NALLKtLEEPP~~~vFIL~Ttep~kIl~---------------TI~SRC 169 (557)
T PRK07270 113 APSRATYKVYIIDEVHMLST--------GAFNALLKTLEEPTENVVFILATTELHKIPA---------------TILSRV 169 (557)
T ss_pred CCCCCCEEEEEECCHHHCCH--------HHHHHHHHHHHCCCCCEEEEEEECCHHHCCH---------------HHHHHH
T ss_conf 87778838999714453499--------9999899985289987699998499475928---------------887430
Q ss_pred --CCEEEEEEECHHHHHHHHHCC-------HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf --660489974489999973001-------11320231111157776789999999789865414961015899999
Q gi|254780877|r 306 --GELHCIGATTLDEYRKYIEKD-------PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSA 373 (853)
Q Consensus 306 --G~l~~IgaTT~~Eyrk~iEkD-------~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~a 373 (853)
=+++-|.....-+.=++|-.. .||.- .....+-+.-+++.||--..+.+ .+-+|+.+.+...
T Consensus 170 Qrf~F~~i~~~~i~~~L~~I~~~E~i~~~~~aL~~---Ia~~a~G~mRdAlsiLdQ~~s~~---~~~~it~~~v~~~ 240 (557)
T PRK07270 170 QRFEFKSIKTKAIREHLAWILDKEGISFEVEALNL---IARRAEGGMRDALSILDQALSLS---QDNQVTIAIAEEI 240 (557)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHCCCCHHHHHHHHHHHHHCC---CCCCCCHHHHHHH
T ss_conf 00108889999999999999998399869999999---99977996878999999999717---9997679999999
No 132
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=5.4e-08 Score=83.90 Aligned_cols=182 Identities=16% Similarity=0.205 Sum_probs=101.6
Q ss_pred CCCCCHHHHH-HHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCH-HHCC-------------CEEEEEE
Q ss_conf 3333357899-999996336777866-8952887407779999999873489984-4457-------------4378873
Q gi|254780877|r 178 DPVIGRDDEM-RRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPE-SLKG-------------KRLMALD 241 (853)
Q Consensus 178 DPVIGRe~EI-~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~-~l~~-------------~~i~~ld 241 (853)
|-++|-.+.| +.+...+.+.+=.+. ++.|++|+||++++..+|+.+.-.+... .=.| --++.+.
T Consensus 5 ~~~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~ 84 (329)
T PRK08058 5 EQLTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVA 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEC
T ss_conf 88883189999999999985996615655789998899999999999739999999988788899998769999767745
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC--CEEEEEEECH
Q ss_conf 13542174542024545899999986079---976999636277302666554335888876531246--6048997448
Q gi|254780877|r 242 MGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG--ELHCIGATTL 316 (853)
Q Consensus 242 ~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG--~l~~IgaTT~ 316 (853)
. .|.+.. =+.++.+.+++...+ +.-|..||+.|++ +..|||-|-=.|..- ..-+|=+||
T Consensus 85 p----~~~~i~---idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m--------~~~AaNALLKtLEEPp~~t~fIL~t~- 148 (329)
T PRK08058 85 P----DGQSIK---KDQIRYLKEEFSKSGVESNKKVYIIEHADKM--------TASAANSLLKFLEEPSGDTTAILLTE- 148 (329)
T ss_pred C----CCCCCC---HHHHHHHHHHHCCCCCCCCCEEEEEECHHHH--------CHHHHHHHHHHHHCCCCCCEEEEEEC-
T ss_conf 6----614077---9999999999643875788679997347762--------99999999998646897867998729-
Q ss_pred HHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999730011132023111115777678999999978986541496101589999986333202457674778999999
Q gi|254780877|r 317 DEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 (853)
Q Consensus 317 ~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDe 396 (853)
+..+-. +-+-.|=|.+.+..|+.++....|. + ++|. ++....++.++. -|.+|.++.+.
T Consensus 149 -~~~~lL---pTI~SRCq~i~f~~~~~~~i~~~L~-------~-~~i~--~~~a~l~a~~~g-------s~~~A~~l~~~ 207 (329)
T PRK08058 149 -NKHQIL---PTILSRCQVVEFRPLPPESLIQRLQ-------E-EGIS--ESLATLLAQLTN-------SVEEALALSED 207 (329)
T ss_pred -CHHHHH---HHHHHCCEEEECCCCCHHHHHHHHH-------H-CCCC--HHHHHHHHHHCC-------CHHHHHHHHCC
T ss_conf -966643---6886314256588999999999999-------8-7999--899999998789-------99999988426
No 133
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.88 E-value=6.1e-08 Score=83.51 Aligned_cols=103 Identities=19% Similarity=0.353 Sum_probs=79.3
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCC
Q ss_conf 10220214414989999999984045788799977830331559548512687640326799999999986288577266
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNR 751 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnR 751 (853)
.|++.||+.--+.+-|.+|-..|+.- |. -||||.||-|-..+....... -.-.|.+||.|
T Consensus 277 GVLFIDEvHMLDiEcFsfLnralEs~-----------la-PivI~ATNRG~~~IRGTd~~s--------PHGiP~DlLDR 336 (395)
T pfam06068 277 GVLFIDEVHMLDIECFSFLNRALESE-----------LA-PIVILATNRGICTIRGTDIIS--------PHGIPLDLLDR 336 (395)
T ss_pred CCEEEECCHHCCHHHHHHHHHHHCCC-----------CC-CEEEEEECCCCEEECCCCCCC--------CCCCCHHHHHH
T ss_conf 74688500000058998887765056-----------78-769998446520352567758--------88998777730
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC
Q ss_conf 68158628899899999999999999999985798999988999999970898
Q gi|254780877|r 752 LDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYD 804 (853)
Q Consensus 752 id~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~ 804 (853)
+ -||.-.|++.+++++|+.... +.-.+.++++|+++|++-|..
T Consensus 337 l-lII~T~py~~~ei~~Ii~iRa---------~~E~v~l~~~al~~L~~ig~~ 379 (395)
T pfam06068 337 L-LIITTEPYTREEIKQILEIRA---------QEEGVEISEEALDLLAKIGEE 379 (395)
T ss_pred E-EEEECCCCCHHHHHHHHHHHH---------HHHCCCCCHHHHHHHHHHHHH
T ss_conf 2-588568899899999999877---------760787798999999986532
No 134
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.85 E-value=3.9e-07 Score=76.94 Aligned_cols=160 Identities=16% Similarity=0.307 Sum_probs=81.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHH
Q ss_conf 98726786168899999998723776530022447740345320130477112035667742113221564102202144
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIE 680 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiE 680 (853)
+.+.||+|+|||.|+.+++..+.....+.+.++|.++..... .-+ +.+ ..+.++++|+|+
T Consensus 41 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~-~~l-----------------~~l--~~~d~l~iDDi~ 100 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADP-EVL-----------------EGL--EQADLVCLDDVE 100 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH-HHH-----------------HHC--CCCCEEEEECHH
T ss_conf 999899999889999999999862699579952999877539-999-----------------727--448999996633
Q ss_pred HCC--HHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCC--CCEE
Q ss_conf 149--899999999840457887999778303315595485126876403267999999999862885772666--8158
Q gi|254780877|r 681 KAH--SDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRL--DEII 756 (853)
Q Consensus 681 Kah--~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRi--d~iv 756 (853)
.-. +.....|+.++.. +. -+++-|++||+..... -..+.|.+..|+ --++
T Consensus 101 ~i~~~~~~e~~lF~l~N~--~~--------~~~~~ilits~~~p~~----------------l~~~l~dL~SRl~~~~~~ 154 (226)
T TIGR03420 101 AIAGQPEWQEALFHLYNR--VR--------EAGGRLLIAGRAAPAQ----------------LPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred HHCCCHHHHHHHHHHHHH--HH--------HHCCEEEEECCCCHHH----------------CCCCHHHHHHHHHCCCEE
T ss_conf 343783789999999999--98--------6528289867888232----------------032017799999688568
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 62889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r 757 LFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 757 ~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
...+++.+.+..|+.+.. ..+++ .+++++++||+++. +..+ |.+..++.+
T Consensus 155 ~I~~pdd~~~~~iL~k~~-------~~r~i--~i~~~vi~yl~~r~-~R~~--~~l~~~l~~ 204 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRA-------ARRGL--QLPDEVADYLLRHG-SRDM--GSLMALLDA 204 (226)
T ss_pred ECCCCCHHHHHHHHHHHH-------HHCCC--CCCHHHHHHHHHHC-CCCH--HHHHHHHHH
T ss_conf 527999999999999999-------98599--88999999999863-7989--999999999
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=9.4e-07 Score=73.83 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=8.7
Q ss_pred EEEEHHHHHCCHHHHHHHHHHHH
Q ss_conf 02202144149899999999840
Q gi|254780877|r 673 VVLFDEIEKAHSDVHNILLQVLD 695 (853)
Q Consensus 673 Vil~DEiEKah~~v~~~llqild 695 (853)
|+++||++..+.+-+|.||..|+
T Consensus 122 V~IIDEahmLt~~A~NALLKtLE 144 (560)
T PRK06647 122 VYIIDEVHMLSNSAFNALLKTIE 144 (560)
T ss_pred EEEECCHHHCCHHHHHHHHHHHH
T ss_conf 99964656559999999999863
No 136
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1.4e-06 Score=72.45 Aligned_cols=115 Identities=16% Similarity=0.247 Sum_probs=51.7
Q ss_pred HHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE---CCHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 444574378873135421745420245458999999860799769996---36277302666554335888876531246
Q gi|254780877|r 230 ESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFI---DELHVLVGAGKTDGAMDASNLLKPSLARG 306 (853)
Q Consensus 230 ~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfi---de~h~~~gaG~~~g~~Daan~LKP~LarG 306 (853)
+.-..++||-+|-.-++.- +-..++++-+++.+.++ +|| -|.|.| +-..++|-
T Consensus 115 P~~~~yKV~IIDeah~Lt~--------~A~NALLKtLEEPP~~v-iFILaTtep~ki---------------~~TI~SRC 170 (563)
T PRK06674 115 PSAVEYKVYIIDEVHMLSI--------GAFNALLKTLEEPPGHV-IFILATTEPHKI---------------PPTIISRC 170 (563)
T ss_pred CCCCCEEEEEEECHHHCCH--------HHHHHHHHHHHCCCCCE-EEEEECCCHHHC---------------CHHHHHHH
T ss_conf 8678737999854563799--------99999999863887564-999965994758---------------47887331
Q ss_pred ---CEEEEEEECHHHHHHHHHCC-------HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf ---60489974489999973001-------1132023111115777678999999978986541496101589999986
Q gi|254780877|r 307 ---ELHCIGATTLDEYRKYIEKD-------PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAV 375 (853)
Q Consensus 307 ---~l~~IgaTT~~Eyrk~iEkD-------~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ 375 (853)
+++-|.....-++=+||-.. .||. -.....+-|.-+++.||--..+ | .+=+++.+.+....-
T Consensus 171 Qrf~F~ri~~~~i~~rL~~I~~~E~i~~~~~aL~---~Ia~~a~GsmRDAlsiLdQ~~s-~---~~~~i~~~~v~~~lG 242 (563)
T PRK06674 171 QRFDFRRISVNDIVERLSTVVTNEGTQVEDEALQ---IIARAADGGMRDALSLLDQAIS-F---SDERVTTEDVLAVTG 242 (563)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHCCCCHHHHHHHHHHHHH-H---CCCCCCHHHHHHHHC
T ss_conf 0312788999999999999999849998788999---9999769978899999999997-1---599768999999868
No 137
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=1.2e-06 Score=72.93 Aligned_cols=199 Identities=17% Similarity=0.288 Sum_probs=119.1
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC----CCC-----CCCCCHHHH
Q ss_conf 76745948999999999987410123656651289872678616889999999872377----653-----002244774
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD----ENS-----MIRIDMSEY 637 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~----~~~-----lir~dMsey 637 (853)
-..++||++.+..+.+++...|. | -.|||.||.|||||.+|+.+|+.|--. +.. -..-.+-++
T Consensus 20 f~~liGQ~~~~~~l~n~i~~~~~-------~-~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i 91 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRL-------A-GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISF 91 (507)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 65623939999999999973996-------6-347745879978899999999996799988889988888887678998
Q ss_pred CCCCCCCHH-HCCCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCC
Q ss_conf 034532013-047711203566774211322156----410220214414989999999984045788799977830331
Q gi|254780877|r 638 MEKHSVSRL-IGSPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNT 712 (853)
Q Consensus 638 ~e~~~vs~L-iGappGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~ 712 (853)
.+..++.-+ +-| .---|-++=-.|.+.++..| |-|..+||++.-..+.||.||..|++-- .++
T Consensus 92 ~~~~~~dv~EiDa-as~~gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEepp-----------~~~ 159 (507)
T PRK06645 92 NNHNHPDIIEIDA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-----------PHI 159 (507)
T ss_pred HCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCC-----------CCE
T ss_conf 6589998599637-8888889999998635517876743589952142248999999999742786-----------443
Q ss_pred EEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 55954851268764032679999999998628857726668158628899899999999999999999985798999988
Q gi|254780877|r 713 LIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDD 792 (853)
Q Consensus 713 iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~ 792 (853)
+|||.++- . ...++-.+.|. ..+-|++++..++..-+. .-.... .+.+++
T Consensus 160 ~Fi~atte-------------------~-~kip~ti~src-q~f~~~~i~~~~i~~~l~-------~i~~~E--~~~~~~ 209 (507)
T PRK06645 160 IFIFATTE-------------------V-QKIPATIISRC-QRYDLRRLSFEEIFKLLE-------YITKQE--NLKADI 209 (507)
T ss_pred EEEEECCC-------------------H-HHCCHHHHHHC-EEEEEECCCHHHHHHHHH-------HHHHHC--CCCCCH
T ss_conf 89997485-------------------3-64837888543-278754599799999999-------999976--877778
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 99999997089822062157999998
Q gi|254780877|r 793 QVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 793 ~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
+++..|++.+- -+.|.--..+++
T Consensus 210 ~al~~ia~~a~---Gs~RDalslldq 232 (507)
T PRK06645 210 EALRIIAYKSE---GSARDAVSILDQ 232 (507)
T ss_pred HHHHHHHHHCC---CCHHHHHHHHHH
T ss_conf 99999998559---986789999999
No 138
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=1.5e-06 Score=72.28 Aligned_cols=192 Identities=19% Similarity=0.295 Sum_probs=123.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC------CCCCCHHHHCCC
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653------002244774034
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS------MIRIDMSEYMEK 640 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~------lir~dMsey~e~ 640 (853)
-+.|+||++++..+.+++...|. | -.|||.||.|||||.+|+.+|+.|+..... --.-.+.++.+
T Consensus 16 F~dvVGQ~~vv~~L~nai~~~ri-------~-HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~- 86 (462)
T PRK06305 16 FSEILGQDAVVTVLKNALRFNRA-------A-HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISS- 86 (462)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC-
T ss_conf 76604909999999999984997-------6-23430389985999999999999679999888898876688899863-
Q ss_pred CCCCHHHCCCCHHC--------CCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEE
Q ss_conf 53201304771120--------3566774211322156----41022021441498999999998404578879997783
Q gi|254780877|r 641 HSVSRLIGSPPGYV--------GYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVD 708 (853)
Q Consensus 641 ~~vs~LiGappGYv--------G~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~ 708 (853)
|+.+-.+ |-|+=-.|.+.++..| |-|+++||++.-+.+-||.||..|+|=-
T Consensus 87 -------g~~~DViEiDaAs~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP---------- 149 (462)
T PRK06305 87 -------GTSLDVIEIDGASHRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPP---------- 149 (462)
T ss_pred -------CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCC----------
T ss_conf -------899986864355344668999999771008867750599981521179999999999861898----------
Q ss_pred CCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 03315595485126876403267999999999862885772666815862889989999999999999999998579899
Q gi|254780877|r 709 FRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISM 788 (853)
Q Consensus 709 f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l 788 (853)
.+++|||.++- . ...+|-.+.|.. .+-|++++.+++..-+. .-+...+ +
T Consensus 150 -~~v~FILaTTe--------~------------~KIp~TIlSRCQ-rf~F~~i~~~~I~~~L~-------~I~~~E~--i 198 (462)
T PRK06305 150 -QHVKFFLATTE--------I------------HKIPGTILSRCQ-KMHLKRIPEETIIDKLA-------LIAQQDG--I 198 (462)
T ss_pred -CCEEEEEEECC--------H------------HHCCHHHHHHHH-EEECCCCCHHHHHHHHH-------HHHHHCC--C
T ss_conf -77499998188--------1------------428547876540-23325799999999999-------9999839--9
Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 998899999997089822062157999998
Q gi|254780877|r 789 DFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 789 ~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
.+++++++.|++.+ .-+.|.--..+++
T Consensus 199 ~~e~~AL~lIA~~a---~GsmRDAlslLDQ 225 (462)
T PRK06305 199 ETSREALLPIARAA---QGSLRDAESLYDY 225 (462)
T ss_pred CCCHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_conf 85999999999985---8958789999999
No 139
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=98.80 E-value=1e-07 Score=81.60 Aligned_cols=194 Identities=24% Similarity=0.445 Sum_probs=131.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCC--------CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 767459489999999999874101236566--------512898726786168899999998723776530022447740
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQR--------PMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~--------p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
=+-|-|.|||.+.|..-+-= |++|+| |-|+ |++||||+|||-||||+|-+= .-+|.++--|+|
T Consensus 58 F~DVAG~dEAKeEl~EiVdF----LK~P~kf~~LGaKIPKGV-LLvGPPGTGKTLLAKAvAGEA---~VPFF~iSGSdF- 128 (505)
T TIGR01241 58 FKDVAGIDEAKEELVEIVDF----LKNPSKFTKLGAKIPKGV-LLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDF- 128 (505)
T ss_pred ECCCCCCHHHHHHHHHHHHH----CCCCHHHHHCCCCCCCCE-EEECCCCCCHHHHHHHHHCCC---CCCCEEECCCCE-
T ss_conf 23444532333433313422----269637987278898714-731787842467887520258---896247407610-
Q ss_pred CCCCCCHHHCCCCHHCCCCCCCCCCH-HHHCCCCCEEEEHHHHH------------CCHHHHHHHHHHHHC--CEEECCC
Q ss_conf 34532013047711203566774211-32215641022021441------------498999999998404--5788799
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEGGALTE-AVRRHPYQVVLFDEIEK------------AHSDVHNILLQVLDD--GRLTDSQ 703 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~gg~Lte-~vr~~P~sVil~DEiEK------------ah~~v~~~llqild~--G~ltd~~ 703 (853)
|=.++| ||=.====|-| |=++-| |+|..|||+= +|-+.=+.|=|+|=| |. +.+.
T Consensus 129 ----VEMFVG-----VGASRVRDLFeqAK~nAP-CIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF-~~~~ 197 (505)
T TIGR01241 129 ----VEMFVG-----VGASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGF-GTNT 197 (505)
T ss_pred ----EECCCC-----CCCEEHHHHHHHHHHHCC-CEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCC-CCCC
T ss_conf ----111205-----640001445799997189-70564010000333564366765413554332331331785-8988
Q ss_pred CCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97783033155954851268764032679999999998628857726668158628899899999999999999999985
Q gi|254780877|r 704 GRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKE 783 (853)
Q Consensus 704 G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~ 783 (853)
+.|||.-|| .+|=...++ .|| +|+|.=|+-+.-+-.--..|+..+.
T Consensus 198 -------gvIv~AATN--------RPDvLD~AL-------LRP---GRFDRQv~V~~PD~~GR~~IL~VH~--------- 243 (505)
T TIGR01241 198 -------GVIVIAATN--------RPDVLDPAL-------LRP---GRFDRQVVVDLPDIKGREEILKVHA--------- 243 (505)
T ss_pred -------CEEEEEECC--------CCCCCCCCC-------CCC---CCCCCEEECCCCCHHHHHHHHHHHH---------
T ss_conf -------579985048--------841165100-------687---8744513458887467899999985---------
Q ss_pred CCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 7989999889999999708982206215799999
Q gi|254780877|r 784 RNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817 (853)
Q Consensus 784 ~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~ 817 (853)
++++|. .+--++.|++. .|.|-.=.|.+.|.
T Consensus 244 ~~~kLa-~~vdL~~~Ar~--TPGfSGADLaNl~N 274 (505)
T TIGR01241 244 KNKKLA-PDVDLKAVARR--TPGFSGADLANLLN 274 (505)
T ss_pred CCCCCC-CCCCHHHHHHH--CCCCCHHHHHHHHH
T ss_conf 488997-02477999701--56876788999999
No 140
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.78 E-value=5.3e-07 Score=75.83 Aligned_cols=227 Identities=19% Similarity=0.248 Sum_probs=121.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC---CCCC
Q ss_conf 6745948999999999987410123656651289872678616889999999872377653002244774034---5320
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK---HSVS 644 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~---~~vs 644 (853)
..|.||+.|..++ ..+-+|-. .+|+.||+|+|||.||+.|.-.|=. ++..|..|- ||++
T Consensus 191 ~dv~Gq~~akral----eIAAAGgH-------nlLl~GpPG~GKTMlA~rlp~ILPp-------Lt~~e~lEv~~I~Sva 252 (506)
T PRK09862 191 SDVVGQEQGKRGL----EITAAGGH-------NLLLIGPPGTGKTMLASRINGLLPD-------LSNEEALESAAILSLV 252 (506)
T ss_pred HHHCCCHHHHHHH----HHHHCCCC-------CEEEECCCCCCHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHH
T ss_conf 6536979999999----99744688-------6598769994598999775123899-------8989999999999871
Q ss_pred HHH------CCC-----------CHHCCCCCCCCC--CHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCC--
Q ss_conf 130------477-----------112035667742--11322156410220214414989999999984045788799--
Q gi|254780877|r 645 RLI------GSP-----------PGYVGYEEGGAL--TEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQ-- 703 (853)
Q Consensus 645 ~Li------Gap-----------pGYvG~~~gg~L--te~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~-- 703 (853)
.+. ..+ ++-|| ||.- -..|-.--+.|++|||+---.++|++.|-|=|++|.++=++
T Consensus 253 g~~~~~~~~~~rPfR~PHHs~S~~aliG---GG~~~~PGEISLAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~ 329 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVG---GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTR 329 (506)
T ss_pred CCCCCCCCCCCCCEECCCCCCCHHHHHC---CCCCCCCCCEEECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 8987777546685037887654766637---9999999722213575788455000688899987762247759999668
Q ss_pred CCEEECCCCEEEECCCH---HHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHH-------------HH
Q ss_conf 97783033155954851---268764032679999999998628857726668158628899899-------------99
Q gi|254780877|r 704 GRTVDFRNTLIIMTSNL---GAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKED-------------MA 767 (853)
Q Consensus 704 G~~v~f~n~iii~TsN~---G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~-------------~~ 767 (853)
|...--.+-..|+++|- |- .......-...-...-...++-.|++|||-.|.-...+... ++
T Consensus 330 ~~~~~PA~F~LVaAmNPCPCG~--~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~~~~l~~~~~~~esS~~ir 407 (506)
T PRK09862 330 AKITYPARFQLVAAMNPSPTGH--YQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVK 407 (506)
T ss_pred CEEEECCHHHHEHHCCCCCCCC--CCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCCHHHHHCCCCCCCCHHHHH
T ss_conf 6798615331111037888888--99997778989999998656622130364799816899666632489898889999
Q ss_pred HHHHHHHHHHHHHHHHCC---------CEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999998579---------89999889999999708982206215799999
Q gi|254780877|r 768 KIVRIQLGRVLSLIKERN---------ISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817 (853)
Q Consensus 768 ~i~~~~l~~l~~~l~~~~---------i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~ 817 (853)
+-+...-+.-.+|....+ -...+++++..++.+..-...+.+|...|++.
T Consensus 408 ~rV~~Ar~~q~~R~~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~riLr 466 (506)
T PRK09862 408 QRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK 466 (506)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999855165657998999765499978999999999965957999999999
No 141
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=1.7e-06 Score=71.81 Aligned_cols=125 Identities=22% Similarity=0.381 Sum_probs=74.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC--C---CCCCHHHHCCCCC
Q ss_conf 6745948999999999987410123656651289872678616889999999872377653--0---0224477403453
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS--M---IRIDMSEYMEKHS 642 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~--l---ir~dMsey~e~~~ 642 (853)
..|+||++++..+.+++...|. --.|||.||.|||||.+|+.+|+.|.-.... - ..-.+...
T Consensus 14 ~evIGQe~iv~~L~nAi~~~Rl--------~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i----- 80 (523)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL--------AHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAA----- 80 (523)
T ss_pred HHCCCCHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-----
T ss_conf 4404949999999999985996--------715875789986889999999999759999998988878889998-----
Q ss_pred CCHHHCCCCHHC--------CCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECC
Q ss_conf 201304771120--------3566774211322156----4102202144149899999999840457887999778303
Q gi|254780877|r 643 VSRLIGSPPGYV--------GYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFR 710 (853)
Q Consensus 643 vs~LiGappGYv--------G~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~ 710 (853)
.-|.-|-++ |-++=-.|.+.++..| |-|+++||.+.-+++-+|.||-.|+|- -.
T Consensus 81 ---~~g~hpDViEiDaasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEP-----------P~ 146 (523)
T PRK08451 81 ---LEGRHIDIIEMDAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-----------PS 146 (523)
T ss_pred ---HCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC-----------CC
T ss_conf ---6489998551055333689999999997235886797279998260304899999999970389-----------87
Q ss_pred CCEEEECCC
Q ss_conf 315595485
Q gi|254780877|r 711 NTLIIMTSN 719 (853)
Q Consensus 711 n~iii~TsN 719 (853)
+++|||.|+
T Consensus 147 ~vvFILaTT 155 (523)
T PRK08451 147 YVKFILATT 155 (523)
T ss_pred CCEEEEECC
T ss_conf 837999759
No 142
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.9e-06 Score=66.78 Aligned_cols=207 Identities=21% Similarity=0.322 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEH----------HHH
Q ss_conf 333578999999963----367778668952887407779999999873489984445743788731----------354
Q gi|254780877|r 180 VIGRDDEMRRAIQVL----SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDM----------GAL 245 (853)
Q Consensus 180 VIGRe~EI~~~~~iL----~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~----------~~l 245 (853)
+-+||+|++++..+| ..-...|.++.|.||+|||+++.-+++.+.+... . .+ .+.++- ..+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~--~~--~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-N--VE--VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-C--CC--EEEEEEEECCCHHHHHHHH
T ss_conf 10348899999999999855899860799889998732899999999973315-6--75--7999513078787999999
Q ss_pred HC---CCCCCCH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHH-HHCCCCEEEEEEECHHHHH
Q ss_conf 21---7454202-45458999999860799769996362773026665543358888765-3124660489974489999
Q gi|254780877|r 246 IA---GAKFRGE-FEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKP-SLARGELHCIGATTLDEYR 320 (853)
Q Consensus 246 ~a---g~~~rg~-~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP-~LarG~l~~IgaTT~~Eyr 320 (853)
.. .....|- .-+-++.+.+.+....+.+|+.+||+-.|+...+ + . .-+++.- ..-...+-+||.+....|.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~-~--LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-E-V--LYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC-C-H--HHHEECCCCCCCEEEEEEEEECCHHHH
T ss_conf 99826899767632689999999777418759999764765415464-1-4--551112477675379999973548899
Q ss_pred HHHHCCHHHHHCCCE--EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 973001113202311--111577767899999997898654149610158999998633320245767477899999999
Q gi|254780877|r 321 KYIEKDPALARRFQS--LLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 321 k~iEkD~Al~RRFq~--i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
.++ |+-+..+|.+ |...+=+.++-..||+.-.. +.+-.=.++++++..|+.++.+.-.| --+|||++..||
T Consensus 170 ~~l--d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~--~~~~~~~~~~~vl~lia~~~a~~~GD---AR~aidilr~A~ 242 (366)
T COG1474 170 DYL--DPRVKSSLGPSEIVFPPYTAEELYDILRERVE--EGFSAGVIDDDVLKLIAALVAAESGD---ARKAIDILRRAG 242 (366)
T ss_pred HHH--HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHH
T ss_conf 987--56676506876355289898999999999998--54046874803999999988761864---776089999999
Q ss_pred HHHH
Q ss_conf 9875
Q gi|254780877|r 399 ARVR 402 (853)
Q Consensus 399 A~~~ 402 (853)
-.+.
T Consensus 243 eiAe 246 (366)
T COG1474 243 EIAE 246 (366)
T ss_pred HHHH
T ss_conf 9865
No 143
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=1.8e-06 Score=71.49 Aligned_cols=58 Identities=14% Similarity=0.293 Sum_probs=23.9
Q ss_pred CEEECC-CCEEEECCCHHHH-HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 778303-3155954851268-7640326799999999986288577266681586288998999999999
Q gi|254780877|r 705 RTVDFR-NTLIIMTSNLGAE-YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRI 772 (853)
Q Consensus 705 ~~v~f~-n~iii~TsN~G~~-~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~ 772 (853)
+.+.|+ |.|++.|.+.+.. .|.+.. ......+.+.+.|.- ...+| .+++....+|.+.
T Consensus 511 kii~~~~~~iv~~~~~~~~~~~in~~~--~~~~~~~~i~~~f~k-------~~~vf-AisK~q~~~i~~~ 570 (613)
T PRK05896 511 KVLWVSPNAIVLLVEDLGLIERINKVN--ISFEFVKTIFKKFNK-------NKLVI-AISKKQATKITNI 570 (613)
T ss_pred EEEEECCCEEEEEECCHHHHHHHHHHH--HHHHHHHHHHHHHCC-------EEEEE-EECHHHHHHHHHH
T ss_conf 699964976999835188999988987--512899999999488-------04999-9757887656416
No 144
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.76 E-value=5.8e-08 Score=83.67 Aligned_cols=219 Identities=20% Similarity=0.288 Sum_probs=141.5
Q ss_pred HHH--HHCCHHHHHHHHHHHHHHHHC-CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH------CCCC-CCCCCCCHH
Q ss_conf 776--745948999999999987410-123656651289872678616889999999872------3776-530022447
Q gi|254780877|r 566 ISK--SVIGQSAAVESVSNALRRFRA-GLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL------FDDE-NSMIRIDMS 635 (853)
Q Consensus 566 l~~--~v~gq~~ai~~v~~~~~~~~~-gl~~~~~p~~~flf~GptGvGKTelak~la~~l------f~~~-~~lir~dMs 635 (853)
+=+ +++|=|+-|+.++.+++-... |-. |- ..+.-||||||||-.+|.+.+.| ++.. =..+.+||.
T Consensus 13 ~Pden~i~hRdeqI~~l~~~L~~~l~PG~~----P~-Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~ 87 (383)
T TIGR02928 13 VPDENRIVHRDEQIEELAKALRPILRPGSR----PS-NIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQ 87 (383)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCC----CC-CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 027424668678999999998875067489----87-2588788898788999999999999862269971589997785
Q ss_pred HHCCCCCC-----CHH----HCCCCHHCCCCCC---CCCCHHHH-C-CCCCEEEEHHHHHC---CHH---HHHHHHHHHH
Q ss_conf 74034532-----013----0477112035667---74211322-1-56410220214414---989---9999999840
Q gi|254780877|r 636 EYMEKHSV-----SRL----IGSPPGYVGYEEG---GALTEAVR-R-HPYQVVLFDEIEKA---HSD---VHNILLQVLD 695 (853)
Q Consensus 636 ey~e~~~v-----s~L----iGappGYvG~~~g---g~Lte~vr-~-~P~sVil~DEiEKa---h~~---v~~~llqild 695 (853)
.+.....+ ..| .|.-+=+-|+-.- ..|.+.+. . ...-||.||||++- +.+ .-.+|+|+.-
T Consensus 88 ~~~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~L~R 167 (383)
T TIGR02928 88 ILDTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDDDPAYSKLLYQLSR 167 (383)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHH
T ss_conf 46846999999999851577888898877878999999999983201887999862310221588888078788534331
Q ss_pred CCEEECCCCCEEE-CCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 4578879997783-033155954851268764032679999999998628857726668158628899899999999999
Q gi|254780877|r 696 DGRLTDSQGRTVD-FRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 696 ~G~ltd~~G~~v~-f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
-.. +| .++ ++=++|-.|.+ -+..+.+.+.++..|.| +-|.|.|++.++++.|+...
T Consensus 168 a~~----~~-~~~~~~vgvIgISND----------~~f~~~Ld~RVkSsL~~-------eei~FpPYdA~eL~~IL~~R- 224 (383)
T TIGR02928 168 ARE----NG-DLENAKVGVIGISND----------LKFRENLDPRVKSSLCE-------EEIVFPPYDAEELRDILENR- 224 (383)
T ss_pred HHH----CC-CCCCCCEEEEEEECC----------CHHHHHCCCCEECCCCC-------CCCEECCCCHHHHHHHHHHH-
T ss_conf 000----35-778853489998657----------14364457530132487-------40040798869999999720-
Q ss_pred HHHHHHH-HHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 9999999-8579899998899999997089822062157999998
Q gi|254780877|r 775 GRVLSLI-KERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 775 ~~l~~~l-~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
. ..--..=.++|.|+...+.-+=...--||--=+.++.
T Consensus 225 ------~v~~AF~dGvl~d~VI~lcAA~aAq~hGDAR~AiDLLR~ 263 (383)
T TIGR02928 225 ------AVEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 263 (383)
T ss_pred ------HHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf ------312033688546227999999862067878999999998
No 145
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.4e-07 Score=78.65 Aligned_cols=199 Identities=23% Similarity=0.307 Sum_probs=127.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHCCCCCC
Q ss_conf 776745948999999999987410123656651289872678616889999999872377653--002244774034532
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS--MIRIDMSEYMEKHSV 643 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~--lir~dMsey~e~~~v 643 (853)
+-+++.+-++-++++...+.-...| .+|. +++..||||+|||-++|-+++.+...... .+.+|+-+|..+..+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~----~~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRG----ERPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred CCHHCCCHHHHHHHHHHHHHHHHCC----CCCC-CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHH
T ss_conf 8220103488999999999998558----9986-0799889998732899999999973315675799951307878799
Q ss_pred CHHH----CCCCHHCCCCCC---CCCCHHHH-CCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEE
Q ss_conf 0130----477112035667---74211322-156410220214414989999999984045788799977830331559
Q gi|254780877|r 644 SRLI----GSPPGYVGYEEG---GALTEAVR-RHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLII 715 (853)
Q Consensus 644 s~Li----GappGYvG~~~g---g~Lte~vr-~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii 715 (853)
...| |.+|- -|.... ..|-+.+. +....||.+||++.--..-.++|++++.-.. .. -...++|
T Consensus 90 ~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~---~~-----~~~v~vi 160 (366)
T COG1474 90 LSKILNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG---EN-----KVKVSII 160 (366)
T ss_pred HHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHEECCCC---CC-----CEEEEEE
T ss_conf 9999998268997-6763268999999977741875999976476541546414551112477---67-----5379999
Q ss_pred ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 54851268764032679999999998628857726668158628899899999999999999999985798999988999
Q gi|254780877|r 716 MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853)
Q Consensus 716 ~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853)
+.+|- ....+.+.+.++..|.| .+ |+|.|++.+++..|+....+.. -..-.+++.++
T Consensus 161 ~i~n~---------~~~~~~ld~rv~s~l~~------~~-I~F~pY~a~el~~Il~~R~~~~-------~~~~~~~~~vl 217 (366)
T COG1474 161 AVSND---------DKFLDYLDPRVKSSLGP------SE-IVFPPYTAEELYDILRERVEEG-------FSAGVIDDDVL 217 (366)
T ss_pred EEECC---------HHHHHHHHHHHHHCCCC------CE-EEECCCCHHHHHHHHHHHHHHH-------HCCCCCCHHHH
T ss_conf 97354---------88999875667650687------63-5528989899999999999854-------04687480399
Q ss_pred HHHHHC
Q ss_conf 999970
Q gi|254780877|r 796 DWLSCR 801 (853)
Q Consensus 796 ~~l~~~ 801 (853)
++++..
T Consensus 218 ~lia~~ 223 (366)
T COG1474 218 KLIAAL 223 (366)
T ss_pred HHHHHH
T ss_conf 999998
No 146
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.75 E-value=5.7e-07 Score=75.60 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf 333578999999963367778668-9528874077799999998734899844457437887313542174542024545
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNNPV-LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEER 258 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n~~-lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r 258 (853)
++|.....-..+.-......+|++ +.|++|.|||.+.++++..+... +++++.++...+ ...
T Consensus 18 i~~~N~~~~~~l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-------~~~~~yl~~~~~----------~~~ 80 (226)
T TIGR03420 18 YAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAEL----------AQA 80 (226)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-------CCCEEEECHHHH----------HHH
T ss_conf 658679999999987646688869998999998899999999998626-------995799529998----------775
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHC---CCE
Q ss_conf 89999998607997699963627730266655433588887653124660489974489999973001113202---311
Q gi|254780877|r 259 LKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARR---FQS 335 (853)
Q Consensus 259 ~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RR---Fq~ 335 (853)
...+++.++.. -+|+||++|.+.|....+-. .-+++--...+|.--+|+++++-..-+...+| |..| +..
T Consensus 81 ~~~~l~~l~~~---d~l~iDDi~~i~~~~~~e~~--lF~l~N~~~~~~~~ilits~~~p~~l~~~l~d--L~SRl~~~~~ 153 (226)
T TIGR03420 81 DPEVLEGLEQA---DLVCLDDVEAIAGQPEWQEA--LFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD--LRTRLAWGLV 153 (226)
T ss_pred HHHHHHHCCCC---CEEEEECHHHHCCCHHHHHH--HHHHHHHHHHHCCEEEEECCCCHHHCCCCHHH--HHHHHHCCCE
T ss_conf 39999727448---99999663334378378999--99999999865282898678882320320177--9999968856
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 111577767899999997898654149610158999998633320
Q gi|254780877|r 336 LLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY 380 (853)
Q Consensus 336 i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY 380 (853)
+.+++|+.++-..||+... .-+++.++++++.+.++-..|=
T Consensus 154 ~~I~~pdd~~~~~iL~k~~----~~r~i~i~~~vi~yl~~r~~R~ 194 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRA----ARRGLQLPDEVADYLLRHGSRD 194 (226)
T ss_pred EECCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCC
T ss_conf 8527999999999999999----9859988999999999863798
No 147
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=3.6e-06 Score=69.12 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=80.4
Q ss_pred CCCCCCHHHHHHHHHH----CCCCHHHHH-HHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9870259998766872----775178899-97599989999999987377887877754676107886443569987298
Q gi|254780877|r 102 GDSFVTAEKFLLAMVM----ETGGIGESL-KKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKKYCRDLTEEARNGK 176 (853)
Q Consensus 102 g~~~I~~ehLLlAIl~----e~~s~a~iL-~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~L~ky~~DLTe~Ar~Gk 176 (853)
-++.|+.+|++-+|.. .+-.++++| -.-|+-+..+-..+.+..+-.......+-...+ -+....+|.
T Consensus 15 f~e~vGQ~~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~--------~C~~i~~g~ 86 (816)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR--------ACREIDEGR 86 (816)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCH--------HHHHHHCCC
T ss_conf 766238499999999999709863147511789888889999999986789999989787755--------578775588
Q ss_pred CCCCCC-------HHHHHHHHHHHHC---CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCC-----------
Q ss_conf 533333-------5789999999633---6777866895288740777999999987348998444574-----------
Q gi|254780877|r 177 LDPVIG-------RDDEMRRAIQVLS---RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGK----------- 235 (853)
Q Consensus 177 LDPVIG-------Re~EI~~~~~iL~---r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~----------- 235 (853)
.--||- .-++++.+++-.. -+.+--+.||-|--.=-+.--..|-+-+ +. -|++.+..
T Consensus 87 ~~d~iEiDaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtl-Ee-pP~hv~FilaTTd~~k~p~ 164 (816)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTL-EE-PPPHVKFILATTDPQKIPV 164 (816)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHH-CC-CCCCEEEEEECCCHHHCCH
T ss_conf 775478635543576899999986224786674479998415433999999999840-37-9866489995588011528
Q ss_pred ----EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEE
Q ss_conf ----378873135421745420245458999999860799769996362773026665543-358888765312466048
Q gi|254780877|r 236 ----RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA-MDASNLLKPSLARGELHC 310 (853)
Q Consensus 236 ----~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~-~Daan~LKP~LarG~l~~ 310 (853)
|-..+++..|- ..+.-++|..|+. .++ |-|=++.-.++ |-.++|| -||-+||.-+++-|.
T Consensus 165 tilSRc~~f~l~~~~-----~~~i~~~l~~i~~----~E~--i~~e~~al~li-a~~a~GsmRDalsl~dQaia~~~--- 229 (816)
T PRK07003 165 TVLSRCLQFNLKQMP-----AGHIVSHLERILG----EER--IAFEPQALRLL-ARAAQGSMRDALSLTDQAIAYSA--- 229 (816)
T ss_pred HHHHHHHHCCCCCCC-----HHHHHHHHHHHHH----HCC--CCCCHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCC---
T ss_conf 898777652236799-----9999999999999----829--97799999999-99767737888859999998469---
Q ss_pred EEEECHHHHHH
Q ss_conf 99744899999
Q gi|254780877|r 311 IGATTLDEYRK 321 (853)
Q Consensus 311 IgaTT~~Eyrk 321 (853)
|..|.+.-+.
T Consensus 230 -g~~~~~~v~~ 239 (816)
T PRK07003 230 -NEVTETAVSG 239 (816)
T ss_pred -CCCCHHHHHH
T ss_conf -9737999999
No 148
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.73 E-value=1.2e-06 Score=73.13 Aligned_cols=152 Identities=22% Similarity=0.265 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH--HH
Q ss_conf 3333578999999963367778668952887407779999999873489984445743788731354217454202--45
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE--FE 256 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~--~e 256 (853)
.++|+++++..+..-+.... +++|.|+||||||.+++.+|+.+... ...+.+ ..-+..+---|. |.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~~--------~~~i~~--t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGLP--------FVRIQC--TPDLLPSDLLGTYAYA 92 (329)
T ss_pred CCCCCHHHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHCCC--------CEEEEC--CCCCCHHHHCCHHHHH
T ss_conf 55266999999999998599--77877989877799999999983898--------189956--8998888820568887
Q ss_pred HHHHH--HHHHHHH-CCCC--EEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--------------CCEEEEEEECHH
Q ss_conf 45899--9999860-7997--699963627730266655433588887653124--------------660489974489
Q gi|254780877|r 257 ERLKS--LLCEIRS-EDGE--IILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--------------GELHCIGATTLD 317 (853)
Q Consensus 257 ~r~~~--i~~~~~~-~~~~--~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--------------G~l~~IgaTT~~ 317 (853)
.+.+. ....... -..+ .|||+|||-.. ..+.-|.|-++|.. -.+.+|++..+.
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra--------~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRA--------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred HHHCCCCEEEEECCCCCCCCCEEEEEECCCCC--------CHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf 66425771898468733451338998703458--------9889999999997268970796653379987899826867
Q ss_pred HHHHHHHCCHHHHHCC-CEEECCCCCHHHHHHHH
Q ss_conf 9999730011132023-11111577767899999
Q gi|254780877|r 318 EYRKYIEKDPALARRF-QSLLVGEPTVTDTISIL 350 (853)
Q Consensus 318 Eyrk~iEkD~Al~RRF-q~i~V~Eps~~~t~~iL 350 (853)
||--..+-..|+.+|| =.+.|.-|..++...++
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred CCCCCCCCCHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf 6578878998888103887764899738899999
No 149
>KOG0734 consensus
Probab=98.73 E-value=4.3e-07 Score=76.58 Aligned_cols=155 Identities=28% Similarity=0.479 Sum_probs=103.5
Q ss_pred CCCCCCCCCHH---HHHHHHHHHH---------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEE
Q ss_conf 29853333357---8999999963---------36777866895288740777999999987348998444574378873
Q gi|254780877|r 174 NGKLDPVIGRD---DEMRRAIQVL---------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALD 241 (853)
Q Consensus 174 ~GkLDPVIGRe---~EI~~~~~iL---------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld 241 (853)
+-+++-|-|-| .|++++++-| ..|--..++|||+||.|||-++...|- +..||-+.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG---EA~VPFF~--------- 367 (752)
T KOG0734 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG---EAGVPFFY--------- 367 (752)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---CCCCCEEE---------
T ss_conf 655002147278999999999986090876431475888538768999755699998605---56897474---------
Q ss_pred HHHHHCCC----CCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHH-HHHHHHH-------CCCCEE
Q ss_conf 13542174----54202454589999998607997699963627730266655433588-8876531-------246604
Q gi|254780877|r 242 MGALIAGA----KFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDAS-NLLKPSL-------ARGELH 309 (853)
Q Consensus 242 ~~~l~ag~----~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daa-n~LKP~L-------arG~l~ 309 (853)
.||. .|.|.=..|++.+....++. .++|+|||||..+ |..+....+--+ .-|-..| -.-.+-
T Consensus 368 ----~sGSEFdEm~VGvGArRVRdLF~aAk~~-APcIIFIDEiDav-G~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI 441 (752)
T KOG0734 368 ----ASGSEFDEMFVGVGARRVRDLFAAAKAR-APCIIFIDEIDAV-GGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII 441 (752)
T ss_pred ----CCCCCHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEEECHHHH-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf ----1662044542201489999999998734-9859997200220-566786277899989999999842867688669
Q ss_pred EEEEECHHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHHHHHHH
Q ss_conf 8997448999997300111320--2311-1115777678999999
Q gi|254780877|r 310 CIGATTLDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDTISILR 351 (853)
Q Consensus 310 ~IgaTT~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~ 351 (853)
+||||-.-|- =|+||.| ||.+ |.|.-|++.--.+||.
T Consensus 442 vigATNfpe~-----LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734 442 VIGATNFPEA-----LDKALTRPGRFDRHVTVPLPDVRGRTEILK 481 (752)
T ss_pred EEECCCCHHH-----HHHHHCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 9951687455-----568734887553367468977332899999
No 150
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=98.72 E-value=5.5e-07 Score=75.72 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=137.3
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC-CCCHHHCCCEEEEEEHHHHHCCCC
Q ss_conf 8729853333357899999996336777866895288740777999999987348-998444574378873135421745
Q gi|254780877|r 172 ARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIING-DIPESLKGKRLMALDMGALIAGAK 250 (853)
Q Consensus 172 Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~-~vp~~l~~~~i~~ld~~~l~ag~~ 250 (853)
-|=-.+.-|+|-|.=|+-++-=|+--.=..+||-||||||||+.+. ||.-=++. .-.++-.+...+++| ||+
T Consensus 149 LRP~~f~EiVGQerAI~aLlaK~aSPfPQHiiLYGPPGVGKTTaAR-l~LEe~K~~~~tPF~~DA~FvEVD------GtT 221 (616)
T TIGR02903 149 LRPRAFSEIVGQERAIKALLAKLASPFPQHIILYGPPGVGKTTAAR-LALEEAKKLKNTPFAEDAPFVEVD------GTT 221 (616)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH-HHHHHCCCCCCCCCCCCCCEEEEC------CCC
T ss_conf 2876676433346899999976318886607855733884789999-987621368744761137857515------762
Q ss_pred CCCHHHHHH----------------------------HHHHHHHHHCCCCEEEEECCHHHH---CC--------CCCC--
Q ss_conf 420245458----------------------------999999860799769996362773---02--------6665--
Q gi|254780877|r 251 FRGEFEERL----------------------------KSLLCEIRSEDGEIILFIDELHVL---VG--------AGKT-- 289 (853)
Q Consensus 251 ~rg~~e~r~----------------------------~~i~~~~~~~~~~~ilfide~h~~---~g--------aG~~-- 289 (853)
.|=|==|=- .+|+-+ +.|. |||||||=-| +. -.+-
T Consensus 222 LRWDPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~---AHGG-vLFIDEIGELD~lLQnKLLKVLEDKrV~F 297 (616)
T TIGR02903 222 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTD---AHGG-VLFIDEIGELDPLLQNKLLKVLEDKRVEF 297 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC---CCCC-EEEEECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 6677410147767762576556764011047879898987100---4775-67650211222787632444322643665
Q ss_pred CCC---CCHHHH---HHHHHCCC---CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 543---358888---76531246---604899744899999730011132023111115777678999999978986541
Q gi|254780877|r 290 DGA---MDASNL---LKPSLARG---ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQH 360 (853)
Q Consensus 290 ~g~---~Daan~---LKP~LarG---~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~ 360 (853)
++| -|=-|+ +|-.-..| ++=.|||||-+= =|=+|||-.|-.-|.-++-|.++-..|.+.-+.+.
T Consensus 298 ~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P----~eINpALRSRCaEvfFePL~p~dI~~Iv~~AA~kl--- 370 (616)
T TIGR02903 298 SSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIKEIVLNAAEKL--- 370 (616)
T ss_pred EECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCH----HHCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHC---
T ss_conf 32124875378655888852268882568726615882----44051233014313217988789999999988861---
Q ss_pred CCCCCCHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 49610158999998633320-24576747789999999998754
Q gi|254780877|r 361 HKVRISDSALVSAAVLSNRY-ITDRFLPDKAIDLMDEASARVRM 403 (853)
Q Consensus 361 H~V~i~d~al~~av~ls~rY-i~~r~lPDKAIDllDeA~A~~~i 403 (853)
+|...++.=+... +| |.+| |||.+|=-+=+.+.-
T Consensus 371 -nv~L~~gV~e~Ia----~YTieGR----kAvnILAD~Yg~~ly 405 (616)
T TIGR02903 371 -NVKLAEGVEELIA----RYTIEGR----KAVNILADVYGYALY 405 (616)
T ss_pred -CCCCCCCHHHHHH----HCCCCCH----HHHHHHHHHHHHHHH
T ss_conf -7700036487872----1471311----222346546767653
No 151
>KOG0733 consensus
Probab=98.72 E-value=2.2e-06 Score=70.77 Aligned_cols=215 Identities=24% Similarity=0.432 Sum_probs=141.2
Q ss_pred HHHHCCCCH-HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC--CC---CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 687277517-8899975999899999999873778878777--54---67610788644356998729853333357899
Q gi|254780877|r 114 AMVMETGGI-GESLKKCGLKFSRLEESIKKLRKGRVADSVN--AE---QGFDALKKYCRDLTEEARNGKLDPVIGRDDEM 187 (853)
Q Consensus 114 AIl~e~~s~-a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~--~e---~~~~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI 187 (853)
++....++. .+.+..+.+.++++.+.+..+.+...-.... |. ...-+|++.-.-|+.... -|+ +-.|
T Consensus 463 ~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~----~Pi--K~pd- 535 (802)
T KOG0733 463 AILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAIL----API--KRPD- 535 (802)
T ss_pred HHHHCCCCCCHHHHCCCEECHHHHHHHHHHCCCCHHCCCCEECCCCCHHHCCCHHHHHHHHHHHHH----HHC--CCHH-
T ss_conf 997189986867735661019999999985593020365132699876641249999999999986----002--3888-
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999633677786689528874077799999998734899844457437887313542174542024545899999986
Q gi|254780877|r 188 RRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIR 267 (853)
Q Consensus 188 ~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~ 267 (853)
+.+-|.=..-..++|-|+||.|||-++...|.- .+.-.+++--.-|+ -+|.||=|.-++.+..-+.
T Consensus 536 --~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANE----------ag~NFisVKGPELl--NkYVGESErAVR~vFqRAR 601 (802)
T KOG0733 536 --LFKALGIDAPSGVLLCGPPGCGKTLLAKAVANE----------AGANFISVKGPELL--NKYVGESERAVRQVFQRAR 601 (802)
T ss_pred --HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH----------CCCCEEEECCHHHH--HHHHHHHHHHHHHHHHHHH
T ss_conf --999828889872387579986188999998503----------04754762388999--8774237899999999862
Q ss_pred HCCCCEEEEECCHHHHCCCC---CCCCCCCHHHHHHHHH----CCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCEE-E
Q ss_conf 07997699963627730266---6554335888876531----2466048997448999997300111320--23111-1
Q gi|254780877|r 268 SEDGEIILFIDELHVLVGAG---KTDGAMDASNLLKPSL----ARGELHCIGATTLDEYRKYIEKDPALAR--RFQSL-L 337 (853)
Q Consensus 268 ~~~~~~ilfide~h~~~gaG---~~~g~~Daan~LKP~L----arG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~i-~ 337 (853)
++ .+.|+|+||+..|+.-- .++++.-+-|-|--.| .|-.+-+||||---. .| |+|+-| ||.++ .
T Consensus 602 ~s-aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD---iI--DpAiLRPGRlDk~Ly 675 (802)
T KOG0733 602 AS-APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD---II--DPAILRPGRLDKLLY 675 (802)
T ss_pred CC-CCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC---CC--CHHHCCCCCCCCEEE
T ss_conf 38-9838985111202765577775058999999998731621114259995068976---55--565518775574245
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 157776789999999789
Q gi|254780877|r 338 VGEPTVTDTISILRGLKE 355 (853)
Q Consensus 338 V~Eps~~~t~~iL~gl~~ 355 (853)
|.-|+.++-..||+.+..
T Consensus 676 V~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733 676 VGLPNAEERVAILKTITK 693 (802)
T ss_pred ECCCCHHHHHHHHHHHHC
T ss_conf 069987889999999853
No 152
>PRK04132 replication factor C small subunit; Provisional
Probab=98.71 E-value=1.9e-08 Score=87.66 Aligned_cols=54 Identities=30% Similarity=0.510 Sum_probs=45.4
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 998729853333357899999996336777866895288740777999999987
Q gi|254780877|r 170 EEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRI 223 (853)
Q Consensus 170 e~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i 223 (853)
++.|-.+||-++|-|.=+.|+-.-.-+..=.+-+.-||||||||+-.-.||...
T Consensus 17 EKYRPk~LddIVgQehIVkRLK~YVk~~smPHLLFaGPPGvGKt~~al~lar~l 70 (863)
T PRK04132 17 EKYRPQRLDEIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (863)
T ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 531876165522749999999988623888544304899877144788888876
No 153
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.70 E-value=5.2e-06 Score=67.82 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-HHHCCCEEEEEEHHHHHC---CCCCCC----HH
Q ss_conf 7899999996336777866895288740777999999987348998-444574378873135421---745420----24
Q gi|254780877|r 184 DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIP-ESLKGKRLMALDMGALIA---GAKFRG----EF 255 (853)
Q Consensus 184 e~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp-~~l~~~~i~~ld~~~l~a---g~~~rg----~~ 255 (853)
-+|.-..+.-..+.++.-.+++||+|+|||+++..|+..+-...+. ..+.+..+=.-++-..++ |..+.+ ++
T Consensus 28 h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~~~~~~~~~ 107 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAAL 107 (269)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 99999999999964896599972998988999999998459345489997699999999999999985989889899999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHH----HC-CCCEEEEEEECHHHHHHHHHCC--HH
Q ss_conf 54589999998607997699963627730266655433588887653----12-4660489974489999973001--11
Q gi|254780877|r 256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPS----LA-RGELHCIGATTLDEYRKYIEKD--PA 328 (853)
Q Consensus 256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~----La-rG~l~~IgaTT~~Eyrk~iEkD--~A 328 (853)
-..+...+.+.......++|.|||.|.+ +.|+-+-|+=. .. ..-+++|-.-.|+ .+..+... ..
T Consensus 108 ~~~l~~~L~~~~~~g~~~vliIDEAq~L--------~~~~Le~Lr~L~n~e~~~~~ll~iiL~Gqpe-L~~~L~~~~~~~ 178 (269)
T TIGR03015 108 LRELEDFLIEQFAAGKRALLVVDEAQNL--------TPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQ 178 (269)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHC--------CHHHHHHHHHHHCCCCCCCCCEEEEEECCHH-HHHHHCCCCHHH
T ss_conf 9999999999996699469997242219--------9999999999970135888704899957867-999872740254
Q ss_pred HHHC-CCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3202-311111577767899999997898654149610158999998633320
Q gi|254780877|r 329 LARR-FQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY 380 (853)
Q Consensus 329 l~RR-Fq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY 380 (853)
|..| -....+..-|.++|...++.--..=...+..-++++|+......|.=+
T Consensus 179 l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~ 231 (269)
T TIGR03015 179 LRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI 231 (269)
T ss_pred HHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 55507679984799989999999999986699999985999999999986990
No 154
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=5.2e-06 Score=67.78 Aligned_cols=46 Identities=11% Similarity=0.269 Sum_probs=23.0
Q ss_pred HHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEE--EEECCHHHH
Q ss_conf 444574378873135421745420245458999999860799769--996362773
Q gi|254780877|r 230 ESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEII--LFIDELHVL 283 (853)
Q Consensus 230 ~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~i--lfide~h~~ 283 (853)
+.-..++||-+|-.-|++.. -+.++++-+++.+..+| |.-.|.|.|
T Consensus 114 P~~gkYKVyIIDEvHMLS~~--------AfNALLKtLEEPP~hvvFILaTTep~KI 161 (718)
T PRK07133 114 PQISKYKIYIIDEVHMLSKS--------AFNALLKTLEEPPKHVIFILATTDVQKI 161 (718)
T ss_pred CCCCCEEEEEEECCCCCCHH--------HHHHHHHHHCCCCCCCEEEEEECCHHHC
T ss_conf 87787249999662007999--------9999998502798782799970882548
No 155
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.68 E-value=5.7e-07 Score=75.63 Aligned_cols=199 Identities=24% Similarity=0.357 Sum_probs=132.7
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 35547767459489999999999874101236566512898726786168899999998723776530022447740345
Q gi|254780877|r 562 IETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641 (853)
Q Consensus 562 l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~ 641 (853)
+.-+.-+..+||++..+.+.-.|+-++ ..+.++.-.||.||+|.|||.||..+|..|-. ++ +
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk----~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---n~-k---------- 81 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAK----KRGEALDHVLLFGPPGLGKTTLAHIIANELGV---NL-K---------- 81 (332)
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHH----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CE-E----------
T ss_conf 586548885183999999999999998----44987674786479987688899999998567---73-7----------
Q ss_pred CCCHHHCCCCHHCC-CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC--CCC---CEEEC--C-CC
Q ss_conf 32013047711203-5667742113221564102202144149899999999840457887--999---77830--3-31
Q gi|254780877|r 642 SVSRLIGSPPGYVG-YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTD--SQG---RTVDF--R-NT 712 (853)
Q Consensus 642 ~vs~LiGappGYvG-~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd--~~G---~~v~f--~-n~ 712 (853)
+-|-|---- -|=-+.||+ -.|+.|++.|||...+|.|-.+|+-.|+|-++-= +.| |.|.. . =|
T Consensus 82 -----~tsGp~leK~gDlaaiLt~---Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 82 -----ITSGPALEKPGDLAAILTN---LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -----ECCCCCCCCHHHHHHHHHC---CCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEE
T ss_conf -----6366201572659999863---98677677725531474289896467531057789724875534763799813
Q ss_pred EEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 55954851268764032679999999998628857726668158628899899999999999999999985798999988
Q gi|254780877|r 713 LIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDD 792 (853)
Q Consensus 713 iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~ 792 (853)
+|=.|+-+|. ....+..|+.-+.-++-++.+++.+|+.+.- +-..+++++
T Consensus 154 LIGATTr~G~---------------------lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a---------~~l~i~i~~ 203 (332)
T COG2255 154 LIGATTRAGM---------------------LTNPLRDRFGIIQRLEFYTVEELEEIVKRSA---------KILGIEIDE 203 (332)
T ss_pred EEEECCCCCC---------------------CCCHHHHHCCCEEEEECCCHHHHHHHHHHHH---------HHHCCCCCH
T ss_conf 7510134664---------------------5633688628604540588899999999888---------873877685
Q ss_pred HHHHHHHHCCC-CCCCCCHHHHHHH
Q ss_conf 99999997089-8220621579999
Q gi|254780877|r 793 QVIDWLSCRGY-DPSYGARPLKRVI 816 (853)
Q Consensus 793 ~~~~~l~~~~~-~~~~GaR~l~r~i 816 (853)
++...|+.++- .|..--|=|||+-
T Consensus 204 ~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 204 EAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 7999999863699389999999999
No 156
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.67 E-value=2.6e-06 Score=70.20 Aligned_cols=217 Identities=26% Similarity=0.406 Sum_probs=156.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
..|+|...++..+....++.- ..+ .+.|..|-||+||--+|+++-..=--...+||++||.-.-|.--=|-|+
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A----~td---stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELF 317 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIA----KTD---STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELF 317 (560)
T ss_pred HHHCCCCHHHHHHHHHHHHHC----CCC---CCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 002058999999999998633----899---8289953788668999999874484347980787643388888888872
Q ss_pred CCCCHHCCCCCCCCCCHHHHC-CC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEE---CCCCCEEECCCCEEEE
Q ss_conf 477112035667742113221-56-------410220214414989999999984045788---7999778303315595
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRR-HP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLT---DSQGRTVDFRNTLIIM 716 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~-~P-------~sVil~DEiEKah~~v~~~llqild~G~lt---d~~G~~v~f~n~iii~ 716 (853)
| |+ .|.-|.|.+. +| ..-++||||--.....+--||.+|.|+.+- +.....||.| ||.
T Consensus 318 G-------ye-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR---IIA 386 (560)
T COG3829 318 G-------YE-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR---IIA 386 (560)
T ss_pred C-------CC-CCCCCCCCCCCCCCCEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCEEEEEE---EEE
T ss_conf 7-------67-764246445799760544169837712320399899999999875353785378875356789---994
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCEEEC-CCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEE-EC
Q ss_conf 485126876403267999999999-862885772666815862-8899--899999999999999999985798999-98
Q gi|254780877|r 717 TSNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEIILF-EKLR--KEDMAKIVRIQLGRVLSLIKERNISMD-FD 791 (853)
Q Consensus 717 TsN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~iv~F-~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~-~~ 791 (853)
++|- ...+.+ .+.||-++.=|++-+-++ -||- ++|+..++...++++.+++ +-.+. ++
T Consensus 387 ATN~--------------nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~---~~~v~~ls 449 (560)
T COG3829 387 ATNR--------------NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRY---GRNVKGLS 449 (560)
T ss_pred CCCC--------------CHHHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCC
T ss_conf 2575--------------899998639616553003040111477723382018999999999999872---88766689
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 899999997089822062157999998733
Q gi|254780877|r 792 DQVIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 792 ~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
+++...|.. |+---..|.|...|++.+.
T Consensus 450 ~~a~~~L~~--y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 450 PDALALLLR--YDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHH--CCCCCHHHHHHHHHHHHHH
T ss_conf 999999986--8999609999999999981
No 157
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=2e-06 Score=71.16 Aligned_cols=195 Identities=17% Similarity=0.136 Sum_probs=82.3
Q ss_pred CCCCCCHHHHHHHHHH----CCCCHHHHH-HHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH---H-HHHHHHHHHH-
Q ss_conf 9870259998766872----775178899-9759998999999998737788787775467610---7-8864435699-
Q gi|254780877|r 102 GDSFVTAEKFLLAMVM----ETGGIGESL-KKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDA---L-KKYCRDLTEE- 171 (853)
Q Consensus 102 g~~~I~~ehLLlAIl~----e~~s~a~iL-~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~---L-~ky~~DLTe~- 171 (853)
-.+.|+.+|++-++.. .+-.++++| -.-|+-+..+-..+.+..+-.......+-..... + +--..|+.+.
T Consensus 15 f~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d~~EiD 94 (717)
T PRK08853 15 FKEVVGQSHVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVDLLEID 94 (717)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEC
T ss_conf 65513859999999999970997405761088988898999999998678999999978887026767447877524540
Q ss_pred -HHCCCCCCCCCHHHHHHHHHHH---HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCC------------
Q ss_conf -8729853333357899999996---336777866895288740777999999987348998444574------------
Q gi|254780877|r 172 -ARNGKLDPVIGRDDEMRRAIQV---LSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGK------------ 235 (853)
Q Consensus 172 -Ar~GkLDPVIGRe~EI~~~~~i---L~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~------------ 235 (853)
|-..+ -+++|.+++- .--+.|--+.+|-|--.=-++--..|-+-+-+ -|+..+..
T Consensus 95 aAs~~~-------vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEE--PP~hv~FilaTT~~~kip~T 165 (717)
T PRK08853 95 AASRTK-------VEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEYVKFLLATTDPQKLPVT 165 (717)
T ss_pred CCCCCC-------HHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--CCCCEEEEEECCCHHHCCHH
T ss_conf 565678-------899999998555488778547999830544389999999876037--87564899843873437388
Q ss_pred ---EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEE
Q ss_conf ---378873135421745420245458999999860799769996362773026665543-3588887653124660489
Q gi|254780877|r 236 ---RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA-MDASNLLKPSLARGELHCI 311 (853)
Q Consensus 236 ---~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~-~Daan~LKP~LarG~l~~I 311 (853)
|-..+++..|- ..+.-++|..|+ ..++ |=|=++.-.++ |..++|| -||-.+|.-+++-|.
T Consensus 166 ilSRc~~f~l~~~~-----~~~i~~~l~~i~----~~E~--i~~~~~al~~i-a~~a~Gs~Rdalsl~dqaia~~~---- 229 (717)
T PRK08853 166 ILSRCLQFHLKPIS-----VDQIHQQLDFVL----DKEQ--VSAEARALGLI-AHAADGSMRDALSLTDQAIALGN---- 229 (717)
T ss_pred HHHHHHHCCCCCCC-----HHHHHHHHHHHH----HHCC--CCCCHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCC----
T ss_conf 98765442326899-----999999999999----9759--87699999999-99768837788889999999658----
Q ss_pred EEECHHHHHH
Q ss_conf 9744899999
Q gi|254780877|r 312 GATTLDEYRK 321 (853)
Q Consensus 312 gaTT~~Eyrk 321 (853)
|..|.+.-+.
T Consensus 230 g~~~~~~v~~ 239 (717)
T PRK08853 230 GQVTTDIVSH 239 (717)
T ss_pred CCCCHHHHHH
T ss_conf 9716999999
No 158
>KOG0727 consensus
Probab=98.67 E-value=6.9e-07 Score=74.93 Aligned_cols=141 Identities=30% Similarity=0.568 Sum_probs=91.5
Q ss_pred HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH
Q ss_conf 10123656651289872678616889999999872377653002244774034532013047711203566774211322
Q gi|254780877|r 588 RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR 667 (853)
Q Consensus 588 ~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr 667 (853)
..|+.. |.|++|| ||+|.|||.|||++|..- .-++||...||| |.+-+|-.|-.|-- .-.--|
T Consensus 183 qigidp---prgvlly-gppg~gktml~kava~~t---~a~firvvgsef-----vqkylgegprmvrd-----vfrlak 245 (408)
T KOG0727 183 QIGIDP---PRGVLLY-GPPGTGKTMLAKAVANHT---TAAFIRVVGSEF-----VQKYLGEGPRMVRD-----VFRLAK 245 (408)
T ss_pred HHCCCC---CCCEEEE-CCCCCCHHHHHHHHHHCC---CHHEEEECCHHH-----HHHHHCCCCHHHHH-----HHHHHH
T ss_conf 708899---8622775-799975789999986126---111446301899-----99985548389999-----999876
Q ss_pred CCCCCEEEEHHHHH-----------CCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHH
Q ss_conf 15641022021441-----------4989999999984045788799977830331559548512687640326799999
Q gi|254780877|r 668 RHPYQVVLFDEIEK-----------AHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKV 736 (853)
Q Consensus 668 ~~P~sVil~DEiEK-----------ah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~ 736 (853)
.+.-|+|+.|||+- |..+|+.+|+.+|.. -|+.... .|.-+||.+|- .+....+
T Consensus 246 enapsiifideidaiatkrfdaqtgadrevqril~ellnq---mdgfdq~---~nvkvimatnr--------adtldpa- 310 (408)
T KOG0727 246 ENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ---MDGFDQT---TNVKVIMATNR--------ADTLDPA- 310 (408)
T ss_pred CCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH---CCCCCCC---CCEEEEEECCC--------CCCCCHH-
T ss_conf 1698379862245676641244446318999999999975---1476766---65589983275--------5566876-
Q ss_pred HHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHH
Q ss_conf 9999862885772666815862889989999999
Q gi|254780877|r 737 MGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIV 770 (853)
Q Consensus 737 ~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~ 770 (853)
.++| +|+|.-|-|- |...--++++
T Consensus 311 ------llrp---grldrkiefp-lpdrrqkrlv 334 (408)
T KOG0727 311 ------LLRP---GRLDRKIEFP-LPDRRQKRLV 334 (408)
T ss_pred ------HCCC---CCCCCCCCCC-CCCHHHHHHH
T ss_conf ------6287---6434443577-9854665222
No 159
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=98.66 E-value=1.2e-06 Score=72.92 Aligned_cols=215 Identities=22% Similarity=0.398 Sum_probs=161.1
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653002244774034532013
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L 646 (853)
..-|||.-.|+..|.+.++.. ...| .+.|+-|=||+||=-.||++=+.===-.+.||++||.-..|.===|=|
T Consensus 211 ~~~i~G~Spam~~v~~~~~~v----A~~n---STVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~NCAALse~lLESEL 283 (574)
T TIGR01817 211 EDGIVGKSPAMRQVVDQIKVV----ARSN---STVLLRGESGTGKELIAKAIHELSPRAKRPFVKLNCAALSETLLESEL 283 (574)
T ss_pred CCCCCCCCHHHHHHHHHHHHH----CCCC---CEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 474012478999999886520----1317---667850565744334442340466455788545006447761124545
Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC-C--CCCEEECCCCEEEE
Q ss_conf 047711203566774211322156-------4102202144149899999999840457887-9--99778303315595
Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD-S--QGRTVDFRNTLIIM 716 (853)
Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd-~--~G~~v~f~n~iii~ 716 (853)
+| |++ |--|.||.++- -.=++||||==-.|..+--||-||.||-+-= | +--+||=| ||+
T Consensus 284 FG-------HEK-GAFTGA~~~RkGRFElAdGGTLFLDEIGEISPaFQAKLLRVLQEGEFERVGG~~TlKVdVR---lva 352 (574)
T TIGR01817 284 FG-------HEK-GAFTGAVAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR---LVA 352 (574)
T ss_pred HC-------CCC-HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEEE---EEE
T ss_conf 13-------430-1468887517775330278832000014678568889988752100253278724887367---886
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCEEE--CCCCC--HHHHHHHHHHHHHHHHHHHHHCCCE-EEE
Q ss_conf 485126876403267999999999-86288577266681586--28899--8999999999999999999857989-999
Q gi|254780877|r 717 TSNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEIIL--FEKLR--KEDMAKIVRIQLGRVLSLIKERNIS-MDF 790 (853)
Q Consensus 717 TsN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~iv~--F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~-l~~ 790 (853)
=|| ..+.+++ +..||-+|.=||. ||+ .-||- ..|+-.+++..|++++. +++-. |.+
T Consensus 353 ATN--------------rdLE~aV~~GeFRaDLYYRin-VvPl~lPPLRER~~DIP~LA~~fL~kf~~---en~R~mL~~ 414 (574)
T TIGR01817 353 ATN--------------RDLEEAVAKGEFRADLYYRIN-VVPLILPPLRERREDIPLLAEAFLEKFNR---ENGRPMLTL 414 (574)
T ss_pred CCC--------------CCHHHHHHCCCCCCHHHHHHH-HHHHHCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCEEEE
T ss_conf 137--------------355889727897302355442-22340787778731168999999998766---518720322
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 88999999970898220621579999987
Q gi|254780877|r 791 DDQVIDWLSCRGYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 791 ~~~~~~~l~~~~~~~~~GaR~l~r~i~~~ 819 (853)
+++|++.|.. ||=|.. .|.|..=|++.
T Consensus 415 ~~~Ai~~Lm~-c~wPGN-VRELENC~eRt 441 (574)
T TIGR01817 415 SPSAIRVLMS-CKWPGN-VRELENCVERT 441 (574)
T ss_pred CHHHHHHHHC-CCCCCC-CEEHHHHHHHH
T ss_conf 6789989751-789997-40044378778
No 160
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.66 E-value=6.5e-06 Score=67.03 Aligned_cols=173 Identities=20% Similarity=0.380 Sum_probs=108.6
Q ss_pred CCCHHHHHHH--HHHHHCCCCC-CCEE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC----CCCC
Q ss_conf 3335789999--9996336777-8668-95288740777999999987348998444574378873135421----7454
Q gi|254780877|r 180 VIGRDDEMRR--AIQVLSRRTK-NNPV-LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA----GAKF 251 (853)
Q Consensus 180 VIGRe~EI~~--~~~iL~r~~k-~n~~-lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a----g~~~ 251 (853)
|+|...+.-- ...|-....+ -||+ +-|.+|+|||.+.++++..+.+.. | +++|+.+....++. ..+
T Consensus 122 VvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~-p----~~~v~Y~tae~F~~~~v~al~- 195 (447)
T PRK00149 122 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVSSEKFTNDFVKALR- 195 (447)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCEEEEEEHHHHHHHHHHHHH-
T ss_conf 2269859999999999837676778558977998878899999999999858-9----972899549999999999985-
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE-ECHHHHHHHHHCCHHHH
Q ss_conf 20245458999999860799769996362773026665543358888765312466048997-44899999730011132
Q gi|254780877|r 252 RGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGA-TTLDEYRKYIEKDPALA 330 (853)
Q Consensus 252 rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~Iga-TT~~Eyrk~iEkD~Al~ 330 (853)
. ..+...-+..... -+|.||+||-+-|-.++ ..-.-+++.-....|.-=++.+ ..|.|... + |.-|.
T Consensus 196 -~---~~~~~Fr~~yr~~---DvLliDDiqfl~gk~~t--qeeff~~fn~l~~~~kqiv~tsd~~P~~l~~-l--~~rL~ 263 (447)
T PRK00149 196 -N---NAMEEFKEKYRSV---DVLLIDDIQFLAGKEKT--QEEFFHTFNALHENNKQIVITSDRPPKELEG-L--EDRLR 263 (447)
T ss_pred -C---CCHHHHHHHHHCC---CEEEECHHHHHHCCHHH--HHHHHHHHHHHHHCCCEEEEECCCCHHHCCC-C--CHHHH
T ss_conf -1---8699999999728---85432148886055779--9999999999998499689957889676565-1--17788
Q ss_pred HCCC---EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 0231---1111577767899999997898654149610158999998
Q gi|254780877|r 331 RRFQ---SLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAA 374 (853)
Q Consensus 331 RRFq---~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av 374 (853)
.||+ .+.+++|+.+.-+.||+..... +++.++++++++.+
T Consensus 264 SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~~----~~~~l~~~v~~~iA 306 (447)
T PRK00149 264 SRFEWGLTVDIEPPDLETRVAILQKKAEE----EGINLPNEVLEFIA 306 (447)
T ss_pred HHHHCCEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHH
T ss_conf 67637626510599999999999999997----28999989999999
No 161
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.65 E-value=1.9e-07 Score=79.54 Aligned_cols=200 Identities=24% Similarity=0.308 Sum_probs=125.7
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHCCC--CCHHHCCC----------
Q ss_conf 6998729853333357899999996336777-8668952887407779999999873489--98444574----------
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRTK-NNPVLIGDPGVGKTAIIEGLASRIINGD--IPESLKGK---------- 235 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k-~n~~lvGe~GvGKtaive~la~~i~~~~--vp~~l~~~---------- 235 (853)
-.+.|--.++-|+|-+.=+..+...+...+- +--++-|+-|||||++..-+|.-+.-.+ ..+..-.|
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 98858300777636489999999999808423336513777767104999999995688987777225316668651488
Q ss_pred --EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHCC--CC
Q ss_conf --37887313542174542024545899999986079---976999636277302666554335888-87653124--66
Q gi|254780877|r 236 --RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASN-LLKPSLAR--GE 307 (853)
Q Consensus 236 --~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan-~LKP~Lar--G~ 307 (853)
-|+++|.++= +|= +-++.|++.+.-++ ..-|..|||+||+- --|-| +|| .|.. --
T Consensus 87 ~~DviEiDaASn------~gV--ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLK-TLEEPP~h 149 (515)
T COG2812 87 LIDVIEIDAASN------TGV--DDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLK-TLEEPPSH 149 (515)
T ss_pred CCCCHHHHHHHC------CCH--HHHHHHHHHHCCCCCCCCCEEEEEECHHHHH--------HHHHHHHHC-CCCCCCCC
T ss_conf 641011364445------486--7999999872468866664189983187643--------788888751-11368667
Q ss_pred EEEEEEECHHHHHHHHHCCHH-HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 048997448999997300111-3202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPA-LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~A-l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
+.+|=|||. .+| =|. .-.|-|.-...--+.++-..-|..+.. --++.+.++||....+.|+-=+.|
T Consensus 150 V~FIlATTe--~~K----ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~----~E~I~~e~~aL~~ia~~a~Gs~RD--- 216 (515)
T COG2812 150 VKFILATTE--PQK----IPNTILSRCQRFDFKRLDLEEIAKHLAAILD----KEGINIEEDALSLIARAAEGSLRD--- 216 (515)
T ss_pred EEEEEECCC--CCC----CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 489985388--676----8404552122022257999999999999987----448754799999999982897456---
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 477899999999987
Q gi|254780877|r 387 PDKAIDLMDEASARV 401 (853)
Q Consensus 387 PDKAIDllDeA~A~~ 401 (853)
|..|||.|-+.-
T Consensus 217 ---alslLDq~i~~~ 228 (515)
T COG2812 217 ---ALSLLDQAIAFG 228 (515)
T ss_pred ---HHHHHHHHHHCC
T ss_conf ---777899999706
No 162
>PRK05642 DNA replication initiation factor; Validated
Probab=98.65 E-value=4.8e-06 Score=68.11 Aligned_cols=157 Identities=18% Similarity=0.402 Sum_probs=81.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
.+.+.||+|+|||.|..+++...-......+.++|+++.+.. |... +.+ ..+.++++|.|
T Consensus 47 ~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~---------~~~~---------~~l--~~~d~l~IDDi 106 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG---------PELL---------DNL--EQYELVCIDDL 106 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---------HHHH---------HHH--HHCCEEEEECH
T ss_conf 389988999988999999999998079967997899987544---------9998---------624--22798989364
Q ss_pred HHC--CHH----HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC
Q ss_conf 414--989----99999998404578879997783033155954851268764032679999999998628857726668
Q gi|254780877|r 680 EKA--HSD----VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD 753 (853)
Q Consensus 680 EKa--h~~----v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid 753 (853)
+.- .++ +|++|=++.+.| +-+++||+.....+. ..-|.+..|+-
T Consensus 107 ~~i~g~~~~e~~lF~l~N~~~~~~--------------~~llits~~~P~~l~----------------~~l~DL~SRl~ 156 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRLRDSG--------------RRLLLAASKSPRELP----------------VKLPDLKSRLT 156 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHHC----------------CCHHHHHHHHH
T ss_conf 554688599999999999999839--------------959995787955523----------------00167999995
Q ss_pred --CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf --15862889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r 754 --EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 754 --~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
-++.-.|++.++...|+.. +...+|+ .+++++.+||+++. +..+ |.|..++.+
T Consensus 157 ~~~~~~i~~l~d~~~~~iL~~-------~a~~rgi--~l~~~v~~yl~~r~-~R~~--~~L~~~l~~ 211 (234)
T PRK05642 157 LALVFQMRGLSDEDKLRALQL-------RASRRGL--HLTDEVGHFILTRG-TRSM--SALFDLLER 211 (234)
T ss_pred CCCEEEECCCCHHHHHHHHHH-------HHHHCCC--CCCHHHHHHHHHHC-CCCH--HHHHHHHHH
T ss_conf 781275148998999999999-------9775468--99989999999973-5889--999999999
No 163
>KOG0736 consensus
Probab=98.64 E-value=1.4e-06 Score=72.45 Aligned_cols=221 Identities=22% Similarity=0.380 Sum_probs=114.3
Q ss_pred CCCCCCHHCCCHHHHHHHHHHH-------HCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------H
Q ss_conf 2677200016866789998766-------1786677510000000123554776745948999999999987-------4
Q gi|254780877|r 522 TAEDMVQEVVTSDNIANIVSRW-------TGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRR-------F 587 (853)
Q Consensus 522 ~~~~~~~~~V~~~dVa~vvS~~-------TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~-------~ 587 (853)
.+.-+....++++|+..-.+++ -|-| |+ -+---.-|=|-+++-..|.+.|++ -
T Consensus 632 ~~~~~~~~~l~~edf~kals~~~~~fs~aiGAP----------KI---PnV~WdDVGGLeevK~eIldTIqlPL~hpeLf 698 (953)
T KOG0736 632 GELCAAGFLLTEEDFDKALSRLQKEFSDAIGAP----------KI---PNVSWDDVGGLEEVKTEILDTIQLPLKHPELF 698 (953)
T ss_pred CCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCC----------CC---CCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 540124641019888889889888655530798----------88---96460015578999999998754754375665
Q ss_pred HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCC--CCHH
Q ss_conf 10123656651289872678616889999999872377653002244774034532013047711203566774--2113
Q gi|254780877|r 588 RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGA--LTEA 665 (853)
Q Consensus 588 ~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~--Lte~ 665 (853)
-.|| ||..-.||.||+|+|||-+||++|-.+ .-+++..-..|. + -=|||-.|-.. .-++
T Consensus 699 ssgl----rkRSGILLYGPPGTGKTLlAKAVATEc---sL~FlSVKGPEL---------L---NMYVGqSE~NVR~VFer 759 (953)
T KOG0736 699 SSGL----RKRSGILLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL---------L---NMYVGQSEENVREVFER 759 (953)
T ss_pred HCCC----CCCCEEEEECCCCCCHHHHHHHHHHHC---EEEEEEECCHHH---------H---HHHHCCHHHHHHHHHHH
T ss_conf 1254----313505887799985579999987543---036785058899---------8---87743018889999998
Q ss_pred HHC-CCCCEEEEHHHHHCCHH---------HHH-HHHHHHHC-CEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHH
Q ss_conf 221-56410220214414989---------999-99998404-5788799977830331559548512687640326799
Q gi|254780877|r 666 VRR-HPYQVVLFDEIEKAHSD---------VHN-ILLQVLDD-GRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVH 733 (853)
Q Consensus 666 vr~-~P~sVil~DEiEKah~~---------v~~-~llqild~-G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~ 733 (853)
-|. .| |||+|||++--.|. |+| +.-|+|-| --|.|+ +-+..+||--|| .++=..
T Consensus 760 AR~A~P-CVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~-----~s~~VFViGATN--------RPDLLD 825 (953)
T KOG0736 760 ARSAAP-CVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS-----SSQDVFVIGATN--------RPDLLD 825 (953)
T ss_pred HHCCCC-EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----CCCCEEEEECCC--------CCCCCC
T ss_conf 544697-499831212327567887886540899999999986266678-----888659982588--------855457
Q ss_pred HHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHH-HHHHHHHHHHHHHHHHHCCCEEEECHHH-HHHHHHCCCCCCCCC
Q ss_conf 999999986288577266681586288998999-9999999999999998579899998899-999997089822062
Q gi|254780877|r 734 DKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDM-AKIVRIQLGRVLSLIKERNISMDFDDQV-IDWLSCRGYDPSYGA 809 (853)
Q Consensus 734 ~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~-~~i~~~~l~~l~~~l~~~~i~l~~~~~~-~~~l~~~~~~~~~Ga 809 (853)
.++ .+| +|+|..+...|=...+- .+|+ +.+.++ +.+++.+ +..|+++|-..-.||
T Consensus 826 pAL-------LRP---GRFDKLvyvG~~~d~esk~~vL----~AlTrk-------FkLdedVdL~eiAk~cp~~~TGA 882 (953)
T KOG0736 826 PAL-------LRP---GRFDKLVYVGPNEDAESKLRVL----EALTRK-------FKLDEDVDLVEIAKKCPPNMTGA 882 (953)
T ss_pred HHH-------CCC---CCCCEEEEECCCCCHHHHHHHH----HHHHHH-------CCCCCCCCHHHHHHHCCCCCCHH
T ss_conf 655-------388---7655248855885678899999----998877-------02878767999996389677524
No 164
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=98.64 E-value=2.5e-07 Score=78.56 Aligned_cols=157 Identities=28% Similarity=0.383 Sum_probs=105.6
Q ss_pred HHHHHHHHC---CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEH------H----HHHC--CCCC
Q ss_conf 999999633---67778668952887407779999999873489984445743788731------3----5421--7454
Q gi|254780877|r 187 MRRAIQVLS---RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDM------G----ALIA--GAKF 251 (853)
Q Consensus 187 I~~~~~iL~---r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~------~----~l~a--g~~~ 251 (853)
++++-..|. +-+-.|.+|||++|.|||.|++-++..--...-++ -..+.|+.+.+ . +++. |+.|
T Consensus 46 L~~Le~Ll~~P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~-~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~ 124 (302)
T pfam05621 46 LNRLEALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDAD-QEHIPVLVVQMPSEPSVIRFYVALLAAMGAPL 124 (302)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999998468646887558870798878999999999679987866-67021899976999886899999999837877
Q ss_pred C-----CHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCC
Q ss_conf 2-----02454589999998607997699963627730266655433588887653124660489974489999973001
Q gi|254780877|r 252 R-----GEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKD 326 (853)
Q Consensus 252 r-----g~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD 326 (853)
| .+.+..+..+++.+ +-=+|.|||+|+++ +|+..---..-|.||-.--...|-+||+-|.+-|+- |-.|
T Consensus 125 ~~~~~~~~~~~~~~~ll~~~----~vrmLIIDEiHnlL-~Gs~~~qr~~ln~LK~L~Nel~IpiV~vGt~eA~~a-i~tD 198 (302)
T pfam05621 125 RPRPRLPEMEQLALALLRKV----GVRMLVIDELHNVL-AGNSVNRREFLNLLRFLGNELRIPLVGVGTRDAYLA-IRSD 198 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHC----CCCEEEEECHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH-HHCC
T ss_conf 88877899999999999974----98789985436560-486889999999999986365878699531999999-7068
Q ss_pred HHHHHCCCEEECCCCCHHHHHHHH
Q ss_conf 113202311111577767899999
Q gi|254780877|r 327 PALARRFQSLLVGEPTVTDTISIL 350 (853)
Q Consensus 327 ~Al~RRFq~i~V~Eps~~~t~~iL 350 (853)
+-|.+||+++.+..=..++....|
T Consensus 199 ~QlasRF~~~~Lp~W~~d~ef~~L 222 (302)
T pfam05621 199 DQLENRFEPMLLPPWEANDDCCSL 222 (302)
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 888850586116888898089999
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.9e-06 Score=69.91 Aligned_cols=160 Identities=27% Similarity=0.389 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHH-------------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHH
Q ss_conf 333578999999963-------------3677786689528874077799999998734899844457437887313542
Q gi|254780877|r 180 VIGRDDEMRRAIQVL-------------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALI 246 (853)
Q Consensus 180 VIGRe~EI~~~~~iL-------------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 246 (853)
|=|=++.|+++-++. .=.--..++|-|+||.|||-++...|.. -++..+-+--+.||
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~----------T~AtFIrvvgSElV 222 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ----------TDATFIRVVGSELV 222 (406)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHC----------CCCEEEEECCHHHH
T ss_conf 35889999999998403366888999749999971276689997588999998720----------58669994219999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC-C-CCC---------HHHHHHHHHCCCCEEEEEEEC
Q ss_conf 17454202454589999998607997699963627730266655-4-335---------888876531246604899744
Q gi|254780877|r 247 AGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTD-G-AMD---------ASNLLKPSLARGELHCIGATT 315 (853)
Q Consensus 247 ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~-g-~~D---------aan~LKP~LarG~l~~IgaTT 315 (853)
-||-||=-.-++.+..-++.. .+.|+|||||..|- +.+.+ + |.| .-|=|--.=.+|++++|+||-
T Consensus 223 --qKYiGEGaRlVRelF~lArek-aPsIIFiDEIDAIg-~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 223 --QKYIGEGARLVRELFELAREK-APSIIFIDEIDAIG-AKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred --HHHHCCCHHHHHHHHHHHHHC-CCEEEEEECHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf --998341169999999987414-98499983112231-11136888850999999999998605889788768998558
Q ss_pred HHHHHHHHHCCHHHHH--CCC-EEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999997300111320--231-111157776789999999789865
Q gi|254780877|r 316 LDEYRKYIEKDPALAR--RFQ-SLLVGEPTVTDTISILRGLKERYE 358 (853)
Q Consensus 316 ~~Eyrk~iEkD~Al~R--RFq-~i~V~Eps~~~t~~iL~gl~~~yE 358 (853)
--. -=||||-| ||. +|.+.-|+.+.-.+||+-...++-
T Consensus 299 R~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~ 339 (406)
T COG1222 299 RPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN 339 (406)
T ss_pred CCC-----CCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 855-----55766508875453011689897899999998762146
No 166
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.61 E-value=1.4e-07 Score=80.63 Aligned_cols=160 Identities=30% Similarity=0.527 Sum_probs=108.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHH--------HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 767459489999999999874--------101236566512898726786168899999998723776530022447740
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRF--------RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~--------~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
-+.|=|-++-+..|..++.+- ..|+..| -|++|+ ||+|+|||-|||++|... +--|||+=-|||
T Consensus 121 y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PP---KGvLLy-GPPGtGKTLlAKAvA~et---~ATFIrvVgSEl- 192 (364)
T TIGR01242 121 YEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPP---KGVLLY-GPPGTGKTLLAKAVAHET---NATFIRVVGSEL- 192 (364)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCC---CCEEEE-CCCCCCHHHHHHHHHCCC---CCEEEEEEHHHH-
T ss_conf 402678789999998887346888316776288989---865700-757976889999863145---512688604444-
Q ss_pred CCCCCCHHHCCCCHHCCCCCCCCCCHHHH-----CCCCCEEEEHHHHHC-----------CHHHHHHHHHHHHC--CEEE
Q ss_conf 34532013047711203566774211322-----156410220214414-----------98999999998404--5788
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEGGALTEAVR-----RHPYQVVLFDEIEKA-----------HSDVHNILLQVLDD--GRLT 700 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~gg~Lte~vr-----~~P~sVil~DEiEKa-----------h~~v~~~llqild~--G~lt 700 (853)
|.|.|| ||-.|...|- +-| |+|+.|||+-- ..+|...|+|+|-| |+
T Consensus 193 ----V~KyIG---------EGArLV~~~F~LAkEKaP-sIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGF-- 256 (364)
T TIGR01242 193 ----VRKYIG---------EGARLVREVFELAKEKAP-SIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGF-- 256 (364)
T ss_pred ----HHHHHC---------CHHHHHHHHHHHHHCCCC-CEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC--
T ss_conf ----444413---------316899999998530698-1686101333543211467787315788999999752488--
Q ss_pred CCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 79997783033155954851268764032679999999998628857726668158628899899999999999
Q gi|254780877|r 701 DSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 701 d~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
|..| |.-||..|| ..|=...+ .+|| +|+|.+|-----+.+--..|+..+-
T Consensus 257 d~rg------~VkviaATN--------R~DilDPA-------~LRP---GRFDR~IEVPlP~~~GR~eIlkiHT 306 (364)
T TIGR01242 257 DPRG------NVKVIAATN--------RPDILDPA-------ILRP---GRFDRIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred CCCC------CEEEEEECC--------CCHHCCCC-------CCCC---CCCCCEEECCCCCCCCHHHHHHHHH
T ss_conf 8767------616887207--------62020432-------1488---8613257316978322056655521
No 167
>KOG0731 consensus
Probab=98.61 E-value=2.9e-07 Score=77.97 Aligned_cols=159 Identities=25% Similarity=0.402 Sum_probs=104.4
Q ss_pred CCCCCCHH---HHHHHHHHHH---------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
Q ss_conf 53333357---8999999963---------36777866895288740777999999987348998444574378873135
Q gi|254780877|r 177 LDPVIGRD---DEMRRAIQVL---------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA 244 (853)
Q Consensus 177 LDPVIGRe---~EI~~~~~iL---------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 244 (853)
++-|-|-| +||++++..| .=|--..++|+|+||+|||-++...|- +..|| .++..-+-
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAG---EAgVP-------F~svSGSE 379 (774)
T KOG0731 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAG---EAGVP-------FFSVSGSE 379 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHC---CCCCC-------EEEECHHH
T ss_conf 010267089999999999984398999874776767517878999867899998853---05896-------46413378
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC----CCCCCCCHHHHHHHHH-------CCCCEEEEEE
Q ss_conf 4217454202454589999998607997699963627730266----6554335888876531-------2466048997
Q gi|254780877|r 245 LIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAG----KTDGAMDASNLLKPSL-------ARGELHCIGA 313 (853)
Q Consensus 245 l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG----~~~g~~Daan~LKP~L-------arG~l~~Iga 313 (853)
++..-.-.| ..|++.+....+. +-+.|+|||||..+-+.- ...|.-+..+-|-..| ..+..-++++
T Consensus 380 FvE~~~g~~--asrvr~lf~~ar~-~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~ 456 (774)
T KOG0731 380 FVEMFVGVG--ASRVRDLFPLARK-NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAA 456 (774)
T ss_pred HHHHHCCCC--HHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 888760343--4888999987432-6980797145420031255666678880788899988787527767784799811
Q ss_pred ECHHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHHHHHHHHH
Q ss_conf 448999997300111320--2311-111577767899999997
Q gi|254780877|r 314 TTLDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDTISILRGL 353 (853)
Q Consensus 314 TT~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~gl 353 (853)
|--- =.-|+||-| ||.+ |.|..|+...-..|+.-.
T Consensus 457 tnr~-----d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731 457 TNRP-----DILDPALLRPGRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred CCCC-----CCCCHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
T ss_conf 6886-----6428876498755552324698514168999998
No 168
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.61 E-value=2e-06 Score=71.26 Aligned_cols=87 Identities=30% Similarity=0.432 Sum_probs=57.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHHH----HCCCC
Q ss_conf 778668952887407779999999873489984445743788731354217454202-4545899999986----07997
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE-FEERLKSLLCEIR----SEDGE 272 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-~e~r~~~i~~~~~----~~~~~ 272 (853)
.|+|++|||+.|+|||-|++-||+.+ +||-...++ .++ .-+.|.|+ -|.-+..++.... .+. .
T Consensus 108 ~KsNILliGPTG~GKTlla~tLAk~l---~vPF~iaDA-------T~l-TEaGYVGeDVE~ii~~Llq~Ad~dve~Ae-~ 175 (411)
T PRK05342 108 QKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADA-------TTL-TEAGYVGEDVENILLKLLQAADYDVEKAQ-R 175 (411)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEE-------CEE-CCCCCCCCCHHHHHHHHHHHCCCCHHHHH-C
T ss_conf 34538998999977889999999986---999899861-------200-12674560799999999998288899883-6
Q ss_pred EEEEECCHHHHCCCCC-CCCCCCHH
Q ss_conf 6999636277302666-55433588
Q gi|254780877|r 273 IILFIDELHVLVGAGK-TDGAMDAS 296 (853)
Q Consensus 273 ~ilfide~h~~~gaG~-~~g~~Daa 296 (853)
=|.|||||.-|--.+. .+.+-|++
T Consensus 176 GIV~IDEIDKIarks~~~s~trDVS 200 (411)
T PRK05342 176 GIVYIDEIDKIARKSENPSITRDVS 200 (411)
T ss_pred CEEEEEEHHHHHHCCCCCCCCCCCC
T ss_conf 8288850234542478888877765
No 169
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.61 E-value=1.6e-06 Score=71.99 Aligned_cols=111 Identities=21% Similarity=0.403 Sum_probs=81.4
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCC
Q ss_conf 10220214414989999999984045788799977830331559548512687640326799999999986288577266
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNR 751 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnR 751 (853)
.|++.||+.--.-+-|.+|-+.|++- |. -||||-||-|-..+....... ---.|+.||+|
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse-----------~a-PIii~AtNRG~~kiRGTd~~s--------PhGIP~DlLDR 352 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE-----------LA-PIIILATNRGMTKIRGTDIES--------PHGIPLDLLDR 352 (450)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHCC-----------CC-CEEEEECCCCEEEECCCCCCC--------CCCCCHHHHHH
T ss_conf 42897321345578999999876314-----------67-579997177500121667768--------88898766622
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 681586288998999999999999999999857989999889999999708982206215799999
Q gi|254780877|r 752 LDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817 (853)
Q Consensus 752 id~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~ 817 (853)
+ -||.-+|++.++++.|++... +--.+.++++|+++|++-|-. .+||-.++
T Consensus 353 l-lII~t~py~~~EireIi~iRa---------~ee~i~l~~~Ale~L~~ig~e-----tSLRYa~q 403 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRA---------KEEDIELSDDALEYLTDIGEE-----TSLRYAVQ 403 (450)
T ss_pred E-EEEECCCCCHHHHHHHHHHHH---------HHHCCCCCHHHHHHHHHHCHH-----HHHHHHHH
T ss_conf 5-677447798899999999764---------354030488899999751503-----44899998
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=0.0001 Score=57.27 Aligned_cols=157 Identities=20% Similarity=0.396 Sum_probs=108.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
+.|+||+++++.+.+++...|. | -++||.||.|||||.+|+.+|..+++....--..|+-++.-..
T Consensus 4 ~~iiGq~~i~~~L~~~i~~~rl-------~-HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~------ 69 (313)
T PRK05564 4 RTIIGHENIKNRIDNSIIKGKF-------S-HASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPIN------ 69 (313)
T ss_pred HHCCCHHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC------
T ss_conf 2326829999999999987998-------7-5043279998509999999999982899778898658863322------
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCC----CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 477112035667742113221564----1022021441498999999998404578879997783033155954851268
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPY----QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~----sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
..-+|-|+==.|.+.+..+|+ -|+++|+.|+.+.+-.|.||-.|+|= -.+|+|||+|+--.
T Consensus 70 ---~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP-----------P~~t~fIL~t~~~~- 134 (313)
T PRK05564 70 ---KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCENLE- 134 (313)
T ss_pred ---CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC-----------CCCEEEEEEECCHH-
T ss_conf ---569998999999999840862589569998077775899999984550368-----------99858998649835-
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 76403267999999999862885772666815862889989999999999
Q gi|254780877|r 724 YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQ 773 (853)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~ 773 (853)
...|-.+.|. ..+.|+|++.+++...+...
T Consensus 135 -------------------~lLpTI~SRC-Q~~~f~~l~~~~i~~~L~~~ 164 (313)
T PRK05564 135 -------------------QILDTIKSRC-QIYKLNRLSKEDIEKFISYK 164 (313)
T ss_pred -------------------HCCCHHHCCC-EEEECCCCCHHHHHHHHHHH
T ss_conf -------------------4757787065-35668998999999999986
No 171
>KOG2028 consensus
Probab=98.60 E-value=2.5e-07 Score=78.49 Aligned_cols=225 Identities=20% Similarity=0.324 Sum_probs=129.3
Q ss_pred CCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 20001686678999876617866775100000001235547767459489999999999874101236566512898726
Q gi|254780877|r 526 MVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLG 605 (853)
Q Consensus 526 ~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~G 605 (853)
.........++.+. ..+-|++. +-| -+--..++||++++.. +.+.++. +. .++ +-|+.|-|
T Consensus 109 ~~~~~l~~~e~R~~---~qh~PLae-----rmR-----PktL~dyvGQ~hlv~q--~gllrs~--ie-q~~-ipSmIlWG 169 (554)
T KOG2028 109 PHKRALAAEEIRQM---LQHKPLAE-----RMR-----PKTLDDYVGQSHLVGQ--DGLLRSL--IE-QNR-IPSMILWG 169 (554)
T ss_pred CCCCHHHHHHHHHH---HCCCCHHH-----HCC-----CCHHHHHCCHHHHCCC--CHHHHHH--HH-CCC-CCCEEEEC
T ss_conf 64211204888877---51697455-----418-----4368775053441483--2689999--87-088-87058866
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHH
Q ss_conf 78616889999999872377653002244774034532013047711203566774211322156410220214414989
Q gi|254780877|r 606 PTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSD 685 (853)
Q Consensus 606 ptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~ 685 (853)
|+|+|||.||+.||..--...-.||.+ |-- ...+.-+-+. +++.- .+..--+-..|+++|||..-+..
T Consensus 170 ppG~GKTtlArlia~tsk~~Syrfvel--SAt--~a~t~dvR~i------fe~aq--~~~~l~krkTilFiDEiHRFNks 237 (554)
T KOG2028 170 PPGTGKTTLARLIASTSKKHSYRFVEL--SAT--NAKTNDVRDI------FEQAQ--NEKSLTKRKTILFIDEIHRFNKS 237 (554)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEE--ECC--CCCHHHHHHH------HHHHH--HHHHHHCCEEEEEEHHHHHHHHH
T ss_conf 998765889999986057774279997--414--5661889999------99988--78765244069873776553232
Q ss_pred HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHH
Q ss_conf 99999998404578879997783033155954851268764032679999999998628857726668158628899899
Q gi|254780877|r 686 VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKED 765 (853)
Q Consensus 686 v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~ 765 (853)
-+++||-..++|.+| +|=.|+-- .... ....++.|. .|++.++|..+.
T Consensus 238 QQD~fLP~VE~G~I~------------lIGATTEN-------PSFq------------ln~aLlSRC-~VfvLekL~~n~ 285 (554)
T KOG2028 238 QQDTFLPHVENGDIT------------LIGATTEN-------PSFQ------------LNAALLSRC-RVFVLEKLPVNA 285 (554)
T ss_pred HHHCCCCEECCCCEE------------EEECCCCC-------CCCC------------HHHHHHHCC-CEEEECCCCHHH
T ss_conf 110034213067069------------98536689-------7601------------127787316-066733688899
Q ss_pred HHHHHHHHHHHHHHHHHH----CCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 999999999999999985----798999988999999970898220621579999
Q gi|254780877|r 766 MAKIVRIQLGRVLSLIKE----RNISMDFDDQVIDWLSCRGYDPSYGARPLKRVI 816 (853)
Q Consensus 766 ~~~i~~~~l~~l~~~l~~----~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i 816 (853)
+..|+..-+.-|...-+. -+-.+++++++++|++..+- -.||.--..+
T Consensus 286 v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd---GDaR~aLN~L 337 (554)
T KOG2028 286 VVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD---GDARAALNAL 337 (554)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CHHHHHHHHH
T ss_conf 999999998763210256889998312456889999987047---3188887789
No 172
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.60 E-value=7.7e-06 Score=66.43 Aligned_cols=157 Identities=19% Similarity=0.307 Sum_probs=72.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHH
Q ss_conf 98726786168899999998723776530022447740345320130477112035667742113221564102202144
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIE 680 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiE 680 (853)
+.+.||+|+|||.|..++.............+.+.++.+. .|.+ .+.+ .-+.+|++|.|+
T Consensus 48 l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~---------~~~~---------l~~l--~~~dll~iDDi~ 107 (235)
T PRK08084 48 IYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWF---------VPEV---------LEGM--EQLSLVCIDNIE 107 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH---------HHHH---------HHHH--HHCCEEEEECHH
T ss_conf 9998999988899999999999707985799877986651---------7999---------9876--418989982745
Q ss_pred HCC--H----HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC-
Q ss_conf 149--8----999999998404578879997783033155954851268764032679999999998628857726668-
Q gi|254780877|r 681 KAH--S----DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD- 753 (853)
Q Consensus 681 Kah--~----~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid- 753 (853)
.-. + .+|++|=.+.+.|+ |-|++||+.....+. .+-|.+..|+.
T Consensus 108 ~i~g~~~~ee~lF~l~N~~~~~g~-------------~~ll~ts~~~P~~l~----------------~~l~DL~SRl~~ 158 (235)
T PRK08084 108 CIAGDELWEMAIFDLYNRILESGK-------------TRLLITGDRPPRQLN----------------LGLPDLASRLDW 158 (235)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCC-------------CEEEEECCCCHHHCC----------------CCCHHHHHHHHC
T ss_conf 546997899999999999998489-------------669996798824302----------------312889999956
Q ss_pred -CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf -15862889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r 754 -EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 754 -~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
-++--.|++.++...|+.. +...+|+. +++++.+||+++. +..+ |.|..++.+
T Consensus 159 g~~~~i~~~dde~~~~iL~~-------~a~~rgl~--l~~~V~~yl~~~~-~R~~--~~L~~~l~~ 212 (235)
T PRK08084 159 GQIYKLQPLSDEEKLQALQL-------RARLRGFE--LPEDVGRFLLKRL-DREM--RTLFMTLDQ 212 (235)
T ss_pred CCEEEECCCCHHHHHHHHHH-------HHHHCCCC--CCHHHHHHHHHHC-CCCH--HHHHHHHHH
T ss_conf 97278559998999999999-------99973999--9989999999861-5889--999999999
No 173
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.59 E-value=7.1e-07 Score=74.81 Aligned_cols=181 Identities=21% Similarity=0.264 Sum_probs=111.8
Q ss_pred CCCCHHHHHHHHHHHHC-CCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHC---------------CCEEEEEE
Q ss_conf 33335789999999633-677786-68952887407779999999873489984445---------------74378873
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLS-RRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDIPESLK---------------GKRLMALD 241 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~-r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~vp~~l~---------------~~~i~~ld 241 (853)
.++|-+..+.++..-.. ..+-.+ .++.|+||+|||+.+..||..+...... ... .-.+++++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPT-GLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHCCCCCCCEEEEC
T ss_conf 64332358999999998658887610037999997899999999996586643-34552002244432025688659977
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEEECH
Q ss_conf 1354217454202454589999998607---997699963627730266655433588887653124--66048997448
Q gi|254780877|r 242 MGALIAGAKFRGEFEERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GELHCIGATTL 316 (853)
Q Consensus 242 ~~~l~ag~~~rg~~e~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l~~IgaTT~ 316 (853)
....- ...-..+.++.+.+..... .+.-|.+|||+..+ +.||+|.|-..+.. ...++|-.|.
T Consensus 81 ~s~~~----~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m--------t~~A~nallk~lEep~~~~~~il~~n- 147 (325)
T COG0470 81 PSDLR----KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL--------TEDAANALLKTLEEPPKNTRFILITN- 147 (325)
T ss_pred CCCCC----CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC--------CHHHHHHHHHHCCCCCCCEEEEEEEC-
T ss_conf 32133----330069999999986044656677269997320326--------98888767543324888716999749-
Q ss_pred HHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999973001113202311111577767899999997898654149610158999998633320245767477899
Q gi|254780877|r 317 DEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAID 392 (853)
Q Consensus 317 ~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAID 392 (853)
.+.+-+. -+-.|-+.+.+..|+....+..+. ++++...+..+...+...--|..|..
T Consensus 148 -~~~~il~---tI~SRc~~i~f~~~~~~~~i~~~e---------------~~~l~~i~~~~~gd~r~~i~~lq~~~ 204 (325)
T COG0470 148 -DPSKILP---TIRSRCQRIRFKPPSRLEAIAWLE---------------DQGLEEIAAVAEGDARKAINPLQALA 204 (325)
T ss_pred -CHHHCHH---HHHHHEEEEECCCCCHHHHHHHHH---------------HHHHHHHHHHHCCHHHHHCCHHHHHH
T ss_conf -8555647---877560788767741889999850---------------75799999870406887348999998
No 174
>pfam00493 MCM MCM2/3/5 family.
Probab=98.59 E-value=4.3e-06 Score=68.46 Aligned_cols=218 Identities=18% Similarity=0.271 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC----CC---CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0123554776745948999999999987410123----65---6651289872678616889999999872377653002
Q gi|254780877|r 559 FLRIETEISKSVIGQSAAVESVSNALRRFRAGLQ----DP---QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIR 631 (853)
Q Consensus 559 Ll~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~----~~---~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir 631 (853)
+..|-+.+--.|+|.+..-..+.-.+. .|-. +. +.-+ -.|++|-+|+|||.|.|..++.. .+
T Consensus 15 ~~~l~~siaP~i~G~~~vK~ai~l~l~---gg~~~~~~~~~~~Rg~i-hiLLvGdPG~gKSqlLk~~~~~~---pr---- 83 (327)
T pfam00493 15 YDKLARSIAPSIYGHEDVKKAILLQLF---GGVKKNLPDGTRLRGDI-NVLLVGDPGTAKSQLLKYVAKLA---PR---- 83 (327)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCC-EEEEECCCCCCHHHHHHHHHHHC---CC----
T ss_conf 999999859712498799999999980---89876588886203651-18984699815609999999868---87----
Q ss_pred CCHHHHCCC--CCCCHHHCCCC---HHCCC-CCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCC-C
Q ss_conf 244774034--53201304771---12035-66774211322156410220214414989999999984045788799-9
Q gi|254780877|r 632 IDMSEYMEK--HSVSRLIGSPP---GYVGY-EEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQ-G 704 (853)
Q Consensus 632 ~dMsey~e~--~~vs~LiGapp---GYvG~-~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~-G 704 (853)
|-|... .+..-|.++.- .-=+| =++|.|.- .+ ..|++.||++|+.+.....|++.|+++++|=++ |
T Consensus 84 ---~~~tsg~~ss~~GLTa~~~~d~~~~~~~leaGalvl---Ad-~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKaG 156 (327)
T pfam00493 84 ---AVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGALVL---AD-GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAG 156 (327)
T ss_pred ---CEEECCCCCCCCCCEEEEEEECCCCCEEEECCCEEE---CC-CCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECCC
T ss_conf ---088317766567761589980688836983684775---58-98278500555887679999999986817763385
Q ss_pred CEEECC-CCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCC-HHHHHHHHHHHHH-------
Q ss_conf 778303-3155954851268764032679999999998628857726668158628899-8999999999999-------
Q gi|254780877|r 705 RTVDFR-NTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLR-KEDMAKIVRIQLG------- 775 (853)
Q Consensus 705 ~~v~f~-n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~-~~~~~~i~~~~l~------- 775 (853)
-+..+. .|-||.|.|-- ...++... .+.+ .-.++|.+|.|+|-+++..... .+.=.+|++..+.
T Consensus 157 i~~tL~ar~sVlAaaNP~----~g~yd~~~-~~~~--ni~Lp~~lLsRFDLif~l~D~~~~~~D~~ia~~i~~~~~~~~~ 229 (327)
T pfam00493 157 IVATLNARCSVLAAANPI----FGRYDPKK-SVAE--NINLPPPLLSRFDLIFVLLDKPDEEKDEELAKHIVDLHRHGEE 229 (327)
T ss_pred EEEEECCCCEEEEEECCC----CCCCCCCC-CHHH--HCCCCHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 389725871799852776----77378888-9888--5589767745010798840689868899999999998744688
Q ss_pred ------------HHHHHH--HHCCCEEEECHHHHHHHHHC
Q ss_conf ------------999999--85798999988999999970
Q gi|254780877|r 776 ------------RVLSLI--KERNISMDFDDQVIDWLSCR 801 (853)
Q Consensus 776 ------------~l~~~l--~~~~i~l~~~~~~~~~l~~~ 801 (853)
.+.+.+ ..+.+.-.+++++.++|.+.
T Consensus 230 ~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~ea~~~i~~~ 269 (327)
T pfam00493 230 EEIETEDYVDPELLRKYIAYARENIFPKLSDEAREKLVNY 269 (327)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 6555688799999999999998527887798999999999
No 175
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.59 E-value=1.6e-07 Score=80.17 Aligned_cols=71 Identities=21% Similarity=0.463 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCC
Q ss_conf 0123554776745948999999999987410123656651289872678616889999999872377--653002
Q gi|254780877|r 559 FLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD--ENSMIR 631 (853)
Q Consensus 559 Ll~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~--~~~lir 631 (853)
+..|+..|+.+++||.-|.+.|..+++-.... .+|+||+ ++-|-||||+||+..|+.||+.||.+ .+.+++
T Consensus 16 ~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~-~~p~KpL-VlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh 88 (127)
T pfam06309 16 YHGLERDLARRLFGQHLVKQLVVRSVKGHWEN-PKPRKPL-VLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVH 88 (127)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCCE-EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 79999999875347798999999999999748-9999974-8870189998798999999999875434787568
No 176
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.57 E-value=1.4e-06 Score=72.47 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=34.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 298533333578999999963367778668952887407779999999873
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRII 224 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~ 224 (853)
.+-+|-|||-|+-++-+.-....|+ |++|||+||+||+-+++.+++.+-
T Consensus 27 ~~lidqVIGQe~Av~~i~~Aa~qrr--hvlliG~PGtGKSmlakam~elLp 75 (637)
T PRK13765 27 KLLIDQVIGQEHAVEVIKKAAKQRR--HVMLIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHC--CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8523324571999999999998437--389868999879999999997579
No 177
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.57 E-value=7.3e-05 Score=58.50 Aligned_cols=172 Identities=20% Similarity=0.357 Sum_probs=106.3
Q ss_pred CCCCHHHHHHH-HHHHHCCCC------CCCEEE-ECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH----HH
Q ss_conf 33335789999-999633677------786689-5288740777999999987348998444574378873135----42
Q gi|254780877|r 179 PVIGRDDEMRR-AIQVLSRRT------KNNPVL-IGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA----LI 246 (853)
Q Consensus 179 PVIGRe~EI~~-~~~iL~r~~------k~n~~l-vGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~----l~ 246 (853)
-|+|...++-- ..+-.+..- .-||+. -|.+|+|||.+.++++..+.+ | +++|+.+.... ++
T Consensus 113 FVvG~~N~lA~~aa~~va~~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~---~----~~kV~Yvtae~F~~~~v 185 (455)
T PRK12422 113 FLVTPENDLPFRILQEFAKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRE---S----GGKILYVSSELFTEHLV 185 (455)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC---C----CCEEEEECHHHHHHHHH
T ss_conf 3315860999999999983755358876787588789999789999999998537---9----98699974999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE-CHHHHHHHHHC
Q ss_conf 17454202454589999998607997699963627730266655433588887653124660489974-48999997300
Q gi|254780877|r 247 AGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT-TLDEYRKYIEK 325 (853)
Q Consensus 247 ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT-T~~Eyrk~iEk 325 (853)
...+ .|+ +...-+..... -+|.||+||-+-|-.++ ..-.-+++--....|.-=+|.+- .|.|... +
T Consensus 186 ~ai~-~~~----~~~Fr~~yr~~---DvLLIDDIQfl~gK~~t--qeEff~tfN~L~~~~KQIVitsDr~P~el~~-l-- 252 (455)
T PRK12422 186 SAIR-SGE----MQRFRSFYRNV---DALFIEDIEVFSGKGAT--QEEFFHTFNSLHTEGKLIVISSSYAPGDLKA-M-- 252 (455)
T ss_pred HHHH-CCC----HHHHHHHHHCC---CEEEEEHHHHHHCCHHH--HHHHHHHHHHHHHCCCEEEEECCCCHHHHHH-H--
T ss_conf 9997-588----99999999638---87763147887284889--9999999999998599699968989576512-6--
Q ss_pred CHHHHHCCC---EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 111320231---1111577767899999997898654149610158999998
Q gi|254780877|r 326 DPALARRFQ---SLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAA 374 (853)
Q Consensus 326 D~Al~RRFq---~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av 374 (853)
+.-|..||+ .+.|++|+.++-+.||+.... .+++.++++++++.+
T Consensus 253 ~~RL~SRf~~GL~v~I~~Pd~etr~~Il~~k~~----~~~~~l~~ev~~~iA 300 (455)
T PRK12422 253 EERLISRFEWGIAIPIHPLTREGLRSFLMRQAE----QLSIRIEETALDFLI 300 (455)
T ss_pred HHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHH
T ss_conf 899998863761321689998999999999998----718888446899999
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=9e-07 Score=73.99 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=107.9
Q ss_pred HHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHC-------------CCEEEEEEHHHHHCCCC
Q ss_conf 89999999633677786-68952887407779999999873489984445-------------74378873135421745
Q gi|254780877|r 185 DEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDIPESLK-------------GKRLMALDMGALIAGAK 250 (853)
Q Consensus 185 ~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~vp~~l~-------------~~~i~~ld~~~l~ag~~ 250 (853)
+-.+++...+.+.+=.+ -++.|++|+||++++..+|+.+......+.-. +.++++. ..--.|.+
T Consensus 11 ~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~--~~~~~~~k 88 (319)
T PRK08769 11 RAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSF--IPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEEC--CCCCCCCC
T ss_conf 9999999999769942068758999878999999999998379979765433889996689989687753--44445431
Q ss_pred CCCHH-HHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEEECHHHHHHHHH
Q ss_conf 42024-545899999986079---97699963627730266655433588887653124--6604899744899999730
Q gi|254780877|r 251 FRGEF-EERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GELHCIGATTLDEYRKYIE 324 (853)
Q Consensus 251 ~rg~~-e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l~~IgaTT~~Eyrk~iE 324 (853)
.+.+. =+.++.+++.+...+ +.-|..||+.|++ +..++|-|--.|.. ...-+|=.|+.. .+.
T Consensus 89 ~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~m--------n~~AaNalLK~LEEPp~~~~~iL~~~~~--~~l-- 156 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI--------NRSACNALLKTLEEPSPGRYLWLISAQP--ARL-- 156 (319)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHC--------CHHHHHHHHHHHCCCCCCEEEEEEECCH--HHC--
T ss_conf 1234869999999999613720279569998066752--------8999999999822799884899986993--658--
Q ss_pred CCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0111320231111157776789999999789865414961015899999863332024576747789999999998
Q gi|254780877|r 325 KDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASAR 400 (853)
Q Consensus 325 kD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~ 400 (853)
=+.+-.|-|.|....|+.+++...|.+- | +.+.....++.++ +..|-.|+.++.+....
T Consensus 157 -l~TI~SRCq~~~~~~p~~~~~~~~L~~~--------g--~~~~~a~~~l~~a------~g~p~~A~~~~~~~~~~ 215 (319)
T PRK08769 157 -PATIRSRCQRLEFKLPPAHEALAWLLSQ--------G--VSERAAQEALDAA------RGHPGLAAQWLREDGLA 215 (319)
T ss_pred -CHHHHHCCEEECCCCCCHHHHHHHHHHC--------C--CCHHHHHHHHHHH------CCCHHHHHHHHCCCCHH
T ss_conf -2477648501118996999999999975--------9--9918999999982------79968999984367277
No 179
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.57 E-value=4e-07 Score=76.87 Aligned_cols=101 Identities=24% Similarity=0.399 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC----------CCH
Q ss_conf 7886443569987298533333578999999963367778668952887407779999999873489----------984
Q gi|254780877|r 161 LKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGD----------IPE 230 (853)
Q Consensus 161 L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~----------vp~ 230 (853)
|.+=-..|+..-.+| ++.|+++|+-++--+.-.. +++|+|+||++|++|+..++..+..+. .|+
T Consensus 7 l~eri~~l~~~L~~g----l~ERe~~i~l~lLaalage--hvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFstPe 80 (498)
T PRK13531 7 LAERISRLSSALEKG----LYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFSTPE 80 (498)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
T ss_conf 899999999999701----1446999999999997289--4698889951388999999998557408999987469888
Q ss_pred HHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 445743788731354217454202454589999998607997699963627
Q gi|254780877|r 231 SLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELH 281 (853)
Q Consensus 231 ~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h 281 (853)
.+.|- +|+.+|--. |.++....+- + +.--|.|+|||-
T Consensus 81 ElFGP----~si~~Lk~~----g~y~R~t~G~---L---P~A~iaFLDEIf 117 (498)
T PRK13531 81 EVFGP----LSIQALKDE----GRYERLTSGY---L---PEAEIVFLDEIW 117 (498)
T ss_pred HHCCC----CCHHHHHHC----CEEEEECCCC---C---CCCEEEHHHHHH
T ss_conf 85383----329987117----8489722675---8---866131578786
No 180
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.8e-05 Score=63.37 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=60.5
Q ss_pred HHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE---CCHHHHCCCCCCCCCCCHHHHHHHHHC--
Q ss_conf 444574378873135421745420245458999999860799769996---362773026665543358888765312--
Q gi|254780877|r 230 ESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFI---DELHVLVGAGKTDGAMDASNLLKPSLA-- 304 (853)
Q Consensus 230 ~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfi---de~h~~~gaG~~~g~~Daan~LKP~La-- 304 (853)
+.-.-++||-+|=--|++.. -+.++++-+++.+. -+.|| -|+|-+-- -.|+
T Consensus 127 p~~~~~kv~iidevhmls~~--------afnallktleepp~-~~~fi~att~~~k~p~---------------ti~src 182 (600)
T PRK09111 127 PVSARYKVYIIDEVHMLSTA--------AFNALLKTLEEPPP-HVKFIFATTEIRKVPV---------------TVLSRC 182 (600)
T ss_pred CCCCCEEEEEEECCCCCCHH--------HHHHHHHHHHCCCC-CEEEEEECCCHHHCCH---------------HHHHHH
T ss_conf 87775469996001105799--------99999987625986-5499996285343758---------------998544
Q ss_pred -CCCEEEEEEECHHHHHHHHHCC-------HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -4660489974489999973001-------11320231111157776789999999789865414961015899999863
Q gi|254780877|r 305 -RGELHCIGATTLDEYRKYIEKD-------PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVL 376 (853)
Q Consensus 305 -rG~l~~IgaTT~~Eyrk~iEkD-------~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~l 376 (853)
|=+++-|..-...+|=++|-+. .||. -...-.|-|.-+++.+|--... |.+=.++.+.+....-+
T Consensus 183 ~~f~~~~~~~~~~~~~l~~i~~~e~~~~~~~al~---~ia~~a~GS~RDaLSlLDQai~----~~~~~i~~~~v~~mLGl 255 (600)
T PRK09111 183 QRFDLRRIEAEVLAAHLARIAEKEGVEVEPDALA---LIARAAEGSVRDGLSLLDQAIA----HGAGEVTAEQVRDMLGL 255 (600)
T ss_pred HEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHCCCCCCHHHHHHHHHHH----CCCCCCCHHHHHHHHCC
T ss_conf 1201057999999999999998607686677999---9999748984218999999997----27987569999998688
Q ss_pred HHHHCCCCCCHHHHHHHHHHH
Q ss_conf 332024576747789999999
Q gi|254780877|r 377 SNRYITDRFLPDKAIDLMDEA 397 (853)
Q Consensus 377 s~rYi~~r~lPDKAIDllDeA 397 (853)
++| +.-+||++..
T Consensus 256 ~d~--------~~i~~Ll~~i 268 (600)
T PRK09111 256 ADR--------ARVIDLFEAL 268 (600)
T ss_pred CCH--------HHHHHHHHHH
T ss_conf 767--------7899999999
No 181
>PRK08116 hypothetical protein; Validated
Probab=98.55 E-value=4.2e-07 Score=76.69 Aligned_cols=149 Identities=20% Similarity=0.314 Sum_probs=87.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
.++|.||+|+|||.||-++|..|-......+-++.+++.+.-..+. +.+ +.-++ ..+.+.+.. ..|+.+|++
T Consensus 110 GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~--~~~-~~~~~---~e~l~~l~~--~dLLIiDDl 181 (262)
T PRK08116 110 GLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTY--NSE-GKEDE---NEIIRALDN--ADLLILDDL 181 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH--HCC-CCHHH---HHHHHHHHC--CCEEEEEHH
T ss_conf 1899898999899999999999998799399988999999999998--635-61019---999998612--998998322
Q ss_pred H--HCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEE
Q ss_conf 4--14989999999984045788799977830331559548512687640326799999999986288577266681586
Q gi|254780877|r 680 E--KAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIIL 757 (853)
Q Consensus 680 E--Kah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~ 757 (853)
= +..+-+.+.|++|+|.=. . .+--+|.|||+.-+.+.+ .|.+-.+.||-+-..
T Consensus 182 G~e~~t~w~~e~lf~IIn~Ry-~---------~~kptIiTTNl~~~eL~~---------------~~~~Ri~sRl~e~~~ 236 (262)
T PRK08116 182 GAEKDTEWVREKLYNIIDSRY-R---------KGLPTIFTTNLSLEELKN---------------QYGKRTYSRILEMCT 236 (262)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHHHH---------------HHHHHHHHHHHHCCE
T ss_conf 145698789999999999999-7---------699989987999999999---------------863799999986778
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHHHH
Q ss_conf 288998999-999999999999999
Q gi|254780877|r 758 FEKLRKEDM-AKIVRIQLGRVLSLI 781 (853)
Q Consensus 758 F~~l~~~~~-~~i~~~~l~~l~~~l 781 (853)
.-.++.++. ..++...++.+.++|
T Consensus 237 ~v~~~G~d~R~~~a~~k~~~~~~~l 261 (262)
T PRK08116 237 PVKNEGKSYRREIAKEKLERLKELL 261 (262)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 9985177887999999999999860
No 182
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.55 E-value=1.3e-05 Score=64.64 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=123.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH-CCCCHHCCCC-CCCCCC---HHHHCCC
Q ss_conf 6512898726786168899999998723776530022447740345320130-4771120356-677421---1322156
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI-GSPPGYVGYE-EGGALT---EAVRRHP 670 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li-GappGYvG~~-~gg~Lt---e~vr~~P 670 (853)
|| ...+.||+|||||.+||.||..|-|.. .--|+.|-.|....|-.-.+ |=-|.=.||. ..|.+. ++-+++|
T Consensus 194 Kk--nvIL~G~pGtGKT~lAk~lA~~l~g~~-~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 194 KK--NIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQP 270 (459)
T ss_pred CC--CEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCC
T ss_conf 88--279658999887899999999970788-778468998358866178764605688861326836999999998498
Q ss_pred C--CEEEEHHHHHCCHH-HHHHHHHHHHC-CE-----EE--CCC--CCEE-ECCCCEEEECCCHHHHHHHCCHHHHHHHH
Q ss_conf 4--10220214414989-99999998404-57-----88--799--9778-30331559548512687640326799999
Q gi|254780877|r 671 Y--QVVLFDEIEKAHSD-VHNILLQVLDD-GR-----LT--DSQ--GRTV-DFRNTLIIMTSNLGAEYLIEDGDSVHDKV 736 (853)
Q Consensus 671 ~--sVil~DEiEKah~~-v~~~llqild~-G~-----lt--d~~--G~~v-~f~n~iii~TsN~G~~~~~~~~~~~~~~~ 736 (853)
. .|+++|||..++.. +|.=||.+++. .| ++ =+. |... =-.|..||-|-|.. +..-..+
T Consensus 271 ~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNta--------drs~~~~ 342 (459)
T PRK11331 271 EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA--------DRSLAVV 342 (459)
T ss_pred CCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCC--------CHHHHHH
T ss_conf 98769998432033889999999999641256765225630036888533468865999850334--------1068878
Q ss_pred HHHHHHHCC-----HHHHCCCCCEEECC------CCCHHHHHHHHHHHHHHHHHHHHHC----CCEEEECHHHHHHHHHC
Q ss_conf 999986288-----57726668158628------8998999999999999999999857----98999988999999970
Q gi|254780877|r 737 MGIVRSAFK-----PEFLNRLDEIILFE------KLRKEDMAKIVRIQLGRVLSLIKER----NISMDFDDQVIDWLSCR 801 (853)
Q Consensus 737 ~~~l~~~f~-----peflnRid~iv~F~------~l~~~~~~~i~~~~l~~l~~~l~~~----~i~l~~~~~~~~~l~~~ 801 (853)
--+|+..|. |+| ++.-|. ......... +...+..+++++... +-...+--+ |++..
T Consensus 343 d~alrRrf~f~~~~pd~-----d~~~~~~~l~~~~~~~~~~~~-l~~~l~~LN~rI~~de~lLgrd~~IGHS---YF~~~ 413 (459)
T PRK11331 343 DYALRRRFSFIDIEPGF-----DTPQFRNFLLNKKAEPSFVES-LCQKMNELNQEISKEATILGKGFRIGHS---YFCCG 413 (459)
T ss_pred HHHHHHHHCCEECCCCC-----CHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCEECHH---HHCCC
T ss_conf 99998650212158986-----605554333203433147999-9999999999986321137998772103---20666
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8-9822062157999998733499999970
Q gi|254780877|r 802 G-YDPSYGARPLKRVIQRYIQNPLAERVLS 830 (853)
Q Consensus 802 ~-~~~~~GaR~l~r~i~~~i~~~la~~il~ 830 (853)
. -...-...-++++++.+|.+.|-++.-.
T Consensus 414 ~~~~~~~~~~~L~~I~~~eIiPLLqEYfFD 443 (459)
T PRK11331 414 LEDGTSPDTQWLREIVMTDIAPLLEEYFFD 443 (459)
T ss_pred CCCCCCHHHHHHHHHHHHCHHHHHHHHCCC
T ss_conf 555664368999999985327877887059
No 183
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.55 E-value=2.3e-06 Score=70.73 Aligned_cols=169 Identities=27% Similarity=0.432 Sum_probs=119.9
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCC----------CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEE
Q ss_conf 69987298533333578999999963367----------77866895288740777999999987348998444574378
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRR----------TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLM 238 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~----------~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~ 238 (853)
++.-.+-.+|-|||.++- .+-..++.+- .-.|++.-|+||.|||-.+..||. +.+|| ++
T Consensus 112 ~e~~~~it~ddViGqEeA-K~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan---e~kvp-------~l 180 (368)
T COG1223 112 REIISDITLDDVIGQEEA-KRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN---EAKVP-------LL 180 (368)
T ss_pred HHHHCCCCHHHHHCHHHH-HHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHC---CCCCC-------EE
T ss_conf 566136617664163988-88879999996496876345754168778999648799998725---45785-------48
Q ss_pred EEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHH-CCCCCCCCCCCHHHHHHHHH-------CCCCEEE
Q ss_conf 873135421745420245458999999860799769996362773-02666554335888876531-------2466048
Q gi|254780877|r 239 ALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVL-VGAGKTDGAMDASNLLKPSL-------ARGELHC 310 (853)
Q Consensus 239 ~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~-~gaG~~~g~~Daan~LKP~L-------arG~l~~ 310 (853)
.+....|+. .|.|+-..|+..+.+-+.+.. ++|.||||+..| +.-+-++=-.|++.+.-..| .+-.+-+
T Consensus 181 ~vkat~liG--ehVGdgar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 181 LVKATELIG--EHVGDGARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred EECHHHHHH--HHHHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 711688888--774359899999999887519-84998400245553045788645499999999985017445775699
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCC-EEECCCCCHHHHHHHHHHHHHH
Q ss_conf 997448999997300111320231-1111577767899999997898
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQ-SLLVGEPTVTDTISILRGLKER 356 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq-~i~V~Eps~~~t~~iL~gl~~~ 356 (853)
|+||..-+- =|+|.-.||+ -|.-.=|+.++-+.||+.-...
T Consensus 258 IaaTN~p~~-----LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 258 IAATNRPEL-----LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred EEECCCHHH-----CCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH
T ss_conf 950598465-----078888655650656488858999999998985
No 184
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.1e-06 Score=69.64 Aligned_cols=261 Identities=19% Similarity=0.271 Sum_probs=135.8
Q ss_pred HCCCHHHHHHHHHHHHCC---CHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 016866789998766178---66775100000001235547767459489999999999874101236566512898726
Q gi|254780877|r 529 EVVTSDNIANIVSRWTGI---PVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLG 605 (853)
Q Consensus 529 ~~V~~~dVa~vvS~~TGI---Pv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~G 605 (853)
++....+..+|+....|- |.......... .+..-.+ +-|+||++|-+++.-+ -+|-. .+||.|
T Consensus 140 ~v~~~~~l~ev~~~l~g~~~l~~~~~~~~~~~--~~~~~D~-~DV~GQ~~AKrAleiA----AAGgH-------nLl~~G 205 (490)
T COG0606 140 PVYGARYLEEVVNFLEGKLRLPIPIPSEVIES--FSLAPDF-KDVKGQEQAKRALEIA----AAGGH-------NLLLVG 205 (490)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCH-HHHCCCHHHHHHHHHH----HHCCC-------CEEEEC
T ss_conf 72533029999998648867787786421134--4457666-6643849999999999----84388-------678756
Q ss_pred CCCHHHHHHHHHHHHHHCCC------CCCCCCC-C-----------HHHHCCC-CCC--CHHHCCCCHHCCCCCCCCCCH
Q ss_conf 78616889999999872377------6530022-4-----------4774034-532--013047711203566774211
Q gi|254780877|r 606 PTGVGKTELVKSLARLLFDD------ENSMIRI-D-----------MSEYMEK-HSV--SRLIGSPPGYVGYEEGGALTE 664 (853)
Q Consensus 606 ptGvGKTelak~la~~lf~~------~~~lir~-d-----------Msey~e~-~~v--s~LiGappGYvG~~~gg~Lte 664 (853)
|+|+|||.+|+.+...|=-- |-+.|.. + ---|.-+ |++ ..|+| || |.-+ +.
T Consensus 206 pPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~~~~~~rPFr~PHHsaS~~aLvG---GG-~~p~----PG 277 (490)
T COG0606 206 PPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVG---GG-GVPR----PG 277 (490)
T ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCHHHHHHC---CC-CCCC----CC
T ss_conf 9988656764231025999870888999888763543246786411078768874022889737---89-9889----87
Q ss_pred HHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECC--CCCEEECCCCEEEECCCHHHHHHHCC-------HHHHHHH
Q ss_conf 32215641022021441498999999998404578879--99778303315595485126876403-------2679999
Q gi|254780877|r 665 AVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDS--QGRTVDFRNTLIIMTSNLGAEYLIED-------GDSVHDK 735 (853)
Q Consensus 665 ~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~--~G~~v~f~n~iii~TsN~G~~~~~~~-------~~~~~~~ 735 (853)
.|-.--+.|++|||+--=..+|++.|-|=|++|.++=+ .++.....+-+.+...|.---..... .......
T Consensus 278 eIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~ 357 (490)
T COG0606 278 EISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKR 357 (490)
T ss_pred CEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 35430387788614421059999997374125817999758716872126775223999764788877775788788778
Q ss_pred HHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHH----------HHHHHHHHH-HHHHHHCC--CEEEECHHHHHHHHHCC
Q ss_conf 999998628857726668158628899899999----------999999999-99998579--89999889999999708
Q gi|254780877|r 736 VMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAK----------IVRIQLGRV-LSLIKERN--ISMDFDDQVIDWLSCRG 802 (853)
Q Consensus 736 ~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~----------i~~~~l~~l-~~~l~~~~--i~l~~~~~~~~~l~~~~ 802 (853)
..+.+ +--|+.|||..|.-..++..++.+ +-.....-- .+..+..+ ++-.++...++..+.
T Consensus 358 Y~~kl----Sgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~-- 431 (490)
T COG0606 358 YLNKL----SGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCA-- 431 (490)
T ss_pred HHHHH----HHHHHHHHHHEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHCC--
T ss_conf 89874----378775524110046789787614789898758899999999999999853568542128999997626--
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9822062157999998
Q gi|254780877|r 803 YDPSYGARPLKRVIQR 818 (853)
Q Consensus 803 ~~~~~GaR~l~r~i~~ 818 (853)
=...++.-++..+++
T Consensus 432 -L~~~~~~~L~~al~~ 446 (490)
T COG0606 432 -LQREDADLLKAALER 446 (490)
T ss_pred -CCHHHHHHHHHHHHH
T ss_conf -577679999999996
No 185
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.53 E-value=5.2e-06 Score=67.83 Aligned_cols=174 Identities=21% Similarity=0.391 Sum_probs=96.0
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC--C
Q ss_conf 56651289872678616889999999872377--6530022447740345320130477112035667742113221--5
Q gi|254780877|r 594 PQRPMGSFMFLGPTGVGKTELVKSLARLLFDD--ENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR--H 669 (853)
Q Consensus 594 ~~~p~~~flf~GptGvGKTelak~la~~lf~~--~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~--~ 669 (853)
|..|...+++.||+|+|||.|..+++...... ....+-+++++|... .+..+-. ++ .+..+. .
T Consensus 30 ~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~-~~~~l~~----------~~--~~~f~~~l~ 96 (219)
T pfam00308 30 PGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLND-FVDALRD----------NK--IEAFKKSYR 96 (219)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHH-HHHHHHC----------CC--HHHHHHHHH
T ss_conf 5876782699889999888999999999998499982888439999998-8999981----------88--889999976
Q ss_pred CCCEEEEHHHHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHH
Q ss_conf 6410220214414--98999999998404578879997783033155954851268764032679999999998628857
Q gi|254780877|r 670 PYQVVLFDEIEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPE 747 (853)
Q Consensus 670 P~sVil~DEiEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pe 747 (853)
-..++++|+|+.- .+.....|+.+++.= .++ +.-+++||+.....+ ..+.|.
T Consensus 97 ~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~--~~~--------~~~lllts~~~p~~l----------------~~~~~d 150 (219)
T pfam00308 97 NVDLLLIDDIQFLAGKEKTQEEFFHTFNAL--HEN--------NKQIVLTSDRPPKEL----------------EGFEDR 150 (219)
T ss_pred HCCHHHHCCHHHHCCCHHHHHHHHHHHHHH--HHC--------CCEEEEECCCCCCCC----------------CCCCHH
T ss_conf 323365223676568647899999999999--972--------986999779981002----------------453277
Q ss_pred HHCCC--CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 72666--815862889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r 748 FLNRL--DEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 748 flnRi--d~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
+..|+ .-++.-.+++.++...|+... ...+|+. +++++.+||+.+. +.. .|.|-..+.+
T Consensus 151 L~SRL~~g~~~~i~~pdd~~~~~iL~~~-------a~~r~l~--l~~~v~~yl~~r~-~R~--~r~L~~~L~~ 211 (219)
T pfam00308 151 LRSRFEWGLIIAIEPPDLETRLAILRKK-------AEEENIN--IPNEVLNFIAQRI-TDN--VRELEGALNR 211 (219)
T ss_pred HHHHHHCCEEEECCCCCHHHHHHHHHHH-------HHHCCCC--CCHHHHHHHHHHC-CCC--HHHHHHHHHH
T ss_conf 9999868756611699999999999999-------9984999--9999999999842-798--9999999999
No 186
>PRK12377 putative replication protein; Provisional
Probab=98.53 E-value=4.6e-07 Score=76.36 Aligned_cols=105 Identities=26% Similarity=0.413 Sum_probs=69.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC--CCCCEEE
Q ss_conf 12898726786168899999998723776530022447740345320130477112035667742113221--5641022
Q gi|254780877|r 598 MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR--HPYQVVL 675 (853)
Q Consensus 598 ~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~--~P~sVil 675 (853)
.++++|+||||||||.||.+|+..+.......+-+.+++. +.+|-.+ |++| .+-+.+.+ .-+.++.
T Consensus 101 ~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dL-----v~~L~~a------~~~g-~~~~k~l~~l~~~dLLI 168 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV-----MSRLHES------YDNG-QSGEKFLQELCKVDLLV 168 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH-----HHHHHHH------HHCC-CCHHHHHHHHHCCCEEE
T ss_conf 8608998999987889999999999987996999889999-----9999999------9848-50999999973389898
Q ss_pred EHHHH--HCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHH
Q ss_conf 02144--14989999999984045788799977830331559548512687
Q gi|254780877|r 676 FDEIE--KAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEY 724 (853)
Q Consensus 676 ~DEiE--Kah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~ 724 (853)
+||+= ...+.--.+|.|+++.-.- +..=+|+|||+....
T Consensus 169 IDElG~~~~s~~~~~llfqlI~~Ry~----------~~ks~IiTTNL~f~e 209 (248)
T PRK12377 169 LDEIGIQRETKNEQVVLNQIIDRRTA----------SMRSVGMLTNLNHEA 209 (248)
T ss_pred EHHCCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHH
T ss_conf 60005788986799999999999985----------579868975899779
No 187
>PRK05642 DNA replication initiation factor; Validated
Probab=98.53 E-value=1.2e-05 Score=64.89 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHCCCC---CCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHH
Q ss_conf 3335789999999633677---7866-89528874077799999998734899844457437887313542174542024
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRT---KNNP-VLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEF 255 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~---k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~ 255 (853)
++|...+.-..+.-++... .+|| .|.|++|.|||.+.++.+....+. +++++.+++..+.
T Consensus 22 i~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~-------~~~~~yl~~~~~~--------- 85 (234)
T PRK05642 22 YPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELL--------- 85 (234)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-------CCCEEEEEHHHHH---------
T ss_conf 718759999999998760678778838998899998899999999999807-------9967997899987---------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE-CHHHHHHHHHCCHHHHHCCC
Q ss_conf 54589999998607997699963627730266655433588887653124660489974-48999997300111320231
Q gi|254780877|r 256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT-TLDEYRKYIEKDPALARRFQ 334 (853)
Q Consensus 256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT-T~~Eyrk~iEkD~Al~RRFq 334 (853)
+..-.+++.+...+ .+.||++|.+.|-...+-. .-+++--....|.=-++.++ .|.+.. ...+ -|..||+
T Consensus 86 -~~~~~~~~~l~~~d---~l~IDDi~~i~g~~~~e~~--lF~l~N~~~~~~~~llits~~~P~~l~-~~l~--DL~SRl~ 156 (234)
T PRK05642 86 -DRGPELLDNLEQYE---LVCIDDLDVIAGKADWEEA--LFHLFNRLRDSGRRLLLAASKSPRELP-VKLP--DLKSRLT 156 (234)
T ss_pred -HHHHHHHHHHHHCC---EEEEECHHHHCCCHHHHHH--HHHHHHHHHHCCCEEEEECCCCHHHHC-CCHH--HHHHHHH
T ss_conf -54499986242279---8989364554688599999--999999999839959995787955523-0016--7999995
Q ss_pred ---EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ---111157776789999999789865414961015899999863332024576747789999999
Q gi|254780877|r 335 ---SLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEA 397 (853)
Q Consensus 335 ---~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA 397 (853)
.+.+++|+.++-+.+|+... ...|+.++++++.+.++-..|=+.. =..+++-||.+
T Consensus 157 ~~~~~~i~~l~d~~~~~iL~~~a----~~rgi~l~~~v~~yl~~r~~R~~~~---L~~~l~~Ld~~ 215 (234)
T PRK05642 157 LALVFQMRGLSDEDKLRALQLRA----SRRGLHLTDEVGHFILTRGTRSMSA---LFDLLERLDQA 215 (234)
T ss_pred CCCEEEECCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHH
T ss_conf 78127514899899999999997----7546899989999999973588999---99999999999
No 188
>KOG0735 consensus
Probab=98.52 E-value=2.5e-06 Score=70.38 Aligned_cols=157 Identities=24% Similarity=0.383 Sum_probs=88.8
Q ss_pred HCCHHHHHHHHHHHHHH--------HHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 45948999999999987--------4101236566512898726786168899999998723776530022447740345
Q gi|254780877|r 570 VIGQSAAVESVSNALRR--------FRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~--------~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~ 641 (853)
|-|-.++.+.+-+.|.. ...+|. -+-|. |+.||+|.|||.||-++|..- .-++|..-..|.
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr---~~~gi-LLyGppGcGKT~la~a~a~~~---~~~fisvKGPEl---- 737 (952)
T KOG0735 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLR---LRTGI-LLYGPPGCGKTLLASAIASNS---NLRFISVKGPEL---- 737 (952)
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHCCCC---CCCCE-EEECCCCCCHHHHHHHHHHHC---CEEEEEECCHHH----
T ss_conf 3358999999999985541036788608866---65545-887799985788888888537---805998258899----
Q ss_pred CCCHHHCCCCHHCCCCCC-CCCCHHHH-CCCCCEEEEHHHHHCCH-----------HHHHHHHHHHHCCEEECCCCCEEE
Q ss_conf 320130477112035667-74211322-15641022021441498-----------999999998404578879997783
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEG-GALTEAVR-RHPYQVVLFDEIEKAHS-----------DVHNILLQVLDDGRLTDSQGRTVD 708 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~g-g~Lte~vr-~~P~sVil~DEiEKah~-----------~v~~~llqild~G~ltd~~G~~v~ 708 (853)
.++-||+. +|+ --|-++-+ .+| ||++|||++--.| .|.|-||.-||-..-
T Consensus 738 -L~KyIGaS------Eq~vR~lF~rA~~a~P-CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg--------- 800 (952)
T KOG0735 738 -LSKYIGAS------EQNVRDLFERAQSAKP-CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG--------- 800 (952)
T ss_pred -HHHHHCCC------HHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC---------
T ss_conf -99874500------7889999998651497-489712102437666877777429999999876036334---------
Q ss_pred CCC-CEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 033-15595485126876403267999999999862885772666815862889989999999999
Q gi|254780877|r 709 FRN-TLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQ 773 (853)
Q Consensus 709 f~n-~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~ 773 (853)
+.. .|+-.||.- +-+..+ .+|| +|+|..|.-.+-++.+...|+...
T Consensus 801 l~GV~i~aaTsRp---------dliDpA-------LLRp---GRlD~~v~C~~P~~~eRl~il~~l 847 (952)
T KOG0735 801 LDGVYILAATSRP---------DLIDPA-------LLRP---GRLDKLVYCPLPDEPERLEILQVL 847 (952)
T ss_pred CCEEEEEEECCCC---------CCCCHH-------HCCC---CCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 4538999733783---------436776-------6288---765401567998928999999998
No 189
>PRK08903 hypothetical protein; Validated
Probab=98.51 E-value=2.6e-06 Score=70.28 Aligned_cols=153 Identities=16% Similarity=0.290 Sum_probs=93.7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHH
Q ss_conf 98726786168899999998723776530022447740345320130477112035667742113221564102202144
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIE 680 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiE 680 (853)
+.+.||+|+|||.|..+++..........+.+++.++.+ .+.+ + .-..++++|.|+
T Consensus 45 l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~-----~~~~-------~------------~~~d~l~iDDi~ 100 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLL-----AFDF-------D------------PRAELYAVDDVE 100 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH-----HHHH-------H------------HCCCEEEEECCC
T ss_conf 999899999888999999999980699749965110457-----7742-------0------------018989996411
Q ss_pred HCCHH----HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC--C
Q ss_conf 14989----99999998404578879997783033155954851268764032679999999998628857726668--1
Q gi|254780877|r 681 KAHSD----VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD--E 754 (853)
Q Consensus 681 Kah~~----v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid--~ 754 (853)
.-... +|+++=.+.+.|. +++++||+..... + .+.|.+..|+- -
T Consensus 101 ~i~~~~q~~lF~l~N~~~~~~~-------------~~ll~s~~~~p~~---------------l--~~~~DL~SRl~~gl 150 (227)
T PRK08903 101 RLDDAQQIALFNLFNRVRAHGK-------------TALLVAGPAAPLA---------------L--DVREDLRTRLGWGL 150 (227)
T ss_pred CCCCHHHHHHHHHHHHHHHCCC-------------CEEEECCCCCHHH---------------C--CCCHHHHHHHHCCC
T ss_conf 4895699999999999997299-------------4899718997120---------------1--20089999993897
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 58628899899999999999999999985798999988999999970898220621579999987
Q gi|254780877|r 755 IILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 755 iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~ 819 (853)
++...|++.+.+..|+.. +...+|+ .+++++++||+.+ ++..+ |.|..++.+.
T Consensus 151 ~~~i~~pdde~~~~iL~~-------~a~~rgl--~l~~~v~~yl~~r-~~R~~--~~L~~~l~~L 203 (227)
T PRK08903 151 VYEVKPLSDEDKIAALKA-------AAAERGL--QLADEVPDYLLTH-FRRDM--PSLMALLDAL 203 (227)
T ss_pred EEEEECCCHHHHHHHHHH-------HHHHCCC--CCCHHHHHHHHHH-HCCCH--HHHHHHHHHH
T ss_conf 389979799999999999-------9996299--9988999999998-34789--9999999999
No 190
>KOG0731 consensus
Probab=98.50 E-value=8.9e-06 Score=65.90 Aligned_cols=170 Identities=25% Similarity=0.393 Sum_probs=103.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHH-------HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 767459489999999999874-------1012365665128987267861688999999987237765300224477403
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRF-------RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME 639 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~-------~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e 639 (853)
-+-|.|.++|.+.+-.-+.-. +.|.+- |-|+ |++||+|+|||-|||++|-.= .-.++...-|||.|
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi---PkGv-LL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFvE 382 (774)
T KOG0731 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI---PKGV-LLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCC---CCCE-EEECCCCCCHHHHHHHHHCCC---CCCEEEECHHHHHH
T ss_conf 0102670899999999999843989998747767---6751-787899986789999885305---89646413378888
Q ss_pred CCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHC------------CHHHHHHHHHHHH--CCEEECCCCC
Q ss_conf 4532013047711203566774211322156410220214414------------9899999999840--4578879997
Q gi|254780877|r 640 KHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKA------------HSDVHNILLQVLD--DGRLTDSQGR 705 (853)
Q Consensus 640 ~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKa------------h~~v~~~llqild--~G~ltd~~G~ 705 (853)
.+.|--+--| --|...-|.+--|+|..|||+-- +.+-=+.|-|+|- ||..+
T Consensus 383 -----~~~g~~asrv-----r~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~----- 447 (774)
T KOG0731 383 -----MFVGVGASRV-----RDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET----- 447 (774)
T ss_pred -----HHCCCCHHHH-----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-----
T ss_conf -----7603434888-----9999874326980797145420031255666678880788899988787527767-----
Q ss_pred EEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78303315595485126876403267999999999862885772666815862889989999999999999999
Q gi|254780877|r 706 TVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLS 779 (853)
Q Consensus 706 ~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~ 779 (853)
+ ++.|++.++|- .+... .+ ..+| +|+|..|.-..-+...-..|...++..++-
T Consensus 448 --~-~~vi~~a~tnr--------~d~ld----~a---llrp---GRfdr~i~i~~p~~~~r~~i~~~h~~~~~~ 500 (774)
T KOG0731 448 --S-KGVIVLAATNR--------PDILD----PA---LLRP---GRFDRQIQIDLPDVKGRASILKVHLRKKKL 500 (774)
T ss_pred --C-CCEEEEECCCC--------CCCCC----HH---HCCC---CCCCCCEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf --7-84799811688--------66428----87---6498---755552324698514168999998621577
No 191
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.50 E-value=1.4e-06 Score=72.37 Aligned_cols=198 Identities=18% Similarity=0.253 Sum_probs=117.1
Q ss_pred CCCH-HHHHHHHHHHHCCC-CC--CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHH
Q ss_conf 3335-78999999963367-77--86689528874077799999998734899844457437887313542174542024
Q gi|254780877|r 180 VIGR-DDEMRRAIQVLSRR-TK--NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEF 255 (853)
Q Consensus 180 VIGR-e~EI~~~~~iL~r~-~k--~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~ 255 (853)
++|- ....-...+-+++. .. |...|.|++|+|||.+.++++..+.++. .+.++..++...+..- -..+=.
T Consensus 11 ~vg~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~-----~~~~v~yl~~~~~~~~-~~~~l~ 84 (219)
T pfam00308 11 VIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNF-----PNLRVVYLTSEEFLND-FVDALR 84 (219)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEEHHHHHHH-HHHHHH
T ss_conf 2368389999999999967587678269988999988899999999999849-----9982888439999998-899998
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE-CHHHHHHHHHCCHHHHHCC-
Q ss_conf 54589999998607997699963627730266655433588887653124660489974-4899999730011132023-
Q gi|254780877|r 256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT-TLDEYRKYIEKDPALARRF- 333 (853)
Q Consensus 256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT-T~~Eyrk~iEkD~Al~RRF- 333 (853)
++.+....+.+...+ +|+||++|.+.|....+- -.-+++.-...+|.--+|.+. .|.+. ..+.+| |..||
T Consensus 85 ~~~~~~f~~~l~~~d---~l~iDDi~~l~~~~~~ee--~lf~l~N~~~~~~~~lllts~~~p~~l-~~~~~d--L~SRL~ 156 (219)
T pfam00308 85 DNKIEAFKKSYRNVD---LLLIDDIQFLAGKEKTQE--EFFHTFNALHENNKQIVLTSDRPPKEL-EGFEDR--LRSRFE 156 (219)
T ss_pred CCCHHHHHHHHHHCC---HHHHCCHHHHCCCHHHHH--HHHHHHHHHHHCCCEEEEECCCCCCCC-CCCCHH--HHHHHH
T ss_conf 188889999976323---365223676568647899--999999999972986999779981002-453277--999986
Q ss_pred --CEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --11111577767899999997898654149610158999998633320245767477899999999987
Q gi|254780877|r 334 --QSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARV 401 (853)
Q Consensus 334 --q~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~ 401 (853)
-.+.+++|+.++-..||+... ...++.++++++.+.++-..|= +-.=+.+||.-+++.
T Consensus 157 ~g~~~~i~~pdd~~~~~iL~~~a----~~r~l~l~~~v~~yl~~r~~R~------~r~L~~~L~~L~~~~ 216 (219)
T pfam00308 157 WGLIIAIEPPDLETRLAILRKKA----EEENINIPNEVLNFIAQRITDN------VRELEGALNRLLAFA 216 (219)
T ss_pred CCEEEECCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHHHH
T ss_conf 87566116999999999999999----9849999999999999842798------999999999999855
No 192
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=3.9e-06 Score=68.82 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=78.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCH-HHCC--CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---C-CEE
Q ss_conf 68952887407779999999873489984-4457--437887313542174542024545899999986079---9-769
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIINGDIPE-SLKG--KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---G-EII 274 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~~~vp~-~l~~--~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~-~~i 274 (853)
-++.|++|+|||+.+.-+|+.+...+... ...+ .-+..+|....-+. + ++....++++...+ | .-|
T Consensus 23 YLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~-~------~~i~~~i~~~~~~~~~~~~~Kv 95 (303)
T PRK07132 23 FLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLS-K------EEFLSAIEKFSFSSFVSNQKKI 95 (303)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHH-H------HHHHHHHHHHHHCCCCCCCEEE
T ss_conf 88678998679999999999972998788875456532304133222001-6------8899999999736655687069
Q ss_pred EEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHH
Q ss_conf 99636277302666554335888876531246604899744899999730011132023111115777678999999
Q gi|254780877|r 275 LFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILR 351 (853)
Q Consensus 275 lfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~ 351 (853)
..|||+|++ +..|+|-|--.|..-.-.++.--...+..+.. +..-.|-|.+....++.++-...|.
T Consensus 96 ~IIdea~~l--------t~~A~NaLLKtLEEPp~~~~fil~t~~~~~il---~TI~SRCq~~~f~~~~~~~i~~~l~ 161 (303)
T PRK07132 96 LIIKNIEKT--------SNSSLNALLKTIEEPSKNTYFLLTTKNINKVI---PTIVSRCQVINVKEPDQQKILAKLL 161 (303)
T ss_pred EEEECHHHC--------CHHHHHHHHHHCCCCCCCEEEEEEECCHHHCC---HHHHHCCEEEECCCCCHHHHHHHHH
T ss_conf 998165533--------99999999987038986848999728824383---7786366566378899999999998
No 193
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.48 E-value=4.4e-05 Score=60.27 Aligned_cols=189 Identities=15% Similarity=0.155 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf 3335789999999633677786-689528874077799999998734899844457437887313542174542024545
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEER 258 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r 258 (853)
+.|-..++-..++.......++ ..|.|++|+|||.+.++....+.+. +++++.+.+... .+.
T Consensus 25 i~g~n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~-------~~~~~yl~~~~~----------~~~ 87 (235)
T PRK08084 25 YPGDNDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQR-------GDAVGYVPLDKR----------AWF 87 (235)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-------CCCEEEEEHHHH----------HHH
T ss_conf 448869999999999857898769998999988899999999999707-------985799877986----------651
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE-EEEECHHHHHHHHHCCHHHHHCCC---
Q ss_conf 8999999860799769996362773026665543358888765312466048-997448999997300111320231---
Q gi|254780877|r 259 LKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHC-IGATTLDEYRKYIEKDPALARRFQ--- 334 (853)
Q Consensus 259 ~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~-IgaTT~~Eyrk~iEkD~Al~RRFq--- 334 (853)
...+++.+... -++.||++|.+.|....+-+ .-|++--....|.-++ +.+..+-..-....+ -|..||+
T Consensus 88 ~~~~l~~l~~~---dll~iDDi~~i~g~~~~ee~--lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~--DL~SRl~~g~ 160 (235)
T PRK08084 88 VPEVLEGMEQL---SLVCIDNIECIAGDELWEMA--IFDLYNRILESGKTRLLITGDRPPRQLNLGLP--DLASRLDWGQ 160 (235)
T ss_pred HHHHHHHHHHC---CEEEEECHHHHCCCHHHHHH--HHHHHHHHHHHCCCEEEEECCCCHHHCCCCCH--HHHHHHHCCC
T ss_conf 79999876418---98998274554699789999--99999999984896699967988243023128--8999995697
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 11115777678999999978986541496101589999986333202457674778999999999
Q gi|254780877|r 335 SLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASA 399 (853)
Q Consensus 335 ~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A 399 (853)
.+.+++|+.++-+.||+... ...|+.++++.+.+.++-..|=+.. =..+++-||.++-
T Consensus 161 ~~~i~~~dde~~~~iL~~~a----~~rgl~l~~~V~~yl~~~~~R~~~~---L~~~l~~Ld~~Sl 218 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRA----RLRGFELPEDVGRFLLKRLDREMRT---LFMTLDQLDKASI 218 (235)
T ss_pred EEEECCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHH
T ss_conf 27855999899999999999----9739999989999999861588999---9999999999999
No 194
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.47 E-value=5.8e-06 Score=67.41 Aligned_cols=206 Identities=19% Similarity=0.358 Sum_probs=129.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC----CHHHCCCCHHC
Q ss_conf 99999987410123656651289872678616889999999872377653002244774034532----01304771120
Q gi|254780877|r 579 SVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV----SRLIGSPPGYV 654 (853)
Q Consensus 579 ~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~v----s~LiGappGYv 654 (853)
-+.-.-+|...||+..+.-+ -++|-|.||+|||..|+.||+.+++ |+=.+=-|-| +=|+| -|+
T Consensus 24 ~i~i~~kR~~~GLk~~~~~L-HMiFKGNPGTGKTTVAR~~gklf~e---------mnvL~KGH~iE~ERADLVG---EYI 90 (261)
T TIGR02881 24 WIQINEKRKEEGLKTSKQVL-HMIFKGNPGTGKTTVARLLGKLFKE---------MNVLSKGHLIEVERADLVG---EYI 90 (261)
T ss_pred HHHHHHHHHHHHHCCCCCEE-EEEEECCCCCCHHHHHHHHHHHHHH---------CCCCCCCCEEEEEECCCCC---CCC
T ss_conf 99998888751011488447-8774278668438999999999853---------3756788678876222122---320
Q ss_pred CCCCCCCCC-HHHHCCCCCEEEEHHHHHC--------CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf 356677421-1322156410220214414--------9899999999840457887999778303315595485126876
Q gi|254780877|r 655 GYEEGGALT-EAVRRHPYQVVLFDEIEKA--------HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL 725 (853)
Q Consensus 655 G~~~gg~Lt-e~vr~~P~sVil~DEiEKa--------h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~ 725 (853)
||.. +=| +.|++---.|++.||-=-- ..+-.|.|-.-++|-+ .+-|+|+-
T Consensus 91 GHTA--qkTRe~~kkA~GGvLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~-----------~~lvlILA-------- 149 (261)
T TIGR02881 91 GHTA--QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQR-----------NELVLILA-------- 149 (261)
T ss_pred CCHH--HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC-----------CCEEEEEE--------
T ss_conf 3004--89999999863880055777776148888766208889999876156-----------98689970--------
Q ss_pred HCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHH----HHHHHHHC
Q ss_conf 40326799999999986288577266681586288998999999999999999999857989999889----99999970
Q gi|254780877|r 726 IEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQ----VIDWLSCR 801 (853)
Q Consensus 726 ~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~----~~~~l~~~ 801 (853)
.-.++|.--+ .+.|-|-.|+.=.+-|..++.+++-.|+..++++ +.+.| |++ +.++|...
T Consensus 150 -GY~~EM~yFL------~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~-------ReY~L--t~~A~~~lr~~l~~~ 213 (261)
T TIGR02881 150 -GYSDEMDYFL------SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-------REYKL--TEEAKWKLREHLAKV 213 (261)
T ss_pred -CCHHHHHHHH------HCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH-------HHHCC--CHHHHHHHHHHHHHH
T ss_conf -8768999986------2077977766505418899888999999999864-------64225--788999999997412
Q ss_pred C--CCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8--98220-621579999987334999999708688
Q gi|254780877|r 802 G--YDPSY-GARPLKRVIQRYIQNPLAERVLSQTIS 834 (853)
Q Consensus 802 ~--~~~~~-GaR~l~r~i~~~i~~~la~~il~~~~~ 834 (853)
. ....+ .||-+|..|++-|-..=-+.+-...+.
T Consensus 214 ~~~~~~~~sNaR~vRN~iE~AIR~QAvRlL~~~~~~ 249 (261)
T TIGR02881 214 DQLSSREFSNARYVRNIIEKAIRRQAVRLLKKSDYS 249 (261)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 444210057620124288999999998764346435
No 195
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.47 E-value=3.3e-05 Score=61.28 Aligned_cols=200 Identities=24% Similarity=0.295 Sum_probs=140.3
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCC-CCCHHHCCC------------E
Q ss_conf 9872985333335789999999633677786-6895288740777999999987348-998444574------------3
Q gi|254780877|r 171 EARNGKLDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIING-DIPESLKGK------------R 236 (853)
Q Consensus 171 ~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~-~vp~~l~~~------------~ 236 (853)
+-|=-.++=|||=|-=++-+...|-..+=++ =++-|+=|||||+++.=||.-+.=. .-+++=-.| =
T Consensus 7 KyRP~~F~d~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~~D 86 (363)
T TIGR02397 7 KYRPQTFEDVIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSSLD 86 (363)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 23788611023517999999999971896623450285997635589999998658878778777750227765289866
Q ss_pred EEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHCCC--CEEE
Q ss_conf 78873135421745420245458999999860799---76999636277302666554335888-876531246--6048
Q gi|254780877|r 237 LMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDG---EIILFIDELHVLVGAGKTDGAMDASN-LLKPSLARG--ELHC 310 (853)
Q Consensus 237 i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~---~~ilfide~h~~~gaG~~~g~~Daan-~LKP~LarG--~l~~ 310 (853)
|+++| |||.+|= +-++.|++.+.=+|- ==|--|||+||| |..|=| +|| .|..- -..+
T Consensus 87 viEiD------AASN~gV--D~IR~l~e~v~y~P~~~kYKvYIIDEVHML--------S~~AFNALLK-TLEEPP~hV~F 149 (363)
T TIGR02397 87 VIEID------AASNNGV--DDIRELRENVKYAPSKGKYKVYIIDEVHML--------SKSAFNALLK-TLEEPPEHVVF 149 (363)
T ss_pred EEEEC------CCCCCCH--HHHHHHHHHHCCCCCCCCCCEEEEECCCCC--------CHHHHHHHHH-HHCCCCCCEEE
T ss_conf 68864------8656878--899999873036875544335887323028--------6568999876-52279876288
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA 390 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA 390 (853)
|=||| |++|-- .. .-.|=|+-.-+-=+.++-+.-|+.+...= ++.|.++||+..++.|+==+.| |
T Consensus 150 IlATT--E~~KiP--~T-IlSRCQrF~Fk~i~~~~i~~~L~~I~~~E----~I~~e~~AL~~IA~~a~GS~RD------A 214 (363)
T TIGR02397 150 ILATT--EPHKIP--AT-ILSRCQRFDFKRIPLEDIVERLKKILDKE----GIKIEDEALELIARAADGSMRD------A 214 (363)
T ss_pred EEECC--CHHHCC--CC-CEEECEEECCCCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCCCCH------H
T ss_conf 87348--711205--54-02100031267899899999999999870----8831778999999962896106------8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999875
Q gi|254780877|r 391 IDLMDEASARVR 402 (853)
Q Consensus 391 IDllDeA~A~~~ 402 (853)
..|||.+.+.-.
T Consensus 215 lsllDQ~~~~~~ 226 (363)
T TIGR02397 215 LSLLDQAISFGN 226 (363)
T ss_pred HHHHHHHHHHCC
T ss_conf 899999998268
No 196
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=5.9e-05 Score=59.23 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHH----CCCCHHHHH-HHCCCCHHHHHHHHHHHHC
Q ss_conf 870259998766872----775178899-9759998999999998737
Q gi|254780877|r 103 DSFVTAEKFLLAMVM----ETGGIGESL-KKCGLKFSRLEESIKKLRK 145 (853)
Q Consensus 103 ~~~I~~ehLLlAIl~----e~~s~a~iL-~~~gi~~~~l~e~i~~~~~ 145 (853)
++.|+.+|++-++.. .+-.++++| -.-|+-+..+-..+.+..+
T Consensus 16 ~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lN 63 (704)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (704)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 564186999999999998199752375027898788899999999967
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.46 E-value=9.7e-08 Score=81.85 Aligned_cols=119 Identities=24% Similarity=0.275 Sum_probs=72.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCH---HH-CCCCHHCCCCCCCCCCHHHHCCCCCEE
Q ss_conf 28987267861688999999987237765300224477403453201---30-477112035667742113221564102
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSR---LI-GSPPGYVGYEEGGALTEAVRRHPYQVV 674 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~---Li-GappGYvG~~~gg~Lte~vr~~P~sVi 674 (853)
...++.||+|+|||.+++.+|..+......++.++++.+.+...... .. ...+.+.+...-..+.+.+++.+++|+
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 78999999970299999999987266899689987599898889876530001122105199999999999984499899
Q ss_pred EEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCH
Q ss_conf 2021441498999999998404578879997783033155954851
Q gi|254780877|r 675 LFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNL 720 (853)
Q Consensus 675 l~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~ 720 (853)
++||+++..+............ ...........+..+|+|+|.
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vi~~~n~ 125 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEECCHHHCCCCCHHHHHHHHH---HHHHCCCCCCCCEEEEEEECC
T ss_conf 9827502147620799999999---998517657899899995699
No 198
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.46 E-value=4.3e-06 Score=68.51 Aligned_cols=204 Identities=21% Similarity=0.362 Sum_probs=118.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH------
Q ss_conf 29853333357899999996336--7778668952887407779999999873489984445743788731354------
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL------ 245 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l------ 245 (853)
.+...++||....++++.+.+.| ++..++++.||+|+||..++..+-+.= .-.+...+.+|.+++
T Consensus 134 ~~~~~~liG~S~~m~~v~~~i~~~a~~~~pVLI~GE~GTGK~~~Ar~IH~~S-------~r~~~pfi~vnC~~~~~~~~e 206 (469)
T PRK10923 134 NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS-------PRAKAPFIALNMAAIPKDLIE 206 (469)
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC-------CCCCCCCEEEECCCCCHHHHH
T ss_conf 0675565468999999999999985889978998989826999999999748-------877999578767889977899
Q ss_pred --HCCCCCCCHHHHH---HHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------C
Q ss_conf --2174542024545---899999986079976999636277302666554335888876531246-------------6
Q gi|254780877|r 246 --IAGAKFRGEFEER---LKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG-------------E 307 (853)
Q Consensus 246 --~ag~~~rg~~e~r---~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG-------------~ 307 (853)
+-| ..+|.|..- ..+.+++ +++. -||+|||+.+ +.+.-.-|--.|..| +
T Consensus 207 ~eLFG-~~~gaf~ga~~~~~g~~e~---a~~G-TLfLdeI~~L--------~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d 273 (469)
T PRK10923 207 SELFG-HEKGAFTGANTIRQGRFEQ---ADGG-TLFLDEIGDM--------PLDVQTRLLRVLADGQFYRVGGYAPVKVD 273 (469)
T ss_pred HHHHC-CCCCCCCCCCCCCCCCHHH---CCCC-CEEHHHHHHC--------CHHHHHHHHHHHHCCCEEECCCCCEEEEC
T ss_conf 99708-7667878864245873664---3899-2656636648--------99999999999855937857998512214
Q ss_pred EEEEEEECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCC
Q ss_conf 0489974489999973001---113202311111577767899999997898654149610158999998633320-245
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY-ITD 383 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY-i~~ 383 (853)
+|+|.+|+.+= ...++.. .-|--|+..+.|.=|+-.+-.+=+.-+...| .-..+.+| ..-
T Consensus 274 ~RiIaat~~~L-~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~~~f---------------l~~~~~~~~~~~ 337 (469)
T PRK10923 274 VRIIAATHQNL-EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHF---------------LQVAARELGVEA 337 (469)
T ss_pred CEEEEECCCCH-HHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHH---------------HHHHHHHCCCCC
T ss_conf 37997078799-99866081779999864424015846544653499999999---------------999999859997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 767477899999999987541022214578879999974
Q gi|254780877|r 384 RFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICL 422 (853)
Q Consensus 384 r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l 422 (853)
+.+...|+.+ +..+.+|-.+.++++.++++
T Consensus 338 ~~~s~~a~~~---------L~~y~WPGNvrEL~n~ier~ 367 (469)
T PRK10923 338 KLLHPETEAA---------LTRLAWPGNVRQLENTCRWL 367 (469)
T ss_pred CCCCHHHHHH---------HHCCCCCCHHHHHHHHHHHH
T ss_conf 8789999999---------97499998799999999999
No 199
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.46 E-value=2.6e-05 Score=62.06 Aligned_cols=150 Identities=31% Similarity=0.487 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHC-CCCCCCEEEECCCCCCHHHHHHHHHHHHHC-----C---------CCCHHH---------CCC
Q ss_conf 3335789999999633-677786689528874077799999998734-----8---------998444---------574
Q gi|254780877|r 180 VIGRDDEMRRAIQVLS-RRTKNNPVLIGDPGVGKTAIIEGLASRIIN-----G---------DIPESL---------KGK 235 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~-r~~k~n~~lvGe~GvGKtaive~la~~i~~-----~---------~vp~~l---------~~~ 235 (853)
|+| .++.++-+.+.. --.-.|+++.|+||.|||.++.+|+..+-. + ..|+.. +..
T Consensus 10 IvG-Qe~~K~AL~laav~p~~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (334)
T PRK13407 10 IVG-QEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEVSSTTMVERPT 88 (334)
T ss_pred HCC-CHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
T ss_conf 649-3999999999772789860899789986599999999972899511036755667742113343114555344899
Q ss_pred EE-------------EEEEHH-HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 37-------------887313-5421745420245458999999860799769996362773026665543358888765
Q gi|254780877|r 236 RL-------------MALDMG-ALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKP 301 (853)
Q Consensus 236 ~i-------------~~ld~~-~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP 301 (853)
.+ -++|+. +|..|.+ .|+- +++. .++ +=|||+||+.-+= -..-++|--
T Consensus 89 p~v~lPl~atedr~~G~ldie~al~~G~~---~~~P---GlLa---~Ah-~GVLylDEinll~--------~~vld~Ll~ 150 (334)
T PRK13407 89 PVIDLPLGATEDRVVGALDIERALTRGEK---AFEP---GLLA---RAN-RGYLYIDEVNLLE--------DHIVDLLLD 150 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CCCC---CHHH---HCC-CCEEEEECHHHCC--------HHHHHHHHH
T ss_conf 87678999998664474218888626987---7886---0543---402-8867872053333--------889999998
Q ss_pred HHCCCC---------------EEEEEEECHHHHHHHHHCCHHHHHCCC-EEECCCC-CHHHHHHHHHH
Q ss_conf 312466---------------048997448999997300111320231-1111577-76789999999
Q gi|254780877|r 302 SLARGE---------------LHCIGATTLDEYRKYIEKDPALARRFQ-SLLVGEP-TVTDTISILRG 352 (853)
Q Consensus 302 ~LarG~---------------l~~IgaTT~~Eyrk~iEkD~Al~RRFq-~i~V~Ep-s~~~t~~iL~g 352 (853)
+++.|. +.+||+.-|+|- +=-+.|-.||- .|.|..| +.++-++|++.
T Consensus 151 ~~e~G~~~IeReg~s~~~ParF~LVatmNPeEg----~Lrp~lLDRf~l~v~v~~~~~~~~r~eiv~r 214 (334)
T PRK13407 151 VAQSGENVVEREGLSIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLSVEVRSPRDVETRVEVITR 214 (334)
T ss_pred HHHCCCEEEEECCEEEECCCCCEEEEEECCCCC----CCCHHHHHHHCEEEEECCCCCHHHHHHHHHH
T ss_conf 871695799977634603662658982088877----7598998361006871487887776688999
No 200
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.45 E-value=3e-07 Score=77.86 Aligned_cols=116 Identities=23% Similarity=0.273 Sum_probs=65.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCC---CCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 668952887407779999999873489984445743788731354217454---20245458999999860799769996
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKF---RGEFEERLKSLLCEIRSEDGEIILFI 277 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~---rg~~e~r~~~i~~~~~~~~~~~ilfi 277 (853)
+++|+|+||+|||++++.+|+.+....+ ...... -..+...|+.+..+ ...|.. ..+...+ . + .-+||+
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~--~~i~~~-~~~~~~dl~G~~~~~~~~~~~~~--g~l~~a~-~-~-g~vl~l 72 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPV--FYVQLT-RDTTEEDLKGRRNIANGTTSWVD--GPLVRAA-R-E-GEIAVL 72 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCC--HHHCCC-CCCCHHHCCCCEECCCCCEEEEC--CHHHCCC-C-C-CCEEEE
T ss_conf 9899989975699999999998079831--112146-55652220573423799357815--5141010-1-2-868996
Q ss_pred CCHHHHCCCCCCCCCCCHHHHHHHHHCCC--------------------CEEEEEEECHHHHHHHHHCCHHHHHCC
Q ss_conf 36277302666554335888876531246--------------------604899744899999730011132023
Q gi|254780877|r 278 DELHVLVGAGKTDGAMDASNLLKPSLARG--------------------ELHCIGATTLDEYRKYIEKDPALARRF 333 (853)
Q Consensus 278 de~h~~~gaG~~~g~~Daan~LKP~LarG--------------------~l~~IgaTT~~Eyrk~iEkD~Al~RRF 333 (853)
|||... +-++-+.|-+.|..+ .+++|++.-+. |+...+=|+||.+||
T Consensus 73 DEin~a--------~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~-~~g~~~l~~Al~~RF 139 (139)
T pfam07728 73 DEINRA--------NPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL-DRGLNELSPALRSRF 139 (139)
T ss_pred CCHHHC--------CHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC-CCCCCCCCHHHHCCC
T ss_conf 343448--------9999999999974896983689727336666789996999975896-547800998997509
No 201
>PRK08727 hypothetical protein; Validated
Probab=98.45 E-value=2.2e-05 Score=62.70 Aligned_cols=169 Identities=22% Similarity=0.320 Sum_probs=100.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
.+.+.||+|+|||.|+.+++...-........+++.++.. .+|.- .+.+ ....+|.+|.|
T Consensus 43 ~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~---------~~~~~---------l~~l--e~~~ll~iDDi 102 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAG---------RLRDA---------LEAL--EGRSLVALDGV 102 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHH---------HHHHH---------HHHH--CCCCEEEEECC
T ss_conf 8999899999889999999999982799728844788532---------02567---------7531--03897898550
Q ss_pred HHCC--HH----HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC
Q ss_conf 4149--89----99999998404578879997783033155954851268764032679999999998628857726668
Q gi|254780877|r 680 EKAH--SD----VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD 753 (853)
Q Consensus 680 EKah--~~----v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid 753 (853)
|... ++ +|+++=++.+.| +-+++||+.....+. ...|.+..|+.
T Consensus 103 d~i~g~~~~e~aLFhL~N~~~~~~--------------~~ll~ts~~~P~~l~----------------~~l~DL~SRL~ 152 (233)
T PRK08727 103 DSIAGQREDEVALFDFHNRARAAG--------------ITLLYTARQMPDGLA----------------LVLPDLRSRLS 152 (233)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHHC----------------CCHHHHHHHHH
T ss_conf 112698279999999999998619--------------838997798956623----------------10021999996
Q ss_pred --CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHH----------HH
Q ss_conf --158628899899999999999999999985798999988999999970898220621579999987----------33
Q gi|254780877|r 754 --EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRY----------IQ 821 (853)
Q Consensus 754 --~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~----------i~ 821 (853)
.++...|++.+....++.. +...+|+. +++++.+||+.+. +..+ +.+.+++.+. |.
T Consensus 153 ~~~~~~l~~~dD~~~~~iL~~-------~a~~rgl~--l~~~V~~Yll~r~-~R~~--~~l~~~l~~LD~~SL~~kr~iT 220 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRD-------RAQRRGLA--LDEAAIDWLLTHG-EREL--AGLVALLDRLDRESLAAKRRIT 220 (233)
T ss_pred CCCEEEECCCCHHHHHHHHHH-------HHHHCCCC--CCHHHHHHHHHHC-CCCH--HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 692288578897999999999-------99986999--9989999999856-8899--9999999999999998089888
Q ss_pred HHHHHHHHC
Q ss_conf 499999970
Q gi|254780877|r 822 NPLAERVLS 830 (853)
Q Consensus 822 ~~la~~il~ 830 (853)
-|+++.+|.
T Consensus 221 ip~vk~vL~ 229 (233)
T PRK08727 221 VPFLRRVLE 229 (233)
T ss_pred HHHHHHHHH
T ss_conf 999999997
No 202
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.43 E-value=1.2e-05 Score=64.74 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=114.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC----
Q ss_conf 29853333357899999996336--777866895288740777999999987348998444574378873135421----
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA---- 247 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---- 247 (853)
.|-.|-+||...-++++.+.+.| ++..++++.||+|+||+.++..+-..=-. .+..++.+|.+.+-.
T Consensus 2 ~~~~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r-------~~~pfi~v~C~~l~~~~~e 74 (325)
T PRK11608 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLD 74 (325)
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC-------CCCCCEEEECCCCCHHHHH
T ss_conf 877899858999999999999999688999898898983799999999965886-------7999778877989977889
Q ss_pred ----CCCCCCHHHHH---HHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-------------CC
Q ss_conf ----74542024545---89999998607997699963627730266655433588887653124-------------66
Q gi|254780877|r 248 ----GAKFRGEFEER---LKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-------------GE 307 (853)
Q Consensus 248 ----g~~~rg~~e~r---~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-------------G~ 307 (853)
|.. .|-|-.- -.+.+ ..++|. -||+|||+.+ +.++-.-|--+|.. -+
T Consensus 75 ~~LFG~~-~g~~~~~~~~~~g~l---e~a~gG-TL~L~eI~~l--------~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~ 141 (325)
T PRK11608 75 SELFGHE-AGAFTGAQKRHPGRF---ERADGG-TLFLDELATA--------PMLVQEKLLRVIEYGELERVGGSQPLQVN 141 (325)
T ss_pred HHHCCCC-CCCCCCCCCCCCCHH---HCCCCC-EEEEECHHHC--------CHHHHHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 9872775-567677532468734---356898-6997374547--------99999999999864908857998766564
Q ss_pred EEEEEEECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0489974489999973001---1132023111115777678999999978986541496101589999986333202457
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDR 384 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r 384 (853)
+|+|++|+- .-.+.++.. .-|--||..+.|.=|+-.+-.+=+.-+...| ...++.+|=...
T Consensus 142 ~RiIa~t~~-~l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~f---------------l~~~~~~~~~~~ 205 (325)
T PRK11608 142 VRLVCATNA-DLPAMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHF---------------AIQMCRELGLPL 205 (325)
T ss_pred EEEEECCCH-HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHH---------------HHHHHHHCCCCC
T ss_conf 688713322-0899998395679998565301115868454710199999999---------------999999829998
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf --67477899999999987541022214578879999974
Q gi|254780877|r 385 --FLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICL 422 (853)
Q Consensus 385 --~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l 422 (853)
.+.+.|+ -.+..+.+|-.+.++++.+++.
T Consensus 206 ~~~~s~~a~---------~~L~~y~WPGNvrEL~n~iera 236 (325)
T PRK11608 206 FPGFTERAR---------ETLLNYRWPGNIRELKNVVERS 236 (325)
T ss_pred CCCCCHHHH---------HHHHCCCCCCHHHHHHHHHHHH
T ss_conf 888899999---------9996199996599999999999
No 203
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.43 E-value=0.00013 Score=56.46 Aligned_cols=34 Identities=38% Similarity=0.351 Sum_probs=15.6
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 024576747789999999998754102221457887
Q gi|254780877|r 380 YITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDEL 415 (853)
Q Consensus 380 Yi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l 415 (853)
|++||+.- ||+-|| .|||..-=+..-.|..+--+
T Consensus 247 YVSDRRWk-Kav~LL-kasAf~~GR~eV~~~DllLL 280 (498)
T PRK13531 247 YVSDRRWK-KAIRLL-QASAFFSGRDAVAPIDLILL 280 (498)
T ss_pred EEECHHHH-HHHHHH-HHHHHCCCCCCCCHHHHHHH
T ss_conf 55766899-999999-99875169553779888998
No 204
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.42 E-value=4.4e-06 Score=68.41 Aligned_cols=138 Identities=26% Similarity=0.412 Sum_probs=100.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 66895288740777999999987348998444574378873135421745420245458999999860799769996362
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDEL 280 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~ 280 (853)
.++|-|+||.|||-++..+|... +...+.+=-+-|| .||=||=..-++.|.+-+++. .+.|+|||||
T Consensus 158 GvLLyGPPGtGKTLlAKAvA~et----------~ATFIrvVgSElV--~KyIGEGArLV~~~F~LAkEK-aPsIiFIDEi 224 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELV--RKYIGEGARLVREVFELAKEK-APSIIFIDEI 224 (364)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC----------CCEEEEEEHHHHH--HHHHCCHHHHHHHHHHHHHCC-CCCEEEEECH
T ss_conf 65700757976889999863145----------5126886044444--444133168999999985306-9816861013
Q ss_pred HHHCCCCCCC--CCCC--HHH-------HHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCEE-ECCCCCHHHH
Q ss_conf 7730266655--4335--888-------8765312466048997448999997300111320--23111-1157776789
Q gi|254780877|r 281 HVLVGAGKTD--GAMD--ASN-------LLKPSLARGELHCIGATTLDEYRKYIEKDPALAR--RFQSL-LVGEPTVTDT 346 (853)
Q Consensus 281 h~~~gaG~~~--g~~D--aan-------~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~i-~V~Eps~~~t 346 (853)
-.| +|-+.+ .|.| +-- =|--.=+||+.++||||---.- =|||+-| ||.++ .|.=|+.+--
T Consensus 225 DAi-aakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~Di-----lDPA~LRPGRFDR~IEVPlP~~~GR 298 (364)
T TIGR01242 225 DAI-AAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI-----LDPAILRPGRFDRIIEVPLPDFEGR 298 (364)
T ss_pred HHH-HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHH-----CCCCCCCCCCCCCEEECCCCCCCCH
T ss_conf 335-4321146778731578899999975248887676168872076202-----0432148886132573169783220
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999978986
Q gi|254780877|r 347 ISILRGLKERY 357 (853)
Q Consensus 347 ~~iL~gl~~~y 357 (853)
++||+=...+.
T Consensus 299 ~eIlkiHTr~~ 309 (364)
T TIGR01242 299 LEILKIHTRKM 309 (364)
T ss_pred HHHHHHHHCCC
T ss_conf 56655521000
No 205
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.42 E-value=1.5e-05 Score=64.15 Aligned_cols=203 Identities=16% Similarity=0.205 Sum_probs=114.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC-----
Q ss_conf 9853333357899999996336--777866895288740777999999987348998444574378873135421-----
Q gi|254780877|r 175 GKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA----- 247 (853)
Q Consensus 175 GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a----- 247 (853)
...+.+||+..-++++.+.+.| .+..++++.||+|+||..++..+-+.= .-++.-.+.+|.+++-.
T Consensus 140 ~~~~~lig~S~~m~~v~~~i~~~A~s~~~VLI~GEsGTGKe~~Ar~IH~~S-------~r~~~pFv~vnc~ai~~~l~es 212 (457)
T PRK11361 140 WQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS-------RRAKGPFIKVNCAALPESLLES 212 (457)
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC-------CCCCCCEEEEECCCCCHHHHHH
T ss_conf 456774546999999999999984889958998899857899999999837-------9889983876478798577899
Q ss_pred ---CCCCCCHHHHHH---HHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CE
Q ss_conf ---745420245458---99999986079976999636277302666554335888876531246-------------60
Q gi|254780877|r 248 ---GAKFRGEFEERL---KSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG-------------EL 308 (853)
Q Consensus 248 ---g~~~rg~~e~r~---~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG-------------~l 308 (853)
|-. +|.|-.-. .++++. ++|. -||+|||+.+ +.+.-.-|--.|..| ++
T Consensus 213 eLFG~~-kgaftga~~~~~G~~e~---A~gG-TLfLdeI~~l--------~~~~Q~kLLr~L~~~~~~~~g~~~~~~~dv 279 (457)
T PRK11361 213 ELFGHE-KGAFTGAQTLRQGLFER---ANEG-TLLLDEIGEM--------PLVLQAKLLRILQEREFERIGGHQTIKVDI 279 (457)
T ss_pred HHHCCC-CCCCCCCCCCCCCCHHH---CCCC-CEECCCHHHH--------HHHHHHHHHHHHHCCCEEECCCCCEEEECC
T ss_conf 971876-67878853146986133---5998-2631466452--------399999999998649278569971366534
Q ss_pred EEEEEECHHHHHHHHHC---CHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCC
Q ss_conf 48997448999997300---11132023111115777678999999978986541496101589999986333202-457
Q gi|254780877|r 309 HCIGATTLDEYRKYIEK---DPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYI-TDR 384 (853)
Q Consensus 309 ~~IgaTT~~Eyrk~iEk---D~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi-~~r 384 (853)
|+|+||+.+= .+.++. ..-|--|+..+.+.=|.--+-.+=+.-+...| .-.++.+|= +-+
T Consensus 280 RiIaaT~~~L-~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~eDI~~L~~~f---------------l~~~~~~~~~~~~ 343 (457)
T PRK11361 280 RIIAATNRDL-QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHF---------------LQKFSSENQRDII 343 (457)
T ss_pred EEEECCCCCH-HHHHHCCCCHHHHHHHHCEEEEECCCHHHCHHHHHHHHHHH---------------HHHHHHHCCCCCC
T ss_conf 8996578785-99987583238899530221251738545875499999999---------------9999997499989
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 67477899999999987541022214578879999974
Q gi|254780877|r 385 FLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICL 422 (853)
Q Consensus 385 ~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l 422 (853)
.+.+.|+.. +..+.+|-.+.++++.+++.
T Consensus 344 ~~s~~a~~~---------L~~y~WPGNvREL~n~iera 372 (457)
T PRK11361 344 DIDPMAMSL---------LTAWSWPGNIRELSNVIERA 372 (457)
T ss_pred CCCHHHHHH---------HHCCCCCCHHHHHHHHHHHH
T ss_conf 889999999---------95699997999999999999
No 206
>PRK06893 DNA replication initiation factor; Validated
Probab=98.41 E-value=1.7e-05 Score=63.61 Aligned_cols=163 Identities=19% Similarity=0.324 Sum_probs=96.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
.|.+.||+|+|||.|..++...+.......+.++|++..+. +|-. .+.++ ...++++|.|
T Consensus 41 ~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~---------~~~~---------l~~l~--~~d~l~iDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF---------SPAV---------LENLE--QQDLVCLDDL 100 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHC---------CHHH---------HHHHH--HCCEEEEECH
T ss_conf 79998999998899999999999971898599973775640---------6999---------98765--4797999672
Q ss_pred HHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC--CE
Q ss_conf 414--98999999998404578879997783033155954851268764032679999999998628857726668--15
Q gi|254780877|r 680 EKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD--EI 755 (853)
Q Consensus 680 EKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid--~i 755 (853)
+.- .++....|+.++.. ..+-.++++++||+.....+. ..-|.+..|+- .+
T Consensus 101 ~~i~g~~~~e~~lF~l~N~---------l~~~~~~~ll~ss~~~p~~l~----------------~~l~DL~SRl~~~~~ 155 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNR---------IKESGKTLLLISANQSPHALQ----------------IKLPDLASRLTWGEI 155 (229)
T ss_pred HHHCCCHHHHHHHHHHHHH---------HHHCCCCEEEEECCCCHHHHC----------------CHHHHHHHHHHCCEE
T ss_conf 3424883899999999999---------997599179985798833221----------------002679999968836
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 8628899899999999999999999985798999988999999970898220621579999987
Q gi|254780877|r 756 ILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 756 v~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~ 819 (853)
+...|++.+....|+.. +...+|+. +++++++||+++ ++..+ |.+..++.+.
T Consensus 156 ~~i~~~dd~~~~~iL~~-------~a~~rgl~--l~~~v~~yl~~r-~~R~~--~~l~~~l~~L 207 (229)
T PRK06893 156 YQLNDLTDEQKIEVLQR-------NAYQRGIE--LSDETANFLLKR-LDRDM--HTLFDALDLL 207 (229)
T ss_pred EEECCCCHHHHHHHHHH-------HHHHCCCC--CCHHHHHHHHHH-HCCCH--HHHHHHHHHH
T ss_conf 99667775799999999-------99964999--998999999998-34789--9999999999
No 207
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=0.00012 Score=56.68 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHH----CCCCHHHHH-HHCCCCHHHHHHHHHHHHC
Q ss_conf 9870259998766872----775178899-9759998999999998737
Q gi|254780877|r 102 GDSFVTAEKFLLAMVM----ETGGIGESL-KKCGLKFSRLEESIKKLRK 145 (853)
Q Consensus 102 g~~~I~~ehLLlAIl~----e~~s~a~iL-~~~gi~~~~l~e~i~~~~~ 145 (853)
-++.|+.+|++-++-. .+-.++++| -.-|+-+..+-..+.+..+
T Consensus 15 F~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~ln 63 (721)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (721)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 6553285999999999997199754475027998889899999999976
No 208
>KOG0732 consensus
Probab=98.40 E-value=3.4e-06 Score=69.30 Aligned_cols=164 Identities=30% Similarity=0.393 Sum_probs=100.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 86689528874077799999998734899844457437887313542174542024545899999986079976999636
Q gi|254780877|r 200 NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDE 279 (853)
Q Consensus 200 ~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide 279 (853)
+.+++-|+||.|||.++-.||--...+. +..-.|.-+-+... .++.||-|+-++-+.+|.+.. .+.|.|.||
T Consensus 300 rgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmrkgaD~l--skwvgEaERqlrllFeeA~k~-qPSIIffde 371 (1080)
T KOG0732 300 RGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMRKGADCL--SKWVGEAERQLRLLFEEAQKT-QPSIIFFDE 371 (1080)
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHCCCC-----CCCCHHHHCCCHHH--CCCCCCHHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf 6323028998725688886665405411-----02024431484433--254475778899889887444-851773055
Q ss_pred HHHHC--CCCCCC--CCCCHHHHH---HHHHCCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCEE-ECCCCCHHHHHHH
Q ss_conf 27730--266655--433588887---65312466048997448999997300111320--23111-1157776789999
Q gi|254780877|r 280 LHVLV--GAGKTD--GAMDASNLL---KPSLARGELHCIGATTLDEYRKYIEKDPALAR--RFQSL-LVGEPTVTDTISI 349 (853)
Q Consensus 280 ~h~~~--gaG~~~--g~~Daan~L---KP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~i-~V~Eps~~~t~~i 349 (853)
|.-+- -+..++ .+-=.+++| --.=+||...+||||--..| -|+||-| ||... .-.=|+.+.-..|
T Consensus 372 IdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda-----~dpaLRRPgrfdref~f~lp~~~ar~~I 446 (1080)
T KOG0732 372 IDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA-----IDPALRRPGRFDREFYFPLPDVDARAKI 446 (1080)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCC-----CCHHHCCCCCCCEEEEEECCCHHHHHHH
T ss_conf 56646565366777445677778876047777786589715678332-----4654428866652575037866788899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9997898654149610158999998633320
Q gi|254780877|r 350 LRGLKERYEQHHKVRISDSALVSAAVLSNRY 380 (853)
Q Consensus 350 L~gl~~~yE~~H~V~i~d~al~~av~ls~rY 380 (853)
|.--....+ =.++..-+...+..+.-|
T Consensus 447 l~Ihtrkw~----~~i~~~l~~~la~~t~gy 473 (1080)
T KOG0732 447 LDIHTRKWE----PPISRELLLWLAEETSGY 473 (1080)
T ss_pred HHHHCCCCC----CCCCHHHHHHHHHHCCCC
T ss_conf 987515777----887778999998862340
No 209
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.40 E-value=7.5e-05 Score=58.37 Aligned_cols=204 Identities=19% Similarity=0.291 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC-----C-------CCCH-----------------
Q ss_conf 3335789999999633677786689528874077799999998734-----8-------9984-----------------
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIIN-----G-------DIPE----------------- 230 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~-----~-------~vp~----------------- 230 (853)
|+|-++=...++-.+--.+-.++++-|++|+|||++|.+||..+-. | ..|+
T Consensus 14 IvGQe~~k~aLll~av~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~~~~~~~~~~~~~~ 93 (347)
T CHL00081 14 IVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSDEVRERIRNGEKIP 93 (347)
T ss_pred HCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 53849999999998257887869987899874999999999857874220688767898981002426665431466675
Q ss_pred -HHCCCEEEEEEHHHH---HCCCC--------CCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHH
Q ss_conf -445743788731354---21745--------420245458999999860799769996362773026665543358888
Q gi|254780877|r 231 -SLKGKRLMALDMGAL---IAGAK--------FRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNL 298 (853)
Q Consensus 231 -~l~~~~i~~ld~~~l---~ag~~--------~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~ 298 (853)
......+++|-+++- +-|+- .+--|+. .++.+ ++++ |||||||.-+= -...|.
T Consensus 94 ~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~p---GlLa~---A~rG-iLyvDEINll~--------d~~v~~ 158 (347)
T CHL00081 94 TKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEP---GLLAK---ANRG-ILYVDEVNLLD--------DHLVDI 158 (347)
T ss_pred CEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCC---CHHHH---CCCC-EEEEEHHHHHH--------HHHHHH
T ss_conf 211468625368888523011400099898458711565---31222---0388-58861454323--------799999
Q ss_pred HHHHHCCCC---------------EEEEEEECHHHHHHHHHCCHHHHHCCC-EEECC-CCCHHHHHHHHHHHHHHHHHH-
Q ss_conf 765312466---------------048997448999997300111320231-11115-777678999999978986541-
Q gi|254780877|r 299 LKPSLARGE---------------LHCIGATTLDEYRKYIEKDPALARRFQ-SLLVG-EPTVTDTISILRGLKERYEQH- 360 (853)
Q Consensus 299 LKP~LarG~---------------l~~IgaTT~~Eyrk~iEkD~Al~RRFq-~i~V~-Eps~~~t~~iL~gl~~~yE~~- 360 (853)
|--+++.|. +-+||+.-|+|.- =-++|.-||- .|.|. +++.++-++|++--. .|+..
T Consensus 159 LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NPeEge----Lrp~llDRF~l~v~v~~~~~~e~R~eiv~~r~-~f~~~p 233 (347)
T CHL00081 159 LLDSAASGWNTVEREGISIRHPARFVLIGSGNPEEGE----LRPQLLDRFGMHAEIRTVKDPELRVKIVEQRS-NFDKNP 233 (347)
T ss_pred HHHHHHCCEEEECCCCEEECCCCCEEEEECCCCCCCC----CCHHHHHHEEEEEECCCCCCHHHHHHHHHHHH-HHHHCH
T ss_conf 9999855808980464233057500688557865567----48888826322674588789899999999999-765196
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----4961015899999863332024576747789999999998754
Q gi|254780877|r 361 ----HKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRM 403 (853)
Q Consensus 361 ----H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i 403 (853)
....-..+.+..-+..+...+++=..||..+..+-+.|....+
T Consensus 234 ~~f~~~~~~~~~~l~~~I~~Ar~~L~~V~v~~~~~~~i~~~~~~~~v 280 (347)
T CHL00081 234 ENFREKYSESQDALKTQIILARQLLPNVEIDYDLRVKISQICSELDV 280 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999988789999999999986447735599999999999998489
No 210
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.40 E-value=0.00042 Score=52.29 Aligned_cols=155 Identities=19% Similarity=0.312 Sum_probs=97.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHH----HHHHHHCCCCE
Q ss_conf 77866895288740777999999987348998444574378873135421745420245458999----99986079976
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSL----LCEIRSEDGEI 273 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i----~~~~~~~~~~~ 273 (853)
..|-..|.|+.|.|||.+.+..+-.+..... +.+++-+...... .+-+.++ +++.++.-.--
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-----~a~v~y~~se~f~---------~~~v~a~~~~~~~~Fk~~y~~d 177 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP-----NARVVYLTSEDFT---------NDFVKALRDNEMEKFKEKYSLD 177 (408)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEECCHHHHH---------HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6895799879999789999999999986299-----8648850489989---------9999998850488888764267
Q ss_pred EEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE--CHHHHHHHHHCCHHHHHCCC---EEECCCCCHHHHHH
Q ss_conf 99963627730266655433588887653124660489974--48999997300111320231---11115777678999
Q gi|254780877|r 274 ILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT--TLDEYRKYIEKDPALARRFQ---SLLVGEPTVTDTIS 348 (853)
Q Consensus 274 ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT--T~~Eyrk~iEkD~Al~RRFq---~i~V~Eps~~~t~~ 348 (853)
.|.||+|+-+.|..+.+ .-.=+++--....|. |+|-+. +|.|--- .++-|..||+ .+.+++|+.++-+.
T Consensus 178 lllIDDiq~l~gk~~~q--eefFh~FN~l~~~~k-qIvltsdr~P~~l~~---~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 178 LLLIDDIQFLAGKERTQ--EEFFHTFNALLENGK-QIVLTSDRPPKELNG---LEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred EEEECHHHHHCCCHHHH--HHHHHHHHHHHHCCC-EEEEECCCCCHHHCC---CCHHHHHHHHCEEEEEECCCCHHHHHH
T ss_conf 35551386756771579--999999998885088-799970788322110---358899898630577527988899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999789865414961015899999863
Q gi|254780877|r 349 ILRGLKERYEQHHKVRISDSALVSAAVL 376 (853)
Q Consensus 349 iL~gl~~~yE~~H~V~i~d~al~~av~l 376 (853)
||+.. ....++.++++++...+.-
T Consensus 252 iL~kk----a~~~~~~i~~ev~~~la~~ 275 (408)
T COG0593 252 ILRKK----AEDRGIEIPDEVLEFLAKR 275 (408)
T ss_pred HHHHH----HHHCCCCCCHHHHHHHHHH
T ss_conf 99999----9865888887999999997
No 211
>KOG0744 consensus
Probab=98.40 E-value=3.7e-06 Score=69.01 Aligned_cols=144 Identities=32% Similarity=0.454 Sum_probs=94.9
Q ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC------CCCCCCCCHHHHCCCCCC-CHHHCCCCHHCCCCCCCCC
Q ss_conf 123656651289872678616889999999872377------653002244774034532-0130477112035667742
Q gi|254780877|r 590 GLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD------ENSMIRIDMSEYMEKHSV-SRLIGSPPGYVGYEEGGAL 662 (853)
Q Consensus 590 gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~------~~~lir~dMsey~e~~~v-s~LiGappGYvG~~~gg~L 662 (853)
.|-.-|| ..|+-||+|+|||.|+|+||+-|--. -.-||-++. |+. ||- |.|.|.|
T Consensus 172 nlIt~NR---liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins------hsLFSKW---------FsESgKl 233 (423)
T KOG0744 172 NLITWNR---LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS------HSLFSKW---------FSESGKL 233 (423)
T ss_pred CEEEEEE---EEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEH------HHHHHHH---------HHHHHHH
T ss_conf 4466414---89985799988227999998751465237644406999704------6788988---------7121138
Q ss_pred CHHHH-------CCCCC--EEEEHHHHHC---------------CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECC
Q ss_conf 11322-------15641--0220214414---------------989999999984045788799977830331559548
Q gi|254780877|r 663 TEAVR-------RHPYQ--VVLFDEIEKA---------------HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTS 718 (853)
Q Consensus 663 te~vr-------~~P~s--Vil~DEiEKa---------------h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~Ts 718 (853)
..++- .-|.+ .||.||+|-- .-.|.|.+|.-+| |.-...|.+|+.||
T Consensus 234 V~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD---------rlK~~~NvliL~TS 304 (423)
T KOG0744 234 VAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD---------RLKRYPNVLILATS 304 (423)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---------HHCCCCCEEEEECC
T ss_conf 999999999997178968999807878889998754137998218999999999899---------86047977999626
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 51268764032679999999998628857726668158628899899999999999999999
Q gi|254780877|r 719 NLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSL 780 (853)
Q Consensus 719 N~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~ 780 (853)
|+-.. +. -.|++|-|-+..-.|-+...+..|..-.+.++...
T Consensus 305 Nl~~s--------iD------------~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~ 346 (423)
T KOG0744 305 NLTDS--------ID------------VAFVDRADIVFYVGPPTAEAIYEILKSCIEELISS 346 (423)
T ss_pred CHHHH--------HH------------HHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 26777--------78------------88611754211038963999999999999999863
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.40 E-value=1.6e-06 Score=72.05 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=71.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCC----CCCHHHHCCCCCE
Q ss_conf 128987267861688999999987237765300224477403453201304771120356677----4211322156410
Q gi|254780877|r 598 MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGG----ALTEAVRRHPYQV 673 (853)
Q Consensus 598 ~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg----~Lte~vr~~P~sV 673 (853)
.++|+|.||+|+|||.||-++|..|-......+-+.++++.+. |-.+ |++++ .+...+. -+.+
T Consensus 96 ~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~-----lr~t------~~~~~~~e~~~l~~l~--~~dL 162 (242)
T PRK07952 96 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA-----MKDT------FRNSETSEEQLLNDLS--NVDL 162 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-----HHHH------HHCCCCCHHHHHHHHH--CCCE
T ss_conf 8717997899997899999999999987994999779999999-----9999------8068756999999863--1898
Q ss_pred EEEHHHH--HCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHC
Q ss_conf 2202144--14989999999984045788799977830331559548512687640
Q gi|254780877|r 674 VLFDEIE--KAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIE 727 (853)
Q Consensus 674 il~DEiE--Kah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~ 727 (853)
+.+||+- +........|.||+|.=.. +-+ =.|+|||+..+.+..
T Consensus 163 LIiDdlG~e~~t~~~~~~lf~iId~Ry~--------~~k--p~IitTNl~~~eL~~ 208 (242)
T PRK07952 163 LVIDEIGVQTESRYEKVIINQIVDRRSS--------SKR--PTGMLTNSNMEEMTK 208 (242)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHH--------CCC--CEEEEECCCHHHHHH
T ss_conf 9873014665888899999999999997--------169--889981799999999
No 213
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.39 E-value=8.3e-05 Score=58.02 Aligned_cols=189 Identities=24% Similarity=0.407 Sum_probs=105.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
+..+|-+...+.+.+....--.|+ |--..|+-|..|+||+.|.|++-..+....-+||-++-....+=
T Consensus 28 ~~L~Gie~Qk~~l~~NT~~F~~G~-----pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~L~~L------- 95 (248)
T pfam05673 28 DDLVGIDRQKEALLRNTEQFLAGL-----PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGDL------- 95 (248)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHCCH-------
T ss_conf 893493999999999999998089-----86136767689898889999999986314956999878887219-------
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCCC-EEEEHHHH-HCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf 4771120356677421132215641-02202144-149899999999840457887999778303315595485126876
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPYQ-VVLFDEIE-KAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL 725 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~s-Vil~DEiE-Kah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~ 725 (853)
..|.+.++..|+- ||++|.+- .++..=+..|--+||-|. ...-.|.+|-.|||- +.+
T Consensus 96 ------------p~i~~~l~~~~~kFIiF~DDLSFe~~d~~yk~LKs~LeG~l-------~~~p~NvliYaTSNR--RHL 154 (248)
T pfam05673 96 ------------PDIVDLLRGRPYRFILFCDDLSFEEGESSYKALKSVLEGGL-------EARPDNVLIYATSNR--RHL 154 (248)
T ss_pred ------------HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCC-------CCCCCEEEEEEECCC--HHC
T ss_conf ------------99999996499757999635576789736999999965764-------468873899984270--003
Q ss_pred HCC-----H--HHH--HHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE---CHH
Q ss_conf 403-----2--679--9999999986288577266681586288998999999999999999999857989999---889
Q gi|254780877|r 726 IED-----G--DSV--HDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDF---DDQ 793 (853)
Q Consensus 726 ~~~-----~--~~~--~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~---~~~ 793 (853)
... . +++ .+.+.+. -.+-.|+.-.+.|.|.+.++...|++.+++. .++.+.- ...
T Consensus 155 i~e~~~d~~~~~ei~~~d~~eEk------lSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~-------~~~~~~~e~l~~~ 221 (248)
T pfam05673 155 IPEYMSDNEGDGEIHPGDAVEEK------LSLSDRFGLWLGFHPFDQDEYLAIVRGYAAR-------LGLPLDEEELRRE 221 (248)
T ss_pred CCHHHCCCCCCCCCCCCHHHHHH------HHHHHHCCEEEEECCCCHHHHHHHHHHHHHH-------CCCCCCHHHHHHH
T ss_conf 63332347774436725577745------3489867717850799999999999999998-------2999998999999
Q ss_pred HHHHHHHCC
Q ss_conf 999999708
Q gi|254780877|r 794 VIDWLSCRG 802 (853)
Q Consensus 794 ~~~~l~~~~ 802 (853)
|+.|-..+|
T Consensus 222 Al~wa~~rg 230 (248)
T pfam05673 222 ALQWALTRG 230 (248)
T ss_pred HHHHHHHCC
T ss_conf 999999838
No 214
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=0.0001 Score=57.20 Aligned_cols=121 Identities=25% Similarity=0.335 Sum_probs=76.8
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC------CCCCCHHHHCCC
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653------002244774034
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS------MIRIDMSEYMEK 640 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~------lir~dMsey~e~ 640 (853)
-..||||+++++.+.++|...|. --.|||+||.|||||.+|+.||+.|.- +.. -..-.|-+...-
T Consensus 14 F~eviGQe~v~~~L~~Ai~~gri--------~HAYLFsGprG~GKTt~ARilAkaLNC-~~~~~~~PCg~C~sC~~i~~g 84 (775)
T PRK07764 14 FAEVVGQEHVTEPLSTALDSGRI--------NHAYLFSGPRGCGKTSSARILARSLNC-AQGPTSTPCGVCDSCVALAPG 84 (775)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCC
T ss_conf 66622859999999999981997--------633762378887888999999999668-999998988887637888638
Q ss_pred C----CCCHHHCCCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 5----32013047711203566774211322156----4102202144149899999999840457
Q gi|254780877|r 641 H----SVSRLIGSPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 641 ~----~vs~LiGappGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ 698 (853)
+ .|--+=++. +-|-|+--.|.+.++..| |-|.++||++.-...-||.||.+|+|=-
T Consensus 85 ~~~~~DviEiDAAS--~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEEPP 148 (775)
T PRK07764 85 GPGSLDVVEIDAAS--HGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEPP 148 (775)
T ss_pred CCCCCCEEEECCCC--CCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCCCC
T ss_conf 98888668731565--56889999999854768767863599985354407999999988622786
No 215
>KOG0728 consensus
Probab=98.38 E-value=2.9e-06 Score=69.88 Aligned_cols=150 Identities=30% Similarity=0.545 Sum_probs=103.0
Q ss_pred CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCC----H
Q ss_conf 012365665128987267861688999999987237765300224477403453201304771120356677421----1
Q gi|254780877|r 589 AGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALT----E 664 (853)
Q Consensus 589 ~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lt----e 664 (853)
.|+. +|-|++| .||+|+|||-||+++|-.- +-.+||..-||. |.+.|| ||..+. -
T Consensus 176 LGIa---QPKGvlL-ygppgtGktLlaraVahht---~c~firvsgsel-----vqk~ig---------egsrmvrelfv 234 (404)
T KOG0728 176 LGIA---QPKGVLL-YGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL-----VQKYIG---------EGSRMVRELFV 234 (404)
T ss_pred CCCC---CCCCEEE-ECCCCCCHHHHHHHHHHHC---CEEEEEECHHHH-----HHHHHH---------HHHHHHHHHHH
T ss_conf 1878---8760488-4699975629999987541---407999644999-----999850---------13899999999
Q ss_pred HHHCCCCCEEEEHHHHHC-----------CHHHHHHHHHHHH--CCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHH
Q ss_conf 322156410220214414-----------9899999999840--457887999778303315595485126876403267
Q gi|254780877|r 665 AVRRHPYQVVLFDEIEKA-----------HSDVHNILLQVLD--DGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDS 731 (853)
Q Consensus 665 ~vr~~P~sVil~DEiEKa-----------h~~v~~~llqild--~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~ 731 (853)
.-|.+.-|+|+.|||+-- .++|+...|.+|. ||+=+ -+|.-+||.+|- -.+.
T Consensus 235 marehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--------tknikvimatnr--idil----- 299 (404)
T KOG0728 235 MAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--------TKNIKVIMATNR--IDIL----- 299 (404)
T ss_pred HHHHCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--------CCCEEEEEECCC--CCCC-----
T ss_conf 9875088267500001212343457898638999999999974024000--------366269984164--2224-----
Q ss_pred HHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 999999999862885772666815862889989999999999999999998579899
Q gi|254780877|r 732 VHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISM 788 (853)
Q Consensus 732 ~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l 788 (853)
. . ..++| +|||.-|-|.|-+.+....|++..-...+- -+||++
T Consensus 300 -d----~---allrp---gridrkiefp~p~e~ar~~ilkihsrkmnl---~rgi~l 342 (404)
T KOG0728 300 -D----P---ALLRP---GRIDRKIEFPPPNEEARLDILKIHSRKMNL---TRGINL 342 (404)
T ss_pred -C----H---HHCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HCCCCH
T ss_conf -6----8---66387---754555648998778887899885553013---306678
No 216
>KOG0739 consensus
Probab=98.37 E-value=5.9e-06 Score=67.37 Aligned_cols=132 Identities=27% Similarity=0.475 Sum_probs=93.5
Q ss_pred HHHCCCC--CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 9633677--78668952887407779999999873489984445743788731354217454202454589999998607
Q gi|254780877|r 192 QVLSRRT--KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSE 269 (853)
Q Consensus 192 ~iL~r~~--k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~ 269 (853)
|....++ -...+|.|+||.||+-++..+|-. .|...|++.-+-|++ +.-||-|.-++++.+-..+.
T Consensus 157 qlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE----------AnSTFFSvSSSDLvS--KWmGESEkLVknLFemARe~ 224 (439)
T KOG0739 157 QLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLVS--KWMGESEKLVKNLFEMAREN 224 (439)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----------CCCCEEEEEHHHHHH--HHHCCHHHHHHHHHHHHHHC
T ss_conf 541588775425788679997577999998741----------477068730178899--87321799999999998734
Q ss_pred CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC---------CCCEEEEEEECHHHHHHHHHCCHHHHHCCCE-EECC
Q ss_conf 99769996362773026665543358888765312---------4660489974489999973001113202311-1115
Q gi|254780877|r 270 DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA---------RGELHCIGATTLDEYRKYIEKDPALARRFQS-LLVG 339 (853)
Q Consensus 270 ~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La---------rG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~-i~V~ 339 (853)
.+-|+|||||..+-|++ +++--+++--+|-.+- ...+-+.|||..- .--|.|+-|||++ |.+.
T Consensus 225 -kPSIIFiDEiDslcg~r-~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP-----w~LDsAIRRRFekRIYIP 297 (439)
T KOG0739 225 -KPSIIFIDEIDSLCGSR-SENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP-----WVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred -CCCEEEEEHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-----HHHHHHHHHHHHCCEECC
T ss_conf -99479863444432688-77711777777778887640666588864897237884-----367799998765023010
Q ss_pred CCC
Q ss_conf 777
Q gi|254780877|r 340 EPT 342 (853)
Q Consensus 340 Eps 342 (853)
=|.
T Consensus 298 LPe 300 (439)
T KOG0739 298 LPE 300 (439)
T ss_pred CCC
T ss_conf 873
No 217
>PRK08727 hypothetical protein; Validated
Probab=98.36 E-value=8.3e-05 Score=58.04 Aligned_cols=188 Identities=16% Similarity=0.190 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHH
Q ss_conf 33357899999996336777866895288740777999999987348998444574378873135421745420245458
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERL 259 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~ 259 (853)
+.|.+..+.++........-+-..|.|++|+|||.+.++++..... .++....+++... ....
T Consensus 22 i~~~n~~~a~l~~~~~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~-------~~~~~~yl~l~~~----------~~~~ 84 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALSLCAAAEQ-------AGRSSAYLPLQAA----------AGRL 84 (233)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEEHHHH----------HHHH
T ss_conf 6785599999998743888898999899999889999999999982-------7997288447885----------3202
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCC---CEE
Q ss_conf 99999986079976999636277302666554335888876531246604899744899999730011132023---111
Q gi|254780877|r 260 KSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRF---QSL 336 (853)
Q Consensus 260 ~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRF---q~i 336 (853)
..+++.+... -.+.||++|.+.|....+-+ .=|++--...+|.--++.+..+--.-....+| |..|+ ..+
T Consensus 85 ~~~l~~le~~---~ll~iDDid~i~g~~~~e~a--LFhL~N~~~~~~~~ll~ts~~~P~~l~~~l~D--L~SRL~~~~~~ 157 (233)
T PRK08727 85 RDALEALEGR---SLVALDGVDSIAGQREDEVA--LFDFHNRARAAGITLLYTARQMPDGLALVLPD--LRSRLSQCIRI 157 (233)
T ss_pred HHHHHHHCCC---CEEEEECCHHCCCCHHHHHH--HHHHHHHHHHCCCEEEEECCCCHHHHCCCHHH--HHHHHHCCCEE
T ss_conf 5677531038---97898550112698279999--99999999861983899779895662310021--99999669228
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 11577767899999997898654149610158999998633320245767477899999999
Q gi|254780877|r 337 LVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 337 ~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
.+.+|+.++-..+|+.... ..|+.++++++.+.++-..|=+.. =-+.+|-||.+.
T Consensus 158 ~l~~~dD~~~~~iL~~~a~----~rgl~l~~~V~~Yll~r~~R~~~~---l~~~l~~LD~~S 212 (233)
T PRK08727 158 GLPVLDDVARAAVLRDRAQ----RRGLALDEAAIDWLLTHGERELAG---LVALLDRLDRES 212 (233)
T ss_pred EECCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH
T ss_conf 8578897999999999999----869999989999999856889999---999999999999
No 218
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=98.36 E-value=2.2e-05 Score=62.71 Aligned_cols=219 Identities=26% Similarity=0.377 Sum_probs=164.3
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHCCCCCCCHH
Q ss_conf 45948999999999987410123656651289872678616889999999872377---653002244774034532013
Q gi|254780877|r 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD---ENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~---~~~lir~dMsey~e~~~vs~L 646 (853)
+|||..|--.|.+.+.+ +..-+||+ |.+|=-|+||=-.|..|.= | | +.++|.+||+-.+|.--=|=|
T Consensus 1 liG~S~aFL~vLeqvS~----lA~l~rPV---LiiGERGTGKELiA~RLHy-L--S~RW~~Plv~LNCAALse~LldSEL 70 (349)
T TIGR02974 1 LIGESNAFLEVLEQVSR----LAPLDRPV---LIIGERGTGKELIAARLHY-L--SKRWQQPLVKLNCAALSENLLDSEL 70 (349)
T ss_pred CCCCCHHHHHHHHHHHH----CCCCCCCE---EEEECCCCCHHHHHHHHHH-H--HHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 98872789999998751----04678866---8861467468999988533-2--4655488626610127825555665
Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCC
Q ss_conf 047711203566774211322156-------4102202144149899999999840457887999778303315595485
Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSN 719 (853)
Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN 719 (853)
+| || .|--|.|-++|+ -.=+.||||=.|...|+.-||-|.+.|.+-==.|...==.|+=||+-||
T Consensus 71 FG-------HE-aGAFTGA~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN 142 (349)
T TIGR02974 71 FG-------HE-AGAFTGAKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATN 142 (349)
T ss_pred HH-------HC-CCCHHHHCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCC
T ss_conf 31-------00-10013030468898544368873888871421676786612010130330178604773513676214
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC-CEEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 1268764032679999999998628857726668-1586288998--999999999999999999857989999889999
Q gi|254780877|r 720 LGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD-EIILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQVID 796 (853)
Q Consensus 720 ~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid-~iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~ 796 (853)
. + .-.=+-.+.||-+||+|+- +||..-||-. +|+.-+++.+=-.+..-| ......-||+.|..
T Consensus 143 ~-------D------LP~lA~~G~FRaDLLDRLAFDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL-~~~~F~GFt~~A~~ 208 (349)
T TIGR02974 143 A-------D------LPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-GLPLFPGFTPQARE 208 (349)
T ss_pred C-------C------HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHH
T ss_conf 1-------3------69898658984014554456550797888872327899999999999970-78655114389999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99970898220621579999987334
Q gi|254780877|r 797 WLSCRGYDPSYGARPLKRVIQRYIQN 822 (853)
Q Consensus 797 ~l~~~~~~~~~GaR~l~r~i~~~i~~ 822 (853)
.|.+ |+=---.|.||.+||+.|..
T Consensus 209 ~L~~--Y~WPGNvRELkNvvERsVyR 232 (349)
T TIGR02974 209 QLLE--YHWPGNVRELKNVVERSVYR 232 (349)
T ss_pred HHHC--CCCCCCCHHHHHHHHHHHHH
T ss_conf 9970--68888521244467666530
No 219
>KOG0737 consensus
Probab=98.36 E-value=3.8e-06 Score=68.94 Aligned_cols=140 Identities=24% Similarity=0.434 Sum_probs=105.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 77866895288740777999999987348998444574378873135421745420245458999999860799769996
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFI 277 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfi 277 (853)
--.+++|-|+||.|||-++..+|.+ .+...+.++++.+.. |.=||=|.-++.+.--..+- .+.|+||
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake----------aga~fInv~~s~lt~--KWfgE~eKlv~AvFslAsKl-~P~iIFI 192 (386)
T KOG0737 126 PPKGILLYGPPGTGKTMLAKAIAKE----------AGANFINVSVSNLTS--KWFGEAQKLVKAVFSLASKL-QPSIIFI 192 (386)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHH----------CCCCCCEEECCCCCH--HHHHHHHHHHHHHHHHHHHC-CCCEEEH
T ss_conf 8643051189982188999999987----------279710001365532--66777888999998206534-8615656
Q ss_pred CCHHHHCCCCCCCCCCCHHHHHHHH--------HCCCC--EEEEEEECHHHHHHHHHCCHHHHHCCC-EEECCCCCHHHH
Q ss_conf 3627730266655433588887653--------12466--048997448999997300111320231-111157776789
Q gi|254780877|r 278 DELHVLVGAGKTDGAMDASNLLKPS--------LARGE--LHCIGATTLDEYRKYIEKDPALARRFQ-SLLVGEPTVTDT 346 (853)
Q Consensus 278 de~h~~~gaG~~~g~~Daan~LKP~--------LarG~--l~~IgaTT~~Eyrk~iEkD~Al~RRFq-~i~V~Eps~~~t 346 (853)
||+-+.+|.- +.+--.|--++|-. .+.+. +-+.|||-- -++=|.|.-|||- ...|.=|+.+.-
T Consensus 193 DEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR-----P~DlDeAiiRR~p~rf~V~lP~~~qR 266 (386)
T KOG0737 193 DEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR-----PFDLDEAIIRRLPRRFHVGLPDAEQR 266 (386)
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-----CCCHHHHHHHHCCCEEEECCCCHHHH
T ss_conf 6588898640-46427999999999999861646788715999707999-----84378999984764365379844449
Q ss_pred HHHHHHHHHH
Q ss_conf 9999997898
Q gi|254780877|r 347 ISILRGLKER 356 (853)
Q Consensus 347 ~~iL~gl~~~ 356 (853)
-.||+-+...
T Consensus 267 ~kILkviLk~ 276 (386)
T KOG0737 267 RKILKVILKK 276 (386)
T ss_pred HHHHHHHHCC
T ss_conf 9999999424
No 220
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=0.00019 Score=55.14 Aligned_cols=45 Identities=13% Similarity=-0.020 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHH----CCCCHHHHH-HHCCCCHHHHHHHHHHHHCC
Q ss_conf 9870259998766872----775178899-97599989999999987377
Q gi|254780877|r 102 GDSFVTAEKFLLAMVM----ETGGIGESL-KKCGLKFSRLEESIKKLRKG 146 (853)
Q Consensus 102 g~~~I~~ehLLlAIl~----e~~s~a~iL-~~~gi~~~~l~e~i~~~~~~ 146 (853)
-++.|+.+|++-++-. .+-.++++| -.-|+-+..+-..+.+..+-
T Consensus 15 f~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rG~GKtt~ari~ak~lnc 64 (643)
T PRK07994 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (643)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 66653879999999999982986634874589988888999999999679
No 221
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.35 E-value=2e-05 Score=63.04 Aligned_cols=174 Identities=19% Similarity=0.400 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCC------EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC-----C
Q ss_conf 3335789999999633677786------6895288740777999999987348998444574378873135421-----7
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNN------PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA-----G 248 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n------~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-----g 248 (853)
-.|=++-=+|+++-|+=+..++ .||||+||||||+|...+|.-+ |+..+.+.+|.+-- |
T Consensus 324 HyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al----------~r~f~rislGGv~DeaeirG 393 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
T ss_conf 30657799999999999986246778779964699877246999999985----------89869980688788888256
Q ss_pred --CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHH----HHHHHH---------HC----CCCEE
Q ss_conf --454202454589999998607997699963627730266655433588----887653---------12----46604
Q gi|254780877|r 249 --AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDAS----NLLKPS---------LA----RGELH 309 (853)
Q Consensus 249 --~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daa----n~LKP~---------La----rG~l~ 309 (853)
-.|-|-.-.|+-.-|..+...+ +| ..+|||.-+ |.+ .. .|-| .+|-|. |. =...-
T Consensus 394 HrrTYvgampGrii~~l~~a~~~n-Pv-~llDEiDK~-~~~-~~--Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~ 467 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKN-PL-FLLDEIDKM-SSD-MR--GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCC-CE-EEEHHHHHH-CCC-CC--CCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEE
T ss_conf 433434436838999999748988-56-650035552-245-58--9988999984597655640003220464522258
Q ss_pred EEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHH-HHHHHHHHHCC-----CCCCHHHHHHHHH
Q ss_conf 899744899999730011132023111115777678999999-97898654149-----6101589999986
Q gi|254780877|r 310 CIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILR-GLKERYEQHHK-----VRISDSALVSAAV 375 (853)
Q Consensus 310 ~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~-gl~~~yE~~H~-----V~i~d~al~~av~ 375 (853)
+|+ |-.. ..--++|-.|.+.|.+.-=+.+|-+.|-+ -+.|+--+.|| +.|+|+||...++
T Consensus 468 Fi~--TaN~----~~ip~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~ 533 (784)
T PRK10787 468 FVA--TSNS----MNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred EEE--ECCC----CCCCHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 997--3276----77876776312155411676788999999745399999828996567439999999875
No 222
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=98.34 E-value=1e-06 Score=73.62 Aligned_cols=219 Identities=22% Similarity=0.324 Sum_probs=119.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
+-|+||++|-+++.-++ ||=. .+||+||+|+|||-+|+.+.-.|=. +.--|--|..+|..|.
T Consensus 194 ~dv~GQ~~akRAleIAa----AGGH-------Nlll~GPPGsGKTmla~r~~giLP~-------L~~~EalE~~~v~S~~ 255 (505)
T TIGR00368 194 KDVKGQQHAKRALEIAA----AGGH-------NLLLLGPPGSGKTMLASRLQGILPP-------LTNEEALETARVLSLV 255 (505)
T ss_pred CCCCCHHHCCHHHHHHH----HCCC-------CEEEECCCCCCHHHHHHHHHCCCCC-------CCCHHHHHHHHHHHHH
T ss_conf 22545101102677753----1356-------4376782496268999875105786-------4512666678888888
Q ss_pred C---------------------CCCHHCCCC---CCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCC
Q ss_conf 4---------------------771120356---6774211322156410220214414989999999984045788799
Q gi|254780877|r 648 G---------------------SPPGYVGYE---EGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQ 703 (853)
Q Consensus 648 G---------------------appGYvG~~---~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~ 703 (853)
| |-||-||=+ ..|...=| -..|++|||.-==-..|++.|=|=+++|.++=
T Consensus 256 ~~l~~~~~~~rQRPFR~PHHsAS~~~lvGGG~~P~PGEiSLA----hnGvLFLDEl~EF~r~vL~~LR~PlEdg~i~i-- 329 (505)
T TIGR00368 256 GKLIDRKQWKRQRPFRSPHHSASKPALVGGGSIPKPGEISLA----HNGVLFLDELPEFKRKVLDALREPLEDGSISI-- 329 (505)
T ss_pred HHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHH----CCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEE--
T ss_conf 757652301106867786500256664058752228512020----05410432220446789987178742670688--
Q ss_pred CCEEECCCCEEE-ECCCHH---HHHHH------C---CHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCC-HHHHHH-
Q ss_conf 977830331559-548512---68764------0---32679999999998628857726668158628899-899999-
Q gi|254780877|r 704 GRTVDFRNTLII-MTSNLG---AEYLI------E---DGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLR-KEDMAK- 768 (853)
Q Consensus 704 G~~v~f~n~iii-~TsN~G---~~~~~------~---~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~-~~~~~~- 768 (853)
|=.++-|. +=.|.- |.... + +.....++.+.=+++ ++-.||+|||--|.-+-+. ...|..
T Consensus 330 ----SRa~~ki~kyPA~FqL~aAmNpcPcG~~~~~~~~c~cSp~q~~~Yl~k-Lsgp~LDRiDl~v~v~~~~n~~~L~~t 404 (505)
T TIGR00368 330 ----SRAKAKIFKYPARFQLVAAMNPCPCGHYGGKITHCRCSPQQISRYLNK-LSGPFLDRIDLSVEVPLLPNPGLLSET 404 (505)
T ss_pred ----EECCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCHHHCHHCCEECCCCCCCCCHHHHC
T ss_conf ----632201000872455675617887767778744465897899999874-271120001140013788874134424
Q ss_pred -------------HHHHHHHHHHHHHHH-CCCEE-------------EECHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf -------------999999999999985-79899-------------9988999999970898220621579999
Q gi|254780877|r 769 -------------IVRIQLGRVLSLIKE-RNISM-------------DFDDQVIDWLSCRGYDPSYGARPLKRVI 816 (853)
Q Consensus 769 -------------i~~~~l~~l~~~l~~-~~i~l-------------~~~~~~~~~l~~~~~~~~~GaR~l~r~i 816 (853)
|+...=-.+ .|... -+|.+ ++++....+|...=--...-+|...|++
T Consensus 405 ~~~GESS~~vkqrv~kaR~~q~-~R~~k~A~I~~Na~L~s~~i~~FC~L~~~~~~~Le~~L~kLglS~RA~~riL 478 (505)
T TIGR00368 405 GVRGESSAEVKQRVLKAREIQI-KRYEKFAKINLNAELNSDEIEQFCKLDEKDANLLEGALNKLGLSVRATHRIL 478 (505)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 7899526789999999999999-7303545503373358245654057156889999999987085166887688
No 223
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.31 E-value=0.0002 Score=54.99 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHH----CCCCHHHHH-HHCCCCHHHHHHHHHHHHC
Q ss_conf 9870259998766872----775178899-9759998999999998737
Q gi|254780877|r 102 GDSFVTAEKFLLAMVM----ETGGIGESL-KKCGLKFSRLEESIKKLRK 145 (853)
Q Consensus 102 g~~~I~~ehLLlAIl~----e~~s~a~iL-~~~gi~~~~l~e~i~~~~~ 145 (853)
-.+.|+.+|++-++.. .+-.++++| ..-|+-+..+-..+.+-.+
T Consensus 15 f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~ln 63 (705)
T PRK05648 15 FREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLN 63 (705)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7663281999999999997098630465007898889899999999867
No 224
>pfam00493 MCM MCM2/3/5 family.
Probab=98.30 E-value=0.00036 Score=52.84 Aligned_cols=176 Identities=20% Similarity=0.290 Sum_probs=91.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH----HHCCC---CCCCHHHHHHHHHHHHHHHC
Q ss_conf 777866895288740777999999987348998444574378873135----42174---54202454589999998607
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA----LIAGA---KFRGEFEERLKSLLCEIRSE 269 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~----l~ag~---~~rg~~e~r~~~i~~~~~~~ 269 (853)
|..-|++|||+||+|||.+....++ +... -+|.-..++ |.|.. ++-|+|-=+--.++ -+
T Consensus 55 Rg~ihiLLvGdPG~gKSqlLk~~~~-~~pr---------~~~tsg~~ss~~GLTa~~~~d~~~~~~~leaGalv----lA 120 (327)
T pfam00493 55 RGDINVLLVGDPGTAKSQLLKYVAK-LAPR---------AVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGALV----LA 120 (327)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH-HCCC---------CEEECCCCCCCCCCEEEEEEECCCCCEEEECCCEE----EC
T ss_conf 3651189846998156099999998-6887---------08831776656776158998068883698368477----55
Q ss_pred CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCE---------------EEEEEECHHH--H------HHHHHCC
Q ss_conf 997699963627730266655433588887653124660---------------4899744899--9------9973001
Q gi|254780877|r 270 DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGEL---------------HCIGATTLDE--Y------RKYIEKD 326 (853)
Q Consensus 270 ~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l---------------~~IgaTT~~E--y------rk~iEkD 326 (853)
++ =|++|||+.-+- .-|-+-|+. +|..+.+ .+|+|.-|.+ | ...|.=.
T Consensus 121 d~-Gv~cIDEfdk~~-------~~d~saL~E-AMEqqtVsIaKaGi~~tL~ar~sVlAaaNP~~g~yd~~~~~~~ni~Lp 191 (327)
T pfam00493 121 DG-GVCCIDEFDKMN-------EEDRVAIHE-AMEQQTISIAKAGIVATLNARCSVLAAANPIFGRYDPKKSVAENINLP 191 (327)
T ss_pred CC-CEEEEECCCCCC-------HHHHHHHHH-HHHHCEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCC
T ss_conf 89-827850055588-------767999999-998681776338538972587179985277677378888988855897
Q ss_pred HHHHHCCCEE--ECCCCCHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 1132023111--1157776789999999789865414------96101589999986333202457674778999999
Q gi|254780877|r 327 PALARRFQSL--LVGEPTVTDTISILRGLKERYEQHH------KVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 (853)
Q Consensus 327 ~Al~RRFq~i--~V~Eps~~~t~~iL~gl~~~yE~~H------~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDe 396 (853)
+++-.||.-| ....|+.+.-..|.+.+...+.... ...++.+-+..-+.++.+++.- .+++.|.+.|=.
T Consensus 192 ~~lLsRFDLif~l~D~~~~~~D~~ia~~i~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P-~ls~ea~~~i~~ 268 (327)
T pfam00493 192 PPLLSRFDLIFVLLDKPDEEKDEELAKHIVDLHRHGEEEEIETEDYVDPELLRKYIAYARENIFP-KLSDEAREKLVN 268 (327)
T ss_pred HHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
T ss_conf 67745010798840689868899999999998744688655568879999999999999852788-779899999999
No 225
>PRK06893 DNA replication initiation factor; Validated
Probab=98.30 E-value=0.00017 Score=55.53 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf 3335789999999633677786-689528874077799999998734899844457437887313542174542024545
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEER 258 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r 258 (853)
+.|...+.-..++-.....+++ ..+.|++|+|||-+.+++........ +....+++.... .-
T Consensus 19 ~~~~n~~~~~~l~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~-------~~~~yi~~~~~~----------~~ 81 (229)
T PRK06893 19 YSDNNLLLLDSLRKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ-------RTAIYIPLSKSQ----------YF 81 (229)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-------CCEEEEEHHHHH----------HC
T ss_conf 4687499999999755024698799989999988999999999999718-------985999737756----------40
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE-EEEE-CHHHHHHHHHCCHHHHHCC---
Q ss_conf 8999999860799769996362773026665543358888765312466048-9974-4899999730011132023---
Q gi|254780877|r 259 LKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHC-IGAT-TLDEYRKYIEKDPALARRF--- 333 (853)
Q Consensus 259 ~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~-IgaT-T~~Eyrk~iEkD~Al~RRF--- 333 (853)
-..+++.+... + .+.||++|.+.|....+-. .=|++--...+|.-.+ +.+. .|.+.. ...+| |..||
T Consensus 82 ~~~~l~~l~~~--d-~l~iDDi~~i~g~~~~e~~--lF~l~N~l~~~~~~~ll~ss~~~p~~l~-~~l~D--L~SRl~~~ 153 (229)
T PRK06893 82 SPAVLENLEQQ--D-LVCLDDLQAVIGNEEWELA--IFDLFNRIKESGKTLLLISANQSPHALQ-IKLPD--LASRLTWG 153 (229)
T ss_pred CHHHHHHHHHC--C-EEEEECHHHHCCCHHHHHH--HHHHHHHHHHCCCCEEEEECCCCHHHHC-CHHHH--HHHHHHCC
T ss_conf 69999876547--9-7999672342488389999--9999999997599179985798833221-00267--99999688
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 11111577767899999997898654149610158999998633320245767477899999999
Q gi|254780877|r 334 QSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 334 q~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
..+.+++|+.++-..||+.... -.|+.++++++.+.++-..|=+.. =..+++-||.++
T Consensus 154 ~~~~i~~~dd~~~~~iL~~~a~----~rgl~l~~~v~~yl~~r~~R~~~~---l~~~l~~Ld~~s 211 (229)
T PRK06893 154 EIYQLNDLTDEQKIEVLQRNAY----QRGIELSDETANFLLKRLDRDMHT---LFDALDLLDKAS 211 (229)
T ss_pred EEEEECCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHCCCHHH---HHHHHHHHHHHH
T ss_conf 3699667775799999999999----649999989999999983478999---999999999999
No 226
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.8e-05 Score=59.98 Aligned_cols=158 Identities=24% Similarity=0.399 Sum_probs=102.5
Q ss_pred CCCCCCCHHHHHHHHHHHHC------------CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 85333335789999999633------------677786689528874077799999998734899844457437887313
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLS------------RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~------------r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
+.+-|.|+|+..+.+.+++. .|--..++|+|+||+|||-++...|- +-+|| .|+..-+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAg---EA~VP-------Ff~iSGS 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAG---EAGVP-------FFSISGS 217 (596)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHC---CCCCC-------CEECCCH
T ss_conf 7566418679999999999986385566752353456526855999872789999845---46898-------3530344
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCC--CCCCCC-----HHHHHHHH---HCCCCEEEEEE
Q ss_conf 542174542024545899999986079976999636277302666--554335-----88887653---12466048997
Q gi|254780877|r 244 ALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGK--TDGAMD-----ASNLLKPS---LARGELHCIGA 313 (853)
Q Consensus 244 ~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~--~~g~~D-----aan~LKP~---LarG~l~~Iga 313 (853)
..|- .|.|==..|++.+....++. .+.|+|||||-.+-...+ ..|+-| ...+|--. -++..+-+|+|
T Consensus 218 ~FVe--mfVGvGAsRVRdLF~qAkk~-aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaa 294 (596)
T COG0465 218 DFVE--MFVGVGASRVRDLFEQAKKN-APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAA 294 (596)
T ss_pred HHHH--HHCCCCCHHHHHHHHHHHCC-CCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 4644--31478838889999985515-99669876343314545778899806999999888852015788875488526
Q ss_pred ECHHHHHHHHHCCHHHH---HCCCEEECCCCCHHHHHHHHH
Q ss_conf 44899999730011132---023111115777678999999
Q gi|254780877|r 314 TTLDEYRKYIEKDPALA---RRFQSLLVGEPTVTDTISILR 351 (853)
Q Consensus 314 TT~~Eyrk~iEkD~Al~---RRFq~i~V~Eps~~~t~~iL~ 351 (853)
|-..+- -|+||- |++..|.|+-|+...--.||+
T Consensus 295 TNRpdV-----lD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk 330 (596)
T COG0465 295 TNRPDV-----LDPALLRPGRFDRQILVELPDIKGREQILK 330 (596)
T ss_pred CCCCCC-----CHHHHCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 787433-----317652887766255447851565788878
No 227
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.4e-05 Score=62.41 Aligned_cols=175 Identities=21% Similarity=0.369 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHC---CCCC---CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC-----C
Q ss_conf 3335789999999633---6777---866895288740777999999987348998444574378873135421-----7
Q gi|254780877|r 180 VIGRDDEMRRAIQVLS---RRTK---NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA-----G 248 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~---r~~k---~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-----g 248 (853)
=.|=++-=+|+++-|+ |+.+ .=.||||+||||||+|....|.-+ |+..+-+.+|.+=- |
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
T ss_conf 56711689999999999986146788579997899887011899999995----------89779995476542777535
Q ss_pred --CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCC-HH---HHHHHH---------HC-C---CCEE
Q ss_conf --4542024545899999986079976999636277302666554335-88---887653---------12-4---6604
Q gi|254780877|r 249 --AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMD-AS---NLLKPS---------LA-R---GELH 309 (853)
Q Consensus 249 --~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~D-aa---n~LKP~---------La-r---G~l~ 309 (853)
-.|-|-.-.|+-.-|+.+...+ +++ .+|||.-+- ++--.| || .+|-|- |. . .+.-
T Consensus 395 HRRTYIGaMPGrIiQ~mkka~~~N-Pv~-LLDEIDKm~----ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKN-PVF-LLDEIDKMG----SSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCC-CEE-EEECHHHCC----CCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEE
T ss_conf 531233568728999999867768-747-864033316----77778868888862697656761222016766443258
Q ss_pred EEEEECHHHHHHHHHC-CHHHHHCCCEEECCCCCHHHHHHHHH-HHHHHHHHHCC-----CCCCHHHHHHHHHH
Q ss_conf 8997448999997300-11132023111115777678999999-97898654149-----61015899999863
Q gi|254780877|r 310 CIGATTLDEYRKYIEK-DPALARRFQSLLVGEPTVTDTISILR-GLKERYEQHHK-----VRISDSALVSAAVL 376 (853)
Q Consensus 310 ~IgaTT~~Eyrk~iEk-D~Al~RRFq~i~V~Eps~~~t~~iL~-gl~~~yE~~H~-----V~i~d~al~~av~l 376 (853)
+| +| .. +++. -++|-.|-+.|.+.-=+.+|-++|-+ .+-|+-=+-|| +.|+|+||...++.
T Consensus 469 Fi--aT-AN---sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~ 536 (782)
T COG0466 469 FI--AT-AN---SLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY 536 (782)
T ss_pred EE--EE-CC---CCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHH
T ss_conf 88--60-37---51329867843030564268886999999998445689997599823355658999999998
No 228
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=0.00039 Score=52.56 Aligned_cols=45 Identities=11% Similarity=-0.008 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHH--C--CCCHHHHH-HHCCCCHHHHHHHHHHHHCC
Q ss_conf 9870259998766872--7--75178899-97599989999999987377
Q gi|254780877|r 102 GDSFVTAEKFLLAMVM--E--TGGIGESL-KKCGLKFSRLEESIKKLRKG 146 (853)
Q Consensus 102 g~~~I~~ehLLlAIl~--e--~~s~a~iL-~~~gi~~~~l~e~i~~~~~~ 146 (853)
-.+.|+.+|++-++.. + +-.++++| ..-|+-+..+-..+.+-.+-
T Consensus 15 f~~~~gq~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc 64 (663)
T PRK08770 15 FAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 (663)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 64522859999999999970997404762279988888999999998678
No 229
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.26 E-value=3.2e-05 Score=61.42 Aligned_cols=148 Identities=20% Similarity=0.301 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE----EHHHHHCCCCC-CCHHH--
Q ss_conf 789999999633677786689528874077799999998734899844457437887----31354217454-20245--
Q gi|254780877|r 184 DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL----DMGALIAGAKF-RGEFE-- 256 (853)
Q Consensus 184 e~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l----d~~~l~ag~~~-rg~~e-- 256 (853)
+.-|+.. +++-++|.|+||-|.||+|||-++.-||.-+..++.|... +++.. .-...+-|-+- .+.|+
T Consensus 181 ~~~i~~~--~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv---~~VqfhpsysYEDfi~Gyrp~~~gf~~~ 255 (459)
T PRK11331 181 ETTIETI--LKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRV---NMVQFHQSYSYEDFIQGYRPNGVGFRRK 255 (459)
T ss_pred CHHHHHH--HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCE---EEEEECCCCCHHHHHCCCCCCCCCCEEC
T ss_conf 1359999--9985458827965899988789999999997078877846---8998358866178764605688861326
Q ss_pred -HHHHHHHHHHHHC-CCCEEEEECCHH------------HHCCCCCCCCCCCHHHHHHHHHC--------CCCEEEEEEE
Q ss_conf -4589999998607-997699963627------------73026665543358888765312--------4660489974
Q gi|254780877|r 257 -ERLKSLLCEIRSE-DGEIILFIDELH------------VLVGAGKTDGAMDASNLLKPSLA--------RGELHCIGAT 314 (853)
Q Consensus 257 -~r~~~i~~~~~~~-~~~~ilfide~h------------~~~gaG~~~g~~Daan~LKP~La--------rG~l~~IgaT 314 (853)
..+..+++.+.+. +.+-+++||||. +++.+...... -.+--|+.. --.+-+||+.
T Consensus 256 ~G~f~~~~~~A~~~p~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~---~~~~l~ys~~~~~~f~vP~Nl~iigtm 332 (459)
T PRK11331 256 DGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGEN---WSVPLTYSENDEERFYVPENVYIIGLM 332 (459)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCC---CEEEEECCCCCCCEECCCCCEEEEEEC
T ss_conf 83699999999849898769998432033889999999999641256765---225630036888533468865999850
Q ss_pred CHHHHHHHHHCCHHHHHCCCEEECCC
Q ss_conf 48999997300111320231111157
Q gi|254780877|r 315 TLDEYRKYIEKDPALARRFQSLLVGE 340 (853)
Q Consensus 315 T~~Eyrk~iEkD~Al~RRFq~i~V~E 340 (853)
-.+. |.+---|.||-|||.-+.+.+
T Consensus 333 Ntad-rs~~~~d~alrRrf~f~~~~p 357 (459)
T PRK11331 333 NTAD-RSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred CCCC-HHHHHHHHHHHHHHCCEECCC
T ss_conf 3341-068878999986502121589
No 230
>KOG0989 consensus
Probab=98.26 E-value=6e-05 Score=59.14 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=143.0
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH
Q ss_conf 43569987298533333578999999963367778668952887407779999999873489984445743788731354
Q gi|254780877|r 166 RDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL 245 (853)
Q Consensus 166 ~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l 245 (853)
.-.|++.+-..+|-++|-+..+.-+...+.||.-.|-++-|+||.|||+-+..+|..+.- +.+.-+++.+++.+-.
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSde 99 (346)
T KOG0989 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDE 99 (346)
T ss_pred CCHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC----CCCCCCCHHHHCCCCC
T ss_conf 553787478737765015999999999986068860786689998676899999998557----4235554243136600
Q ss_pred HCCCCCCCHHHHHHHHHHHHHH-----HCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEEECHHH
Q ss_conf 2174542024545899999986-----07997699963627730266655433588887653124--6604899744899
Q gi|254780877|r 246 IAGAKFRGEFEERLKSLLCEIR-----SEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GELHCIGATTLDE 318 (853)
Q Consensus 246 ~ag~~~rg~~e~r~~~i~~~~~-----~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l~~IgaTT~~E 318 (853)
.|-+.-.+=-..+-.+..-.. ..+.--|+.+||.|++- -||-+-|.-.+.+ ..-++|=.|+.=+
T Consensus 100 -rGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------sdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989 100 -RGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------SDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred -CCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECHHHHH--------HHHHHHHHHHHHCCCCCEEEEEECCCHH
T ss_conf -1431006652379987502556567889863289974164530--------9999999999862546659999738856
Q ss_pred HHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9997300111320231111157776789999999789865414961015899999863332024576747789999999
Q gi|254780877|r 319 YRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEA 397 (853)
Q Consensus 319 yrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA 397 (853)
+.| ..+..|-|+..-+....+..+..|+.+.+. .||.|+++|+...+..|.-=+. +||..|+.+
T Consensus 171 --rii---~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdLR------~Ait~Lqsl 234 (346)
T KOG0989 171 --RII---RPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDLR------RAITTLQSL 234 (346)
T ss_pred --HCC---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHH------HHHHHHHHH
T ss_conf --477---287746777128876447899999999888----5899787899999997387289------999999986
No 231
>KOG0737 consensus
Probab=98.25 E-value=8e-06 Score=66.30 Aligned_cols=165 Identities=23% Similarity=0.398 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 00000123554776745948999999999987410123656651289872678616889999999872377653002244
Q gi|254780877|r 555 DREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDM 634 (853)
Q Consensus 555 E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dM 634 (853)
+--.|-...+.|++.|+=+-.-.+..+ +.+|.. .|.|++|| ||+|.|||-+||++|+.. +.++|-+.|
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~------~g~Ll~--p~kGiLL~-GPpG~GKTmlAKA~Akea---ga~fInv~~ 160 (386)
T KOG0737 93 DIGGLEEVKDALQELVILPLRRPELFA------KGKLLR--PPKGILLY-GPPGTGKTMLAKAIAKEA---GANFINVSV 160 (386)
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHC------CCCCCC--CCCCCEEC-CCCCCHHHHHHHHHHHHC---CCCCCEEEC
T ss_conf 133528999999987752012466641------453146--86430511-899821889999999872---797100013
Q ss_pred HHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHH-----HCCCCCEEEEHHHHHC-----------CHHHHHHHHHHHHCCE
Q ss_conf 77403453201304771120356677421132-----2156410220214414-----------9899999999840457
Q gi|254780877|r 635 SEYMEKHSVSRLIGSPPGYVGYEEGGALTEAV-----RRHPYQVVLFDEIEKA-----------HSDVHNILLQVLDDGR 698 (853)
Q Consensus 635 sey~e~~~vs~LiGappGYvG~~~gg~Lte~v-----r~~P~sVil~DEiEKa-----------h~~v~~~llqild~G~ 698 (853)
|.-+++.. | |+-.|+.+| +-+| |+|..|||+-- ..-.-+=|+-.+ ||-
T Consensus 161 s~lt~KWf-----g---------E~eKlv~AvFslAsKl~P-~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~W-DGl 224 (386)
T KOG0737 161 SNLTSKWF-----G---------EAQKLVKAVFSLASKLQP-SIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALW-DGL 224 (386)
T ss_pred CCCCHHHH-----H---------HHHHHHHHHHHHHHHCCC-CEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCC
T ss_conf 65532667-----7---------788899999820653486-1565665888986404642799999999999986-164
Q ss_pred EECCCCCEEECCCCEEEE-CCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 887999778303315595-4851268764032679999999998628857726668158628899899999999999
Q gi|254780877|r 699 LTDSQGRTVDFRNTLIIM-TSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 699 ltd~~G~~v~f~n~iii~-TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
.|+..-| +++| -+| .+....++ .+-|+...+.-+--+.....+|+...|
T Consensus 225 ~s~~~~r-------VlVlgATN--------RP~DlDeA------------iiRR~p~rf~V~lP~~~qR~kILkviL 274 (386)
T KOG0737 225 SSKDSER-------VLVLGATN--------RPFDLDEA------------IIRRLPRRFHVGLPDAEQRRKILKVIL 274 (386)
T ss_pred CCCCCCE-------EEEEECCC--------CCCCHHHH------------HHHHCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 6788715-------99970799--------98437899------------998476436537984444999999994
No 232
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.24 E-value=8.9e-05 Score=57.76 Aligned_cols=45 Identities=24% Similarity=0.487 Sum_probs=32.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCC-HHHCCCEEEEEEHHHH
Q ss_conf 866895288740777999999987348998-4445743788731354
Q gi|254780877|r 200 NNPVLIGDPGVGKTAIIEGLASRIINGDIP-ESLKGKRLMALDMGAL 245 (853)
Q Consensus 200 ~n~~lvGe~GvGKtaive~la~~i~~~~vp-~~l~~~~i~~ld~~~l 245 (853)
...+|.|+||.|||||+-|+|+-+-.. || -.+.+..|||+.+..-
T Consensus 51 raiLlaGppGTGKTAlA~aiakeLG~~-vPF~~i~gSEvyS~E~kKT 96 (395)
T pfam06068 51 RAVLIAGPPGTGKTALAIAISKELGED-TPFCPISGSEVYSLEMKKT 96 (395)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEHHEEECCCCCHH
T ss_conf 389987799988899999999974879-9734500111212565488
No 233
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=98.24 E-value=5.6e-05 Score=59.39 Aligned_cols=72 Identities=38% Similarity=0.669 Sum_probs=30.6
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHH------CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 5477674594899999999998741------0123656651289872678616889999999872377653002244774
Q gi|254780877|r 564 TEISKSVIGQSAAVESVSNALRRFR------AGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY 637 (853)
Q Consensus 564 ~~l~~~v~gq~~ai~~v~~~~~~~~------~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey 637 (853)
+.|.+.||||++|-++|+-|++-.. ..+++.--|- ..|++|||||||||+|+.||+.+ .-.|+..|-+-|
T Consensus 11 ~~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pk-NILmIGPTGvGKTeIARrLAkl~---~aPFvkveATk~ 86 (442)
T PRK05201 11 SELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (442)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCC
T ss_conf 98536010827766787778877787531662212334643-16887888866789999999984---898587521310
Q ss_pred CC
Q ss_conf 03
Q gi|254780877|r 638 ME 639 (853)
Q Consensus 638 ~e 639 (853)
+|
T Consensus 87 TE 88 (442)
T PRK05201 87 TE 88 (442)
T ss_pred CC
T ss_conf 00
No 234
>KOG1942 consensus
Probab=98.24 E-value=4.3e-05 Score=60.38 Aligned_cols=118 Identities=21% Similarity=0.378 Sum_probs=83.9
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCC
Q ss_conf 10220214414989999999984045788799977830331559548512687640326799999999986288577266
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNR 751 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnR 751 (853)
.|++.||+.--.-+.|..|-+.|+.-. .-++|+.||-|--.+....+-... .-.+|++|+|
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~i------------aPivifAsNrG~~~irGt~d~~sP-------hGip~dllDR 358 (456)
T KOG1942 298 GVLFIDEVHMLDIECFTYLHKALESPI------------APIVIFASNRGMCTIRGTEDILSP-------HGIPPDLLDR 358 (456)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHCCCC------------CCEEEEECCCCCEEECCCCCCCCC-------CCCCHHHHHH
T ss_conf 626863013242699999999862778------------756999627761022177678787-------8899778612
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 68158628899899999999999999999985798999988999999970898220621579999987334999
Q gi|254780877|r 752 LDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLA 825 (853)
Q Consensus 752 id~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la 825 (853)
+ -||.-.+++++++++|+.... +-=.+.+++++.++++.-|.+ ++||-.++ +.+|.+
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra---------~~E~l~~~e~a~~~l~~~gt~-----tsLRy~vq--Ll~p~~ 415 (456)
T KOG1942 359 L-LIIRTLPYDEEEIRQIIKIRA---------QVEGLQVEEEALDLLAEIGTS-----TSLRYAVQ--LLTPAS 415 (456)
T ss_pred E-EEEEECCCCHHHHHHHHHHHH---------HHHCCEECHHHHHHHHHHCCC-----HHHHHHHH--HCCHHH
T ss_conf 6-678603699899999999987---------651423228899998760541-----45788988--537888
No 235
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.24 E-value=0.00011 Score=57.02 Aligned_cols=219 Identities=19% Similarity=0.310 Sum_probs=144.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
+.++++...+..+...-++. .--+.| +|..|-||+||--+||+---.=--..+.++-+|+.-.-|..+-|-|+
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~----AmlDAP---LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElF 276 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKL----AMLDAP---LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELF 276 (511)
T ss_pred HHHHHCCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 77873039999999999865----403787---68744888618899998744384558973676447796667677773
Q ss_pred CCCCH---HCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHH
Q ss_conf 47711---203566774211322156410220214414989999999984045788799977830331559548512687
Q gi|254780877|r 648 GSPPG---YVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEY 724 (853)
Q Consensus 648 GappG---YvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~ 724 (853)
|-.|| |+|+=| .---.-||+|||--.+|..+--||..|.||+..--.+..--.-|.=+|+||..--..
T Consensus 277 G~apg~~gk~GffE---------~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~ 347 (511)
T COG3283 277 GHAPGDEGKKGFFE---------QANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVE 347 (511)
T ss_pred CCCCCCCCCCCHHH---------HCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHH
T ss_conf 56888777634634---------026974885003324998999999986277600037754578778999616666999
Q ss_pred HHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEE--CCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 640326799999999986288577266681586--28899--89999999999999999998579899998899999997
Q gi|254780877|r 725 LIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIIL--FEKLR--KEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSC 800 (853)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~--F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~ 800 (853)
=.-+..|+-.++-|+. |.. .-||- ..++.-.++..+.+....+.- -.-.+++....++..
T Consensus 348 -------------lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~--p~pkl~~~~~~~L~~ 411 (511)
T COG3283 348 -------------LVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGV--PRPKLAADLLTVLTR 411 (511)
T ss_pred -------------HHHCCCHHHHHHHHHH-EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHH
T ss_conf -------------9863725887887750-134238850006521068999999999997589--987668789999987
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 08982206215799999873
Q gi|254780877|r 801 RGYDPSYGARPLKRVIQRYI 820 (853)
Q Consensus 801 ~~~~~~~GaR~l~r~i~~~i 820 (853)
.++ .-..|.|...|.+-+
T Consensus 412 y~W--pGNVRqL~N~iyRA~ 429 (511)
T COG3283 412 YAW--PGNVRQLKNAIYRAL 429 (511)
T ss_pred CCC--CCCHHHHHHHHHHHH
T ss_conf 799--960999999999999
No 236
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.23 E-value=9.5e-06 Score=65.67 Aligned_cols=128 Identities=23% Similarity=0.252 Sum_probs=79.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCC------------CCHHHHHHHHHHHHH
Q ss_conf 78668952887407779999999873489984445743788731354217454------------202454589999998
Q gi|254780877|r 199 KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKF------------RGEFEERLKSLLCEI 266 (853)
Q Consensus 199 k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~------------rg~~e~r~~~i~~~~ 266 (853)
.++.+++|+||+|||+++..+|+.+.... ..++.++.......... -..-+..+..++..+
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC-------CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 97899999997029999999998726689-------96899875998988898765300011221051999999999999
Q ss_pred HHCCCCEEEEECCHHHHCCCCCCCCC--CCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEEC
Q ss_conf 60799769996362773026665543--3588887653124660489974489999973001113202311111
Q gi|254780877|r 267 RSEDGEIILFIDELHVLVGAGKTDGA--MDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLV 338 (853)
Q Consensus 267 ~~~~~~~ilfide~h~~~gaG~~~g~--~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V 338 (853)
+... ..|+||||++.+......... ........+......+.+|+++.+ ........+.+||.....
T Consensus 75 ~~~~-~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~----~~~~~~~~~~~~~~~~~~ 143 (148)
T smart00382 75 RKLK-PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND----EKDLGPALLRRRFDRRIV 143 (148)
T ss_pred HHCC-CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC----CCCCCHHHHCCCCCEEEE
T ss_conf 8449-98999827502147620799999999998517657899899995699----522498770744787999
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.23 E-value=7.8e-06 Score=66.39 Aligned_cols=145 Identities=20% Similarity=0.339 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHC
Q ss_conf 99999999998741012365665128987267861688999999987237765300224477403453201304771120
Q gi|254780877|r 575 AAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYV 654 (853)
Q Consensus 575 ~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYv 654 (853)
+.+..|....+..-..+.. +-.++||.||||||||.||-++|..|-......+-+...++.+.-.-.+.-
T Consensus 163 enm~~i~~~~~~fi~~F~~---~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~l~~~~~~------- 232 (330)
T PRK06835 163 ENMENILEKCLNFIKNFDK---NNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIENLREIRFN------- 232 (330)
T ss_pred HHHHHHHHHHHHHHHHCCC---CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCC-------
T ss_conf 9999999999999872478---888669889999988999999999999879949996299999999997545-------
Q ss_pred CCCCC--CCCCHHHHCCCCCEEEEHHH--HHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHH
Q ss_conf 35667--74211322156410220214--414989999999984045788799977830331559548512687640326
Q gi|254780877|r 655 GYEEG--GALTEAVRRHPYQVVLFDEI--EKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGD 730 (853)
Q Consensus 655 G~~~g--g~Lte~vr~~P~sVil~DEi--EKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~ 730 (853)
.++ -.+.+.+.. ..++.+|++ |...+-+...|++++++=.. ++.=.|.|||++-+.+.+.
T Consensus 233 --~~~~~~~~~~~l~~--~DLLIIDDLG~E~~t~~~~~~Lf~iIN~R~~----------~~k~tIITTNl~~~eL~~~-- 296 (330)
T PRK06835 233 --NDNDAPELEDLLIN--CDLLIIDDLGTESITEFSKTELFNLINKRLL----------MNKKMIISTNLSLEELLKT-- 296 (330)
T ss_pred --CCCCHHHHHHHHHH--CCEEEEECCCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHHH--
T ss_conf --76448999999961--8989972103455886899999999999986----------7999799889998999998--
Q ss_pred HHHHHHHHHHHHHCCH
Q ss_conf 7999999999862885
Q gi|254780877|r 731 SVHDKVMGIVRSAFKP 746 (853)
Q Consensus 731 ~~~~~~~~~l~~~f~p 746 (853)
..+.+...+...|.|
T Consensus 297 -y~eRi~SRi~~~~~~ 311 (330)
T PRK06835 297 -YSERIASRLLGNFTL 311 (330)
T ss_pred -HHHHHHHHHHHCCEE
T ss_conf -748999999818549
No 238
>PRK08903 hypothetical protein; Validated
Probab=98.22 E-value=0.00015 Score=56.02 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHH-HHHCCCCCCCEE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHH
Q ss_conf 333578999999-963367778668-952887407779999999873489984445743788731354217454202454
Q gi|254780877|r 180 VIGRDDEMRRAI-QVLSRRTKNNPV-LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEE 257 (853)
Q Consensus 180 VIGRe~EI~~~~-~iL~r~~k~n~~-lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~ 257 (853)
|+|...+.-..+ ++......++++ +.|++|+|||-+.++++....... +++..++....
T Consensus 21 v~g~n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~-------~~~~yl~~~~~------------ 81 (227)
T PRK08903 21 IAGENAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEGG-------KNARYLDPASP------------ 81 (227)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEECCCCC------------
T ss_conf 57775999999998874388786699989999988899999999998069-------97499651104------------
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEE-EEECHHHHHHHHHCCHHHHHCC---
Q ss_conf 589999998607997699963627730266655433588887653124660489-9744899999730011132023---
Q gi|254780877|r 258 RLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCI-GATTLDEYRKYIEKDPALARRF--- 333 (853)
Q Consensus 258 r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~I-gaTT~~Eyrk~iEkD~Al~RRF--- 333 (853)
...+..... .-.+.||++|.+- +..+ .-.=|++--...+|.-+++ ++..+-..-. +.+ -|..||
T Consensus 82 --~~~~~~~~~---~d~l~iDDi~~i~--~~~q--~~lF~l~N~~~~~~~~~ll~s~~~~p~~l~-~~~--DL~SRl~~g 149 (227)
T PRK08903 82 --LLAFDFDPR---AELYAVDDVERLD--DAQQ--IALFNLFNRVRAHGKTALLVAGPAAPLALD-VRE--DLRTRLGWG 149 (227)
T ss_pred --HHHHHHHHC---CCEEEEECCCCCC--CHHH--HHHHHHHHHHHHCCCCEEEECCCCCHHHCC-CCH--HHHHHHHCC
T ss_conf --577742001---8989996411489--5699--999999999997299489971899712012-008--999999389
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 11111577767899999997898654149610158999998633320245767477899999999
Q gi|254780877|r 334 QSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 334 q~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
-.+.+++|+.+.-..||+.... -.|+.++++++.+.++-..|=+.. =-.+++-||..+
T Consensus 150 l~~~i~~pdde~~~~iL~~~a~----~rgl~l~~~v~~yl~~r~~R~~~~---L~~~l~~Ld~~s 207 (227)
T PRK08903 150 LVYEVKPLSDEDKIAALKAAAA----ERGLQLADEVPDYLLTHFRRDMPS---LMALLDALDRYS 207 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHCCCHHH---HHHHHHHHHHHH
T ss_conf 7389979799999999999999----629999889999999983478999---999999999999
No 239
>pfam02861 Clp_N Clp amino terminal domain. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site.
Probab=98.22 E-value=3.4e-06 Score=69.32 Aligned_cols=52 Identities=33% Similarity=0.502 Sum_probs=49.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999998289963389999998618876689999973999899999999999
Q gi|254780877|r 17 AQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVL 68 (853)
Q Consensus 17 A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L 68 (853)
|+++|++++|.||++||||++|+.++++.+..+|..+|+|++.+++.++..+
T Consensus 1 A~~~A~~~~~~~i~~EHlLlall~~~~~~~~~il~~~g~~~~~l~~~i~~~~ 52 (53)
T pfam02861 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLL 52 (53)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9888978699853499999999865885899999995989999999999870
No 240
>PHA02244 ATPase-like protein
Probab=98.22 E-value=9.4e-05 Score=57.57 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC-CC
Q ss_conf 36566512898726786168899999998723776530022447740345320130477112035667742113221-56
Q gi|254780877|r 592 QDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR-HP 670 (853)
Q Consensus 592 ~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~-~P 670 (853)
-+.|-|+ | +.||.|+|||..|+.+|+.|--+- .+.--=|+|| .....+-|.--|+- |.-.|. +-
T Consensus 116 v~~nipV--~-L~G~AGsGKt~~A~qIA~aLdl~F-Yf~gAI~~ef----~L~Gf~DAnG~yh~-------T~f~kaFk~ 180 (383)
T PHA02244 116 VNANIPV--F-LKGGAGSGKNHIAEQIAEALDLDF-YFMNAIMDEF----ELKGFIDANGKFHE-------TPFYEAFKK 180 (383)
T ss_pred HHCCCCE--E-EECCCCCCHHHHHHHHHHHHCCCC-EECHHHHHHH----HCCCEECCCCCEEC-------CHHHHHHHC
T ss_conf 7359856--9-975888863489999999858882-4413230134----30125648996726-------389999861
Q ss_pred CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCH
Q ss_conf 41022021441498999999998404578879997783033155954851
Q gi|254780877|r 671 YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNL 720 (853)
Q Consensus 671 ~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~ 720 (853)
-.|+|||||+-++|+++-.|=+.|-+|.+.=.-|+..--.++.+|.+.|-
T Consensus 181 GGLfLlDEiDASnP~aL~~lNaALAN~fm~FPdG~V~~HedFr~IAagNT 230 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred CCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCC
T ss_conf 88799732004487999999899864763476421100576389972465
No 241
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=98.21 E-value=1.7e-05 Score=63.63 Aligned_cols=159 Identities=25% Similarity=0.420 Sum_probs=110.4
Q ss_pred CCCE---EEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC-----C--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 7866---895288740777999999987348998444574378873135421-----7--45420245458999999860
Q gi|254780877|r 199 KNNP---VLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA-----G--AKFRGEFEERLKSLLCEIRS 268 (853)
Q Consensus 199 k~n~---~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-----g--~~~rg~~e~r~~~i~~~~~~ 268 (853)
...| |||||||||||+|....|.-+ |+..|-+.+|.|-= | =+|-|-+=+||-.-|+.+..
T Consensus 447 ~~GpqIlClvGPPGVGKTSlg~SIA~AL----------nRkFvR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t 516 (941)
T TIGR00763 447 MKGPQILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT 516 (941)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH----------CCEEEEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 8887678720726954222789999996----------880499952672203112786432034672578999876041
Q ss_pred CCCCEEEEECCHHHHC-CCCCCCCCCC-HH---HHHHHH---------HCC-CCE-EEE--EEECHHHHHHHHHCCHH-H
Q ss_conf 7997699963627730-2666554335-88---887653---------124-660-489--97448999997300111-3
Q gi|254780877|r 269 EDGEIILFIDELHVLV-GAGKTDGAMD-AS---NLLKPS---------LAR-GEL-HCI--GATTLDEYRKYIEKDPA-L 329 (853)
Q Consensus 269 ~~~~~ilfide~h~~~-gaG~~~g~~D-aa---n~LKP~---------Lar-G~l-~~I--gaTT~~Eyrk~iEkD~A-l 329 (853)
.+ ++|| ||||-=|- ++|-. .| || -+|-|- |-= =+| ++| =.+|- .+|+.=|+ |
T Consensus 517 ~N-Pl~L-lDEIDK~~~~~~~~---GDPaSALLEvLDPEQN~~F~DHYldvp~DLS~V~CyFi~TA----N~~d~IP~PL 587 (941)
T TIGR00763 517 KN-PLIL-LDEIDKIGLKSSFR---GDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVLCYFIATA----NSIDTIPRPL 587 (941)
T ss_pred CC-CEEE-EEEEEEECCCCCCC---CCHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHEEECC----CCCCCCCCCC
T ss_conf 58-8068-62022001678865---56378886412864360425530023400420021000244----7576777221
Q ss_pred HHCCCEEECCCCCHHHHHHHHHH-HHHHHHHHCC-----CCCCHHHHHHHHHH
Q ss_conf 20231111157776789999999-7898654149-----61015899999863
Q gi|254780877|r 330 ARRFQSLLVGEPTVTDTISILRG-LKERYEQHHK-----VRISDSALVSAAVL 376 (853)
Q Consensus 330 ~RRFq~i~V~Eps~~~t~~iL~g-l~~~yE~~H~-----V~i~d~al~~av~l 376 (853)
-.|=+.|.|.-=+.+|=+.|-++ |-|+.=.-|| |.|+|+||...++.
T Consensus 588 LDRMEvI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~ 640 (941)
T TIGR00763 588 LDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKY 640 (941)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHH
T ss_conf 37402452388876789999985471367987088813221268999999987
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=98.21 E-value=4.7e-06 Score=68.15 Aligned_cols=117 Identities=22% Similarity=0.328 Sum_probs=75.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC--CCCCEEEEH
Q ss_conf 898726786168899999998723776530022447740345320130477112035667742113221--564102202
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR--HPYQVVLFD 677 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~--~P~sVil~D 677 (853)
..+|+||||||||.||.+|+...........-+.|++..+.-..++--| .+...+++ ..+.++.+|
T Consensus 103 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~~------------~~~~~l~r~l~~~dLLIiD 170 (258)
T PRK09183 103 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQG------------RYKTTLQRGVMAPRLLIID 170 (258)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCC------------CHHHHHHHHHCCCCEEEEH
T ss_conf 6799899998689999999999998799399978999999999998768------------5999999874346514431
Q ss_pred HH--HHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHC-C-HH-HHHHHHHHH
Q ss_conf 14--414989999999984045788799977830331559548512687640-3-26-799999999
Q gi|254780877|r 678 EI--EKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIE-D-GD-SVHDKVMGI 739 (853)
Q Consensus 678 Ei--EKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~-~-~~-~~~~~~~~~ 739 (853)
|+ ..-.+..-++|+|++++=+ ++ .+ +|+|||+.-..-.+ . ++ .+..++.+.
T Consensus 171 dlG~~~~~~~~~~~lfeli~~Ry-----e~-----~S-~IiTSn~~~~~W~~~f~~D~~la~AilDR 226 (258)
T PRK09183 171 EIGYLPFSQEEANLFFQVIAKRY-----EK-----GA-MILTSNLPFGQWDQTFAGDAALTSAMLDR 226 (258)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHH-----CC-----CC-EEEECCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 33154688889999999999985-----76-----77-89988999789856516869999999998
No 243
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=7e-06 Score=66.78 Aligned_cols=105 Identities=22% Similarity=0.409 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHH
Q ss_conf 89999999999874101236566512898726786168899999998723776530022447740345320130477112
Q gi|254780877|r 574 SAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGY 653 (853)
Q Consensus 574 ~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGY 653 (853)
.+|-+.+.++++..|. | -.+||.||.|+||+.+|..+|..|+-....--...++.- .-|-+
T Consensus 3 ~~~We~L~~~i~~~Rl-------~-HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~-----------~HPD~ 63 (290)
T PRK05917 3 NAAWEALLQRVRDQKV-------P-SAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQK-----------IHPDI 63 (290)
T ss_pred CHHHHHHHHHHHCCCC-------C-EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHC-----------CCCCE
T ss_conf 5499999999983996-------6-068768999865999999999998578996168898746-----------89985
Q ss_pred CC-CCCC-CC---------CCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 03-5667-74---------211322156----410220214414989999999984045
Q gi|254780877|r 654 VG-YEEG-GA---------LTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDG 697 (853)
Q Consensus 654 vG-~~~g-g~---------Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G 697 (853)
.- ..+| |. |.+.+...| |-|+++|+.|+.+.+-.|.||-.|+|-
T Consensus 64 ~~i~pe~k~~~~~Id~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEP 122 (290)
T PRK05917 64 HEFFPEGKGRLHSIETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDP 122 (290)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCC
T ss_conf 99615777887867899999999641864688269997567763899999999973479
No 244
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.21 E-value=0.00017 Score=55.43 Aligned_cols=196 Identities=22% Similarity=0.391 Sum_probs=136.6
Q ss_pred HHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC----CCHHHCCCCHHCCCCCCCC
Q ss_conf 741012365665128987267861688999999987237765300224477403453----2013047711203566774
Q gi|254780877|r 586 RFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS----VSRLIGSPPGYVGYEEGGA 661 (853)
Q Consensus 586 ~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~----vs~LiGappGYvG~~~gg~ 661 (853)
+...||... .|---+.|+|.+|+|||..|...|..||. -.++| ..|- -.-|+| -||||... .
T Consensus 47 r~~~~l~~~-~P~lhm~ftG~PGtGkttva~~m~~~l~~--lGy~r-------~G~~~~~trddlvG---qy~GhtaP-k 112 (284)
T TIGR02880 47 RQKLGLASA-APSLHMSFTGNPGTGKTTVALRMAQILHR--LGYVR-------KGHLVSVTRDDLVG---QYIGHTAP-K 112 (284)
T ss_pred HHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCC-------CCCEEEEEHHHHHH---HHHCCCCC-H
T ss_conf 987422104-88326775168987248999999999987--15400-------36267853001311---22125772-2
Q ss_pred CCHHHHCCCCCEEEEHHHHHC---------CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHH
Q ss_conf 211322156410220214414---------98999999998404578879997783033155954851268764032679
Q gi|254780877|r 662 LTEAVRRHPYQVVLFDEIEKA---------HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSV 732 (853)
Q Consensus 662 Lte~vr~~P~sVil~DEiEKa---------h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~ 732 (853)
--|-+++---+|++.||--.- ..+-..+|||++++-+ .+.+||+..
T Consensus 113 tke~lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~r-----------~~lvvi~aG-------------- 167 (284)
T TIGR02880 113 TKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-----------DDLVVILAG-------------- 167 (284)
T ss_pred HHHHHHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-----------CCEEEEEEC--------------
T ss_conf 6899987428736642203321776410223799999999872365-----------537888717--------------
Q ss_pred HHHHHHHHHHHC--CHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCC-C
Q ss_conf 999999998628--8577266681586288998999999999999999999857989999889999999708982206-2
Q gi|254780877|r 733 HDKVMGIVRSAF--KPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYG-A 809 (853)
Q Consensus 733 ~~~~~~~l~~~f--~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~G-a 809 (853)
..+.+..+| .|-|-.|+-+-|-|..++.+++..|+..+|.+-.-++. -+-.....+|+..+-..|.|. |
T Consensus 168 ---y~~rm~~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~~~y~~~-----~~~~~~~~~y~~~r~~~P~f~na 239 (284)
T TIGR02880 168 ---YKDRMDSFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEEQQYRLS-----AEAEEALADYIALRRKQPFFANA 239 (284)
T ss_pred ---CHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf ---0788888751178624677643158887767899999998865412111-----88999999999986317831467
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1579999987334999999
Q gi|254780877|r 810 RPLKRVIQRYIQNPLAERV 828 (853)
Q Consensus 810 R~l~r~i~~~i~~~la~~i 828 (853)
|+++..|.+.=...-.+.+
T Consensus 240 rs~rna~dr~rlr~a~rl~ 258 (284)
T TIGR02880 240 RSIRNALDRARLRQANRLL 258 (284)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 8899999889888899999
No 245
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.20 E-value=5.1e-05 Score=59.76 Aligned_cols=205 Identities=20% Similarity=0.284 Sum_probs=96.8
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC---CCC--------H
Q ss_conf 77674594899999999998741012365665128987267861688999999987237765300---224--------4
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMI---RID--------M 634 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~li---r~d--------M 634 (853)
+-.-++|||.--..+.. ..-+--+|.-|..|+-|+|||.++++||..|=. -..+ +|+ |
T Consensus 15 pf~aivGqd~lk~aL~l---------~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~--~~~V~gc~f~cdP~~P~~~ 83 (423)
T COG1239 15 PFTAIVGQDPLKLALGL---------NAVDPQIGGALIAGEKGTAKSTLARALADLLPE--IEVVIGCPFNCDPDDPEEM 83 (423)
T ss_pred CHHHHCCCHHHHHHHHH---------HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC--CCEECCCCCCCCCCCHHHH
T ss_conf 65654375377788765---------302631042687668875277999999986796--3321688788998870555
Q ss_pred HHHCCCC-----------------------CCCHHHCC-CCHHC-CCC----CCCCCCHHHHCCCCCEEEEHHHHHCCHH
Q ss_conf 7740345-----------------------32013047-71120-356----6774211322156410220214414989
Q gi|254780877|r 635 SEYMEKH-----------------------SVSRLIGS-PPGYV-GYE----EGGALTEAVRRHPYQVVLFDEIEKAHSD 685 (853)
Q Consensus 635 sey~e~~-----------------------~vs~LiGa-ppGYv-G~~----~gg~Lte~vr~~P~sVil~DEiEKah~~ 685 (853)
.+.+-.+ +--||+|+ -|-.+ .++ +.|.|-.+= -.|+.+||+--.+..
T Consensus 84 c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An----RGIlYvDEvnlL~d~ 159 (423)
T COG1239 84 CDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN----RGILYVDEVNLLDDH 159 (423)
T ss_pred HHHHHHHCCCCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCC----CCEEEEECCCCCCHH
T ss_conf 1999862023244542210031223887630433004567999972683002775110035----887987233435189
Q ss_pred HHHHHHHHHHCCE-EECCCCCEEEC-CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCC-EEECCCCC
Q ss_conf 9999999840457-88799977830-331559548512687640326799999999986288577266681-58628899
Q gi|254780877|r 686 VHNILLQVLDDGR-LTDSQGRTVDF-RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDE-IILFEKLR 762 (853)
Q Consensus 686 v~~~llqild~G~-ltd~~G~~v~f-~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~-iv~F~~l~ 762 (853)
+.+.||+++.+|+ ..--.|-.+.. -+.++|-|.|-- ..-.+|.|+.||.. |=+-.|.+
T Consensus 160 lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE-------------------eGeLrpqLlDRfg~~v~~~~~~~ 220 (423)
T COG1239 160 LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE-------------------EGELRPQLLDRFGLEVDTHYPLD 220 (423)
T ss_pred HHHHHHHHHHHCCCEEEECCEEECCCCCEEEEEECCCC-------------------CCCCCHHHHHHHCCEEECCCCCC
T ss_conf 99999999971774033575031367617999644854-------------------46632466754111562347887
Q ss_pred HHHHHHHHHHH-----------------HHHHHHHH-HHC--CCEEEECHHHHHHHHHCCCC
Q ss_conf 89999999999-----------------99999999-857--98999988999999970898
Q gi|254780877|r 763 KEDMAKIVRIQ-----------------LGRVLSLI-KER--NISMDFDDQVIDWLSCRGYD 804 (853)
Q Consensus 763 ~~~~~~i~~~~-----------------l~~l~~~l-~~~--~i~l~~~~~~~~~l~~~~~~ 804 (853)
.++...|++.. ...+..++ ..+ -..+++++.+..++++.|..
T Consensus 221 ~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~ 282 (423)
T COG1239 221 LEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCAR 282 (423)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 88889999998875008299999999999999999999984466646767799999999998
No 246
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=0.00053 Score=51.50 Aligned_cols=46 Identities=13% Similarity=-0.030 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHHHH--C--CCCHHHHH-HHCCCCHHHHHHHHHHHHCCC
Q ss_conf 9870259998766872--7--75178899-975999899999999873778
Q gi|254780877|r 102 GDSFVTAEKFLLAMVM--E--TGGIGESL-KKCGLKFSRLEESIKKLRKGR 147 (853)
Q Consensus 102 g~~~I~~ehLLlAIl~--e--~~s~a~iL-~~~gi~~~~l~e~i~~~~~~~ 147 (853)
-++.|+.+|++-++.. + +-.++++| ..-|+-+..+-..+.+-.+-.
T Consensus 15 f~~~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~ 65 (696)
T PRK06872 15 FSEVVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65 (696)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 645238599999999999719863047511789888889999999986789
No 247
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8e-05 Score=58.16 Aligned_cols=76 Identities=30% Similarity=0.496 Sum_probs=54.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHH----HHCCC
Q ss_conf 7778668952887407779999999873489984445743788731354217454202-454589999998----60799
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE-FEERLKSLLCEI----RSEDG 271 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-~e~r~~~i~~~~----~~~~~ 271 (853)
-.|+|.+|||+.|.|||-+++-||+.+ +||-...++. + +.-+.|.|| -|.-+..++... ..+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiADAT-------t-LTEAGYVGEDVENillkLlqaadydV~rAe- 162 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIADAT-------T-LTEAGYVGEDVENILLKLLQAADYDVERAE- 162 (408)
T ss_pred EEECCEEEECCCCCCHHHHHHHHHHHH---CCCEEECCCC-------C-HHHCCCCCHHHHHHHHHHHHHCCCCHHHHH-
T ss_conf 320317998889975779999999984---8984751444-------1-210663550089999999987645888882-
Q ss_pred CEEEEECCHHHHC
Q ss_conf 7699963627730
Q gi|254780877|r 272 EIILFIDELHVLV 284 (853)
Q Consensus 272 ~~ilfide~h~~~ 284 (853)
.=|.|||||.-|-
T Consensus 163 rGIIyIDEIDKIa 175 (408)
T COG1219 163 RGIIYIDEIDKIA 175 (408)
T ss_pred CCEEEEECHHHHH
T ss_conf 8859985102542
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.19 E-value=3.1e-06 Score=69.61 Aligned_cols=101 Identities=27% Similarity=0.470 Sum_probs=69.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCC---CCCCHHHHCCCCCEEE
Q ss_conf 2898726786168899999998723776530022447740345320130477112035667---7421132215641022
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG---GALTEAVRRHPYQVVL 675 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~g---g~Lte~vr~~P~sVil 675 (853)
.+++|.||+|||||.||-+++..+-......+-+..+|+ +++|..+ +++| ..|...+ ..+-|+.
T Consensus 106 ~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el-----~~~Lk~~------~~~~~~~~~l~~~l--~~~dlLI 172 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL-----LSKLKAA------FDEGRLEEKLLREL--KKVDLLI 172 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH-----HHHHHHH------HHCCCHHHHHHHHH--HHCCEEE
T ss_conf 828998999987999999999999983984999885999-----9999998------74552689999887--5289899
Q ss_pred EHHHHH--CCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 021441--498999999998404578879997783033155954851268
Q gi|254780877|r 676 FDEIEK--AHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 676 ~DEiEK--ah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
+|||=. .++.+-+.|+|+++.=+ -+... |+|||.--.
T Consensus 173 iDDlG~~~~~~~~~~~~~q~I~~r~----------~~~~~-~~tsN~~~~ 211 (254)
T COG1484 173 IDDIGYEPFSQEEADLLFQLISRRY----------ESRSL-IITSNLSFG 211 (254)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHH----------HHCCC-CEEECCCHH
T ss_conf 8236776688155879999999999----------73054-202058827
No 249
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=6.4e-05 Score=58.95 Aligned_cols=208 Identities=14% Similarity=0.211 Sum_probs=113.4
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 54776745948999999999987410123656651289872678616889999999872377653002244774034532
Q gi|254780877|r 564 TEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV 643 (853)
Q Consensus 564 ~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~v 643 (853)
-....-|+|-......- .+...+.+--..+..|.--+...|++|.|||.|..+++.++-......+-+...+|+....-
T Consensus 108 ytFd~FVvG~~N~lA~~-aa~~va~~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F~~~~v~ 186 (455)
T PRK12422 108 MTFANFLVTPENDLPFR-ILQEFAKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELFTEHLVS 186 (455)
T ss_pred CCCCCEEECCCCHHHHH-HHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
T ss_conf 83558331586099999-99999837553588767875887899997899999999985379986999749999999999
Q ss_pred CHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf 013047711203566774211322156410220214414--989999999984045788799977830331559548512
Q gi|254780877|r 644 SRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG 721 (853)
Q Consensus 644 s~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G 721 (853)
+-=-|.. ...-+.. +-.-|+|+|.|.-- -+..+.-|+.+|+. |.+ .+--||+||.--
T Consensus 187 ai~~~~~---------~~Fr~~y--r~~DvLLIDDIQfl~gK~~tqeEff~tfN~--L~~--------~~KQIVitsDr~ 245 (455)
T PRK12422 187 AIRSGEM---------QRFRSFY--RNVDALFIEDIEVFSGKGATQEEFFHTFNS--LHT--------EGKLIVISSSYA 245 (455)
T ss_pred HHHCCCH---------HHHHHHH--HCCCEEEEEHHHHHHCCHHHHHHHHHHHHH--HHH--------CCCEEEEECCCC
T ss_conf 9975889---------9999999--638877631478872848899999999999--998--------599699968989
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 68764032679999999998628857726668158628899899999999999999999985798999988999999970
Q gi|254780877|r 722 AEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCR 801 (853)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 801 (853)
-..+ ..+.+.|...|.- .-++-..|.+.+....|+.... ...+ +.+++++++||++.
T Consensus 246 P~el--------~~l~~RL~SRf~~------GL~v~I~~Pd~etr~~Il~~k~-------~~~~--~~l~~ev~~~iA~~ 302 (455)
T PRK12422 246 PGDL--------KAMEERLISRFEW------GIAIPIHPLTREGLRSFLMRQA-------EQLS--IRIEETALDFLIQA 302 (455)
T ss_pred HHHH--------HHHHHHHHHHHHC------CEEECCCCCCHHHHHHHHHHHH-------HHCC--CCCCHHHHHHHHHH
T ss_conf 5765--------1268999988637------6132168999899999999999-------8718--88844689999999
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 898220621579999987
Q gi|254780877|r 802 GYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 802 ~~~~~~GaR~l~r~i~~~ 819 (853)
- ....|.|.+.+.+.
T Consensus 303 i---~~niReLeGal~~l 317 (455)
T PRK12422 303 L---SSNVKTLLHALTLL 317 (455)
T ss_pred H---HHHHHHHHHHHHHH
T ss_conf 7---55179999999999
No 250
>KOG0738 consensus
Probab=98.18 E-value=8.9e-06 Score=65.92 Aligned_cols=109 Identities=28% Similarity=0.403 Sum_probs=65.3
Q ss_pred HHCCHHHHHHHHHHHHHH------HHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC
Q ss_conf 745948999999999987------41012365665128987267861688999999987237765300224477403453
Q gi|254780877|r 569 SVIGQSAAVESVSNALRR------FRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS 642 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~------~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~ 642 (853)
-|.|-.+|.+-+-.|+.+ ...|+. ||--..|++||+|+|||-|||++|..- .-.-||.|- ..-
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~Gir---rPWkgvLm~GPPGTGKTlLAKAvATEc-----~tTFFNVSs---stl 281 (491)
T KOG0738 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIR---RPWKGVLMVGPPGTGKTLLAKAVATEC-----GTTFFNVSS---STL 281 (491)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCEEEEECCCCCCHHHHHHHHHHHH-----CCEEEEECH---HHH
T ss_conf 631649999999988754442488874244---653000556799974789999998861-----672787402---456
Q ss_pred CCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCEEEEHHHHH------------CCHHHHHHHHHHHH
Q ss_conf 20130477112035667--7421132215641022021441------------49899999999840
Q gi|254780877|r 643 VSRLIGSPPGYVGYEEG--GALTEAVRRHPYQVVLFDEIEK------------AHSDVHNILLQVLD 695 (853)
Q Consensus 643 vs~LiGappGYvG~~~g--g~Lte~vr~~P~sVil~DEiEK------------ah~~v~~~llqild 695 (853)
+|+ |-|-.|- -.|-|.-|..--|+|++|||+- |...|-+=||+-+|
T Consensus 282 tSK-------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738 282 TSK-------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred HHH-------HCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 555-------325269999999999987488535335677887257986503678888889999863
No 251
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.17 E-value=0.00015 Score=56.04 Aligned_cols=142 Identities=17% Similarity=0.120 Sum_probs=72.2
Q ss_pred CCCCHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHHHHH--HCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCC
Q ss_conf 6761078864-4356998729853333357899999996--3367778668952887407779999999873----4899
Q gi|254780877|r 156 QGFDALKKYC-RDLTEEARNGKLDPVIGRDDEMRRAIQV--LSRRTKNNPVLIGDPGVGKTAIIEGLASRII----NGDI 228 (853)
Q Consensus 156 ~~~~~L~ky~-~DLTe~Ar~GkLDPVIGRe~EI~~~~~i--L~r~~k~n~~lvGe~GvGKtaive~la~~i~----~~~v 228 (853)
+..++.++|. .++.++|-..| .-+||++-++- ..++.+.=-+|.|+||+||||.|.-||..+- +=.-
T Consensus 5 ~~epW~ekyaP~~l~ELAVHKK------KV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~N 78 (490)
T pfam03215 5 EHELWTEKYKPRRRDELAIHKK------KIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSN 78 (490)
T ss_pred CCCCCHHHCCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf 3586414308887899855354------3999999999985477773189987989988999999999975968998148
Q ss_pred CHHHCCCEE-EEEEH---HHHHCCCCCCCHHHHHHHHHHHH--HH-HCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 844457437-88731---35421745420245458999999--86-0799769996362773026665543358888765
Q gi|254780877|r 229 PESLKGKRL-MALDM---GALIAGAKFRGEFEERLKSLLCE--IR-SEDGEIILFIDELHVLVGAGKTDGAMDASNLLKP 301 (853)
Q Consensus 229 p~~l~~~~i-~~ld~---~~l~ag~~~rg~~e~r~~~i~~~--~~-~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP 301 (853)
|..+.+... +..+- ..-.-+.+.-.+|++-+..--.. +. .....-|+.|+|+-+..- +. +...-+.|.-
T Consensus 79 P~~~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~-~d---~~~fr~~L~~ 154 (490)
T pfam03215 79 PEYLHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFY-SD---AEKFREVIRE 154 (490)
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCC-CC---HHHHHHHHHH
T ss_conf 6545677502210121234576666377776788762233565445788735999965887442-36---6999999999
Q ss_pred HHCCCC
Q ss_conf 312466
Q gi|254780877|r 302 SLARGE 307 (853)
Q Consensus 302 ~LarG~ 307 (853)
+|+.+.
T Consensus 155 ~L~s~~ 160 (490)
T pfam03215 155 VLQSIW 160 (490)
T ss_pred HHHHCC
T ss_conf 997089
No 252
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.17 E-value=6.1e-05 Score=59.13 Aligned_cols=291 Identities=20% Similarity=0.349 Sum_probs=170.7
Q ss_pred HHCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9828996338999999861-8876689999973999899999-9999997459547897777069899999999999999
Q gi|254780877|r 22 LAQGHQNLVPEHVLHIFLE-DEQGAVYSLIQCSGGDIAQLKD-YNQTVLSKIPKVTGGGAQVYLSQPLAVILSKSEEIAK 99 (853)
Q Consensus 22 ~~~~H~~Vt~EHLLlaLL~-~~~s~i~~iL~~~gvd~~~L~~-~le~~L~k~~k~~~~~~~~~~S~~l~rvL~~A~~~A~ 99 (853)
+......-..+.++-.+-. +.+..+..++...+--+-.++. .+...|+.+...+.+ +...++..+-..|.-.+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~thG----~~Gadlaal~~eaam~~l 485 (980)
T TIGR01243 410 KDERFEKEKIEKIIEKVSKANSEDEIKEILKEDGNVYVEVRNRLIDKLLDKLAEVTHG----FVGADLAALAKEAAMAAL 485 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHH
T ss_conf 6556678899999998863102678999975012124678999999999988654236----203559999899999999
Q ss_pred H--CCCCCCCHHHHHHHHHHCCCCH-HHHHHHCCCCHHHHHHHHHHHHCCCCCCC--CCCC---CCCCHHHHHHHHHHHH
Q ss_conf 7--1987025999876687277517-88999759998999999998737788787--7754---6761078864435699
Q gi|254780877|r 100 K--SGDSFVTAEKFLLAMVMETGGI-GESLKKCGLKFSRLEESIKKLRKGRVADS--VNAE---QGFDALKKYCRDLTEE 171 (853)
Q Consensus 100 ~--~g~~~I~~ehLLlAIl~e~~s~-a~iL~~~gi~~~~l~e~i~~~~~~~~~~~--~~~e---~~~~~L~ky~~DLTe~ 171 (853)
. .....|+.+. ..+ ..+|.++.++..++.+.+....+..--.- .-|. +...-|+..-..|-+
T Consensus 486 rr~~~eg~i~~ea---------~~iP~~vl~~lkvt~~df~ealk~~~P~~~re~~~evP~v~W~diGGlee~kq~lre- 555 (980)
T TIGR01243 486 RRLIREGKINLEA---------EEIPKEVLEELKVTMKDFKEALKMVEPSALREVLVEVPNVKWEDIGGLEEVKQELRE- 555 (980)
T ss_pred HHHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHH-
T ss_conf 9874027745026---------775799998732228999999851062341100023375110014667899999987-
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCC
Q ss_conf 87298533333578999999963367778668952887407779999999873489984445743788731354217454
Q gi|254780877|r 172 ARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKF 251 (853)
Q Consensus 172 Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~ 251 (853)
|-+- |+ + ..++++-++=+--..++|.|+||.|||-+....|..- +.-.+++--..++ .++
T Consensus 556 aveW---Pl--k---~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es----------~anfi~v~GPe~l--skW 615 (980)
T TIGR01243 556 AVEW---PL--K---APEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRGPEIL--SKW 615 (980)
T ss_pred HHHC---CC--C---HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCC----------CCCEEEECCCHHH--HHH
T ss_conf 7523---44--4---0589986078899734874689861688888774014----------5646774073122--344
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC-CC---CC-HHHH----HHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf 202454589999998607997699963627730266655-43---35-8888----765312466048997448999997
Q gi|254780877|r 252 RGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTD-GA---MD-ASNL----LKPSLARGELHCIGATTLDEYRKY 322 (853)
Q Consensus 252 rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~-g~---~D-aan~----LKP~LarG~l~~IgaTT~~Eyrk~ 322 (853)
-||-|.+++.|......+. +.|+|+|||..|-.+-+.. ++ .| +-|- +...-...++-+|+||.--.-
T Consensus 616 vGese~~ir~if~~arq~a-P~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi--- 691 (980)
T TIGR01243 616 VGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELDGLEELSDVVVIAATNRPDI--- 691 (980)
T ss_pred HCHHHHHHHHHHHHHHHCC-CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC---
T ss_conf 0324799999999864128-737873021110541244210010268999999986404434366589861588742---
Q ss_pred HHCCHHHHH--CCCE-EECCCCCHHHHHHHHHH
Q ss_conf 300111320--2311-11157776789999999
Q gi|254780877|r 323 IEKDPALAR--RFQS-LLVGEPTVTDTISILRG 352 (853)
Q Consensus 323 iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~g 352 (853)
=||||-| ||.+ |.|..|+.+.-.+|.+-
T Consensus 692 --~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ 722 (980)
T TIGR01243 692 --LDPALLRPGRLDRLILVPAPDEEARLEIFKI 722 (980)
T ss_pred --CCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf --3610048874121686059855676767655
No 253
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.17 E-value=0.00022 Score=54.54 Aligned_cols=66 Identities=27% Similarity=0.581 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHH------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-HHHCCCEEEEEEHHHH
Q ss_conf 33333578999999963------36777866895288740777999999987348998-4445743788731354
Q gi|254780877|r 178 DPVIGRDDEMRRAIQVL------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIP-ESLKGKRLMALDMGAL 245 (853)
Q Consensus 178 DPVIGRe~EI~~~~~iL------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp-~~l~~~~i~~ld~~~l 245 (853)
|-++| ..|-|+..-|. .|..-..++++|+||.|||||+-|+|+-.-.+ || -.+.+-.||++++..-
T Consensus 39 dG~VG-Q~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d-vPF~~isgsEiYS~E~kKT 111 (450)
T COG1224 39 DGLVG-QEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED-VPFVAISGSEIYSLEVKKT 111 (450)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCEEECCCEEEEECCCHH
T ss_conf 86112-4988876259999997176666179997899976889999999985899-9821501332233100088
No 254
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=0.0003 Score=53.51 Aligned_cols=199 Identities=16% Similarity=0.194 Sum_probs=122.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCC----CHHHCCCEEEEEEHHHHHCCCC--
Q ss_conf 333335789999999633677786-689528874077799999998734899----8444574378873135421745--
Q gi|254780877|r 178 DPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDI----PESLKGKRLMALDMGALIAGAK-- 250 (853)
Q Consensus 178 DPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~v----p~~l~~~~i~~ld~~~l~ag~~-- 250 (853)
+-+||-+.-++.+.+.+...+=.+ -++.|++|||||+++..+|+.+....- |..+.+.-.-+.....+.+|+.
T Consensus 23 ~~liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpd 102 (352)
T PRK09112 23 NRLFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPN 102 (352)
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 46278699999999999849965246535899808999999999998669986668655678887877899997489999
Q ss_pred --------------CCCHH-HHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC--CEEE
Q ss_conf --------------42024-54589999998607---9976999636277302666554335888876531246--6048
Q gi|254780877|r 251 --------------FRGEF-EERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG--ELHC 310 (853)
Q Consensus 251 --------------~rg~~-e~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG--~l~~ 310 (853)
.+... -+.++.+++.+..+ .+.-|..||+.|++ +.+|+|-|--.|..- ...+
T Consensus 103 l~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m--------~~~aaNALLK~LEEPp~~~~f 174 (352)
T PRK09112 103 LLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDM--------NRNAANAILKTLEEPPARALF 174 (352)
T ss_pred EEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH--------HHHHHHHHHHHHHCCCCCEEE
T ss_conf 565534322021454335777999999998454886688069998187874--------699999999985348987489
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA 390 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA 390 (853)
|=.||.-+ +.. +.+-.|-|++.....+.++....|+.+.+. .++ ..++++...+.+|.== |-.|
T Consensus 175 iLit~~~~--~ll---~TI~SRCq~~~f~pL~~~di~~~L~~i~~~----~~~-~~~~~~~~l~~~a~GS------~~~A 238 (352)
T PRK09112 175 ILISHSSG--RLL---PTIRSRCQPISLKPLDDDELKKALSHLGSK----QGI-SAGEETEALLQRSEGS------VRKA 238 (352)
T ss_pred EEEECCHH--HCH---HHHHHHCCCCCCCCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHCCC------HHHH
T ss_conf 98869977--776---899974332148893989999999987512----689-9879999999870899------8899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780877|r 391 IDLMDEASAR 400 (853)
Q Consensus 391 IDllDeA~A~ 400 (853)
+.|++.-|..
T Consensus 239 l~L~~~~gl~ 248 (352)
T PRK09112 239 LLLLNYGGLE 248 (352)
T ss_pred HHHHCCCHHH
T ss_conf 9874487799
No 255
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.1e-05 Score=59.75 Aligned_cols=110 Identities=28% Similarity=0.452 Sum_probs=72.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 76745948999999999987410123656--------6512898726786168899999998723776530022447740
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQ--------RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~--------~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
-.-|.|.|+|.+.+...+--. ++|+ =|-|+ |++||+|+|||-|||+.|..- +-.+..+--|+|-
T Consensus 149 F~DVAG~dEakeel~EiVdfL----k~p~ky~~lGakiPkGv-lLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FV 220 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFL----KNPKKYQALGAKIPKGV-LLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFV 220 (596)
T ss_pred HHHHCCCHHHHHHHHHHHHHH----HCCHHHHHCCCCCCCCE-EEECCCCCCCHHHHHHHHCCC---CCCCEECCCHHHH
T ss_conf 566418679999999999986----38556675235345652-685599987278999984546---8983530344464
Q ss_pred CCCCCCHHHCCCCHHCCCCCCCCCCH-HHHCCCCCEEEEHHHHHC-----------CHHHHHHHHHHHH
Q ss_conf 34532013047711203566774211-322156410220214414-----------9899999999840
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEGGALTE-AVRRHPYQVVLFDEIEKA-----------HSDVHNILLQVLD 695 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~gg~Lte-~vr~~P~sVil~DEiEKa-----------h~~v~~~llqild 695 (853)
-..+|-|.-+|= .|-+ +-++.| |+|.+|||+.- |-+--+.|=|+|-
T Consensus 221 -----emfVGvGAsRVR-----dLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLv 278 (596)
T COG0465 221 -----EMFVGVGASRVR-----DLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 278 (596)
T ss_pred -----HHHCCCCCHHHH-----HHHHHHHCCCC-CEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf -----431478838889-----99998551599-66987634331454577889980699999988885
No 256
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.15 E-value=0.0001 Score=57.21 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=68.4
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCEEE-CCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHC
Q ss_conf 10220214414989999999984045788-79997783033155954851268764032679999999998628857726
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGRLT-DSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLN 750 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~lt-d~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefln 750 (853)
.++=|-|+=|++.+++..||.+-++|.+. +++.-.++|. .+||-+||- +++-.- ....+-..|++
T Consensus 235 Gl~efvE~~K~~~~~L~~lL~atQE~~i~~~~~~~~i~~D-~vIiahsNe-~E~~~f------------~~~~~~eA~~d 300 (358)
T pfam08298 235 GLMEFVEMFKAPIKVLHPLLTATQEGNYNSTEKFSAIPFD-GIILAHSNE-SEWNSF------------KSNKNNEAFLD 300 (358)
T ss_pred CCEEEHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEECC-EEEECCCCH-HHHHHH------------HCCCCCHHHHC
T ss_conf 7554098761829999998522124622477875603314-268768984-999987------------44864346656
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-EEEECHHHHHHHHH
Q ss_conf 668158628899899999999999999999985798-99998899999997
Q gi|254780877|r 751 RLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNI-SMDFDDQVIDWLSC 800 (853)
Q Consensus 751 Rid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i-~l~~~~~~~~~l~~ 800 (853)
|+.-|=+=.-|.-.+=.+|.++.+.+ ..+ ...+.|.+++..+.
T Consensus 301 R~~~v~vPY~lr~~eE~kIY~k~l~~-------s~~~~~h~APhtl~~aa~ 344 (358)
T pfam08298 301 RIVVIKVPYCLRVSEEIKIYEKLLKE-------SELADAHCAPHTLEVAAM 344 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCHHHHHHH
T ss_conf 37999676326717899999998630-------446677829648999999
No 257
>KOG2004 consensus
Probab=98.15 E-value=0.00011 Score=57.08 Aligned_cols=184 Identities=24% Similarity=0.446 Sum_probs=118.0
Q ss_pred HHHCCCCCC-CCCHHHHHHHHHHHHCC-CCCCC-----EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 987298533-33357899999996336-77786-----689528874077799999998734899844457437887313
Q gi|254780877|r 171 EARNGKLDP-VIGRDDEMRRAIQVLSR-RTKNN-----PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 171 ~Ar~GkLDP-VIGRe~EI~~~~~iL~r-~~k~n-----~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
.+...-||- =.|-++-=+|+++-++= +-+++ .|++|+||||||+|...+|.-+ |+..|.+.+|
T Consensus 403 ~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvG 472 (906)
T KOG2004 403 ARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVG 472 (906)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHH----------CCCEEEEECC
T ss_conf 989876346530168899999999998751466788379986899877321899999984----------8746998536
Q ss_pred HHHC-----C--CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCC--------C---HHHHHHHHHC-
Q ss_conf 5421-----7--454202454589999998607997699963627730266655433--------5---8888765312-
Q gi|254780877|r 244 ALIA-----G--AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAM--------D---ASNLLKPSLA- 304 (853)
Q Consensus 244 ~l~a-----g--~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~--------D---aan~LKP~La- 304 (853)
.|-- | -.|-|-.-.|+-..++-+... +++|| |||+.-+ |.|-+ |.- | -+|+|.-||-
T Consensus 473 G~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~-NPliL-iDEvDKl-G~g~q-GDPasALLElLDPEQNanFlDHYLdV 548 (906)
T KOG2004 473 GMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTE-NPLIL-IDEVDKL-GSGHQ-GDPASALLELLDPEQNANFLDHYLDV 548 (906)
T ss_pred CCCCHHHHCCCCEEEECCCCHHHHHHHHHHCCC-CCEEE-EEHHHHH-CCCCC-CCHHHHHHHHCCHHHCCCHHHHCCCC
T ss_conf 634277642542110014884899999861778-86588-5322341-78877-98689998743965355345420266
Q ss_pred ---CCCEEEEEEECHHHHHHHHHC-CHHHHHCCCEEECCCCCHHHHHHHHH-HHHHHHHHHCC-----CCCCHHHHHHHH
Q ss_conf ---466048997448999997300-11132023111115777678999999-97898654149-----610158999998
Q gi|254780877|r 305 ---RGELHCIGATTLDEYRKYIEK-DPALARRFQSLLVGEPTVTDTISILR-GLKERYEQHHK-----VRISDSALVSAA 374 (853)
Q Consensus 305 ---rG~l~~IgaTT~~Eyrk~iEk-D~Al~RRFq~i~V~Eps~~~t~~iL~-gl~~~yE~~H~-----V~i~d~al~~av 374 (853)
-...-+|++-- .|+. -++|-.|.+.|.+.--..+|-+.|-+ .+-++--.-|| |+|+++|+.+.+
T Consensus 549 p~DLSkVLFicTAN------~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI 622 (906)
T KOG2004 549 PVDLSKVLFICTAN------VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI 622 (906)
T ss_pred CCCHHHEEEEEECC------CCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
T ss_conf 42111068898536------445698566412232203672279899999984125789874998786586299999999
No 258
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.14 E-value=3.3e-05 Score=61.33 Aligned_cols=111 Identities=25% Similarity=0.337 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEE--------------------
Q ss_conf 333578999999963367778668952887407779999999873489984445743788--------------------
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMA-------------------- 239 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~-------------------- 239 (853)
|+|.+.-.+-+.-..+..+ |.+|+|+||+|||.+++.++.-+-.=.--+.+.-..|++
T Consensus 5 i~GQ~~akrAl~iAaaG~H--~lLl~GpPG~GKTmlA~rl~~iLP~l~~~e~le~~~i~S~~g~~~~~~l~~~rPfr~PH 82 (207)
T pfam01078 5 VKGQEQAKRALEIAAAGGH--NLLMIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDGGLIRRRPFRAPH 82 (207)
T ss_pred HCCCHHHHHHHHHHHCCCC--CEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6385999999999854787--58978899802999997630148998789988777642303687777744579865788
Q ss_pred --EEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf --73135421745420245458999999860799769996362773026665543358888765312466048
Q gi|254780877|r 240 --LDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHC 310 (853)
Q Consensus 240 --ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~ 310 (853)
....+|+.|.+-- .--|+.-+. +=|||+||+.-+ .-++-+.|...|..|.+.+
T Consensus 83 hs~s~~aliGGg~~~---------~PGeIslAH-~GVLFLDE~~Ef--------~~~vle~LrqpLE~~~v~I 137 (207)
T pfam01078 83 HSASAAALVGGGSIP---------RPGEISLAH-NGVLFLDELPEF--------SRRVLESLRQPLEDGEITI 137 (207)
T ss_pred CCCCHHHCCCCCCCC---------CCCCEEECC-CCEEEECCHHHC--------CHHHHHHHHHHHCCCCEEE
T ss_conf 764363322688889---------997066636-878884764653--------9889999987660494899
No 259
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.13 E-value=7.3e-05 Score=58.46 Aligned_cols=201 Identities=20% Similarity=0.250 Sum_probs=104.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH--------
Q ss_conf 853333357899999996336--7778668952887407779999999873489984445743788731354--------
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL-------- 245 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-------- 245 (853)
.++.++|.+.-++++++.-.| +...+++|.||+|+||+.++..+-..= .-++..++.+|-+++
T Consensus 323 ~f~~l~g~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~S-------~r~~~pfv~vnC~ai~~~~~e~e 395 (639)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNES-------ERAAGPYIAVNCQLLPDEALAEE 395 (639)
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC-------CCCCCCEEEEECCCCCHHHHHHH
T ss_conf 85544679999999999999996889968988989810999999999557-------77899818987898984678998
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-------------CCEEEEE
Q ss_conf 217454202454589999998607997699963627730266655433588887653124-------------6604899
Q gi|254780877|r 246 IAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-------------GELHCIG 312 (853)
Q Consensus 246 ~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-------------G~l~~Ig 312 (853)
+-|.. .|.....-.+.+. .++|. .||+|||+.| +.+.-.-|--.|.. -++|+|+
T Consensus 396 lfG~~-~~~~~~g~~g~~e---~A~gG-TL~LdeI~~l--------p~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiia 462 (639)
T PRK11388 396 FLGSD-RTDSENGRLSKFE---LAHGG-TLFLEKVEYL--------SVELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (639)
T ss_pred HCCCC-CCCCCCCCCCHHH---CCCCC-EEEECCHHHC--------CHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEE
T ss_conf 73877-6764346686244---03698-2884672649--------9999999999986593785699946664279997
Q ss_pred EECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 74489999973001---113202311111577767899999997898654149610158999998633320245767477
Q gi|254780877|r 313 ATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDK 389 (853)
Q Consensus 313 aTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDK 389 (853)
||+.+- ...++.. ..|--|+....|.=|+--+-.+=+.-+...| .-.++.++-+...+.+.
T Consensus 463 at~~~l-~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~---------------l~~~~~~~~~~~~ls~~ 526 (639)
T PRK11388 463 TTTADL-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNK---------------LRSLEKRFSTRLKIDDD 526 (639)
T ss_pred ECCHHH-HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHH---------------HHHHHHHCCCCCCCCHH
T ss_conf 364508-99987498549999876744105733232534399999999---------------99999971999998999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 89999999998754102221457887999997
Q gi|254780877|r 390 AIDLMDEASARVRMQIDTKPEVLDELDRRIIC 421 (853)
Q Consensus 390 AIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~ 421 (853)
|. ..+..+.+|-.+.++++-+.+
T Consensus 527 a~---------~~L~~y~WPGNvrEL~nvl~~ 549 (639)
T PRK11388 527 AL---------ARLVSYRWPGNDFELRSVIEN 549 (639)
T ss_pred HH---------HHHHCCCCCCHHHHHHHHHHH
T ss_conf 99---------999728999799999999999
No 260
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.11 E-value=0.00017 Score=55.46 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=113.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCC
Q ss_conf 29853333357899999996336--7778668952887407779999999873489984445743788731354217454
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKF 251 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~ 251 (853)
...+|.+||+...++++++..-| .....+++.||+|+||.-++..+-+.=. -++.-.+.+|-+++-..
T Consensus 200 ~~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~~S~-------R~~~pFv~vnC~alp~~--- 269 (513)
T PRK10820 200 VSAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHLASP-------RAKKPYLALNCASIPED--- 269 (513)
T ss_pred CCCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC-------CCCCCCEEEECCCCCHH---
T ss_conf 16877751089999999999999859899889989898249999999996688-------78998268889989967---
Q ss_pred CCHHHHHH--------HHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEE
Q ss_conf 20245458--------99999986079976999636277302666554335888876531246-------------6048
Q gi|254780877|r 252 RGEFEERL--------KSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG-------------ELHC 310 (853)
Q Consensus 252 rg~~e~r~--------~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG-------------~l~~ 310 (853)
.+|..| +++++ .++|. -||+|||+.+ +.+.-.-|--.|..| ++|+
T Consensus 270 --l~eseLFG~a~~~~~G~fe---~A~gG-TLfLdEI~~l--------~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRi 335 (513)
T PRK10820 270 --AVESELFGHAPEGKKGFFE---QANGG-SVLLDEIGEM--------SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 (513)
T ss_pred --HHHHHHCCCCCCCCCCCEE---ECCCC-EEEEECHHHC--------CHHHHHHHHHHHHCCEEEECCCCCEEEEEEEE
T ss_conf --8999863876668897557---85898-8999783659--------99999999999868979965998535677899
Q ss_pred EEEECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 9974489999973001---1132023111115777678999999978986541496101589999986333202-45767
Q gi|254780877|r 311 IGATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYI-TDRFL 386 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi-~~r~l 386 (853)
|+||+.+=- +.++.. ..|--|+..+.+.=|.--+-.+=+--+...| .-.++.+|= +-..+
T Consensus 336 IaaT~~dL~-~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~f---------------l~~~~~~~g~~~~~l 399 (513)
T PRK10820 336 ICATQKNLV-ELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELF---------------VARFADEQGVPRPKL 399 (513)
T ss_pred EECCCHHHH-HHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHH---------------HHHHHHHCCCCCCCC
T ss_conf 962653099-9987298508899986167255888344655699999999---------------999999759998984
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 47789999999998754102221457887999997
Q gi|254780877|r 387 PDKAIDLMDEASARVRMQIDTKPEVLDELDRRIIC 421 (853)
Q Consensus 387 PDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~ 421 (853)
...|. -.+.++.+|-.+.++++.+.+
T Consensus 400 s~~a~---------~~L~~y~WPGNVREL~n~ier 425 (513)
T PRK10820 400 SADLS---------TVLTRYGWPGNVRQLKNAIYR 425 (513)
T ss_pred CHHHH---------HHHHHCCCCCHHHHHHHHHHH
T ss_conf 79999---------999708999799999999999
No 261
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=2e-05 Score=62.96 Aligned_cols=162 Identities=18% Similarity=0.269 Sum_probs=94.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHH-----------------HCCCEEEEEEH-HHHHCCCCCCCHHHHHHHHH
Q ss_conf 6689528874077799999998734899844-----------------45743788731-35421745420245458999
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPES-----------------LKGKRLMALDM-GALIAGAKFRGEFEERLKSL 262 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~-----------------l~~~~i~~ld~-~~l~ag~~~rg~~e~r~~~i 262 (853)
--++.|++|+||++++..+|+.+.-.+ |.. -.|..+++-+- +.-| + =+.++.+
T Consensus 24 A~Lf~G~~G~GK~~lA~~~A~~LlC~~-~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I-----~---IdqIR~l 94 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAFLLCEA-PQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPI-----K---VDQVREL 94 (328)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCC-----C---HHHHHHH
T ss_conf 464479998679999999999984899-999899988889999875899987998426667769-----7---9999999
Q ss_pred HHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECC
Q ss_conf 9998607---9976999636277302666554335888876531246604899744899999730011132023111115
Q gi|254780877|r 263 LCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVG 339 (853)
Q Consensus 263 ~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~ 339 (853)
++++..+ .+.-|..||+.|.+ +..|||-|-=.|..--=.++---..+...+-. |.+-.|=|.+...
T Consensus 95 ~~~~~~~~~~g~~KV~iI~~Ae~m--------~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lL---pTI~SRCq~~~~~ 163 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAM--------NRNAANALLKSLEEPSGQTVLLLISHQPSRLL---PTIKSRCQQLACP 163 (328)
T ss_pred HHHHHHCCCCCCCEEEEEEHHHHH--------CHHHHHHHHHHHHCCCCCEEEEEEECCHHHCH---HHHHHCCEEEECC
T ss_conf 999831766789579995028773--------89999999998507898759998609934482---5887414133489
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 777678999999978986541496101589999986333202457674778999999
Q gi|254780877|r 340 EPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 (853)
Q Consensus 340 Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDe 396 (853)
.|+.++....|..-.+ ....+....++.+|.- -|.+|+.+.++
T Consensus 164 ~p~~e~~~~~L~~~~~--------~~~~~~a~~ll~la~G------~p~~A~~l~~~ 206 (328)
T PRK05707 164 LPSNEPSLQWLQQALP--------ESDAEERIELLTLAAG------SPLRALQLHAQ 206 (328)
T ss_pred CCCHHHHHHHHHHHCC--------CCCHHHHHHHHHHCCC------CHHHHHHHHCC
T ss_conf 9899999999997556--------5578999999997499------99999987486
No 262
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.11 E-value=7.1e-05 Score=58.59 Aligned_cols=198 Identities=17% Similarity=0.359 Sum_probs=115.7
Q ss_pred HHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC--CCCCCCCCCHHHHCCCC
Q ss_conf 47767459489999-9999998741012365665128987267861688999999987237--76530022447740345
Q gi|254780877|r 565 EISKSVIGQSAAVE-SVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFD--DENSMIRIDMSEYMEKH 641 (853)
Q Consensus 565 ~l~~~v~gq~~ai~-~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~--~~~~lir~dMsey~e~~ 641 (853)
....-|+|...... +.+.++ + .+|.++---+++.|++|+|||.|..+++.++.. .+..++-+...+|+...
T Consensus 117 TFdnFVvG~sN~lA~aAA~~V--a----~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~ 190 (447)
T PRK00149 117 TFDNFVVGKSNRLAHAAALAV--A----ENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDF 190 (447)
T ss_pred CCCCCEECCCCHHHHHHHHHH--H----HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHH
T ss_conf 032622269859999999999--8----3767677855897799887889999999999985899728995499999999
Q ss_pred CCCHHHCCCCHHCCCCCCCCCCHHHHC--CCCCEEEEHHHHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEEC
Q ss_conf 320130477112035667742113221--56410220214414--98999999998404578879997783033155954
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEGGALTEAVRR--HPYQVVLFDEIEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMT 717 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~gg~Lte~vr~--~P~sVil~DEiEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~T 717 (853)
. +.|-. +. ++..|+ +-.-|+|+|.|.-- ....+.-|+++|+. |.++ +--||+|
T Consensus 191 v-~al~~-----------~~-~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~--l~~~--------~kqiv~t 247 (447)
T PRK00149 191 V-KALRN-----------NA-MEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNA--LHEN--------NKQIVIT 247 (447)
T ss_pred H-HHHHC-----------CC-HHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHH--HHHC--------CCEEEEE
T ss_conf 9-99851-----------86-99999999728854321488860557799999999999--9984--------9968995
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC--CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 851268764032679999999998628857726668--158628899899999999999999999985798999988999
Q gi|254780877|r 718 SNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD--EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853)
Q Consensus 718 sN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid--~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853)
|.---..+. .|.+.+..|+. -++...|.+.+....|+..... ..+ +.++++++
T Consensus 248 sd~~P~~l~----------------~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~-------~~~--~~l~~~v~ 302 (447)
T PRK00149 248 SDRPPKELE----------------GLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAE-------EEG--INLPNEVL 302 (447)
T ss_pred CCCCHHHCC----------------CCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH-------HCC--CCCCHHHH
T ss_conf 788967656----------------51177886763762651059999999999999999-------728--99998999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 999970898220621579999987
Q gi|254780877|r 796 DWLSCRGYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 796 ~~l~~~~~~~~~GaR~l~r~i~~~ 819 (853)
+||+++- ..-.|.|...+.+.
T Consensus 303 ~~iA~~~---~~nvR~LeGal~~l 323 (447)
T PRK00149 303 EFIAKRI---RSNIRELEGALNRL 323 (447)
T ss_pred HHHHHHC---CCCHHHHHHHHHHH
T ss_conf 9999712---68899999999999
No 263
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.10 E-value=2.7e-06 Score=70.07 Aligned_cols=110 Identities=21% Similarity=0.267 Sum_probs=61.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEE-E--EEEHHHHHCCCC-C---CCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 6689528874077799999998734899844457437-8--873135421745-4---2024545899999986079976
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRL-M--ALDMGALIAGAK-F---RGEFEERLKSLLCEIRSEDGEI 273 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i-~--~ld~~~l~ag~~-~---rg~~e~r~~~i~~~~~~~~~~~ 273 (853)
|++|.|+||||||++++.+|...-.. -.+| + .++...|+ |+. + .|+|+=+--.+. + -
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~-------~~~i~~~~~~~~~Dl~-G~~~~~~~~~~~~~~~G~l~-------~-~ 64 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLD-------FRRIQFTPDLLPSDIT-GTEVYDQKTREFEFRPGPIF-------A-N 64 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCC-------CEEEEECCCCCCCCCC-CCEEECCCCCEEEEECCCCC-------C-C
T ss_conf 98789899876999999999995998-------1688833776700036-84542378740898457310-------3-7
Q ss_pred EEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEEEEEECHHHHHHHHHCCHHHHHCCC
Q ss_conf 9996362773026665543358888765312466-------------048997448999997300111320231
Q gi|254780877|r 274 ILFIDELHVLVGAGKTDGAMDASNLLKPSLARGE-------------LHCIGATTLDEYRKYIEKDPALARRFQ 334 (853)
Q Consensus 274 ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~-------------l~~IgaTT~~Eyrk~iEkD~Al~RRFq 334 (853)
|+|+|||+..= -++-|.|-+.|..+. +++|+|.-|.||.-..+=++||..||=
T Consensus 65 vl~lDEin~a~--------~~v~~~Ll~~l~er~v~~~g~~~~~p~~f~viAt~NP~e~~G~~~L~~al~dRF~ 130 (131)
T pfam07726 65 VLLADEINRAP--------PKTQSALLEAMQERQVTIGGETHPLPEPFFVLATQNPIEQEGTYPLPEAQLDRFL 130 (131)
T ss_pred CEEEEHHHCCC--------HHHHHHHHHHHHCEEEEECCEEEECCCCEEEEECCCCCCCCCCEECCHHHHCCCC
T ss_conf 05640120399--------8999999976326499779988527998499971698755576449988965615
No 264
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.09 E-value=6.7e-05 Score=58.78 Aligned_cols=199 Identities=22% Similarity=0.283 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC--------C
Q ss_conf 333357899999996336--777866895288740777999999987348998444574378873135421--------7
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA--------G 248 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a--------g 248 (853)
-+||+..-++++.+.+.+ .+..|+++.||+||||.-++..+-+.= .-+++-++.+|-+++-. |
T Consensus 187 elIG~S~~m~~l~~~i~~vA~sd~pVLI~GEtGTGKelvAr~IH~~S-------~R~~~Pfv~vNCaalpe~l~EseLFG 259 (510)
T PRK05022 187 EMIGQSPAMQQLKKEIEVVAASDLNVLITGETGVGKELVARAIHQAS-------PRAVKPLVYLNCAALPESLAESELFG 259 (510)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC-------CCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 75208999999999999996899988988989813999999999668-------87899857888999985678998659
Q ss_pred CCCCCHHHHHH---HHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEEEE
Q ss_conf 45420245458---999999860799769996362773026665543358888765312466-------------04899
Q gi|254780877|r 249 AKFRGEFEERL---KSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGE-------------LHCIG 312 (853)
Q Consensus 249 ~~~rg~~e~r~---~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~-------------l~~Ig 312 (853)
..+|.|-.-. .+.+ ..++|. .||+|||..+ +.++-.-|--.|..|+ +|+|+
T Consensus 260 -h~kGaFtGA~~~r~G~f---e~A~gG-TLfLDEI~~L--------pl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIA 326 (510)
T PRK05022 260 -HVKGAFTGAISNRSGKF---ELADGG-TLFLDEIGEL--------PLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 326 (510)
T ss_pred -CCCCCCCCCCCCCCCCE---EECCCC-EEEEECHHHC--------CHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEE
T ss_conf -77788688655678810---177898-7987574549--------9999999999984795885589946666689996
Q ss_pred EECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCCCHH
Q ss_conf 74489999973001---113202311111577767899999997898654149610158999998633320-24576747
Q gi|254780877|r 313 ATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY-ITDRFLPD 388 (853)
Q Consensus 313 aTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY-i~~r~lPD 388 (853)
||.-+ -.+-++.- .-|--|...+.|.=|.--+-.+=+.-+...| .-..+.|| .+...+..
T Consensus 327 ATnrd-L~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~F---------------Le~~~~~~g~~~~~ls~ 390 (510)
T PRK05022 327 ATNRD-LREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYF---------------LEQNRLRLGLSSLRLSP 390 (510)
T ss_pred ECCCC-HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHH---------------HHHHHHHCCCCCCCCCH
T ss_conf 07835-999988396389999876204034808655554099999999---------------99999982989898889
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 7899999999987541022214578879999974
Q gi|254780877|r 389 KAIDLMDEASARVRMQIDTKPEVLDELDRRIICL 422 (853)
Q Consensus 389 KAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l 422 (853)
.|+..| ..+.+|-.+.++++.+.+.
T Consensus 391 eAl~~L---------~~Y~WPGNVRELenvIeRA 415 (510)
T PRK05022 391 DAQAAL---------LQYDWPGNVRELEHVISRA 415 (510)
T ss_pred HHHHHH---------HCCCCCCHHHHHHHHHHHH
T ss_conf 999999---------7099997899999999999
No 265
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=98.08 E-value=4.1e-05 Score=60.48 Aligned_cols=143 Identities=26% Similarity=0.407 Sum_probs=97.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC-CCCCCHH-HCCCCHHCCC----CCCC---------
Q ss_conf 65128987267861688999999987237765300224477403-4532013-0477112035----6677---------
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME-KHSVSRL-IGSPPGYVGY----EEGG--------- 660 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e-~~~vs~L-iGappGYvG~----~~gg--------- 660 (853)
|---.+||.||.|+||..+|..+|+.||-.... -.+.+. -++.-++ -|+=|.|.=. ..++
T Consensus 12 r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~-----~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~~ 86 (216)
T TIGR00678 12 RLAHAYLFTGPEGVGKELLALALAKALLCEPRG-----GGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAEG 86 (216)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHH
T ss_conf 788612544488874899999999998077857-----788888588899987079982378742347777776458976
Q ss_pred ------------CCCHHHHC-----------CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEEC
Q ss_conf ------------42113221-----------5641022021441498999999998404578879997783033155954
Q gi|254780877|r 661 ------------ALTEAVRR-----------HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMT 717 (853)
Q Consensus 661 ------------~Lte~vr~-----------~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~T 717 (853)
+-++.||. .+|=||++|..|+.++.==|.||-.|+|=- .+|+|||.
T Consensus 87 ~~g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~AANALLKtLEEPp-----------~~t~fiL~ 155 (216)
T TIGR00678 87 EEGSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-----------PNTLFILI 155 (216)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHEECCC-----------CCEEEEEE
T ss_conf 2564211367878727899999998606421475179976732325898986510101279-----------87079885
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 85126876403267999999999862885772666815862889989999999999
Q gi|254780877|r 718 SNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQ 773 (853)
Q Consensus 718 sN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~ 773 (853)
|+-- +++. .-|=...|. .++.|.|++.+++.+++..+
T Consensus 156 ~~~~------DP~~------------lLpTI~SRC-q~~~f~~l~~~~~~~~L~~~ 192 (216)
T TIGR00678 156 THSP------DPER------------LLPTIRSRC-QVLPFPPLSEEALLQWLIEQ 192 (216)
T ss_pred CCCC------CHHH------------HCCCCCCCE-EEEEECCCCHHHHHHHHHHC
T ss_conf 0888------8433------------221110320-15862599889999999970
No 266
>PRK06526 transposase; Provisional
Probab=98.07 E-value=1.2e-05 Score=64.86 Aligned_cols=103 Identities=20% Similarity=0.349 Sum_probs=69.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH-CCCCCEEEEHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322-15641022021
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR-RHPYQVVLFDE 678 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr-~~P~sVil~DE 678 (853)
..+|+||||||||.||.+|+.......-...-+.|++..+.-..++--| .+...++ -..+.++.+||
T Consensus 100 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~g------------~~~~~~~~l~~~dLLIiDe 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAG------------RLQDELVKLGRIPLLIVDE 167 (254)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCC------------CHHHHHHHHHCCCEEEEEC
T ss_conf 7899899998689999999999998699679987799999999988558------------0999999851368776502
Q ss_pred HHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf 4414--9899999999840457887999778303315595485126876
Q gi|254780877|r 679 IEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL 725 (853)
Q Consensus 679 iEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~ 725 (853)
+=-. .+.--++|+|++++=+ ++ .=+|+|||++...-
T Consensus 168 ~g~~~~~~~~a~~lf~li~~Ry-----e~------~S~IiTSn~~~~~W 205 (254)
T PRK06526 168 VGYIPFEAEAANLFFQLVSSRY-----ER------ASLIVTSNKPFGRW 205 (254)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----CC------CCEEEECCCCHHHH
T ss_conf 1364478899999999999997-----45------88676658986688
No 267
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.07 E-value=0.00021 Score=54.74 Aligned_cols=214 Identities=23% Similarity=0.362 Sum_probs=139.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCC
Q ss_conf 59489999999999874101236566512898726786168899999998723776530022447740345320130477
Q gi|254780877|r 571 IGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSP 650 (853)
Q Consensus 571 ~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGap 650 (853)
++++-.+......+.+. ...+-|+ |..|-||+||-.+|+++-+.-- .+..++-+|+.-+.+.+.-|-|+|--
T Consensus 316 ~~~d~s~a~l~rk~~rv----~~~~~pv---ll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERV----AATDLPV---LLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred CCCCHHHHHHHHHHHHH----HHCCCCE---EECCCCCHHHHHHHHHHHHCCC-CCCCEEEEEECCCHHHHHHHHHHCCC
T ss_conf 45578899999999887----6247876---8538765568999999985365-56983799850344776467774457
Q ss_pred CHH-CC-CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCC--CEEECCCCEEEECCCHHHHHHH
Q ss_conf 112-03-5667742113221564102202144149899999999840457887999--7783033155954851268764
Q gi|254780877|r 651 PGY-VG-YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQG--RTVDFRNTLIIMTSNLGAEYLI 726 (853)
Q Consensus 651 pGY-vG-~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G--~~v~f~n~iii~TsN~G~~~~~ 726 (853)
||= -| |-+| . +..+.+-+-.-+++|||.-..-..+.-||+||.||.+|--.| .+||++ ||.+|+--=..+.
T Consensus 388 ~GafTga~~kG-~-~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir---vi~ath~dl~~lv 462 (606)
T COG3284 388 AGAFTGARRKG-Y-KGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAATHRDLAQLV 462 (606)
T ss_pred CCCCCCCHHCC-C-CCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEECCCCCCEEEEEE---EEECCCCCHHHHH
T ss_conf 65643300106-6-55410157876089876114189999999998618252358852157799---9834675799998
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHCCCCC-EEECCCCCHHH--HHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
Q ss_conf 0326799999999986288577266681-58628899899--99999999999999998579899998899999997089
Q gi|254780877|r 727 EDGDSVHDKVMGIVRSAFKPEFLNRLDE-IILFEKLRKED--MAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGY 803 (853)
Q Consensus 727 ~~~~~~~~~~~~~l~~~f~peflnRid~-iv~F~~l~~~~--~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~ 803 (853)
+ ...|+-.+.-|+.. +|..-||.+.. ..-+..+ ..+ +..-.+.+++.+...|.. |
T Consensus 463 ~-------------~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~-----~~~--~~~~~~~l~~~~~~~l~~--~ 520 (606)
T COG3284 463 E-------------QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRI-----LKR--ENDWRLQLDDDALARLLA--Y 520 (606)
T ss_pred H-------------CCCCHHHHHHHHCCEEECCCCHHCCCCCHHHHHHH-----HHH--CCCCCCCCCHHHHHHHHH--C
T ss_conf 7-------------59714878887447155068611046657899999-----987--268775689999999985--7
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 8220621579999987
Q gi|254780877|r 804 DPSYGARPLKRVIQRY 819 (853)
Q Consensus 804 ~~~~GaR~l~r~i~~~ 819 (853)
.=--.-|.|..+|+..
T Consensus 521 ~WPGNirel~~v~~~~ 536 (606)
T COG3284 521 RWPGNIRELDNVIERL 536 (606)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 8998289999999999
No 268
>KOG0743 consensus
Probab=98.06 E-value=4e-05 Score=60.61 Aligned_cols=172 Identities=19% Similarity=0.314 Sum_probs=101.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
-+|+-||+|+|||.+--|+|.+| +=.+.-++.++-..-...-+|+=+ ..+.||||++.|
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~dLr~LL~~------------------t~~kSIivIEDI 295 (457)
T KOG0743 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSDLRHLLLA------------------TPNKSILLIEDI 295 (457)
T ss_pred CCEEECCCCCCHHHHHHHHHHHC---CCCEEEEEECCCCCCHHHHHHHHH------------------CCCCCEEEEEEC
T ss_conf 41204799998889999997205---873677440023683899999972------------------899718999612
Q ss_pred HHCC----------HHH--------HHHHHHHHHCCEEECCCCCEEEC-CCCEEEECCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 4149----------899--------99999984045788799977830-3315595485126876403267999999999
Q gi|254780877|r 680 EKAH----------SDV--------HNILLQVLDDGRLTDSQGRTVDF-RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIV 740 (853)
Q Consensus 680 EKah----------~~v--------~~~llqild~G~ltd~~G~~v~f-~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l 740 (853)
+-|- ++- +.=||.-+| |- --+| ..-|||||+|- .
T Consensus 296 Dcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD-Gl-------wSscg~ERIivFTTNh--------~----------- 348 (457)
T KOG0743 296 DCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD-GL-------WSSCGDERIIVFTTNH--------K----------- 348 (457)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHC-CC-------CCCCCCCEEEEEECCC--------H-----------
T ss_conf 4323044345556645467766066477566413-43-------0048873499994687--------1-----------
Q ss_pred HHHCCHHHHC--CCCCEEECCCCCHHHHHHHHHHHHHH-----HHHHHHHCCCEEEECHH-HHHHHHHCCCCCCCCCHHH
Q ss_conf 8628857726--66815862889989999999999999-----99999857989999889-9999997089822062157
Q gi|254780877|r 741 RSAFKPEFLN--RLDEIILFEKLRKEDMAKIVRIQLGR-----VLSLIKERNISMDFDDQ-VIDWLSCRGYDPSYGARPL 812 (853)
Q Consensus 741 ~~~f~pefln--Rid~iv~F~~l~~~~~~~i~~~~l~~-----l~~~l~~~~i~l~~~~~-~~~~l~~~~~~~~~GaR~l 812 (853)
..+-|.++- |+|--|.+.--+...++..+.++|.- +...++.---..+++|+ +-+.+....-|+.--.+.|
T Consensus 349 -EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743 349 -EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred -HHCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf -0068866288752256672669879999999983389887306799998763374689999999863565388999999
Q ss_pred HHHHHHHH
Q ss_conf 99999873
Q gi|254780877|r 813 KRVIQRYI 820 (853)
Q Consensus 813 ~r~i~~~i 820 (853)
.+.+++..
T Consensus 428 v~~l~~~~ 435 (457)
T KOG0743 428 VEALESKK 435 (457)
T ss_pred HHHHHHHH
T ss_conf 99987634
No 269
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.05 E-value=0.0008 Score=50.02 Aligned_cols=168 Identities=24% Similarity=0.368 Sum_probs=70.6
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCC
Q ss_conf 45948999999999987410123656651289872678616889999999872377653002244774034532013047
Q gi|254780877|r 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGS 649 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGa 649 (853)
++|-|.--+.+.+.-.+--.|+ |--..|+-|.-|+||+.|.|++-..+.+..-.+|-++-++. ..=
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~-----pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl---------~~L 127 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGL-----PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL---------ATL 127 (287)
T ss_pred HHCCHHHHHHHHHHHHHHHCCC-----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHH---------HHH
T ss_conf 7273189999999899997288-----65236776377777479999999998741770799768888---------657
Q ss_pred CCHHCCCCCCCCCCHHHHCCCCCEEEE-HHHHHC-CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH---HHH
Q ss_conf 711203566774211322156410220-214414-989999999984045788799977830331559548512---687
Q gi|254780877|r 650 PPGYVGYEEGGALTEAVRRHPYQVVLF-DEIEKA-HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG---AEY 724 (853)
Q Consensus 650 ppGYvG~~~gg~Lte~vr~~P~sVil~-DEiEKa-h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G---~~~ 724 (853)
| .|.+.+|..|.-+|+| |..-=- +.+-+..|=-+||-|. .--..|.+|..|||=- .+.
T Consensus 128 p----------~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-------e~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 128 P----------DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-------EGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred H----------HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCC-------CCCCCEEEEEEECCCCCCCCHH
T ss_conf 9----------9999996188608999567777778138999999853885-------5688707999715875336276
Q ss_pred HHCCHH-----HHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 640326-----79999999998628857726668158628899899999999999
Q gi|254780877|r 725 LIEDGD-----SVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 725 ~~~~~~-----~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
..++.. +..+.+.+.+ -|=.|+.--..|.|-+.++..+|++...
T Consensus 191 ~~dn~~~~~eih~~eaveEKl------SlSDRFGLwL~F~~~~Q~~YL~~V~~~a 239 (287)
T COG2607 191 MKDNEGSTGEIHPSEAVEEKL------SLSDRFGLWLSFYPCDQDEYLKIVDHYA 239 (287)
T ss_pred HHHCCCCCCCCCHHHHHHHHH------CHHHHCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 642778402358067787762------5464234045036878899999999999
No 270
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.05 E-value=5.8e-05 Score=59.30 Aligned_cols=127 Identities=24% Similarity=0.367 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHC
Q ss_conf 99999999998741012365665128987267861688999999987237765300224477403453201304771120
Q gi|254780877|r 575 AAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYV 654 (853)
Q Consensus 575 ~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYv 654 (853)
.|+..+.+-+.... ++...--+++.||.|||||.|+.++|..|-...-..+-+.|++|...-.-+ ++.
T Consensus 139 ~a~~~a~~F~~~y~-----~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s--~~d----- 206 (306)
T PRK08939 139 DALMAALDFLEAYK-----PGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNA--ISD----- 206 (306)
T ss_pred HHHHHHHHHHHHHC-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH--HCC-----
T ss_conf 99999999999737-----698887788989999989999999999999869929998759999999998--648-----
Q ss_pred CCCCCCCCCHHHHCCCCCEEEEHHH--HHCCHHHHHHHHH-HHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHC
Q ss_conf 3566774211322156410220214--4149899999999-84045788799977830331559548512687640
Q gi|254780877|r 655 GYEEGGALTEAVRRHPYQVVLFDEI--EKAHSDVHNILLQ-VLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIE 727 (853)
Q Consensus 655 G~~~gg~Lte~vr~~P~sVil~DEi--EKah~~v~~~llq-ild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~ 727 (853)
+.-..+.+++++-| |++||+| |...+=+-+-+|+ ||+ .|+.. +--.++|||+.-+.+..
T Consensus 207 --~s~~~~i~~~k~~~--vLiLDDiGaE~~t~W~rd~vl~~IL~-~Rm~~---------~lPTffTSN~~~~eLe~ 268 (306)
T PRK08939 207 --GSVKEKIDAVKEAP--VLMLDDIGAEQMSSWVRDEVLGVILQ-YRMQE---------ELPTFFTSNFDFDELEH 268 (306)
T ss_pred --CCHHHHHHHHHCCC--EEEEECCCCCCCCHHHHHHHHHHHHH-HHHHC---------CCCEEEECCCCHHHHHH
T ss_conf --98899999984499--89984446542677789989999999-99974---------99979977999999999
No 271
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.0011 Score=48.82 Aligned_cols=193 Identities=17% Similarity=0.239 Sum_probs=117.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCHHHCC-CE--EEEEE----HHHHH-CCC
Q ss_conf 333357899999996336777866-89528874077799999998734899844457-43--78873----13542-174
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPESLKG-KR--LMALD----MGALI-AGA 249 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~~l~~-~~--i~~ld----~~~l~-ag~ 249 (853)
-|||-+.-++.+.+.+...+=.+. ++.|++||||++++-.+|+.+.....+..... .. -+.++ +...| +|+
T Consensus 18 ~liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~ 97 (363)
T PRK07471 18 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGA 97 (363)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCC
T ss_conf 31681999999999998599764587679998188999999999985799977777678705312587772899995269
Q ss_pred ----------------CCCCHH-HHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC---C
Q ss_conf ----------------542024-54589999998607---997699963627730266655433588887653124---6
Q gi|254780877|r 250 ----------------KFRGEF-EERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR---G 306 (853)
Q Consensus 250 ----------------~~rg~~-e~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar---G 306 (853)
+.+++. =+-+..+...+.-+ .+.-|..||+.|.+ ...++|-|--.|.. .
T Consensus 98 hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~m--------n~~aaNALLK~LEEPP~~ 169 (363)
T PRK07471 98 HGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEM--------NANAANALLKVLEEPPAR 169 (363)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH--------CHHHHHHHHHHHCCCCCC
T ss_conf 998466762001133321244539999999999724852489669998687873--------889999999972158988
Q ss_pred CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 60489974489999973001113202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 307 ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 307 ~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
.+=+..++.++--- +.+-.|-|++.....+.++....| ...+++.++++.+.+++.+|.==
T Consensus 170 t~fiLit~~~~~ll------pTI~SRCq~~~~~~l~~~~~~~~L-------~~~~~~~~~~~~~~~la~~a~Gs------ 230 (363)
T PRK07471 170 SLLLLVSHAPARLL------PTIRSRCRKLRLRPLAPEDVIAAL-------AEAGGPALDDAELAALAALAEGS------ 230 (363)
T ss_pred EEEEEEECCHHHCH------HHHHHHCCCCCCCCCCHHHHHHHH-------HHHCCCCCCHHHHHHHHHHCCCC------
T ss_conf 38998639977777------999973524258995999999999-------98438999989999999975899------
Q ss_pred HHHHHHHHHHHH
Q ss_conf 477899999999
Q gi|254780877|r 387 PDKAIDLMDEAS 398 (853)
Q Consensus 387 PDKAIDllDeA~ 398 (853)
|-+|+.|++.-+
T Consensus 231 ~~~Al~l~~~~~ 242 (363)
T PRK07471 231 VGRALRLAGGDG 242 (363)
T ss_pred HHHHHHHHCCCH
T ss_conf 999998747985
No 272
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.05 E-value=0.00019 Score=55.12 Aligned_cols=124 Identities=28% Similarity=0.375 Sum_probs=79.8
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC----------CCCHHHHC
Q ss_conf 74594899999999998741012365665128987267861688999999987237765300----------22447740
Q gi|254780877|r 569 SVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMI----------RIDMSEYM 638 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~li----------r~dMsey~ 638 (853)
.++|+++++..+...+.... +-|- .+||.||+|+|||.+|.+||+.||+....-. .+.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CCCCCHHHHHHHHHHHHHCC------CCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 64332358999999998658------8876-1003799999789999999999658664334552002244432025688
Q ss_pred CCCCCCHHHCCCCHHCCCCCCC--CCCHHHH-----------CCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCC
Q ss_conf 3453201304771120356677--4211322-----------15641022021441498999999998404578879997
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEGG--ALTEAVR-----------RHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGR 705 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~gg--~Lte~vr-----------~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~ 705 (853)
.+.-|.-+ ++.+ ...+.|| ..++-||++||+|+-+++..|.|+-.+++
T Consensus 75 ---d~lel~~s-------~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe--------- 135 (325)
T COG0470 75 ---DFLELNPS-------DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE--------- 135 (325)
T ss_pred ---CEEEECCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC---------
T ss_conf ---65997732-------13333006999999998604465667726999732032698888767543324---------
Q ss_pred EEECCCCEEEECCCH
Q ss_conf 783033155954851
Q gi|254780877|r 706 TVDFRNTLIIMTSNL 720 (853)
Q Consensus 706 ~v~f~n~iii~TsN~ 720 (853)
.-.||.|||++|-
T Consensus 136 --p~~~~~~il~~n~ 148 (325)
T COG0470 136 --PPKNTRFILITND 148 (325)
T ss_pred --CCCCEEEEEEECC
T ss_conf --8887169997498
No 273
>KOG0734 consensus
Probab=98.04 E-value=5.2e-05 Score=59.67 Aligned_cols=126 Identities=26% Similarity=0.402 Sum_probs=67.8
Q ss_pred HHHCCHHHHHHHHHHHHH-------HHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 674594899999999998-------7410123656651289872678616889999999872377653002244774034
Q gi|254780877|r 568 KSVIGQSAAVESVSNALR-------RFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK 640 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~-------~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~ 640 (853)
+-|-|-|+|-..+-..+- -.+.|=+ =|-|+ |++||+|+|||-||+++|-.- .-.+..---|||-|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGK---LPKGV-LLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFdE- 375 (752)
T KOG0734 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGK---LPKGV-LLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFDE- 375 (752)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCC---CCCCE-EEECCCCCCHHHHHHHHHCCC---CCCEEECCCCCHHH-
T ss_conf 02147278999999999986090876431475---88853-876899975569999860556---89747416620445-
Q ss_pred CCCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCEEEEHHHHHC----CHH----HHHHHHHHHH--CCEEECCCCCEEE
Q ss_conf 5320130477112035667--74211322156410220214414----989----9999999840--4578879997783
Q gi|254780877|r 641 HSVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQVVLFDEIEKA----HSD----VHNILLQVLD--DGRLTDSQGRTVD 708 (853)
Q Consensus 641 ~~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sVil~DEiEKa----h~~----v~~~llqild--~G~ltd~~G~~v~ 708 (853)
-|||-+.- --|-.+-|.+--|||+.|||+-- .|. --+.+=|+|- ||. +-|.|
T Consensus 376 -----------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF-~qNeG---- 439 (752)
T KOG0734 376 -----------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF-KQNEG---- 439 (752)
T ss_pred -----------HHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCC----
T ss_conf -----------42201489999999998734985999720022056678627789998999999984286-76886----
Q ss_pred CCCCEEEECCCH
Q ss_conf 033155954851
Q gi|254780877|r 709 FRNTLIIMTSNL 720 (853)
Q Consensus 709 f~n~iii~TsN~ 720 (853)
.|||--+|.
T Consensus 440 ---iIvigATNf 448 (752)
T KOG0734 440 ---IIVIGATNF 448 (752)
T ss_pred ---EEEEECCCC
T ss_conf ---699951687
No 274
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=98.04 E-value=0.0012 Score=48.47 Aligned_cols=233 Identities=27% Similarity=0.420 Sum_probs=155.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH----HHCCCC
Q ss_conf 7767459489999999999874101236566512898726786168899999998723776530022447----740345
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMS----EYMEKH 641 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMs----ey~e~~ 641 (853)
=...+||.--|...|-++|-|.- +.+| +.|-.|=||+||=-.|++|-++=-=....||-+||. |..|
T Consensus 133 ~~~~liG~aPAMQevfR~igRL~------~~~l-~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~E-- 203 (471)
T TIGR01818 133 DSAELIGEAPAMQEVFRAIGRLS------RSDL-SVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIE-- 203 (471)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHC------CCCC-EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHH--
T ss_conf 56212368851689999999751------6960-58885575775899999840137555777327302322246655--
Q ss_pred CCCHHHCCCCHHCCCCCCCCCCHHHHCC-------CCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEE
Q ss_conf 3201304771120356677421132215-------641022021441498999999998404578879997783033155
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEGGALTEAVRRH-------PYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLI 714 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~gg~Lte~vr~~-------P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~ii 714 (853)
|-|+| |+. |--|.|..++ --.-++||||=-..-+++.=||.||.+|..+-=.|++.==.+.=|
T Consensus 204 --SELFG-------HEk-GAFTGA~~~~~GRFEQA~GGTLFLDEIGDMPl~~QTRLLRVL~~G~f~rVGG~~p~k~DVRi 273 (471)
T TIGR01818 204 --SELFG-------HEK-GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDLQTRLLRVLADGEFYRVGGRTPIKVDVRI 273 (471)
T ss_pred --HHHCC-------CCC-CCCCCCCCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEE
T ss_conf --43214-------565-30001025567772534888210102167877687779886407865772682024550466
Q ss_pred EECCCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCEEECC--CCC--HHHHHHHHHHHHHHHHHHHHHCCCEE-
Q ss_conf 95485126876403267999999999-8628857726668158628--899--89999999999999999998579899-
Q gi|254780877|r 715 IMTSNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEIILFE--KLR--KEDMAKIVRIQLGRVLSLIKERNISM- 788 (853)
Q Consensus 715 i~TsN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~iv~F~--~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l- 788 (853)
|.-|| +.+...+ .+.||-+++-|++ ||..+ ||- .+|+.++++.+|..-.+.+ ++..
T Consensus 274 ~AATh--------------q~Le~lv~~G~FReDLfhRL~-Vi~i~lPpLrER~eDi~~L~rhFL~~a~~~l---~~~~k 335 (471)
T TIGR01818 274 VAATH--------------QDLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLALAAKEL---DVEPK 335 (471)
T ss_pred EECCC--------------HHHHHHHHCCCCHHHHHHHHC-EEEECCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCCC
T ss_conf 73366--------------568999655881355555123-3462168721226689999999999988742---86511
Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
Q ss_conf 998899999997089822062157999998733499999970868897889999989948
Q gi|254780877|r 789 DFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDDNL 848 (853)
Q Consensus 789 ~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~~~~ 848 (853)
.+++.+.++|-+ |+=--..|.|...... |- -+-+++.|.++.-+.+|
T Consensus 336 ~L~~~~~~~L~~--~~WPGNVR~LEN~cR~---------l~--~la~~~~v~~~d~~~eL 382 (471)
T TIGR01818 336 LLSPEALEALKR--YDWPGNVRELENVCRR---------LT--VLASGDEVLVSDLPAEL 382 (471)
T ss_pred CCCHHHHHHHHH--CCCCCCHHHHHHHHHH---------HH--HHCCCCEEEEEECCHHH
T ss_conf 348899999972--5889852457789999---------98--73467646777757655
No 275
>KOG0739 consensus
Probab=98.03 E-value=9.8e-05 Score=57.42 Aligned_cols=129 Identities=25% Similarity=0.433 Sum_probs=75.9
Q ss_pred HCCHHHHHHHHHHHHHHH--HCC-CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH
Q ss_conf 459489999999999874--101-23656651289872678616889999999872377653002244774034532013
Q gi|254780877|r 570 VIGQSAAVESVSNALRRF--RAG-LQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~--~~g-l~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L 646 (853)
|-|-+.|-+++-.++.+. .-. +...++|---+|+.||+|+||++|||++|..- ..-+..+--|+. ||+-
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDL-----vSKW 206 (439)
T KOG0739 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL-----VSKW 206 (439)
T ss_pred HCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC---CCCEEEEEHHHH-----HHHH
T ss_conf 01405689998754350002535415887754257886799975779999987414---770687301788-----9987
Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHC-----------CHHHH-HHHHHHHHCCEEECCCCCEEECCCCEE
Q ss_conf 047711203566774211322156410220214414-----------98999-999998404578879997783033155
Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKA-----------HSDVH-NILLQVLDDGRLTDSQGRTVDFRNTLI 714 (853)
Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKa-----------h~~v~-~~llqild~G~ltd~~G~~v~f~n~ii 714 (853)
.|-.--.| -.|-|.-|.+--|+|+.|||+-. ...+- .+|.|+- |.=.|+.| .++
T Consensus 207 mGESEkLV-----knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq--GVG~d~~g-------vLV 272 (439)
T KOG0739 207 MGESEKLV-----KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ--GVGNDNDG-------VLV 272 (439)
T ss_pred HCCHHHHH-----HHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCCCC-------EEE
T ss_conf 32179999-----99999987349947986344443268877711777777778887640--66658886-------489
Q ss_pred EECCCH
Q ss_conf 954851
Q gi|254780877|r 715 IMTSNL 720 (853)
Q Consensus 715 i~TsN~ 720 (853)
+-.+|+
T Consensus 273 LgATNi 278 (439)
T KOG0739 273 LGATNI 278 (439)
T ss_pred EECCCC
T ss_conf 723788
No 276
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.02 E-value=1.6e-05 Score=63.83 Aligned_cols=104 Identities=26% Similarity=0.409 Sum_probs=65.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC-CCCCEEEEHH
Q ss_conf 898726786168899999998723776530022447740345320130477112035667742113221-5641022021
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR-HPYQVVLFDE 678 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~-~P~sVil~DE 678 (853)
+++|.||||||||.||.+++..+.....+..-+.++++.+.-..++--| .+.+.+++ .-..|+++||
T Consensus 49 Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~------------~~~~~l~~~~~~dlLIiDD 116 (178)
T pfam01695 49 NLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRARGDG------------RLARTLQRLAKADLLILDD 116 (178)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCC------------CHHHHHHHHHCCCEEEEEH
T ss_conf 6899899998789999999999998698599996167999999875267------------4999999962589788720
Q ss_pred HHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHH
Q ss_conf 4414--98999999998404578879997783033155954851268764
Q gi|254780877|r 679 IEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLI 726 (853)
Q Consensus 679 iEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~ 726 (853)
+=.. .+.-.+.|++++++-. ++ + + +|.|||+.-....
T Consensus 117 lG~~~~s~~~~~~lf~li~~Ry-----e~----~-s-tIiTSN~~~~~W~ 155 (178)
T pfam01695 117 IGYLPLSQEAAHLLFELISDRY-----ER----R-S-TILTSNLPFGEWH 155 (178)
T ss_pred HCCCCCCHHHHHHHHHHHHHHH-----CC----C-C-EEEECCCCHHHHH
T ss_conf 0165689899999999999997-----56----8-8-6877689978998
No 277
>PRK09087 hypothetical protein; Validated
Probab=98.00 E-value=8.3e-05 Score=58.01 Aligned_cols=170 Identities=21% Similarity=0.326 Sum_probs=95.5
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCE
Q ss_conf 56651289872678616889999999872377653002244774034532013047711203566774211322156410
Q gi|254780877|r 594 PQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQV 673 (853)
Q Consensus 594 ~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sV 673 (853)
|+-|...+.+.||+|+|||.|+.+.++.- ++ +.++...... +.........
T Consensus 40 ~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~----~a-~~~~~~~~~~------------------------~~~~~~~~~~ 90 (226)
T PRK09087 40 PNWPSPVVVLAGPVGSGKTHLASIWREKA----DA-LLVHPNEIGS------------------------DAANAAAERP 90 (226)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH----CC-EEECHHHCCH------------------------HHHHHHCCCC
T ss_conf 26777758998999998869999999980----99-6836687474------------------------6676532798
Q ss_pred EEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC
Q ss_conf 22021441498999999998404578879997783033155954851268764032679999999998628857726668
Q gi|254780877|r 674 VLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD 753 (853)
Q Consensus 674 il~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid 753 (853)
+++|++++..-+ -..|+.++. .+--+++-++|||+.....+.- --|.+..|+-
T Consensus 91 ~~idd~d~~~~d-Ee~LFhl~N----------~~~~~~~~LLlts~~~p~~l~~----------------~L~DL~SRL~ 143 (226)
T PRK09087 91 VLIEDIDAGGFD-ETGLFHLIN----------SVRQAGTSLLMTSRLWPSAWNV----------------KLPDLKSRLK 143 (226)
T ss_pred EEEECCCCCCCC-HHHHHHHHH----------HHHHCCCEEEEECCCCHHHCCC----------------CCHHHHHHHH
T ss_conf 899748777747-899999999----------9985398799988989566676----------------2468999985
Q ss_pred --CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH----------HHHH
Q ss_conf --1586288998999999999999999999857989999889999999708982206215799999----------8733
Q gi|254780877|r 754 --EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ----------RYIQ 821 (853)
Q Consensus 754 --~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~----------~~i~ 821 (853)
-++...+.+.+.+..++.+ +++.+| +.+++.+++||+.+. ++.| ..+..+++ +.|.
T Consensus 144 ~~~~~~I~~pdD~ll~~~L~k-------~~~~r~--l~l~~~v~~yll~r~-~Rs~--~~l~~~l~~LD~~SL~~kr~IT 211 (226)
T PRK09087 144 AATVVEIGEPDDALLSGVIFK-------LFADRQ--LYVEPHVVYYLVSRM-ERSL--FAAQTIVERLDRLALERKSRIT 211 (226)
T ss_pred CCEEEEECCCCHHHHHHHHHH-------HHHHCC--CCCCHHHHHHHHHHC-CCCH--HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 785798359998999999999-------987576--578888999999845-8899--9999999999999998189998
Q ss_pred HHHHHHHHCC
Q ss_conf 4999999708
Q gi|254780877|r 822 NPLAERVLSQ 831 (853)
Q Consensus 822 ~~la~~il~~ 831 (853)
-|+++.+|..
T Consensus 212 iplikevL~~ 221 (226)
T PRK09087 212 RALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHH
T ss_conf 9999999985
No 278
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.99 E-value=0.0005 Score=51.69 Aligned_cols=114 Identities=25% Similarity=0.449 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHH--------------HH--HCCCCC-HHHCCCEE
Q ss_conf 8533333578999999963-367778668952887407779999999--------------87--348998-44457437
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVL-SRRTKNNPVLIGDPGVGKTAIIEGLAS--------------RI--INGDIP-ESLKGKRL 237 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL-~r~~k~n~~lvGe~GvGKtaive~la~--------------~i--~~~~vp-~~l~~~~i 237 (853)
.+.-|.|.+. .+|.++|= +..+ |.+|+|+||+|||-+.+.|.- +| +.|..+ ..+-..|=
T Consensus 189 D~~dv~Gq~~-akraleIAAAGgH--nlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~~~~rP 265 (506)
T PRK09862 189 DLSDVVGQEQ-GKRGLEITAAGGH--NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRP 265 (506)
T ss_pred CHHHHCCCHH-HHHHHHHHHCCCC--CEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7565369799-9999999744688--659876999459899977512389989899999999998718987777546685
Q ss_pred -----EEEEHHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf -----88731354217454--20245458999999860799769996362773026665543358888765312466048
Q gi|254780877|r 238 -----MALDMGALIAGAKF--RGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHC 310 (853)
Q Consensus 238 -----~~ld~~~l~ag~~~--rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~ 310 (853)
.+....+|+.|-+. .| |+.-+. +=|||.||+.-. +-++-+.|...|..|.+++
T Consensus 266 fR~PHHs~S~~aliGGG~~~~PG-----------EISLAH-~GVLFLDElpEF--------~r~vLe~LRqPLE~g~I~I 325 (506)
T PRK09862 266 FRSPHHSASLTAMVGGGAIPGPG-----------EISLAH-NGVLFLDELPEF--------ERRTLDALREPIESGQIHL 325 (506)
T ss_pred EECCCCCCCHHHHHCCCCCCCCC-----------CEEECC-CCEEEECCHHCC--------CHHHHHHHHHHHCCCEEEE
T ss_conf 03788765476663799999997-----------222135-757884550006--------8889998776224775999
Q ss_pred EE
Q ss_conf 99
Q gi|254780877|r 311 IG 312 (853)
Q Consensus 311 Ig 312 (853)
-=
T Consensus 326 sR 327 (506)
T PRK09862 326 SR 327 (506)
T ss_pred EE
T ss_conf 96
No 279
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.001 Score=49.19 Aligned_cols=150 Identities=22% Similarity=0.301 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH--CCC
Q ss_conf 489999999999874101236566512898726786168899999998723776530022447740345320130--477
Q gi|254780877|r 573 QSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI--GSP 650 (853)
Q Consensus 573 q~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li--Gap 650 (853)
|..+.+.+..++...|. |- .+||.||.|+||+.+|+.+|+.|+.....-. ......+++ |+-
T Consensus 9 q~~~~~~L~~~i~~~rl-------~H-A~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~--------~~~~~~~~i~~g~H 72 (319)
T PRK08769 9 QQRAFDQTVAALDAGRL-------GH-GLLICGPEGLGKRAVALALAEHVLASGPDPA--------LAQRTRQLIAAGTH 72 (319)
T ss_pred CHHHHHHHHHHHHCCCC-------CC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCC--------CCCHHHHHHHCCCC
T ss_conf 68999999999976994-------20-6875899987899999999999837997976--------54338899966899
Q ss_pred CHHCCC----CCCC------CCCHHHH-------CCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEEC
Q ss_conf 112035----6677------4211322-------156----410220214414989999999984045788799977830
Q gi|254780877|r 651 PGYVGY----EEGG------ALTEAVR-------RHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDF 709 (853)
Q Consensus 651 pGYvG~----~~gg------~Lte~vr-------~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f 709 (853)
|-|.-. ++.| .-++.|| ..| |-|+++|+.|+.+++-.|.||-.|+|=-
T Consensus 73 PD~~~i~~~~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp----------- 141 (319)
T PRK08769 73 PDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPS----------- 141 (319)
T ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-----------
T ss_conf 896877534444543112348699999999996137202795699980667528999999999822799-----------
Q ss_pred CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHH
Q ss_conf 3315595485126876403267999999999862885772666815862889989999999
Q gi|254780877|r 710 RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIV 770 (853)
Q Consensus 710 ~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~ 770 (853)
.+++||++|+--.. +.|-...|. ..+.|.+.+.++....+
T Consensus 142 ~~~~~iL~~~~~~~--------------------ll~TI~SRC-q~~~~~~p~~~~~~~~L 181 (319)
T PRK08769 142 PGRYLWLISAQPAR--------------------LPATIRSRC-QRLEFKLPPAHEALAWL 181 (319)
T ss_pred CCEEEEEEECCHHH--------------------CCHHHHHCC-EEECCCCCCHHHHHHHH
T ss_conf 88489998699365--------------------824776485-01118996999999999
No 280
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.99 E-value=1.4e-05 Score=64.33 Aligned_cols=138 Identities=28% Similarity=0.390 Sum_probs=85.5
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC
Q ss_conf 56998729853333357899999996336777866895288740777999999987348998444574378873135421
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA 247 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 247 (853)
|+.+-+..+.|+= --.-|++.+-+|=. .|+|.+||||.|-|||=+++-||+.+ +||-...+.+ + +.
T Consensus 124 l~~~~~n~~~d~~-D~nvelehleeVEL--~KSNILLiGPTGSGKTLLAqTLA~~L---~VPfAiADAT-------t-LT 189 (452)
T TIGR00382 124 LNLKEKNKKSDNG-DSNVELEHLEEVEL--SKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADAT-------T-LT 189 (452)
T ss_pred HHHHHHCCCCCCC-CCHHHHHHHHHHHH--HCCCEEEECCCCCCHHHHHHHHHHHC---CCCEEECCHH-------H-HH
T ss_conf 5324304555884-00023544444333--00662454688852689999999873---8874211111-------0-20
Q ss_pred CCCCCCH-HHHHHHHHHHHHH----HCCCCEEEEECCHHHHCCCCCCCC---CCCHH------HHHHHHHCCCCEEEEEE
Q ss_conf 7454202-4545899999986----079976999636277302666554---33588------88765312466048997
Q gi|254780877|r 248 GAKFRGE-FEERLKSLLCEIR----SEDGEIILFIDELHVLVGAGKTDG---AMDAS------NLLKPSLARGELHCIGA 313 (853)
Q Consensus 248 g~~~rg~-~e~r~~~i~~~~~----~~~~~~ilfide~h~~~gaG~~~g---~~Daa------n~LKP~LarG~l~~Iga 313 (853)
=|.|.|| -|.=|..+|.... .+. +=|.|||||-=|- -.+++ +-|+| -||| |-.|. |++
T Consensus 190 EAGYVGEDVENIL~~Llq~ad~DV~kA~-kGIiYIDEIDKIa--RkSEN~SITRDVSGEGVQQALLK--i~EGT---vA~ 261 (452)
T TIGR00382 190 EAGYVGEDVENILLKLLQAADYDVEKAQ-KGIIYIDEIDKIA--RKSENPSITRDVSGEGVQQALLK--IIEGT---VAN 261 (452)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHC-CCEEEEECCCCHH--HHCCCCEEEEEECCCHHHHHHHH--HHHCC---EEE
T ss_conf 0664242288999999874145524527-8508984223101--21577801122175549999998--76032---343
Q ss_pred ECHHHHHHHHHCCH
Q ss_conf 44899999730011
Q gi|254780877|r 314 TTLDEYRKYIEKDP 327 (853)
Q Consensus 314 TT~~Eyrk~iEkD~ 327 (853)
-=|..=|||=+.|-
T Consensus 262 vPPqGGRKHP~~~~ 275 (452)
T TIGR00382 262 VPPQGGRKHPQQEF 275 (452)
T ss_pred ECCCCCCCCCCCCE
T ss_conf 17544886886576
No 281
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=7e-05 Score=58.62 Aligned_cols=174 Identities=21% Similarity=0.229 Sum_probs=94.2
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCHH------------HCCC--EEEEEEHHHHHCCCCCCCHH-
Q ss_conf 963367778668952887407779999999873489-9844------------4574--37887313542174542024-
Q gi|254780877|r 192 QVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGD-IPES------------LKGK--RLMALDMGALIAGAKFRGEF- 255 (853)
Q Consensus 192 ~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~-vp~~------------l~~~--~i~~ld~~~l~ag~~~rg~~- 255 (853)
+-+..|--+--++.|+.|+||.+++..+|+.+.-.+ .++. -.+. -++.+..-.+-++..-.++.
T Consensus 14 ~~~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~ 93 (342)
T PRK06964 14 QALRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDA 93 (342)
T ss_pred HHCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHH
T ss_conf 98068713057657999867999999999998389999888978677778888627999745534002102233321001
Q ss_pred --------------------HHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC--CEEE
Q ss_conf --------------------54589999998607---9976999636277302666554335888876531246--6048
Q gi|254780877|r 256 --------------------EERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG--ELHC 310 (853)
Q Consensus 256 --------------------e~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG--~l~~ 310 (853)
=+.++.+.+.+.-+ .+.-|..||+.+.+- ..|||-|--.|..- .-.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn--------~~aaNalLK~LEEPp~~~~~ 165 (342)
T PRK06964 94 KAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALN--------VAAANALLKTLEEPPPGVVF 165 (342)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHC--------HHHHHHHHHHHCCCCCCEEE
T ss_conf 0111222101235655645499999999997007545884499982778738--------99999999972379878489
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA 390 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA 390 (853)
|=.|+. ..+.. +-+-.|-|.|.+..|+.++....|+. .+|. + +- +.+.++ .--|.+|
T Consensus 166 iL~~~~--~~~ll---pTI~SRcq~~~~~~~~~~~~~~~L~~--------~~v~--~-a~-~lla~a------~G~p~~A 222 (342)
T PRK06964 166 LLVSAR--IDRLL---PTILSRCRQWPMTVPAPEAAAAWLAA--------QGVA--D-AN-ALLAEA------GGAPLAA 222 (342)
T ss_pred EEEECC--HHHCC---HHHHHCCEEECCCCCCHHHHHHHHHH--------CCCC--C-HH-HHHHHC------CCCHHHH
T ss_conf 998699--25483---68876764302899599999999987--------3986--3-99-999880------9998999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780877|r 391 IDLMDE 396 (853)
Q Consensus 391 IDllDe 396 (853)
+.+.++
T Consensus 223 l~l~~~ 228 (342)
T PRK06964 223 LALASD 228 (342)
T ss_pred HHHHCC
T ss_conf 987167
No 282
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00079 Score=50.07 Aligned_cols=243 Identities=19% Similarity=0.256 Sum_probs=134.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCE-------EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 235547767459489999999999874101236566512-------8987267861688999999987237765300224
Q gi|254780877|r 561 RIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMG-------SFMFLGPTGVGKTELVKSLARLLFDDENSMIRID 633 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~-------~flf~GptGvGKTelak~la~~lf~~~~~lir~d 633 (853)
.+-..+--.|+|.+..-++++-.+ .|=...+-|-| ..|++|-+|+||+.|-|.+++.. .++.-.
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqL----fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a---Pr~vyt-- 349 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQL----FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA---PRGVYT-- 349 (682)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHH----CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC---CCEEEE--
T ss_conf 999974151038199999999996----08976647998620242269981798251999999988648---840797--
Q ss_pred HHHHCCCCCCCHHHCC---CCHHCC--CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEE
Q ss_conf 4774034532013047---711203--56677421132215641022021441498999999998404578879997783
Q gi|254780877|r 634 MSEYMEKHSVSRLIGS---PPGYVG--YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVD 708 (853)
Q Consensus 634 Msey~e~~~vs~LiGa---ppGYvG--~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~ 708 (853)
.....|...|..| -|. .| +=|+|.|.-| -.+|.+.||++|+.-...+.+...|+..+++=+++=
T Consensus 350 ---sgkgss~~GLTAav~rd~~-tge~~LeaGALVlA----D~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAG--- 418 (682)
T COG1241 350 ---SGKGSSAAGLTAAVVRDKV-TGEWVLEAGALVLA----DGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAG--- 418 (682)
T ss_pred ---CCCCCCCCCCEEEEEECCC-CCEEEEECCEEEEE----CCCEEEEEECCCCCHHHHHHHHHHHHHCEEEECCCC---
T ss_conf ---2641254573069997067-76078867779992----497799970567776789999999875275120554---
Q ss_pred CCCCEEEECCCHHHHHHHCC---------HHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCC-CH----HHHHHHHHHHH
Q ss_conf 03315595485126876403---------267999999999862885772666815862889-98----99999999999
Q gi|254780877|r 709 FRNTLIIMTSNLGAEYLIED---------GDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKL-RK----EDMAKIVRIQL 774 (853)
Q Consensus 709 f~n~iii~TsN~G~~~~~~~---------~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l-~~----~~~~~i~~~~l 774 (853)
|..|-|.=+..+... .....+.+ -|+|.||.|+|-|++...- ++ .-...|+..+.
T Consensus 419 -----I~atLnARcsvLAAaNP~~Gryd~~~~~~enI------~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~ 487 (682)
T COG1241 419 -----ITATLNARCSVLAAANPKFGRYDPKKTVAENI------NLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHR 487 (682)
T ss_pred -----EEEECCHHHHHHHHHCCCCCCCCCCCCHHHHC------CCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf -----25411144445665188777679999978855------8983577517754770578885335999999999863
Q ss_pred --------------------HH-HHHHH--HHCCCEEEECHHHHHHHHHCCCCC-C------------CCCHHHHHHHHH
Q ss_conf --------------------99-99999--857989999889999999708982-2------------062157999998
Q gi|254780877|r 775 --------------------GR-VLSLI--KERNISMDFDDQVIDWLSCRGYDP-S------------YGARPLKRVIQR 818 (853)
Q Consensus 775 --------------------~~-l~~~l--~~~~i~l~~~~~~~~~l~~~~~~~-~------------~GaR~l~r~i~~ 818 (853)
-+ +.+-+ +.+.+.-.+++++.+.|.+.--+. + .-+|.|..+|+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiR- 566 (682)
T COG1241 488 GEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIR- 566 (682)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-
T ss_conf 4565322333322222346589999999987505896128999999999998765201223456754561999999999-
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 733499999970868897
Q gi|254780877|r 819 YIQNPLAERVLSQTISDG 836 (853)
Q Consensus 819 ~i~~~la~~il~~~~~~g 836 (853)
+.-..|++-|+..+.+.
T Consensus 567 -LaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 567 -LAEAHAKMRLSDVVEEE 583 (682)
T ss_pred -HHHHHHHHHCCCCCCHH
T ss_conf -99998865444777889
No 283
>KOG0726 consensus
Probab=97.97 E-value=7e-06 Score=66.75 Aligned_cols=161 Identities=24% Similarity=0.463 Sum_probs=102.1
Q ss_pred HHCCHHHHHHHHHHHHHHH--------HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 7459489999999999874--------10123656651289872678616889999999872377653002244774034
Q gi|254780877|r 569 SVIGQSAAVESVSNALRRF--------RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK 640 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~~--------~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~ 640 (853)
-|=|-++-|..+-.++-.. --|++. |-|+. +.|++|+|||-|||++|..- .--|+|+--||.
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikp---PKGVI-lyG~PGTGKTLLAKAVANqT---SATFlRvvGseL--- 255 (440)
T KOG0726 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKP---PKGVI-LYGEPGTGKTLLAKAVANQT---SATFLRVVGSEL--- 255 (440)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCC---CCEEE-EECCCCCCHHHHHHHHHCCC---CHHHHHHHHHHH---
T ss_conf 442578999999986338889878999728899---97058-86799975368888772455---212455650899---
Q ss_pred CCCCHHHCCCCHHCCCCCCCCCCHHHH----CCCCCEEEEHHHHHC-----------CHHHHHHHHHHHHCCEEECCCCC
Q ss_conf 532013047711203566774211322----156410220214414-----------98999999998404578879997
Q gi|254780877|r 641 HSVSRLIGSPPGYVGYEEGGALTEAVR----RHPYQVVLFDEIEKA-----------HSDVHNILLQVLDDGRLTDSQGR 705 (853)
Q Consensus 641 ~~vs~LiGappGYvG~~~gg~Lte~vr----~~P~sVil~DEiEKa-----------h~~v~~~llqild~G~ltd~~G~ 705 (853)
+.+-.| +|..|...+- .+--|+|+.|||+-- ..+|+..+|.+|..=-=.|++|
T Consensus 256 --iQkylG---------dGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg- 323 (440)
T KOG0726 256 --IQKYLG---------DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG- 323 (440)
T ss_pred --HHHHHC---------CCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf --998736---------55199999998887529826986400110452134788507899999999987426866567-
Q ss_pred EEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 783033155954851268764032679999999998628857726668158628899899999999999
Q gi|254780877|r 706 TVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 706 ~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
+.-+||.+|- | +....+ ..+| +|||.-|-|.--+....++|+.+.-
T Consensus 324 -----DvKvimATnr----i----e~LDPa-------LiRP---GrIDrKIef~~pDe~TkkkIf~IHT 369 (440)
T KOG0726 324 -----DVKVIMATNR----I----ETLDPA-------LIRP---GRIDRKIEFPLPDEKTKKKIFQIHT 369 (440)
T ss_pred -----CEEEEEECCC----C----CCCCHH-------HCCC---CCCCCCCCCCCCCHHHHCEEEEEEE
T ss_conf -----7589974165----3----446775-------5278---7543111257975563231568750
No 284
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.97 E-value=0.00023 Score=54.40 Aligned_cols=203 Identities=19% Similarity=0.311 Sum_probs=121.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHC----------CCCCHHHCCCEEEEEEHH
Q ss_conf 853333357899999996336--77786689528874077799999998734----------899844457437887313
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIIN----------GDIPESLKGKRLMALDMG 243 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~----------~~vp~~l~~~~i~~ld~~ 243 (853)
.-.++||+..-++++.+.+.+ .+..++++.||.|+||--++..+-+.=.. +.+|+.|-...+|.-.-|
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekG 218 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKG 218 (464)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 56775206999999999999984779978997789875899999998607445899256334648988877776145656
Q ss_pred HHHCC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCH-HHHHHHHHCCC-------------CE
Q ss_conf 54217-45420245458999999860799769996362773026665543358-88876531246-------------60
Q gi|254780877|r 244 ALIAG-AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDA-SNLLKPSLARG-------------EL 308 (853)
Q Consensus 244 ~l~ag-~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Da-an~LKP~LarG-------------~l 308 (853)
++-.. ++-.|-||+ ++|. .||+|||..+ ++++ +.+|+ .|..| ++
T Consensus 219 AFTGA~~~r~G~fE~-----------A~GG-TLfLDEI~~m--------pl~~Q~kLLR-vLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 219 AFTGAITRRIGRFEQ-----------ANGG-TLFLDEIGEM--------PLELQVKLLR-VLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred CCCCCCCCCCCCEEE-----------CCCC-EEEEECCCCC--------CHHHHHHHHH-HHHCCEEEECCCCCEECEEE
T ss_conf 767764345761577-----------3796-5873231109--------9999999999-98707067358886000016
Q ss_pred EEEEEECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCC
Q ss_conf 489974489999973001---113202311111577767899999997898654149610158999998633320-2457
Q gi|254780877|r 309 HCIGATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY-ITDR 384 (853)
Q Consensus 309 ~~IgaTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY-i~~r 384 (853)
|+|+||.-+= .+.++.- .-|--|+.++.+.=|.--+-.+=+--+...| ..+.|.+| .+-+
T Consensus 278 RiIaaT~~dL-~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hf---------------l~~~~~~~~~~~~ 341 (464)
T COG2204 278 RIIAATNRDL-EEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHF---------------LKRFAAELGRPPK 341 (464)
T ss_pred EEEEECCCCH-HHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHH---------------HHHHHHHHCCCCC
T ss_conf 9996057789-99988197378888652331104876223620079999999---------------9999998099988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 6747789999999998754102221457887999997445
Q gi|254780877|r 385 FLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKI 424 (853)
Q Consensus 385 ~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~ 424 (853)
.+-.. |...+..+.+|-.+.++++-+++.-.
T Consensus 342 ~~s~~---------a~~~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 342 GFSPE---------ALAALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred CCCHH---------HHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 87999---------99999738998189999999999985
No 285
>PRK08181 transposase; Validated
Probab=97.96 E-value=1.2e-05 Score=64.93 Aligned_cols=102 Identities=18% Similarity=0.369 Sum_probs=67.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC-CCCCEEEEHH
Q ss_conf 898726786168899999998723776530022447740345320130477112035667742113221-5641022021
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR-HPYQVVLFDE 678 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~-~P~sVil~DE 678 (853)
..+|+||||||||.||.+|+.......-...-+.|++..+.-..++.-| .+...+++ ..+.++.+||
T Consensus 108 Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~~~------------~~~~~~~~l~~~dLLIiDe 175 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARREL------------QLESAIAKLDKFDLLILDD 175 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCC------------CHHHHHHHHHCCCEEEEHH
T ss_conf 0899899998788999999999998799399978999999999977558------------3999999974446012201
Q ss_pred HHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHH
Q ss_conf 4414--989999999984045788799977830331559548512687
Q gi|254780877|r 679 IEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEY 724 (853)
Q Consensus 679 iEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~ 724 (853)
+=-. .+.--++|+|++++=+ ++ .=+|.|||+....
T Consensus 176 ~G~~~~~~~~~~~lf~lI~~Ry-----e~------~S~IITSn~~~~~ 212 (269)
T PRK08181 176 LAYVTKDQAETSVLFELISARY-----ER------RSILITANQPFGE 212 (269)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----CC------CCEEEECCCCHHH
T ss_conf 0566799899999999999985-----78------8889988999778
No 286
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.96 E-value=0.00036 Score=52.81 Aligned_cols=221 Identities=15% Similarity=0.214 Sum_probs=122.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCCCCCC--EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 235547767459489999999999874-10123656651--289872678616889999999872377653002244774
Q gi|254780877|r 561 RIETEISKSVIGQSAAVESVSNALRRF-RAGLQDPQRPM--GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY 637 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~v~~~~~~~-~~gl~~~~~p~--~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey 637 (853)
.|-+.+--.|+|.+..-.++.-.+.-. .-.+.+..+-. -..|++|-+|+||+.|-|..++.. .++...=-+
T Consensus 196 ~L~~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~ihiLLvGDPGtgKSqlLk~~~~ia---prsvytsG~--- 269 (509)
T smart00350 196 RLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTA---PRAVYTTGK--- 269 (509)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHC---CCEEEEECC---
T ss_conf 99985497323878899999999708876648988504154149984699823629999999858---860687344---
Q ss_pred CCCCCCCHHHCCCC-HHCC---CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCC-EEEC-CC
Q ss_conf 03453201304771-1203---56677421132215641022021441498999999998404578879997-7830-33
Q gi|254780877|r 638 MEKHSVSRLIGSPP-GYVG---YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGR-TVDF-RN 711 (853)
Q Consensus 638 ~e~~~vs~LiGapp-GYvG---~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~-~v~f-~n 711 (853)
..|.+.|..|-- ...+ .=|+|.|.- .--+|...||++|..++-...++..|+.++++=+++- ...+ ..
T Consensus 270 --gsS~aGLTaav~rd~~~ge~~leaGALVl----AD~GiccIDEfdKm~~~dr~alhEaMEQQtisiaKaGi~~tL~aR 343 (509)
T smart00350 270 --GSSAVGLTAAVTRDPETREFTLEGGALVL----ADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNAR 343 (509)
T ss_pred --CCCCCCCEEEEEECCCCCCEEECCCCEEC----CCCCEEEEEEHHHCCHHHHHHHHHHHHHCEEEEECCCEEEEEECC
T ss_conf --45557706899981788837872564120----567547852132078778999999997487787437517998557
Q ss_pred CEEEECCCH-HHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCC-CCHHHHHHHHHHHHH--------------
Q ss_conf 155954851-2687640326799999999986288577266681586288-998999999999999--------------
Q gi|254780877|r 712 TLIIMTSNL-GAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEK-LRKEDMAKIVRIQLG-------------- 775 (853)
Q Consensus 712 ~iii~TsN~-G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~-l~~~~~~~i~~~~l~-------------- 775 (853)
|-|+...|- +...- ......+ .-.|+|.+|.|+|-|++... .+++.=..|++..+.
T Consensus 344 ~sVlAAaNP~~g~yd--~~~s~~e------ni~l~~~LLSRFDLIf~l~D~~~~~~D~~ia~hil~~h~~~~~~~~~~~~ 415 (509)
T smart00350 344 CSVLAAANPIGGRYD--PKLTPEE------NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADE 415 (509)
T ss_pred CEEEEEECCCCCCCC--CCCCHHH------HCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 359986556556378--8899999------46898035410238999615898788999999999987415887545568
Q ss_pred ------HHHHHHH--HCCCEEEECHHHHHHHHHC
Q ss_conf ------9999998--5798999988999999970
Q gi|254780877|r 776 ------RVLSLIK--ERNISMDFDDQVIDWLSCR 801 (853)
Q Consensus 776 ------~l~~~l~--~~~i~l~~~~~~~~~l~~~ 801 (853)
-+.+-+. ...+.=.++++|.+.|.+.
T Consensus 416 ~~~~~~~lrkYI~yar~~~~P~ls~eA~~~i~~~ 449 (509)
T smart00350 416 VPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKA 449 (509)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 8689999999999998628997899999999999
No 287
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.0035 Score=44.79 Aligned_cols=195 Identities=16% Similarity=0.214 Sum_probs=117.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEE--------EEEEHHHHH
Q ss_conf 85333335789999999633677786-689528874077799999998734899844457437--------887313542
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRL--------MALDMGALI 246 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i--------~~ld~~~l~ 246 (853)
.++.|||-+.-++.+...+...+=.+ -+++|+.|+||++.+..+|+.+....-+..-..+++ +.+......
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCCCC
T ss_conf 83312594999999999998599674487789998329999999999985789999766558751899977886056200
Q ss_pred CCCCCCC-HHH--------------HHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-CC
Q ss_conf 1745420-245--------------4589999998607---997699963627730266655433588887653124-66
Q gi|254780877|r 247 AGAKFRG-EFE--------------ERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-GE 307 (853)
Q Consensus 247 ag~~~rg-~~e--------------~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-G~ 307 (853)
.|..+.. +.+ +.++.+...+..+ .+.-|..||++|++ +..|||-|-=.|.. +.
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m--------~~~AaNaLLKtLEEP~~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM--------NEAAANALLKTLEEPGN 153 (314)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHC--------CHHHHHHHHHHHCCCCC
T ss_conf 3454557789876530268777879999999999731885688479998897871--------99999999986147878
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
-.+|=.|+..+ +-. +-+-.|-|.|.....+.++...+|...... -.-.+..+++.+.+.=| |
T Consensus 154 ~~fILit~~~~--~lL---pTI~SRCQ~i~F~~l~~~~i~~~L~~~~~~----~~~~~~~~~l~~~A~Gs---------p 215 (314)
T PRK07399 154 GTLILIAPSPE--SLL---PTIVSRCQIIPFYRLSDEQLEQVLKRLGDN----INEILDHPELLALAQGS---------P 215 (314)
T ss_pred CEEEEEECCHH--HCC---HHHHCCCEEEECCCCCHHHHHHHHHHCCCC----CCCCCCHHHHHHHHCCC---------H
T ss_conf 56999979936--491---466418756338998999999999971664----33102789999881799---------7
Q ss_pred HHHHHHHHH
Q ss_conf 778999999
Q gi|254780877|r 388 DKAIDLMDE 396 (853)
Q Consensus 388 DKAIDllDe 396 (853)
.+||+.++.
T Consensus 216 G~a~~~~~~ 224 (314)
T PRK07399 216 GAAIANIEQ 224 (314)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 288
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.96 E-value=0.00044 Score=52.15 Aligned_cols=202 Identities=16% Similarity=0.229 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-----CHHHHCCCCCCCHHH
Q ss_conf 489999999999874101236566512898726786168899999998723776530022-----447740345320130
Q gi|254780877|r 573 QSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-----DMSEYMEKHSVSRLI 647 (853)
Q Consensus 573 q~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~-----dMsey~e~~~vs~Li 647 (853)
+.+|...+..++.. . + |.-+++|+.|+|||.+.+.+.+.|-.+.-..+.+ ...|+-. .+..-+
T Consensus 28 h~~al~~L~~~l~~-------~-~--g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~--~i~~~l 95 (269)
T TIGR03015 28 HKRAMAYLEYGLSQ-------R-E--GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLR--MVAADF 95 (269)
T ss_pred HHHHHHHHHHHHHC-------C-C--CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH--HHHHHC
T ss_conf 99999999999964-------8-9--6599972998988999999998459345489997699999999999--999985
Q ss_pred CCCCHHCCCCCCC---CCCH----HHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCH
Q ss_conf 4771120356677---4211----32215641022021441498999999998404578879997783033155954851
Q gi|254780877|r 648 GSPPGYVGYEEGG---ALTE----AVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNL 720 (853)
Q Consensus 648 GappGYvG~~~gg---~Lte----~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~ 720 (853)
|.||... +... .|++ .....-..|+++||-..-++++++-|-.+++- -+|+.. . .-+|+.
T Consensus 96 g~~~~~~--~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n~--e~~~~~-l-----l~iiL~--- 162 (269)
T TIGR03015 96 GLETEGR--DKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNF--QTDNAK-L-----LQIFLV--- 162 (269)
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCC--CCCCCC-C-----EEEEEE---
T ss_conf 9898898--99999999999999999669946999724221999999999999701--358887-0-----489995---
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC--EEEECHHHHHHH
Q ss_conf 268764032679999999998628857726668158628899899999999999999999985798--999988999999
Q gi|254780877|r 721 GAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNI--SMDFDDQVIDWL 798 (853)
Q Consensus 721 G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i--~l~~~~~~~~~l 798 (853)
|...+ .+.+...--+.|-.||.--+...||+.++...-++-.| +.-|. ..-+++++++.|
T Consensus 163 GqpeL-----------~~~L~~~~~~~l~qRI~~~~~L~pl~~eet~~YI~~RL-------~~AG~~~~~~Ft~~A~~~I 224 (269)
T TIGR03015 163 GQPEF-----------RETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRL-------ERAGNRDAPVFSEGAFDAI 224 (269)
T ss_pred CCHHH-----------HHHHCCCCHHHHHHCEEEEEEECCCCHHHHHHHHHHHH-------HHCCCCCCCCCCHHHHHHH
T ss_conf 78679-----------99872740254555076799847999899999999999-------8669999998599999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 97089822062157999998733499
Q gi|254780877|r 799 SCRGYDPSYGARPLKRVIQRYIQNPL 824 (853)
Q Consensus 799 ~~~~~~~~~GaR~l~r~i~~~i~~~l 824 (853)
.+.+ +++.|.|...-...|
T Consensus 225 ~~~S-------~G~PR~IN~Lc~~aL 243 (269)
T TIGR03015 225 HRFS-------RGIPRLINILCDRLL 243 (269)
T ss_pred HHHC-------CCCHHHHHHHHHHHH
T ss_conf 9986-------990089999999999
No 289
>KOG0729 consensus
Probab=97.95 E-value=5.5e-05 Score=59.46 Aligned_cols=77 Identities=30% Similarity=0.526 Sum_probs=36.3
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCEEEEHHHHH
Q ss_conf 26786168899999998723776530022447740345320130477112035667--7421132215641022021441
Q gi|254780877|r 604 LGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQVVLFDEIEK 681 (853)
Q Consensus 604 ~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sVil~DEiEK 681 (853)
.||+|+|||-+|+++|.-- .-.+||.=-||.-+ -|||-+.- -.|-+.-|.+..|+|+||||+-
T Consensus 217 yGPPGtGKTL~ARAVANRT---dAcFIRViGSELVQ------------KYvGEGARMVRElFeMAr~KKACiiFFDEiDA 281 (435)
T KOG0729 217 YGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ------------KYVGEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred ECCCCCCHHHHHHHHHCCC---CCEEEEEHHHHHHH------------HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 6899986108999874566---74587631189999------------98624689999999985236527998410102
Q ss_pred -----------CCHHHHHHHHHHHH
Q ss_conf -----------49899999999840
Q gi|254780877|r 682 -----------AHSDVHNILLQVLD 695 (853)
Q Consensus 682 -----------ah~~v~~~llqild 695 (853)
...+|+..+|.++.
T Consensus 282 iGGaRFDDg~ggDNEVQRTMLEli~ 306 (435)
T KOG0729 282 IGGARFDDGAGGDNEVQRTMLELIN 306 (435)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 2672035788872799999999998
No 290
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=97.94 E-value=0.00047 Score=51.88 Aligned_cols=114 Identities=29% Similarity=0.418 Sum_probs=80.9
Q ss_pred CCCCCCHHHHHHHHH----HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCC
Q ss_conf 533333578999999----9633677786689528874077799999998734899844457437887313542174542
Q gi|254780877|r 177 LDPVIGRDDEMRRAI----QVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFR 252 (853)
Q Consensus 177 LDPVIGRe~EI~~~~----~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~r 252 (853)
++-++|-|.+.+.++ +-+....-||++|-|+.|.||+++|.++...... ++-|+++++-..|
T Consensus 27 l~~L~Gie~Qk~~l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~-------~gLrlIEv~k~~L------- 92 (248)
T pfam05673 27 LDDLVGIDRQKEALLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYAD-------QGLRLIEVDKDDL------- 92 (248)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEECHHHH-------
T ss_conf 88934939999999999999980898613676768989888999999998631-------4956999878887-------
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCC-----EEEEEEEC
Q ss_conf 0245458999999860799769996362773026665543358888765312466-----04899744
Q gi|254780877|r 253 GEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGE-----LHCIGATT 315 (853)
Q Consensus 253 g~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~-----l~~IgaTT 315 (853)
.-+-.|++.+...+.+-|||+|++- -+..-+--..||..|..|- =-+|-||+
T Consensus 93 ----~~Lp~i~~~l~~~~~kFIiF~DDLS-------Fe~~d~~yk~LKs~LeG~l~~~p~NvliYaTS 149 (248)
T pfam05673 93 ----GDLPDIVDLLRGRPYRFILFCDDLS-------FEEGESSYKALKSVLEGGLEARPDNVLIYATS 149 (248)
T ss_pred ----CCHHHHHHHHHCCCCCEEEEECCCC-------CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEC
T ss_conf ----2199999999649975799963557-------67897369999999657644688738999842
No 291
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.93 E-value=9.7e-05 Score=57.48 Aligned_cols=200 Identities=19% Similarity=0.270 Sum_probs=106.7
Q ss_pred CCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC--------
Q ss_conf 3333357899999996336--777866895288740777999999987348998444574378873135421--------
Q gi|254780877|r 178 DPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA-------- 247 (853)
Q Consensus 178 DPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-------- 247 (853)
..+||...-++++.+.+.| ++..++++.||+|+||..++..+-+.=.. ++.-++.+|.+++-.
T Consensus 139 ~~liG~S~am~~v~~~i~~~A~s~~pVLI~GE~GTGK~~~Ar~IH~~S~r-------~~~pfv~vnC~~l~~~l~eseLF 211 (441)
T PRK10365 139 FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNESLLESELF 211 (441)
T ss_pred CCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCC-------CCCCCEEEECCCCCHHHHHHHHC
T ss_conf 78666899999999999998488994899899981099999999965787-------78980798789898455589861
Q ss_pred CCCCCCHHHH---HHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-------------CCEEEE
Q ss_conf 7454202454---589999998607997699963627730266655433588887653124-------------660489
Q gi|254780877|r 248 GAKFRGEFEE---RLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-------------GELHCI 311 (853)
Q Consensus 248 g~~~rg~~e~---r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-------------G~l~~I 311 (853)
|. -+|.|-. +-.+.+. .++|. -||+|||+.+ +.+.-.-|--.|.. -++|+|
T Consensus 212 G~-~~gaftga~~~~~g~~~---~A~gG-TLfLdeI~~l--------~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiI 278 (441)
T PRK10365 212 GH-EKGAFTGADKRREGRFV---EADGG-TLFLDEIGDI--------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLI 278 (441)
T ss_pred CC-CCCCCCCCCCCCCCCEE---ECCCC-EECCCCCCCC--------CHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEE
T ss_conf 77-55687896534689877---88998-2550231529--------999999999877752100058873441363799
Q ss_pred EEECHHHHHHHHHC---CHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCCCH
Q ss_conf 97448999997300---111320231111157776789999999789865414961015899999863332024-57674
Q gi|254780877|r 312 GATTLDEYRKYIEK---DPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYIT-DRFLP 387 (853)
Q Consensus 312 gaTT~~Eyrk~iEk---D~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~-~r~lP 387 (853)
++|+.+=- +.++. ...|--|+..+.|.=|.--+-.+=+.-+...| .-.++.+|-. -+.+.
T Consensus 279 aat~~~l~-~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~f---------------l~~~~~~~~~~~~~~s 342 (441)
T PRK10365 279 AATHRDLA-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHF---------------LQRFAERNRKAVKGFT 342 (441)
T ss_pred ECCCCCHH-HHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHH---------------HHHHHHHCCCCCCCCC
T ss_conf 83788999-9988198258999886011137826000620099999999---------------9999998499988889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 77899999999987541022214578879999974
Q gi|254780877|r 388 DKAIDLMDEASARVRMQIDTKPEVLDELDRRIICL 422 (853)
Q Consensus 388 DKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l 422 (853)
..|+.. +..+.+|-.+.++++.+++.
T Consensus 343 ~~a~~~---------L~~y~WPGNvREL~n~iera 368 (441)
T PRK10365 343 PQAMDL---------LIHYDWPGNIRELENAVERA 368 (441)
T ss_pred HHHHHH---------HHCCCCCCHHHHHHHHHHHH
T ss_conf 999999---------97099998999999999999
No 292
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.92 E-value=0.00048 Score=51.81 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=66.8
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCEEE-CCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHH-HHCCHHHH
Q ss_conf 10220214414989999999984045788-79997783033155954851268764032679999999998-62885772
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGRLT-DSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVR-SAFKPEFL 749 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~lt-d~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~-~~f~pefl 749 (853)
.++=|-|+=|++.+.+..||.+-++|... |...-.++|. .+||.+||- +++ +..+ ...-+.|+
T Consensus 238 Gi~ef~E~~K~~~~~L~~LL~~tqE~~vk~~~~~~~~~~d-~viia~sNe-~E~-------------~~f~~~~~~ea~~ 302 (361)
T smart00763 238 GILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPID-GLIIAHSNE-SEW-------------QRFKSNKKNEALL 302 (361)
T ss_pred CCEEHHHHHHCCHHHHHHHHCCCCCCEECCCCCCCCCCCC-EEEEECCCH-HHH-------------HHHHCCCCCHHHH
T ss_conf 6000487751759999998420103604178865653245-158824985-999-------------8764484105555
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf 66681586288998999999999999999999857989999889999999
Q gi|254780877|r 750 NRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLS 799 (853)
Q Consensus 750 nRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~ 799 (853)
.|+.-|=+=.-|.-.+=.+|.++.+..- .-....+.|.+++..+
T Consensus 303 dR~~~i~vPY~l~~~~E~kIY~k~l~~~------~~~~~h~aPhtl~~aa 346 (361)
T smart00763 303 DRIIKVKVPYCLRVSEEAQIYEKLLRNS------DLTEAHIAPHTLEMAA 346 (361)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC------CCCCCCCCCCHHHHHH
T ss_conf 0279986874167388999999995656------5668772986899999
No 293
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=97.90 E-value=0.00083 Score=49.88 Aligned_cols=218 Identities=24% Similarity=0.403 Sum_probs=155.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
.=+||++.-+.+|+..|.+. .+.+ + +-|++|=||+||==+||+|-+.=.=.++.||-|||.-==|.===|=|+
T Consensus 142 ~Gli~~~~~m~kic~tIekv----A~sd--~-TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELF 214 (451)
T TIGR02915 142 EGLITSSPGMQKICRTIEKV----APSD--I-TVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELF 214 (451)
T ss_pred CCEEECCCCHHHHHHHHHHH----CCCC--C-EEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 65220685067898886521----2000--0-130104667117899989842057897773444167457524667760
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCC-------CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCE---EECCCCEEEEC
Q ss_conf 477112035667742113221564-------10220214414989999999984045788799977---83033155954
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPY-------QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRT---VDFRNTLIIMT 717 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~-------sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~---v~f~n~iii~T 717 (853)
||+. |--|.|+|+.+- .=++||||=--.-..+--||.-|.|=.+.==-||. ||-| |||-
T Consensus 215 -------GyEK-GAFTGA~k~T~GKIE~A~~GTLFLDEIGDLP~~LQAKLLRFLQErVIER~GGR~eIPVDVR---vvCA 283 (451)
T TIGR02915 215 -------GYEK-GAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVR---VVCA 283 (451)
T ss_pred -------CCCC-HHHHHHHCCCCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE---EEEC
T ss_conf -------3410-1242200347761675068830111122067668999998754666310588724561426---7503
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCE-EECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 85126876403267999999999-862885772666815-86288998--999999999999999999857989999889
Q gi|254780877|r 718 SNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEI-ILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQ 793 (853)
Q Consensus 718 sN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~i-v~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~ 793 (853)
||- .+...+ .+.||=.|+=||-+| |-.-||-. .|..=++...++++....+ .-.-.||+.
T Consensus 284 Tnq--------------dL~~~i~eg~FREDLfYRl~Eisi~iPPLR~R~gDa~lLA~~Fl~rf~~~~k--~~~~~F~~D 347 (451)
T TIGR02915 284 TNQ--------------DLKKMIAEGTFREDLFYRLAEISITIPPLRDRDGDAVLLANAFLERFARELK--RKAKGFTDD 347 (451)
T ss_pred CCH--------------HHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCHHHH
T ss_conf 224--------------6899985489720001346667862588998601899999999998878733--021660699
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999997089822062157999998733
Q gi|254780877|r 794 VIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 794 ~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
++.+|-. |.=--..|.|...|++-|.
T Consensus 348 A~~ale~--h~WPGNvRELEN~vKRAVI 373 (451)
T TIGR02915 348 ALRALEA--HKWPGNVRELENKVKRAVI 373 (451)
T ss_pred HHHHHHC--CCCCCCHHHHHCHHHEEEE
T ss_conf 9999760--6998841544030021345
No 294
>KOG0652 consensus
Probab=97.90 E-value=0.00016 Score=55.67 Aligned_cols=155 Identities=26% Similarity=0.510 Sum_probs=70.5
Q ss_pred HCCHHHHHHHHHHHHHHH--------HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 459489999999999874--------101236566512898726786168899999998723776530022447740345
Q gi|254780877|r 570 VIGQSAAVESVSNALRRF--------RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~--------~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~ 641 (853)
|=|-+.-|+.+..+|... ..|+.. |-|+ |+.||+|+|||-+|++-|..- ..-++.+- .+.
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~p---PKGv-LmYGPPGTGKTlmARAcAaqT---~aTFLKLA-----gPQ 240 (424)
T KOG0652 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRP---PKGV-LMYGPPGTGKTLMARACAAQT---NATFLKLA-----GPQ 240 (424)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCC---CCCE-EEECCCCCCHHHHHHHHHHHC---CCHHHHHC-----CHH
T ss_conf 32578999999988614565687887468889---9722-765799975779999998740---10688732-----647
Q ss_pred CCCHHHCCCCHHCCCCCCCCCCH-----HHHCCCCCEEEEHHHHH----------C-CHHHHHHHHHHHH--CCEEECCC
Q ss_conf 32013047711203566774211-----32215641022021441----------4-9899999999840--45788799
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEGGALTE-----AVRRHPYQVVLFDEIEK----------A-HSDVHNILLQVLD--DGRLTDSQ 703 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~gg~Lte-----~vr~~P~sVil~DEiEK----------a-h~~v~~~llqild--~G~ltd~~ 703 (853)
-|...|| +|..|.. +-.+.| ++|+.||++- + ..+|+..+|.+|. +|+-.|..
T Consensus 241 LVQMfIG---------dGAkLVRDAFaLAKEkaP-~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~ 310 (424)
T KOG0652 241 LVQMFIG---------DGAKLVRDAFALAKEKAP-TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDR 310 (424)
T ss_pred HHHHHHC---------CHHHHHHHHHHHHHCCCC-EEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 7766533---------418899999987533498-389973002323343653123438999999999986048997562
Q ss_pred CCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH--CCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 9778303315595485126876403267999999999862885772--6668158628899899999999999
Q gi|254780877|r 704 GRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFL--NRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 704 G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefl--nRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
=+.+--+|-+=| +-|.++ +|+|.-|-|.--+.+...+|..+.-
T Consensus 311 vKviAATNRvDi----------------------------LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHs 355 (424)
T KOG0652 311 VKVIAATNRVDI----------------------------LDPALLRSGRLDRKIEFPHPNEEARARILQIHS 355 (424)
T ss_pred EEEEEECCCCCC----------------------------CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 678852164343----------------------------488886446644443488997789889998864
No 295
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=6.7e-05 Score=58.78 Aligned_cols=141 Identities=17% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCH-----HHCCCE---------EEEEEH--HHHHCCCCCCCH-HHHH
Q ss_conf 7778668952887407779999999873489-984-----445743---------788731--354217454202-4545
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGD-IPE-----SLKGKR---------LMALDM--GALIAGAKFRGE-FEER 258 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~-vp~-----~l~~~~---------i~~ld~--~~l~ag~~~rg~-~e~r 258 (853)
|--.--++.|+.|+||++++..+|+.+.-.+ .+. .-..|+ ++.+.. ..--.|.+-. + ==+.
T Consensus 19 rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~-~I~idq 97 (325)
T PRK08699 19 RRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLL-QIKIDA 97 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC-CCCHHH
T ss_conf 5011797579999789999999999982899988899898888899986599999688513445300166556-676999
Q ss_pred HHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCC--EEEEEEECHHHHHHHHHCCHHHHHCC
Q ss_conf 89999998607---99769996362773026665543358888765312466--04899744899999730011132023
Q gi|254780877|r 259 LKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGE--LHCIGATTLDEYRKYIEKDPALARRF 333 (853)
Q Consensus 259 ~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~--l~~IgaTT~~Eyrk~iEkD~Al~RRF 333 (853)
++.+.+.+..+ .+.-|..||+.|.+- ..|+|-|--.|..-- .-+|=.|+.- .+. =+.+-.|-
T Consensus 98 iR~l~~~~~~~~~~~~~kV~ii~~ae~mn--------~~aaNaLLK~LEEPp~~~~fiL~t~~~--~~l---lpTI~SRc 164 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN--------VQAANSLLKVLEEPPPQVVFLLVSHAA--DKV---LPTIKSRC 164 (325)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCHHHHC--------HHHHHHHHHHHCCCCCCEEEEEEECCH--HHC---CCHHHHCC
T ss_conf 99999997108656894699985777758--------999999999841788884899987984--646---23398645
Q ss_pred CEEECCCCCHHHHHHHHH
Q ss_conf 111115777678999999
Q gi|254780877|r 334 QSLLVGEPTVTDTISILR 351 (853)
Q Consensus 334 q~i~V~Eps~~~t~~iL~ 351 (853)
|.+.+..|+.++....|+
T Consensus 165 ~~~~~~~p~~~~~~~~L~ 182 (325)
T PRK08699 165 RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 421089959999999999
No 296
>KOG0744 consensus
Probab=97.86 E-value=0.00064 Score=50.84 Aligned_cols=150 Identities=25% Similarity=0.328 Sum_probs=94.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCC-CCCCHHHHHHHHHHHHHHHCCCC-EEEEECC
Q ss_conf 689528874077799999998734899844457437887313542174-54202454589999998607997-6999636
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGA-KFRGEFEERLKSLLCEIRSEDGE-IILFIDE 279 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~-~~rg~~e~r~~~i~~~~~~~~~~-~ilfide 279 (853)
.+|-|+||.|||++..+|||+..=.-- ..-....+++++-.+|-+-- +--|-.=.+|-.-|+|+.+.+|+ |-+.|||
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~-~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDE 258 (423)
T KOG0744 180 ILLHGPPGTGKTSLCKALAQKLSIRTN-DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDE 258 (423)
T ss_pred EEEECCCCCCHHHHHHHHHHHHEEEEC-CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 998579998822799999875146523-7644406999704678898871211389999999999971789689998078
Q ss_pred HHHHCCCCC----CCCCCC---HHHHHHHHHCC---CCEEEEEEECHHHHHHHHHCCHHHHHCCCEE-ECCCCCHHHHHH
Q ss_conf 277302666----554335---88887653124---6604899744899999730011132023111-115777678999
Q gi|254780877|r 280 LHVLVGAGK----TDGAMD---ASNLLKPSLAR---GELHCIGATTLDEYRKYIEKDPALARRFQSL-LVGEPTVTDTIS 348 (853)
Q Consensus 280 ~h~~~gaG~----~~g~~D---aan~LKP~Lar---G~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i-~V~Eps~~~t~~ 348 (853)
+-.|--|-. ..-+-| +-|-|--.|-| -.=-+|-||..=+ ..| |-||..|=..+ .|..|+.+.-++
T Consensus 259 VESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~--~si--D~AfVDRADi~~yVG~Pt~~ai~~ 334 (423)
T KOG0744 259 VESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT--DSI--DVAFVDRADIVFYVGPPTAEAIYE 334 (423)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHH--HHH--HHHHHHHHHHEEECCCCCHHHHHH
T ss_conf 7888999875413799821899999999989986047977999626267--777--888611754211038963999999
Q ss_pred HHHHHHHH
Q ss_conf 99997898
Q gi|254780877|r 349 ILRGLKER 356 (853)
Q Consensus 349 iL~gl~~~ 356 (853)
||++-...
T Consensus 335 IlkscieE 342 (423)
T KOG0744 335 ILKSCIEE 342 (423)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 297
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.85 E-value=0.00027 Score=53.90 Aligned_cols=152 Identities=23% Similarity=0.352 Sum_probs=86.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCC-
Q ss_conf 29853333357899999996336--777866895288740777999999987348998444574378873135421745-
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAK- 250 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~- 250 (853)
....+-+||-....+++.+.+.+ ...-++++.||+|+||+-++.-+. .+.... .+.-.++++-+.+-.+.-
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH-~~s~r~-----~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIH-ALSARR-----AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-HHHHCC-----CCCCEEEEEHHHHCCCHHH
T ss_conf 2156666356888999999998618999847986688753889999999-861213-----5898799777773767777
Q ss_pred ----------CCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------C
Q ss_conf ----------42024545899999986079976999636277302666554335888876531246-------------6
Q gi|254780877|r 251 ----------FRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG-------------E 307 (853)
Q Consensus 251 ----------~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG-------------~ 307 (853)
|-|-.+. =.++++ .++|. +||.||||.+--.| =-.|--.|..| +
T Consensus 148 ~eLFG~~kGaftGa~~~-k~Glfe---~A~GG-tLfLDEI~~LP~~~--------Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AELFGHEKGAFTGAQGG-KAGLFE---QANGG-TLFLDEIHRLPPEG--------QEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HHHHCCCCCEEECCCCC-CCCHHE---ECCCC-EEEHHHHHHCCHHH--------HHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 77732000000256678-676420---52797-77656365379858--------9999999871865766888886777
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHH
Q ss_conf 04899744899999730011132023111115777678
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTD 345 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~ 345 (853)
.|+|+|||-+==++.+.. .-|.||--++.|+=|+..+
T Consensus 215 VRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 215 VRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRE 251 (403)
T ss_pred CEEEECCCCCHHHHHHHH-CCHHHHHCCCEECCCCHHH
T ss_conf 404513566879998740-5255641675431897243
No 298
>PRK06921 hypothetical protein; Provisional
Probab=97.85 E-value=2.1e-05 Score=62.94 Aligned_cols=118 Identities=19% Similarity=0.316 Sum_probs=73.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEH
Q ss_conf 2898726786168899999998723776-530022447740345320130477112035667742113221564102202
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDE-NSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFD 677 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~-~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~D 677 (853)
.+++|.|++|+|||.||-++|..|.... ...+-+...++... |-.. |-.++ ...+.++.- -|+++|
T Consensus 117 ~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~-----lk~~---~~~~~---~~l~~~~~~--dlLIID 183 (265)
T PRK06921 117 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD-----LKDD---FDLLE---AKLNRMKKV--EVLFID 183 (265)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-----HHHH---HHHHH---HHHHHHHCC--CEEEEE
T ss_conf 6279972898988999999999999962971999887999999-----9988---88899---999986329--999982
Q ss_pred HH-------HHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHH
Q ss_conf 14-------414989999999984045788799977830331559548512687640326799999999
Q gi|254780877|r 678 EI-------EKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGI 739 (853)
Q Consensus 678 Ei-------EKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~ 739 (853)
.+ |+...-..+.++++++.=.+ .+--+|.|||+.-+.+.+..+.....+.+.
T Consensus 184 DLfk~~~G~e~~te~~~~~lf~iIN~Ry~----------~~kptIiSSNl~~~~L~~i~e~i~SRi~em 242 (265)
T PRK06921 184 DLFKPVNGKPRATEWQIEQTYSVVNYRYL----------NHKPILISSELTIDELLDIDEALGSRIVEM 242 (265)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 21223479878988999999999999997----------699989986899899987637988889997
No 299
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00028 Score=53.78 Aligned_cols=113 Identities=26% Similarity=0.365 Sum_probs=83.2
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH----HHHHHH--
Q ss_conf 99999963367778668952887407779999999873489984445743788731354217454202----454589--
Q gi|254780877|r 187 MRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE----FEERLK-- 260 (853)
Q Consensus 187 I~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~----~e~r~~-- 260 (853)
++-+++.|-.....|.+++|+||||||++...+|+.+..|-- .+..+++.-+|-.+=+|| ..+|- +-.|+.
T Consensus 125 ~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVl 201 (308)
T COG3854 125 ANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVL 201 (308)
T ss_pred CHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC--CCCCCEEEEEECCCHHHC-CCCCCCHHHHHHHHHHC
T ss_conf 218899998437224699659988707799999998631511--267732899715004303-43588603232210104
Q ss_pred -------HHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE
Q ss_conf -------999998607997699963627730266655433588887653124660489974
Q gi|254780877|r 261 -------SLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT 314 (853)
Q Consensus 261 -------~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT 314 (853)
.+|.-+.... +-++.+|||-+.. |+-. +.-++.+| .++|++.
T Consensus 202 d~cpk~~gmmmaIrsm~-PEViIvDEIGt~~---------d~~A-~~ta~~~G-Vkli~Ta 250 (308)
T COG3854 202 DPCPKAEGMMMAIRSMS-PEVIIVDEIGTEE---------DALA-ILTALHAG-VKLITTA 250 (308)
T ss_pred CCCHHHHHHHHHHHHCC-CCEEEEECCCCHH---------HHHH-HHHHHHCC-CEEEEEE
T ss_conf 65617888999999549-9579983436477---------7999-99998548-5899950
No 300
>KOG0651 consensus
Probab=97.84 E-value=5.8e-05 Score=59.29 Aligned_cols=123 Identities=24% Similarity=0.452 Sum_probs=73.1
Q ss_pred HHCCHHHHHHHHHHHH--------HHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 7459489999999999--------87410123656651289872678616889999999872377653002244774034
Q gi|254780877|r 569 SVIGQSAAVESVSNAL--------RRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK 640 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~--------~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~ 640 (853)
.|-|--..+....+.| ...+.|++. |.| .++-||+|.|||-+|+++|..+ .-+++..-+|+.-
T Consensus 133 ~~ggl~~qirelre~ielpl~np~lf~rvgIk~---Pkg-~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv-- 203 (388)
T KOG0651 133 NVGGLFYQIRELREVIELPLTNPELFLRVGIKP---PKG-LLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALV-- 203 (388)
T ss_pred HHCCHHHHHHHHHHHEEEECCCCHHCCCCCCCC---CCE-EEEECCCCCCHHHHHHHHHHHC---CCCEEEEEHHHHH--
T ss_conf 717838888998865574024810023457778---825-6876799986459999999865---9854774476663--
Q ss_pred CCCCHHHCCCCHHCCCCCCCCCC-----HHHHCCCCCEEEEHHHHH-----------CCHHHHHHHHHHHHCCEEECCCC
Q ss_conf 53201304771120356677421-----132215641022021441-----------49899999999840457887999
Q gi|254780877|r 641 HSVSRLIGSPPGYVGYEEGGALT-----EAVRRHPYQVVLFDEIEK-----------AHSDVHNILLQVLDDGRLTDSQG 704 (853)
Q Consensus 641 ~~vs~LiGappGYvG~~~gg~Lt-----e~vr~~P~sVil~DEiEK-----------ah~~v~~~llqild~G~ltd~~G 704 (853)
++-+|- .+.|. .|-...| |++..|||+- +...|+..|+.++|.=.=.|..|
T Consensus 204 ---~kyiGE---------saRlIRemf~yA~~~~p-ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~ 270 (388)
T KOG0651 204 ---DKYIGE---------SARLIRDMFRYAREVIP-CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLH 270 (388)
T ss_pred ---HHHCCC---------HHHHHHHHHHHHHHHCC-EEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCC
T ss_conf ---300265---------78899999977865275-57751012311457733555205999999999987421401206
Q ss_pred CEEECCCCEEEECCC
Q ss_conf 778303315595485
Q gi|254780877|r 705 RTVDFRNTLIIMTSN 719 (853)
Q Consensus 705 ~~v~f~n~iii~TsN 719 (853)
| .-+|||+|
T Consensus 271 r------Vk~ImatN 279 (388)
T KOG0651 271 R------VKTIMATN 279 (388)
T ss_pred C------CCEEEECC
T ss_conf 6------31798538
No 301
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00017 Score=55.43 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=100.7
Q ss_pred HHHHHHHC-CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHH-------------CCC--EEEEEEHHHHHCCCCC
Q ss_conf 99999633-6777866895288740777999999987348998444-------------574--3788731354217454
Q gi|254780877|r 188 RRAIQVLS-RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESL-------------KGK--RLMALDMGALIAGAKF 251 (853)
Q Consensus 188 ~~~~~iL~-r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l-------------~~~--~i~~ld~~~l~ag~~~ 251 (853)
+++.+.+. .|--.--++.|++|+||++++..+|+.+.-.+ |..- .|. -++.++.. .|.+
T Consensus 11 ~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~-~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~---~~k~- 85 (324)
T PRK06871 11 QQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQA-PGDEQPCGQCHSCHLFQAGNHPDFHILEPI---DGKD- 85 (324)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEECC---CCCC-
T ss_conf 99999998699543787689999789999999999982899-999998888989999973899987998467---8887-
Q ss_pred CCHHHHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCC--EEEEEEECHHHHHHHHHCC
Q ss_conf 202454589999998607---99769996362773026665543358888765312466--0489974489999973001
Q gi|254780877|r 252 RGEFEERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGE--LHCIGATTLDEYRKYIEKD 326 (853)
Q Consensus 252 rg~~e~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~--l~~IgaTT~~Eyrk~iEkD 326 (853)
-| =+-++.+++.+... .+.-|.+||+.|.+- ..|+|-|--.|..-- .-+|=.|+.- .+. =
T Consensus 86 I~--vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~--------~~AaNALLKtLEEPp~~~~fiL~t~~~--~~l---l 150 (324)
T PRK06871 86 IG--VDQVREINEKVSQFAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLS--ASL---L 150 (324)
T ss_pred CC--HHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH--------HHHHHHHHHHHCCCCCCEEEEEEECCC--CCC---C
T ss_conf 88--99999999998646220596699975888857--------999999999833898783899987870--103---2
Q ss_pred HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 1132023111115777678999999978986541496101589999986333202457674778999999
Q gi|254780877|r 327 PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 (853)
Q Consensus 327 ~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDe 396 (853)
+.+-.|-|.+.+..|+.+++...|+.-. ...++++..+.++|. --|-+|+.++.+
T Consensus 151 ~TI~SRCq~~~~~~p~~~~~~~wL~~~~---------~~~~~~~~~al~~~~------g~pl~A~~~~~~ 205 (324)
T PRK06871 151 ATIYSRCQTWLIHVPEEQIALDWLQAQS---------SGEIQEIQTALRINY------GRPLLALTFLEQ 205 (324)
T ss_pred CHHHHCCCCEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHCC------CCHHHHHHHHCC
T ss_conf 4086266120089949999999999746---------887299999999769------987999998687
No 302
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.82 E-value=0.00011 Score=57.19 Aligned_cols=94 Identities=27% Similarity=0.384 Sum_probs=63.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC--------C--CCCCCHHHHHHHHHHHHHH
Q ss_conf 77866895288740777999999987348998444574378873135421--------7--4542024545899999986
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA--------G--AKFRGEFEERLKSLLCEIR 267 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a--------g--~~~rg~~e~r~~~i~~~~~ 267 (853)
-..|.+++|++|||||.++..||..+-.+.. .++.+|++.+.. | ..|.|-=|.. .+.+.+.
T Consensus 2 p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~-------~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G--~l~~~v~ 72 (168)
T pfam07724 2 PIGSFLFLGPTGVGKTELAKALAELLFGDER-------ALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG--QLTEAVR 72 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-------CEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCC--CHHHHHH
T ss_conf 8379998898998999999999999679853-------448855756542569998705899872624265--0789998
Q ss_pred HCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 079976999636277302666554335888876531246604
Q gi|254780877|r 268 SEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELH 309 (853)
Q Consensus 268 ~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~ 309 (853)
..+ +-|+|+|||.-. ..++-|.|-+.|..|.++
T Consensus 73 ~~p-~~VillDEIeKa--------~~~V~~~LL~ild~g~~~ 105 (168)
T pfam07724 73 RKP-YSIVLIDEIEKA--------HPGVQNDLLQILEGGTLT 105 (168)
T ss_pred HCC-CCEEEEHHHHHH--------CHHHHHHHHHHCCCCCEE
T ss_conf 389-848986577665--------899999999870587063
No 303
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00018 Score=55.38 Aligned_cols=163 Identities=18% Similarity=0.255 Sum_probs=97.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHH------C-----------CCEEEEEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 866895288740777999999987348998444------5-----------74378873135421745420245458999
Q gi|254780877|r 200 NNPVLIGDPGVGKTAIIEGLASRIINGDIPESL------K-----------GKRLMALDMGALIAGAKFRGEFEERLKSL 262 (853)
Q Consensus 200 ~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l------~-----------~~~i~~ld~~~l~ag~~~rg~~e~r~~~i 262 (853)
..-++.|++|+||.+++..+|+.+.-.+ |... . |.+++.-+- +|.+- | =+.++.+
T Consensus 25 HA~L~~G~~G~Gk~~la~~~a~~llC~~-~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~----~~~~I-~--IdqIR~l 96 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRYLLCQQ-PQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK----GKSSL-G--VDAVREV 96 (334)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEECCCC----CCCCC-C--HHHHHHH
T ss_conf 4675479999889999999999981899-9999999999789998668999847753422----34559-9--9999999
Q ss_pred HHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECC
Q ss_conf 9998607---9976999636277302666554335888876531246604899744899999730011132023111115
Q gi|254780877|r 263 LCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVG 339 (853)
Q Consensus 263 ~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~ 339 (853)
.+.+..+ .+.-|.+||+.+.+ ...|||-|-=.|..-.=.++---+.+.+... -+-+-.|-|.+.+.
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~Ae~m--------n~~AaNaLLKtLEEPp~~t~~iL~t~~~~~l---LpTI~SRCq~~~~~ 165 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALL--------TDAAANALLKTLEEPPEKTWFFLACREPARL---LATLRSRCRLHYLA 165 (334)
T ss_pred HHHHHHCCCCCCCEEEEECCHHHH--------CHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CCHHHHHCCCCCCC
T ss_conf 999843665699479997667775--------9999999998612799884999866985657---23887523041589
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 777678999999978986541496101589999986333202457674778999999
Q gi|254780877|r 340 EPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 (853)
Q Consensus 340 Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDe 396 (853)
.|+.+++...|..- +..+++....++.+|.-- |-+|.++++.
T Consensus 166 ~~~~~~~~~wL~~~---------~~~~~~~~~~al~la~Gs------pl~A~~l~~~ 207 (334)
T PRK07993 166 PPPEQYALTWLSRE---------VTMSQEALLAALRLSAGA------PGAALALLQP 207 (334)
T ss_pred CCCHHHHHHHHHHH---------CCCCHHHHHHHHHHCCCC------HHHHHHHHCC
T ss_conf 97999999999873---------689889999999984998------9999998256
No 304
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00048 Score=51.86 Aligned_cols=120 Identities=20% Similarity=0.278 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHCCCCCCCH-HHCC
Q ss_conf 48999999999987410123656651289872678616889999999872377653--00224477403453201-3047
Q gi|254780877|r 573 QSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS--MIRIDMSEYMEKHSVSR-LIGS 649 (853)
Q Consensus 573 q~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~--lir~dMsey~e~~~vs~-LiGa 649 (853)
|+.+++.+.+++...| ---.|||.| |+||+.+|+.+|..|+-.+.. .-.-.+... .+ .-|.
T Consensus 7 Qp~i~~~l~~~i~~~r--------l~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C------~~i~~~~ 70 (290)
T PRK07276 7 QPKLFQRFQTILEQDR--------LNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRSC------RLIEQGD 70 (290)
T ss_pred HHHHHHHHHHHHHCCC--------CCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHCCC
T ss_conf 8999999999998499--------650542169--86879999999999818999998989889999------9987699
Q ss_pred CCHHCC-CCCCC-CCCHHHH-------CCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEE
Q ss_conf 711203-56677-4211322-------156----4102202144149899999999840457887999778303315595
Q gi|254780877|r 650 PPGYVG-YEEGG-ALTEAVR-------RHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIM 716 (853)
Q Consensus 650 ppGYvG-~~~gg-~Lte~vr-------~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~ 716 (853)
.|-+.- ..+|. .=++.|| ..| |-|+.+|+.|+.+++-.|.||-.|+|-- .|++||+
T Consensus 71 hpDv~~i~~~~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp-----------~~t~~iL 139 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEEPQ-----------SEIYIFL 139 (290)
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CCCEEEE
T ss_conf 98713771677757688999999998445613782799977656529999999999703898-----------8837998
Q ss_pred CCC
Q ss_conf 485
Q gi|254780877|r 717 TSN 719 (853)
Q Consensus 717 TsN 719 (853)
+|+
T Consensus 140 lt~ 142 (290)
T PRK07276 140 LTN 142 (290)
T ss_pred EEC
T ss_conf 879
No 305
>KOG0740 consensus
Probab=97.77 E-value=0.00054 Score=51.43 Aligned_cols=180 Identities=24% Similarity=0.297 Sum_probs=91.1
Q ss_pred HCCHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH
Q ss_conf 45948999999999987410---123656651289872678616889999999872377653002244774034532013
Q gi|254780877|r 570 VIGQSAAVESVSNALRRFRA---GLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~~~---gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L 646 (853)
+-|.+.|-..+-.++...-. .+..-+.|..+.|+.||+|+|||-|++++|-..-- .+ ||- |.|-|
T Consensus 155 i~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a---tf--f~i-------SassL 222 (428)
T KOG0740 155 IAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGA---TF--FNI-------SASSL 222 (428)
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCC---EE--EEC-------CHHHH
T ss_conf 7405668998654232204553765235445311120058988447999999862066---57--630-------68886
Q ss_pred HCCCCHHCCCCCC-CCCCHHH-HCCCCCEEEEHHHHH--------CCHHH----HHHHHHHHHCCEEECCCCCEEECCCC
Q ss_conf 0477112035667-7421132-215641022021441--------49899----99999984045788799977830331
Q gi|254780877|r 647 IGSPPGYVGYEEG-GALTEAV-RRHPYQVVLFDEIEK--------AHSDV----HNILLQVLDDGRLTDSQGRTVDFRNT 712 (853)
Q Consensus 647 iGappGYvG~~~g-g~Lte~v-r~~P~sVil~DEiEK--------ah~~v----~~~llqild~G~ltd~~G~~v~f~n~ 712 (853)
.+- |||-.|- +....+| |..-+|||..|||++ +|+.. ..+|+|.. |..+-... +.
T Consensus 223 tsK---~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~--~~~s~~~d------rv 291 (428)
T KOG0740 223 TSK---YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD--GKNSAPDD------RV 291 (428)
T ss_pred HHH---CCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHC--CCCCCCCC------EE
T ss_conf 532---46707789999999987139708984025678863687545445556557776540--44578887------07
Q ss_pred EEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 55954851268764032679999999998628857726668158628899899999999999999999985798999988
Q gi|254780877|r 713 LIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDD 792 (853)
Q Consensus 713 iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~ 792 (853)
++|-|||. +.+..+ +++. |+..++.+..-+.+....+....| .++ .-.+++
T Consensus 292 lvigaTN~--------P~e~De----a~~R--------rf~kr~yiplPd~etr~~~~~~ll-------~~~--~~~l~~ 342 (428)
T KOG0740 292 LVIGATNR--------PWELDE----AARR--------RFVKRLYIPLPDYETRSLLWKQLL-------KEQ--PNGLSD 342 (428)
T ss_pred EEEECCCC--------CHHHHH----HHHH--------HHCCEEEECCCCHHHHHHHHHHHH-------HHC--CCCCCH
T ss_conf 99815888--------367788----8888--------710315535988789999999999-------768--787417
Q ss_pred HHHHHHHHC
Q ss_conf 999999970
Q gi|254780877|r 793 QVIDWLSCR 801 (853)
Q Consensus 793 ~~~~~l~~~ 801 (853)
.-++.|++.
T Consensus 343 ~d~~~l~~~ 351 (428)
T KOG0740 343 LDISLLAKV 351 (428)
T ss_pred HHHHHHHHH
T ss_conf 789999988
No 306
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.76 E-value=0.0011 Score=49.00 Aligned_cols=77 Identities=27% Similarity=0.492 Sum_probs=43.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHH-HH--CCCC-CCCCCCCHH---HHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC-CC
Q ss_conf 2898726786168899999998-72--3776-530022447---740345320130477112035667742113221-56
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLAR-LL--FDDE-NSMIRIDMS---EYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR-HP 670 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~-~l--f~~~-~~lir~dMs---ey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~-~P 670 (853)
++++|+||||||||.++-.||- +. +|.. -+||.+|-- -.-.=.+.++++|-| =||=++. ..|.+++.+ ..
T Consensus 195 ~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp-~~vv~~~-~~l~~~l~~~~~ 272 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVP-VKVARDP-KELAKALERLRD 272 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCE-EEEECCH-HHHHHHHHHCCC
T ss_conf 27999778887578899999999999738996799980777678999999999995974-8993999-999999986579
Q ss_pred CCEEEEH
Q ss_conf 4102202
Q gi|254780877|r 671 YQVVLFD 677 (853)
Q Consensus 671 ~sVil~D 677 (853)
+-+||.|
T Consensus 273 ~d~IlID 279 (282)
T TIGR03499 273 KDLILID 279 (282)
T ss_pred CCEEEEE
T ss_conf 8999981
No 307
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00029 Score=53.63 Aligned_cols=163 Identities=18% Similarity=0.257 Sum_probs=94.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCC----CE---------EEEEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 7786689528874077799999998734899844457----43---------7887313542174542024545899999
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKG----KR---------LMALDMGALIAGAKFRGEFEERLKSLLC 264 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~----~~---------i~~ld~~~l~ag~~~rg~~e~r~~~i~~ 264 (853)
--+--++.|++|+||++++..+|+.+.-.+-+..-.| ++ ++.+... .+.+.- -=+.++.+.+
T Consensus 24 l~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe---~~~k~I--~vd~IR~l~~ 98 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPE---KEGKSI--TVEQIRQCNR 98 (319)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECC---CCCCCC--CHHHHHHHHH
T ss_conf 63067667999857999999999998089999998877877999875899982366123---356768--7999999999
Q ss_pred HHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECC
Q ss_conf 98607---997699963627730266655433588887653124--6604899744899999730011132023111115
Q gi|254780877|r 265 EIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GELHCIGATTLDEYRKYIEKDPALARRFQSLLVG 339 (853)
Q Consensus 265 ~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~ 339 (853)
.+..+ .|.-|.+||+.|.+ +..|+|-|--.|.. +.--+|=.|+.- .+. =+.+-.|-|++.+.
T Consensus 99 ~~~~~~~~g~~KV~iI~~ae~m--------~~~AaNALLKtLEEPp~~t~fiL~t~~~--~~l---l~TI~SRCq~~~l~ 165 (319)
T PRK06090 99 LAQESSQLGGYRLFVIEPADAM--------NESASNALLKTLEEPAPNCLFLLVTHNQ--KRL---LPTIVSRCQQWVVT 165 (319)
T ss_pred HHHHCCCCCCCEEEEECCHHHC--------CHHHHHHHHHHHCCCCCCEEEEEEECCH--HHC---CCCHHHCCCCCCCC
T ss_conf 9754521069369998144434--------9999999999842899883899876851--208---64187614450289
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 777678999999978986541496101589999986333202457674778999999
Q gi|254780877|r 340 EPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 (853)
Q Consensus 340 Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDe 396 (853)
.|+.+++...|.. +++...+.| .+++ .+ -|=+|++++..
T Consensus 166 ~p~~~~~~~WL~~--------q~~~~~~~a----L~l~----~g--~Pl~a~~~l~~ 204 (319)
T PRK06090 166 PPSTDQAMQWLKG--------QGISVPAYA----LKLN----MG--SPLKTLAMMKE 204 (319)
T ss_pred CCCHHHHHHHHHH--------HCCCCHHHH----HHHC----CC--CCHHHHHHHCC
T ss_conf 9599999999988--------487557999----9884----99--94999998638
No 308
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.75 E-value=0.00012 Score=56.63 Aligned_cols=49 Identities=24% Similarity=0.580 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCC---EEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 33335789999999633677786---68952887407779999999873489
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNN---PVLIGDPGVGKTAIIEGLASRIINGD 227 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n---~~lvGe~GvGKtaive~la~~i~~~~ 227 (853)
|++||+.|+.++.+.++|..+.. .+++|++|.|||+||..+..+|....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~ 52 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR 52 (849)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 9787076899999999998377716999875587748999999999874240
No 309
>KOG1969 consensus
Probab=97.75 E-value=0.00038 Score=52.62 Aligned_cols=88 Identities=20% Similarity=0.269 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHCCC-CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf 333578999999963367-7786689528874077799999998734899844457437887313542174542024545
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRR-TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEER 258 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~-~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r 258 (853)
--++++|+-.+.--.++| .|.=.+|-|+||.|||++++-.|.. .|+++++++.+-==+ --.+++|
T Consensus 306 ~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkq----------aGYsVvEINASDeRt----~~~v~~k 371 (877)
T KOG1969 306 KGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQ----------AGYSVVEINASDERT----APMVKEK 371 (877)
T ss_pred CCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH----------CCCEEEEECCCCCCC----HHHHHHH
T ss_conf 46643455632468667984006875368878724799999986----------285488732555434----7889999
Q ss_pred HHHHHHHHHHC---CCCEEEEECCHH
Q ss_conf 89999998607---997699963627
Q gi|254780877|r 259 LKSLLCEIRSE---DGEIILFIDELH 281 (853)
Q Consensus 259 ~~~i~~~~~~~---~~~~ilfide~h 281 (853)
+-+.+.--..- ..++-|.||||-
T Consensus 372 I~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969 372 IENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred HHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 99988641122568886359984246
No 310
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.74 E-value=0.00014 Score=56.15 Aligned_cols=178 Identities=24% Similarity=0.447 Sum_probs=110.6
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC-C-------CCCCCCCHHHHCCCC
Q ss_conf 45948999999999987410123656651289872678616889999999872377-6-------530022447740345
Q gi|254780877|r 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD-E-------NSMIRIDMSEYMEKH 641 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~-~-------~~lir~dMsey~e~~ 641 (853)
+||-+.-++...+-+-| +..|=| ||+|=+|||||-+|-=||.-...+ . ..+-.+||+..
T Consensus 210 LIGRE~EleRtiQvLCR-----R~KNNP----l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~L---- 276 (774)
T TIGR02639 210 LIGREDELERTIQVLCR-----RKKNNP----LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTL---- 276 (774)
T ss_pred CCCCHHHHHHHHHHHCC-----CCCCCC----CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHH----
T ss_conf 34566887423332034-----567887----20448886448999999998641564670024783454043456----
Q ss_pred CCCHHHCCCCHHCC-CCCC-CCCCHHHHCCCCC-EEEEHHHHH---------CCHHHHHHHHHHHHCCEEECCCCCEEEC
Q ss_conf 32013047711203-5667-7421132215641-022021441---------4989999999984045788799977830
Q gi|254780877|r 642 SVSRLIGSPPGYVG-YEEG-GALTEAVRRHPYQ-VVLFDEIEK---------AHSDVHNILLQVLDDGRLTDSQGRTVDF 709 (853)
Q Consensus 642 ~vs~LiGappGYvG-~~~g-g~Lte~vr~~P~s-Vil~DEiEK---------ah~~v~~~llqild~G~ltd~~G~~v~f 709 (853)
|=|+ =|=| |++- =.-.+-|.+.|.. |+..|||+= .|=|-=|+|=-+|.+|.|. .
T Consensus 277 ----LAGT--KYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iR-----C--- 342 (774)
T TIGR02639 277 ----LAGT--KYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIR-----C--- 342 (774)
T ss_pred ----HHHC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEE-----E---
T ss_conf ----4102--4542478999999999852899954664110103317878751552443211253078778-----6---
Q ss_pred CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCC--HHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 331559548512687640326799999999986288--577266681586288998999999999999999999857989
Q gi|254780877|r 710 RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFK--PEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS 787 (853)
Q Consensus 710 ~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~--peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~ 787 (853)
+||.-. ++-+++|- -.|--|+..|=+=.| |.++-.+|+ +.|..+.+. --.
T Consensus 343 ----------IGsTTy------------~EY~~~FeKDrALsRRFQKIDv~EP-s~eet~~IL----kGLk~~YE~-fH~ 394 (774)
T TIGR02639 343 ----------IGSTTY------------EEYKNHFEKDRALSRRFQKIDVGEP-SIEETVKIL----KGLKEQYEE-FHH 394 (774)
T ss_pred ----------ECCCCH------------HHHHCHHHCCCCCCCCCCEECCCCC-CHHHHHHHH----HHHHHHHHC-CCC
T ss_conf ----------226524------------8641110102021654233117957-888999999----865542013-250
Q ss_pred EEECHHHHHHHHHCC
Q ss_conf 999889999999708
Q gi|254780877|r 788 MDFDDQVIDWLSCRG 802 (853)
Q Consensus 788 l~~~~~~~~~l~~~~ 802 (853)
+.|++++++.-|+.+
T Consensus 395 V~Y~~eal~~Av~LS 409 (774)
T TIGR02639 395 VKYSDEALEAAVELS 409 (774)
T ss_pred EECCHHHHHHHHHHH
T ss_conf 113869999999998
No 311
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0049 Score=43.65 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=99.5
Q ss_pred HHHCC-HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC--C---CCCCHHHHCC-C
Q ss_conf 67459-48999999999987410123656651289872678616889999999872377653--0---0224477403-4
Q gi|254780877|r 568 KSVIG-QSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS--M---IRIDMSEYME-K 640 (853)
Q Consensus 568 ~~v~g-q~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~--l---ir~dMsey~e-~ 640 (853)
.+++| |++++..+.+++...| .--++||.||.|+||+.+|+++|+.|...+.. . ..-.+.-+.. .
T Consensus 5 ~~~~~~Q~~i~~~L~~~i~~~r--------l~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~ 76 (329)
T PRK08058 5 EQLTALQPIVVKMLQNSIAKNR--------LAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGN 76 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 8888318999999999998599--------66156557899988999999999997399999999887888999987699
Q ss_pred CCCCHHHCCCCH-HCCCCCCCCCCHHHHCCCC----CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEE
Q ss_conf 532013047711-2035667742113221564----10220214414989999999984045788799977830331559
Q gi|254780877|r 641 HSVSRLIGSPPG-YVGYEEGGALTEAVRRHPY----QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLII 715 (853)
Q Consensus 641 ~~vs~LiGappG-YvG~~~gg~Lte~vr~~P~----sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii 715 (853)
|.=-..+ .|-| -++-|+=-.|.+.+..+|+ -|+++|+.|+.+.+-.|.||-.|+|=- .+|+||
T Consensus 77 HPD~~~i-~p~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp-----------~~t~fI 144 (329)
T PRK08058 77 HPDVHLV-APDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-----------GDTTAI 144 (329)
T ss_pred CCCEEEE-CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCC-----------CCCEEE
T ss_conf 9976774-5661407799999999996438757886799973477629999999999864689-----------786799
Q ss_pred ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHH
Q ss_conf 5485126876403267999999999862885772666815862889989999999
Q gi|254780877|r 716 MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIV 770 (853)
Q Consensus 716 ~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~ 770 (853)
++|+--. ...|-.+.|. .++.|.|++.+++...+
T Consensus 145 L~t~~~~--------------------~lLpTI~SRC-q~i~f~~~~~~~i~~~L 178 (329)
T PRK08058 145 LLTENKH--------------------QILPTILSRC-QVVEFRPLPPESLIQRL 178 (329)
T ss_pred EEECCHH--------------------HHHHHHHHCC-EEEECCCCCHHHHHHHH
T ss_conf 8729966--------------------6436886314-25658899999999999
No 312
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.73 E-value=0.0024 Score=46.15 Aligned_cols=140 Identities=21% Similarity=0.226 Sum_probs=81.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHH-----------HHHHHHHHHHCC
Q ss_conf 689528874077799999998734899844457437887313542174542024545-----------899999986079
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEER-----------LKSLLCEIRSED 270 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r-----------~~~i~~~~~~~~ 270 (853)
+++.|+||+|||+++.-+|...++|+.+.. ...++-+.+..+-. .+.. -+++- ...+...+...+
T Consensus 3 i~i~G~aG~GKTtll~kl~~~wa~g~~~~~--~~~vf~~~~r~~~~-~~~~-sl~~ll~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T pfam05729 3 VILQGEAGSGKTTLLQKLALLWAQGKLPQD--FDFVFFLPCRELSR-SGEA-SLADLLFSQWPEPAAPVSEVWAVILELP 78 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCC--CCEEEEEEHHHHCC-CCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 999827989899999999999986984369--72899999567077-7668-9999999876774576378999998397
Q ss_pred CCEEEEECCHHHHCCCCCC-CCCCC----HHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHH
Q ss_conf 9769996362773026665-54335----888876531246604899744899999730011132023111115777678
Q gi|254780877|r 271 GEIILFIDELHVLVGAGKT-DGAMD----ASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTD 345 (853)
Q Consensus 271 ~~~ilfide~h~~~gaG~~-~g~~D----aan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~ 345 (853)
+++.+.+|.+.-+-..-.. +.... .+|+|+..+-.+ -+++-+|.|.-|++ .+..-+.|+.+.|..-|.++
T Consensus 79 ~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~lp~-~~vliTsRp~~~~~----l~~~~~~~~~~ei~GFs~~~ 153 (165)
T pfam05729 79 ERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKLLPG-ASLLLTSRPDALRD----LRRGLEEPRYLEVLGFSEED 153 (165)
T ss_pred CCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEEECCCHHHH----HHHHCCCCCEEEECCCCHHH
T ss_conf 72899964845514443564445779999999984152788-64999968037988----57764887189988999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780877|r 346 TISIL 350 (853)
Q Consensus 346 t~~iL 350 (853)
-..-+
T Consensus 154 ~~~yi 158 (165)
T pfam05729 154 RKQYV 158 (165)
T ss_pred HHHHH
T ss_conf 99999
No 313
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00062 Score=50.92 Aligned_cols=212 Identities=19% Similarity=0.392 Sum_probs=114.9
Q ss_pred HHHHHHCCHHH-HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHCCCC
Q ss_conf 47767459489-999999999874101236566512898726786168899999998723776530--022447740345
Q gi|254780877|r 565 EISKSVIGQSA-AVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSM--IRIDMSEYMEKH 641 (853)
Q Consensus 565 ~l~~~v~gq~~-ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~l--ir~dMsey~e~~ 641 (853)
....-|+|-.. ...+++.++.. .|.+|-.-+++.||+|.|||.|..++.........+. +-+.-+.|....
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~------~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~ 158 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAE------NPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF 158 (408)
T ss_pred CHHHEEECCCHHHHHHHHHHHHH------CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 55422047744999999999875------668868957998799997899999999999862998648850489989999
Q ss_pred CCCHHHCCCCHHCCCCCCCCCCHHHHCC-CCCEEEEHHHHHCCH------HHHHHHHHHHHCCEEECCCCCEEECCCCEE
Q ss_conf 3201304771120356677421132215-641022021441498------999999998404578879997783033155
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEGGALTEAVRRH-PYQVVLFDEIEKAHS------DVHNILLQVLDDGRLTDSQGRTVDFRNTLI 714 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~gg~Lte~vr~~-P~sVil~DEiEKah~------~v~~~llqild~G~ltd~~G~~v~f~n~ii 714 (853)
|+-+-. ++ ++.-|++ -.-++|+|.|+--.. ..|++|=.+.++|. -|
T Consensus 159 -v~a~~~----------~~--~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--------------qI 211 (408)
T COG0593 159 -VKALRD----------NE--MEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--------------QI 211 (408)
T ss_pred -HHHHHH----------HH--HHHHHHHHCCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCCC--------------EE
T ss_conf -999885----------04--8888876426735551386756771579999999998885088--------------79
Q ss_pred EECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC--CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 954851268764032679999999998628857726668--158628899899999999999999999985798999988
Q gi|254780877|r 715 IMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD--EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDD 792 (853)
Q Consensus 715 i~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid--~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~ 792 (853)
++||.--- .+. ..+.|.+..|+. -++.-.|++.+....|+.+ +...++ +.+++
T Consensus 212 vltsdr~P-------~~l---------~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k-------ka~~~~--~~i~~ 266 (408)
T COG0593 212 VLTSDRPP-------KEL---------NGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK-------KAEDRG--IEIPD 266 (408)
T ss_pred EEECCCCC-------HHH---------CCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHH-------HHHHCC--CCCCH
T ss_conf 99707883-------221---------103588998986305775279888999999999-------998658--88887
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHH----------HHHHHHHHHHHCCCCCCCC
Q ss_conf 99999997089822062157999998----------7334999999708688978
Q gi|254780877|r 793 QVIDWLSCRGYDPSYGARPLKRVIQR----------YIQNPLAERVLSQTISDGD 837 (853)
Q Consensus 793 ~~~~~l~~~~~~~~~GaR~l~r~i~~----------~i~~~la~~il~~~~~~g~ 837 (853)
++.+|++.+. +.. .|.|..++.+ .|.-+++..+|......+.
T Consensus 267 ev~~~la~~~-~~n--vReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 267 EVLEFLAKRL-DRN--VRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHHHHHHH-HCC--HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999970-030--999999999999999853875769999999998640145
No 314
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.69 E-value=0.0016 Score=47.50 Aligned_cols=145 Identities=23% Similarity=0.305 Sum_probs=71.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHHHCCCC
Q ss_conf 777866895288740777999999987348--9984445743788731354217454202--454589999998607997
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIAGAKFRGE--FEERLKSLLCEIRSEDGE 272 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--~e~r~~~i~~~~~~~~~~ 272 (853)
..+.|.+|||-||+|||+|-..||+++--. |....+. ..+..++..+.+- .|| |-+.=..++.++...+ +
T Consensus 2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D~~Ie--~~~g~si~~if~~---~Ge~~FR~~E~~~l~~l~~~~-~ 75 (175)
T PRK00131 2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTDHLIE--ARAGKSIPEIFEE---EGEAGFRELEEEVLAELLQRH-N 75 (175)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHH--HHHCCCHHHHHHH---HCHHHHHHHHHHHHHHHCCCC-C
T ss_conf 999808988899999899999999995969023988999--7616999999998---588999999999999651479-8
Q ss_pred EEEEECCHHHHCCCCCCC-CCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHH
Q ss_conf 699963627730266655-4335888876531246604899744899999730011132023111115777678999999
Q gi|254780877|r 273 IILFIDELHVLVGAGKTD-GAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILR 351 (853)
Q Consensus 273 ~ilfide~h~~~gaG~~~-g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~ 351 (853)
.| |..|++- -.-+..+.|+ ..|- -+-=-+.+++--+-+.++. .| |+.-.+...++-..++.
T Consensus 76 ~V---------IstGGG~v~~~~~~~~L~---~~g~-vV~L~~~~e~l~~Rl~~~~--~R---Pll~~~~~~~~l~~l~~ 137 (175)
T PRK00131 76 LV---------ISTGGGAVLREENRALLR---ERGT-VVYLDASFEELLRRLARDR--NR---PLLQTEDPKEKLRALYE 137 (175)
T ss_pred EE---------EECCCCCCCCHHHHHHHH---CCCC-EEEEECCHHHHHHHHCCCC--CC---CCCCCCCHHHHHHHHHH
T ss_conf 59---------974898226889999998---1693-7998579999999864899--99---87889986999999999
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 97898654149610
Q gi|254780877|r 352 GLKERYEQHHKVRI 365 (853)
Q Consensus 352 gl~~~yE~~H~V~i 365 (853)
.-.+.|++...+.|
T Consensus 138 ~R~~~Y~~~Ad~~I 151 (175)
T PRK00131 138 ERDPLYEEVADLTI 151 (175)
T ss_pred HHHHHHHHHCCEEE
T ss_conf 99998975389999
No 315
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00065 Score=50.77 Aligned_cols=112 Identities=22% Similarity=0.340 Sum_probs=68.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 77866895288740777999999987348998444574378873135421---745420245458999999860799769
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA---GAKFRGEFEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~~e~r~~~i~~~~~~~~~~~i 274 (853)
..+|.++.|+||||||-++-++|..++.. |.+++-+.+..++. .+-..|..|+++... +.+.+ +
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~~~d---l 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LKKVD---L 170 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHH---HHHCC---E
T ss_conf 58828998999987999999999999983-------98499988599999999987455268999988---75289---8
Q ss_pred EEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHH
Q ss_conf 99636277302666554335888876531246604899744899999730
Q gi|254780877|r 275 LFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIE 324 (853)
Q Consensus 275 lfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iE 324 (853)
|+|||+-..-- ...+.-+.-+++--...+..+-+.--..+++...++-
T Consensus 171 LIiDDlG~~~~--~~~~~~~~~q~I~~r~~~~~~~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 171 LIIDDIGYEPF--SQEEADLLFQLISRRYESRSLIITSNLSFGEWDELFG 218 (254)
T ss_pred EEEECCCCCCC--CCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCC
T ss_conf 99823677668--8155879999999999730542020588278886606
No 316
>KOG0991 consensus
Probab=97.68 E-value=0.00026 Score=53.98 Aligned_cols=181 Identities=24% Similarity=0.347 Sum_probs=102.0
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCC
Q ss_conf 69987298533333578999999963367778668952887407779999999873489984445743788731354217
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAG 248 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag 248 (853)
.++.+--+++-++|-|+-++|+-.+---++-.|.++-|+||+|||+-+.-||....-...-+ -+.+|+.+.
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke-----~vLELNASd---- 88 (333)
T KOG0991 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKE-----AVLELNASD---- 88 (333)
T ss_pred HHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHH-----HHHHCCCCC----
T ss_conf 88608529988217798999999999728998667527999861648999999983806665-----763205765----
Q ss_pred CCCCCH--HHHHHHHHHHH-HHHCCC-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHH--CCCCEEEEEEECHHHHHHH
Q ss_conf 454202--45458999999-860799-76999636277302666554335888876531--2466048997448999997
Q gi|254780877|r 249 AKFRGE--FEERLKSLLCE-IRSEDG-EIILFIDELHVLVGAGKTDGAMDASNLLKPSL--ARGELHCIGATTLDEYRKY 322 (853)
Q Consensus 249 ~~~rg~--~e~r~~~i~~~-~~~~~~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~L--arG~l~~IgaTT~~Eyrk~ 322 (853)
-||= --.++|.--.. +.-.+| .-|...||...+- +|++ .-|.-.+ -..+-|++-|+-.. -|.
T Consensus 89 --eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-~gAQ-------QAlRRtMEiyS~ttRFalaCN~s--~KI 156 (333)
T KOG0991 89 --ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-AGAQ-------QALRRTMEIYSNTTRFALACNQS--EKI 156 (333)
T ss_pred --CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH-HHHH-------HHHHHHHHHHCCCCHHHHHHCCH--HHH
T ss_conf --54608999999999872034899852489961522020-6899-------99999999970632000001542--132
Q ss_pred HHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3001---113202311111577767899999997898654149610158999998633320
Q gi|254780877|r 323 IEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY 380 (853)
Q Consensus 323 iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY 380 (853)
||+= .|+- ||.++ |..+ ||.-+..- -+-.+|.|++++|++.+..+.--
T Consensus 157 iEPIQSRCAiL-Ryskl-----sd~q---iL~Rl~~v-~k~Ekv~yt~dgLeaiifta~GD 207 (333)
T KOG0991 157 IEPIQSRCAIL-RYSKL-----SDQQ---ILKRLLEV-AKAEKVNYTDDGLEAIIFTAQGD 207 (333)
T ss_pred HHHHHHHHHHH-HHCCC-----CHHH---HHHHHHHH-HHHHCCCCCCCHHHHHHHHCCCH
T ss_conf 22677345765-32226-----7899---99999999-98707887711477855441661
No 317
>PRK06620 hypothetical protein; Validated
Probab=97.68 E-value=0.0012 Score=48.57 Aligned_cols=145 Identities=20% Similarity=0.391 Sum_probs=83.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
+++..||+|.|||.|++..++.- .+.+ ++ ..+ +.+... ..+.++++|.+
T Consensus 46 ~l~I~Gp~gSGKTHL~~i~~~~~----~a~~-~~-~~~------------------------~~~~~~-~~~~~~iiddi 94 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLS----NAYI-IK-DIF------------------------FNEEIL-EKYNAFIIEDI 94 (214)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCEE-EC-HHH------------------------CCHHHH-HHCCCEEEECC
T ss_conf 59998799998899999999982----8588-15-121------------------------458788-43793798467
Q ss_pred HHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC--CEEE
Q ss_conf 41498999999998404578879997783033155954851268764032679999999998628857726668--1586
Q gi|254780877|r 680 EKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD--EIIL 757 (853)
Q Consensus 680 EKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid--~iv~ 757 (853)
|+..... |++++. .+.-.++.+++||+.-.. .. =-|.+..|+- .++.
T Consensus 95 d~~~e~~---lfhlfN----------~~~~~~~~llits~~~p~-------~~-----------~L~DL~SRl~~~~~~~ 143 (214)
T PRK06620 95 ENWQEPA---LLHIFN----------IINEKQKYLLLTSSDKSR-------NF-----------TLPDLSSRIKSVLSIL 143 (214)
T ss_pred CCCCHHH---HHHHHH----------HHHHCCCEEEEEECCCCC-------CC-----------CCCCHHHHHHCCCEEE
T ss_conf 7574679---999999----------997159879998279852-------24-----------5357899985464433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 2889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r 758 FEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 758 F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
..+.+.+.+..++.+ .++.+++.+ ++.+++||+.+. ++.| +.+.+++.+
T Consensus 144 i~~PdD~l~~~ll~k-------~~~~r~i~i--~~~vi~yl~~ri-~Rs~--~~l~~~v~~ 192 (214)
T PRK06620 144 LNSPDDELIKILIFK-------HFSISSVTI--SRQIIDFLLVNL-PREY--SKIIEILEN 192 (214)
T ss_pred CCCCCHHHHHHHHHH-------HHHHCCCCC--CHHHHHHHHHHH-CCCH--HHHHHHHHH
T ss_conf 269898999999999-------999869988--755999999985-1789--999999999
No 318
>PRK08181 transposase; Validated
Probab=97.67 E-value=0.00017 Score=55.49 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=59.4
Q ss_pred HHHHHHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 78999999963-36777866895288740777999999987348998444574378873135421745420245458999
Q gi|254780877|r 184 DDEMRRAIQVL-SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSL 262 (853)
Q Consensus 184 e~EI~~~~~iL-~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i 262 (853)
...+..+...+ =-+++.|+|++|+||||||-++.+|+..-+. +|++++-..+..|+.--. ...-+..+...
T Consensus 90 ~~~i~~L~~~~~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~-------~G~~V~f~~~~~L~~~L~-~a~~~~~~~~~ 161 (269)
T PRK08181 90 KAQVMALAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTRTTDLVQKLQ-VARRELQLESA 161 (269)
T ss_pred HHHHHHHHCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHH-HHHHCCCHHHH
T ss_conf 9999999656758864870899899998788999999999998-------799399978999999999-97755839999
Q ss_pred HHHHHHCCCCEEEEECCHHHH
Q ss_conf 999860799769996362773
Q gi|254780877|r 263 LCEIRSEDGEIILFIDELHVL 283 (853)
Q Consensus 263 ~~~~~~~~~~~ilfide~h~~ 283 (853)
++.+.+.+ +|.|||+-.+
T Consensus 162 ~~~l~~~d---LLIiDe~G~~ 179 (269)
T PRK08181 162 IAKLDKFD---LLILDDLAYV 179 (269)
T ss_pred HHHHHCCC---EEEEHHCCCC
T ss_conf 99974446---0122010566
No 319
>KOG0728 consensus
Probab=97.66 E-value=0.0026 Score=45.87 Aligned_cols=149 Identities=23% Similarity=0.344 Sum_probs=102.5
Q ss_pred HHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99633677786689528874077799999998734899844457437887313542174542024545899999986079
Q gi|254780877|r 191 IQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED 270 (853)
Q Consensus 191 ~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~ 270 (853)
++.|.--.-..++|-|+||.|||-++...|.- -++.++.+.-+.|+ .+|-||-..-++.++--..++
T Consensus 173 F~aLGIaQPKGvlLygppgtGktLlaraVahh----------t~c~firvsgselv--qk~igegsrmvrelfvmareh- 239 (404)
T KOG0728 173 FEALGIAQPKGVLLYGPPGTGKTLLARAVAHH----------TDCTFIRVSGSELV--QKYIGEGSRMVRELFVMAREH- 239 (404)
T ss_pred HHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH----------CCEEEEEECHHHHH--HHHHHHHHHHHHHHHHHHHHC-
T ss_conf 98518788760488469997562999998754----------14079996449999--998501389999999998750-
Q ss_pred CCEEEEECCHHHHCCCCCCCC--CCC---------HHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHC---CCEE
Q ss_conf 976999636277302666554--335---------88887653124660489974489999973001113202---3111
Q gi|254780877|r 271 GEIILFIDELHVLVGAGKTDG--AMD---------ASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARR---FQSL 336 (853)
Q Consensus 271 ~~~ilfide~h~~~gaG~~~g--~~D---------aan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RR---Fq~i 336 (853)
.+.|+|.|||..| |..+.+| +.| .-|-|...=|...|++|-||.--. =-|+||-|- =.+|
T Consensus 240 apsiifmdeidsi-gs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid-----ild~allrpgridrki 313 (404)
T KOG0728 240 APSIIFMDEIDSI-GSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID-----ILDPALLRPGRIDRKI 313 (404)
T ss_pred CCCEEEEHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC-----CCCHHHCCCCCCCCCC
T ss_conf 8826750000121-234345789863899999999997402400036626998416422-----2468663877545556
Q ss_pred ECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1157776789999999789865
Q gi|254780877|r 337 LVGEPTVTDTISILRGLKERYE 358 (853)
Q Consensus 337 ~V~Eps~~~t~~iL~gl~~~yE 358 (853)
.-..|+.+.-.+||+-...++.
T Consensus 314 efp~p~e~ar~~ilkihsrkmn 335 (404)
T KOG0728 314 EFPPPNEEARLDILKIHSRKMN 335 (404)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 4899877888789988555301
No 320
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.66 E-value=0.002 Score=46.80 Aligned_cols=90 Identities=26% Similarity=0.437 Sum_probs=53.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHH-H-H-CCC-CCCCCCCCHH---HHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH
Q ss_conf 66512898726786168899999998-7-2-377-6530022447---74034532013047711203566774211322
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLAR-L-L-FDD-ENSMIRIDMS---EYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR 667 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~-~-l-f~~-~~~lir~dMs---ey~e~~~vs~LiGappGYvG~~~gg~Lte~vr 667 (853)
...-+++.|+||||||||.+.-.||- + | +|. .-.||.+|-- ---.=.+.++++|-| =+|=++. ..|.++++
T Consensus 207 ~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp-~~v~~~~-~~l~~al~ 284 (412)
T PRK05703 207 LEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIP-VKVAYDP-KELAKALE 284 (412)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCE-EEEECCH-HHHHHHHH
T ss_conf 456736999888887567699999999999729981799983767777999999999971973-7984799-99999998
Q ss_pred CC-CCCEEEEHHHHHCCHHH
Q ss_conf 15-64102202144149899
Q gi|254780877|r 668 RH-PYQVVLFDEIEKAHSDV 686 (853)
Q Consensus 668 ~~-P~sVil~DEiEKah~~v 686 (853)
+. .+-+||.|--=..|.+.
T Consensus 285 ~~~~~dlILIDTaG~s~~d~ 304 (412)
T PRK05703 285 QLANCDLILIDTAGRSQRDP 304 (412)
T ss_pred HHCCCCEEEEECCCCCCCCH
T ss_conf 71589979996898897899
No 321
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=97.65 E-value=0.0054 Score=43.27 Aligned_cols=207 Identities=21% Similarity=0.350 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH-----HCC---C----------------------CC
Q ss_conf 33357899999996336777866895288740777999999987-----348---9----------------------98
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRI-----ING---D----------------------IP 229 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i-----~~~---~----------------------vp 229 (853)
|+|-|+=-.=++-..-.-+=+.+++-||=|+|||+.|-||+-.+ ++| . .|
T Consensus 6 iVGQe~LK~ALLL~Av~P~iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C~~~~~~~G~~~ 85 (688)
T TIGR02442 6 IVGQEDLKLALLLNAVNPRIGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEECRRKLEEQGTLP 85 (688)
T ss_pred CCCHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 21427986532100252663707887788862789888487616023664047888777887040067675552047753
Q ss_pred HHHCCCEEEEEEHHH---HHCCCCCCCHHHHHHH--------HHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHH
Q ss_conf 444574378873135---4217454202454589--------99999860799769996362773026665543358888
Q gi|254780877|r 230 ESLKGKRLMALDMGA---LIAGAKFRGEFEERLK--------SLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNL 298 (853)
Q Consensus 230 ~~l~~~~i~~ld~~~---l~ag~~~rg~~e~r~~--------~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~ 298 (853)
..=....++.|-+|+ .|-|+= +||.=|+ +||.++ +.| |||||||--| . =...|+
T Consensus 86 ~~~~~~~~V~LPlgATEDRVvG~L---Di~~al~~G~~~FqPGLLA~A--hrG--iLYiDEVNLL-d-------DhlVD~ 150 (688)
T TIGR02442 86 SEQRPVPFVNLPLGATEDRVVGSL---DIERALKEGEKAFQPGLLAEA--HRG--ILYIDEVNLL-D-------DHLVDV 150 (688)
T ss_pred CCCCCCEEEECCCCCCHHHHCCHH---HHHHHHHHCHHHHCCCCHHHH--CCC--EEEEEEECCC-C-------CHHHHH
T ss_conf 135873588658775233221305---489998718566078861754--687--1678520014-4-------147789
Q ss_pred HHHHHCCCCE---------------EEEEEECHHHHHHHHHCCHHHHHCCC-EEECCCCC-HHHHHHHHHHHHHHH----
Q ss_conf 7653124660---------------48997448999997300111320231-11115777-678999999978986----
Q gi|254780877|r 299 LKPSLARGEL---------------HCIGATTLDEYRKYIEKDPALARRFQ-SLLVGEPT-VTDTISILRGLKERY---- 357 (853)
Q Consensus 299 LKP~LarG~l---------------~~IgaTT~~Eyrk~iEkD~Al~RRFq-~i~V~Eps-~~~t~~iL~gl~~~y---- 357 (853)
|-=+.|.|.- -.||+.=|||= |=-|=|--||= .|.|.-+. .++=++|++--. .|
T Consensus 151 lLDaaA~G~n~VEREG~S~~Hparf~L~GTMNPEEG----~LRPQLLDRFGL~V~v~~~~d~~~R~Ev~~Rrl-~~d~dP 225 (688)
T TIGR02442 151 LLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAASRDPEERVEVIRRRL-AFDADP 225 (688)
T ss_pred HHHHHHCCCEEEEECCCCHHCHHHHHHHCCCCCCHH----HHCHHHHHHHHCEEEECCCCCHHHHHHHHHHHH-HHCCCC
T ss_conf 999876480067635743001145532203785221----102232424401155024358668999999997-540267
Q ss_pred HHH-CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 541-4961015899999863332024576747789999999998754102
Q gi|254780877|r 358 EQH-HKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQID 406 (853)
Q Consensus 358 E~~-H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~ 406 (853)
|.| +.-+=.+++|..-+..+...+++=.|||..+-.|=+-|...-+..+
T Consensus 226 ~~F~~~~~~~~~~L~~~I~~AR~lLp~V~l~d~~~~~I~~lc~~~~V~Gh 275 (688)
T TIGR02442 226 EAFAARWAAEQEELRERIAAARSLLPSVRLSDSLLRFISELCIEFGVDGH 275 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 78899999999999999999997547765888999999999997288852
No 322
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.63 E-value=0.00054 Score=51.40 Aligned_cols=70 Identities=26% Similarity=0.457 Sum_probs=50.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 777866895288740777999999987348998444574378873135421---74542024545899999986079976
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA---GAKFRGEFEERLKSLLCEIRSEDGEI 273 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~~e~r~~~i~~~~~~~~~~~ 273 (853)
+.+.|.++.|+||+|||-++-+++...++. +++++-+.+..|+. .+.-.|.++ ..++.+.+.+
T Consensus 45 ~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~~~~~~~~----~~l~~~~~~d--- 110 (178)
T pfam01695 45 EQAENLLLLGPPGVGKTHLACALGHQACRA-------GYSVLFTRTPDLVEQLKRARGDGRLA----RTLQRLAKAD--- 110 (178)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEECHHHHHHHHHHHHCCCHH----HHHHHHHCCC---
T ss_conf 158768998999987899999999999986-------98599996167999999875267499----9999962589---
Q ss_pred EEEECCH
Q ss_conf 9996362
Q gi|254780877|r 274 ILFIDEL 280 (853)
Q Consensus 274 ilfide~ 280 (853)
+|.|||+
T Consensus 111 lLIiDDl 117 (178)
T pfam01695 111 LLILDDI 117 (178)
T ss_pred EEEEEHH
T ss_conf 7887200
No 323
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.63 E-value=7e-05 Score=58.64 Aligned_cols=95 Identities=25% Similarity=0.390 Sum_probs=63.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHCCCCCCC-HHHCCCCHHCCCCCCCCCCHHHHCCCCCEEE
Q ss_conf 12898726786168899999998723776530022-447740345320-1304771120356677421132215641022
Q gi|254780877|r 598 MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYMEKHSVS-RLIGSPPGYVGYEEGGALTEAVRRHPYQVVL 675 (853)
Q Consensus 598 ~~~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~e~~~vs-~LiGappGYvG~~~gg~Lte~vr~~P~sVil 675 (853)
-|.+|++||||.|||.+.++|..++-..+.+++.+ |--||.-+|--. .+.- ..+-+.++ -.+-.++|.+| .+|+
T Consensus 139 ~~~ilIsG~TGSGKTT~l~all~~i~~~~~riitiED~~El~l~~~~~v~l~~-~~~~~t~~--~ll~~~LR~~P-D~Ii 214 (283)
T pfam00437 139 RGNILVSGGTGSGKTTLLYALLNEINTDDERIVTIEDPVEIQLEGPNQVQLNT-RLAGVTFA--DLLRAALRQRP-DRIM 214 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEECCCCCCEEEEEE-CCCCCCHH--HHHHHHHCCCC-CEEE
T ss_conf 97599988999988999999998408777627873378523179887899985-58876999--99999638899-9897
Q ss_pred EHHHHHCCHHHHHHHHHHHHCCEE
Q ss_conf 021441498999999998404578
Q gi|254780877|r 676 FDEIEKAHSDVHNILLQVLDDGRL 699 (853)
Q Consensus 676 ~DEiEKah~~v~~~llqild~G~l 699 (853)
+.||-- .+.+++ ++.+..|++
T Consensus 215 vGEiR~--~Ea~~~-l~a~~TGH~ 235 (283)
T pfam00437 215 VGEIRD--GETADI-LRAANTGHP 235 (283)
T ss_pred ECCCCC--HHHHHH-HHHHHCCCC
T ss_conf 578699--899999-999975998
No 324
>KOG0729 consensus
Probab=97.62 E-value=0.001 Score=49.25 Aligned_cols=154 Identities=27% Similarity=0.383 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHC-------------CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHH
Q ss_conf 3335789999999633-------------677786689528874077799999998734899844457437887313542
Q gi|254780877|r 180 VIGRDDEMRRAIQVLS-------------RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALI 246 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~-------------r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 246 (853)
|=|..++|+++-++.. ----..++|-|+||.|||-.+...|.|- +.-.+.+=-+.||
T Consensus 179 vGGCKeqIEklREVVE~PlL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVANRT----------dAcFIRViGSELV 248 (435)
T KOG0729 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIGSELV 248 (435)
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCC----------CCEEEEEHHHHHH
T ss_conf 536699999999988432558888875278998733786899986108999874566----------7458763118999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC-CC---------HHHHHHHHHCCCCEEEEEEECH
Q ss_conf 1745420245458999999860799769996362773026665543-35---------8888765312466048997448
Q gi|254780877|r 247 AGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA-MD---------ASNLLKPSLARGELHCIGATTL 316 (853)
Q Consensus 247 ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~-~D---------aan~LKP~LarG~l~~IgaTT~ 316 (853)
.+|.||-..-++.+. ++...+.-.|+|+|||..+=||-=-+|. .| .-|-|...=.||.|++.-||.-
T Consensus 249 --QKYvGEGARMVRElF-eMAr~KKACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~QLDGFDpRGNIKVlmATNR 325 (435)
T KOG0729 249 --QKYVGEGARMVRELF-EMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR 325 (435)
T ss_pred --HHHHHHHHHHHHHHH-HHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf --998624689999999-98523652799841010226720357888727999999999986037788887589863489
Q ss_pred HHHHHHHHCCHHHHHC---CCEEECCCCCHHHHHHHHH
Q ss_conf 9999973001113202---3111115777678999999
Q gi|254780877|r 317 DEYRKYIEKDPALARR---FQSLLVGEPTVTDTISILR 351 (853)
Q Consensus 317 ~Eyrk~iEkD~Al~RR---Fq~i~V~Eps~~~t~~iL~ 351 (853)
- =.-|+||.|- =.+|.-.=|+.+--..|++
T Consensus 326 P-----dtLDpALlRPGRlDRKVEF~LPDlegR~~I~k 358 (435)
T KOG0729 326 P-----DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFK 358 (435)
T ss_pred C-----CCCCHHHCCCCCCCCCEECCCCCCCCCCEEEE
T ss_conf 8-----87687662876423112105876235512577
No 325
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.62 E-value=0.011 Score=40.82 Aligned_cols=190 Identities=21% Similarity=0.321 Sum_probs=99.3
Q ss_pred CCC-CCCHHHHHHHHHHHH---CC---------CCCCCEEEECCCCCCHHHHHHHHHHHH-----HCCCCC--HHH----
Q ss_conf 533-333578999999963---36---------777866895288740777999999987-----348998--444----
Q gi|254780877|r 177 LDP-VIGRDDEMRRAIQVL---SR---------RTKNNPVLIGDPGVGKTAIIEGLASRI-----INGDIP--ESL---- 232 (853)
Q Consensus 177 LDP-VIGRe~EI~~~~~iL---~r---------~~k~n~~lvGe~GvGKtaive~la~~i-----~~~~vp--~~l---- 232 (853)
+-| +.|.+..=.-++-.| ++ |..-|++|||+||+||+.+....++.. +.|.-. ..|
T Consensus 201 iaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~ihiLLvGDPGtgKSqlLk~~~~iaprsvytsG~gsS~aGLTaav 280 (509)
T smart00350 201 LAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEE
T ss_conf 49732387889999999970887664898850415414998469982362999999985886068734445557706899
Q ss_pred -CC--CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC----
Q ss_conf -57--43788731354217454202454589999998607997699963627730266655433588887653124----
Q gi|254780877|r 233 -KG--KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR---- 305 (853)
Q Consensus 233 -~~--~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar---- 305 (853)
++ ..-|.|+.|+|| -+++. |.+|||+.-+=. -|-+. |--+|..
T Consensus 281 ~rd~~~ge~~leaGALV---------------------lAD~G-iccIDEfdKm~~-------~dr~a-lhEaMEQQtis 330 (509)
T smart00350 281 TRDPETREFTLEGGALV---------------------LADNG-VCCIDEFDKMDD-------SDRTA-IHEAMEQQTIS 330 (509)
T ss_pred EECCCCCCEEECCCCEE---------------------CCCCC-EEEEEEHHHCCH-------HHHHH-HHHHHHHCEEE
T ss_conf 98178883787256412---------------------05675-478521320787-------78999-99999748778
Q ss_pred ---C--------CEEEEEEECHHH--------HHHHHHCCHHHHHCCCEEE--CCCCCHHHHHHHHHHHHHHH-------
Q ss_conf ---6--------604899744899--------9997300111320231111--15777678999999978986-------
Q gi|254780877|r 306 ---G--------ELHCIGATTLDE--------YRKYIEKDPALARRFQSLL--VGEPTVTDTISILRGLKERY------- 357 (853)
Q Consensus 306 ---G--------~l~~IgaTT~~E--------yrk~iEkD~Al~RRFq~i~--V~Eps~~~t~~iL~gl~~~y------- 357 (853)
+ .-.+++|+-|.. ....|.=.++|-.||.-|. .++|+.+.-..|-+.+...+
T Consensus 331 iaKaGi~~tL~aR~sVlAAaNP~~g~yd~~~s~~eni~l~~~LLSRFDLIf~l~D~~~~~~D~~ia~hil~~h~~~~~~~ 410 (509)
T smart00350 331 IAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEP 410 (509)
T ss_pred EECCCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 74375179985573599865565563788899999468980354102389996158987889999999999874158875
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 5414961015899999863332024576747789999999
Q gi|254780877|r 358 EQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEA 397 (853)
Q Consensus 358 E~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA 397 (853)
+......++.+-|..-+.++..+++= .|++.|.++|-+.
T Consensus 411 ~~~~~~~~~~~~lrkYI~yar~~~~P-~ls~eA~~~i~~~ 449 (509)
T smart00350 411 DEADEVPISQEFLRKYIAYAREKIKP-KLSEEAAEKLVKA 449 (509)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHH
T ss_conf 45568868999999999999862899-7899999999999
No 326
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=97.61 E-value=0.0024 Score=46.18 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH---------HHCCCC
Q ss_conf 59489999999999874101236566512898726786168899999998723776530022447---------740345
Q gi|254780877|r 571 IGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMS---------EYMEKH 641 (853)
Q Consensus 571 ~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMs---------ey~e~~ 641 (853)
+|-++-++.+.+.+.. .++.| .+..||-++|||.|.+..++.+-+.....+-+|.. ++...-
T Consensus 2 ~~Re~EL~~L~~~~~~------~~~~~---ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 72 (223)
T pfam01637 2 FDREKELKELEEWAER------GTYPI---IVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAK 72 (223)
T ss_pred CCHHHHHHHHHHHHHC------CCCCE---EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 8979999999999966------99718---99986887879999999998633468528999514443799999888889
Q ss_pred CC----CHHHCCCCHHCCCCCCCCCC---HHHH-CCCCCEEEEHHHHHC-----CHHHHHHHHHHHHCCEEECCCCCEEE
Q ss_conf 32----01304771120356677421---1322-156410220214414-----98999999998404578879997783
Q gi|254780877|r 642 SV----SRLIGSPPGYVGYEEGGALT---EAVR-RHPYQVVLFDEIEKA-----HSDVHNILLQVLDDGRLTDSQGRTVD 708 (853)
Q Consensus 642 ~v----s~LiGappGYvG~~~gg~Lt---e~vr-~~P~sVil~DEiEKa-----h~~v~~~llqild~G~ltd~~G~~v~ 708 (853)
.+ ...++...+.........+. +.+. +.+..||.|||+-.. .|++...|..++| ++...
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d--~~~~~------ 144 (223)
T pfam01637 73 RLAEALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLID--YPPKE------ 144 (223)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHH--HHHCC------
T ss_conf 9999987651233222112078899999999985599659997016776402443059999999999--75245------
Q ss_pred CCC-CEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 033-1559548512687640326799999999986288577266681586288998999999999999999999857989
Q gi|254780877|r 709 FRN-TLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS 787 (853)
Q Consensus 709 f~n-~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~ 787 (853)
+| ++|++.|..|- +..+-.. ...|.+|.+. +...|++..+....+...+.+ .++
T Consensus 145 -~~~~~I~~GS~~~~--------------m~~~~~~-~~plygR~~~-i~l~p~~~~~~~efl~~~f~e-------~~~- 199 (223)
T pfam01637 145 -YHLIVVLCGSSEGL--------------TIELLDY-KSPLYGRHRW-ALLKPFDFETAWNFLREGFEE-------LYE- 199 (223)
T ss_pred -CCEEEEEECCHHHH--------------HHHHHCC-CCCCCCCCCE-EEECCCCHHHHHHHHHHHHHH-------HCC-
T ss_conf -77589997271999--------------9998620-5653575022-772689989999999999998-------478-
Q ss_pred EEECHHHHHHHHH
Q ss_conf 9998899999997
Q gi|254780877|r 788 MDFDDQVIDWLSC 800 (853)
Q Consensus 788 l~~~~~~~~~l~~ 800 (853)
.++++.+..+..
T Consensus 200 -~~~~~~~~~iy~ 211 (223)
T pfam01637 200 -PGPKEEFEEVWR 211 (223)
T ss_pred -CCCHHHHHHHHH
T ss_conf -999899999999
No 327
>KOG1808 consensus
Probab=97.58 E-value=0.00015 Score=55.96 Aligned_cols=27 Identities=33% Similarity=0.366 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 689528874077799999998734899
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIINGDI 228 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~~~v 228 (853)
.+|.|+.|.|||+|+.+||.+.-.+-|
T Consensus 443 illqG~tssGKtsii~~la~~~g~~~v 469 (1856)
T KOG1808 443 ILLQGPTSSGKTSIIKELARATGKNIV 469 (1856)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 677547676811599999998546734
No 328
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=97.58 E-value=0.0065 Score=42.65 Aligned_cols=124 Identities=14% Similarity=0.271 Sum_probs=71.5
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCH-----
Q ss_conf 102202144149899999999840457887999778303315595485126876403267999999999862885-----
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKP----- 746 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~p----- 746 (853)
=||+.|+++.+.|+-.--+|.... ...||.||++|+-.+ .+.+..++++.|.+
T Consensus 162 iVviIDDLDRc~p~~~v~~Le~Ik---------~~~d~~n~vfVLa~D-------------~~~v~~al~~~~~~~~~~~ 219 (301)
T pfam07693 162 IVVIIDDLDRCEPEEAVELLEAVR---------LLFDFPNVVFILAYD-------------EEIIKKAIEHNYGGGEIDG 219 (301)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH---------HHHCCCCEEEEEECC-------------HHHHHHHHHHHCCCCCCCH
T ss_conf 899973655488789999999999---------972679818999758-------------9999999998738787418
Q ss_pred -HHHCCCCC-EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCC-CCCCHHHHHHHHH
Q ss_conf -77266681-586288998999999999999999999857989999889999999708982-2062157999998
Q gi|254780877|r 747 -EFLNRLDE-IILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDP-SYGARPLKRVIQR 818 (853)
Q Consensus 747 -eflnRid~-iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~-~~GaR~l~r~i~~ 818 (853)
+||.+|=. -+...+++..+++..+...+..+........-.-.....-...+.. +.+. ..--|.++|++..
T Consensus 220 ~~YLeKiIq~p~~lP~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nPR~ikR~lN~ 293 (301)
T pfam07693 220 QDYLEKIIQLPFKLPPLGLRELRRFLMTLFDALEKGTPSEDRDRGLRADDLNIILD-SEDKSNINPRELKRLINA 293 (301)
T ss_pred HHHHHHHEECEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHE
T ss_conf 99998541024767998789999999999999852444443202346789999997-411147999999998733
No 329
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=97.54 E-value=0.00012 Score=56.81 Aligned_cols=118 Identities=25% Similarity=0.452 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH--------HCCC
Q ss_conf 33357899999996336--7778668952887407779999999873489984445743788731354--------2174
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL--------IAGA 249 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l--------~ag~ 249 (853)
+||....++++.+.+.| ....++++.||+|+||+.+++.+-+.=... +...+.+|.+++ +=|.
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~~~pVLI~GE~GtGK~~lAr~IH~~S~r~-------~~pfi~vnc~~~~~~~le~~LFG~ 73 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLSPRA-------DGPFVAVNCAAIPEELLESELFGH 73 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 9738999999999999995889988998999888899999999852435-------688312567899877999987587
Q ss_pred CCCCHHH---HHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEEEEE
Q ss_conf 5420245---45899999986079976999636277302666554335888876531246-------------6048997
Q gi|254780877|r 250 KFRGEFE---ERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG-------------ELHCIGA 313 (853)
Q Consensus 250 ~~rg~~e---~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG-------------~l~~Iga 313 (853)
. +|.|. ..-..+++ .+++. .||+|||+.+ +.++-.-|--.|..| ++|+|.+
T Consensus 74 ~-~g~f~ga~~~~~G~le---~A~gG-TL~LdeI~~L--------~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIas 140 (168)
T pfam00158 74 E-KGAFTGAVSDRKGLFE---LADGG-TLFLDEIGEL--------PLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAA 140 (168)
T ss_pred C-CCCCCCCCCCCCCCEE---ECCCC-EEECCCHHHC--------CHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEE
T ss_conf 6-6766898757899642---26998-7880244139--------99999999999857969977998458885499996
Q ss_pred ECHH
Q ss_conf 4489
Q gi|254780877|r 314 TTLD 317 (853)
Q Consensus 314 TT~~ 317 (853)
|+.+
T Consensus 141 t~~~ 144 (168)
T pfam00158 141 TNRD 144 (168)
T ss_pred CCCC
T ss_conf 5988
No 330
>PRK12377 putative replication protein; Provisional
Probab=97.54 E-value=0.00038 Score=52.68 Aligned_cols=102 Identities=22% Similarity=0.405 Sum_probs=65.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCC---CCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 778668952887407779999999873489984445743788731354217---45420245458999999860799769
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAG---AKFRGEFEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag---~~~rg~~e~r~~~i~~~~~~~~~~~i 274 (853)
...|.|++|+||||||-++-+++...+. +|++++-..+..|+.- +.-.|..++ .+++.+...+ .
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~-------~G~sVlF~t~~dLv~~L~~a~~~g~~~~---k~l~~l~~~d---L 166 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA-------KGRSVIVVTVPDVMSRLHESYDNGQSGE---KFLQELCKVD---L 166 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHHHCCCCHH---HHHHHHHCCC---E
T ss_conf 8860899899998788999999999998-------7996999889999999999998485099---9999973389---8
Q ss_pred EEECCHHHHCCCCCCCCCCCHHHHHHHHHC-C-CCEEEEEEECHHH
Q ss_conf 996362773026665543358888765312-4-6604899744899
Q gi|254780877|r 275 LFIDELHVLVGAGKTDGAMDASNLLKPSLA-R-GELHCIGATTLDE 318 (853)
Q Consensus 275 lfide~h~~~gaG~~~g~~Daan~LKP~La-r-G~l~~IgaTT~~E 318 (853)
|.|||+-.. ..+-..+++|=-.++ | .+.+-+..||.-+
T Consensus 167 LIIDElG~~------~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~ 206 (248)
T PRK12377 167 LVLDEIGIQ------RETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred EEEHHCCCC------CCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 986000578------8986799999999999985579868975899
No 331
>PRK06526 transposase; Provisional
Probab=97.54 E-value=0.00027 Score=53.83 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=57.4
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999996336777866895288740777999999987348998444574378873135421745420245458999999
Q gi|254780877|r 186 EMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCE 265 (853)
Q Consensus 186 EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~ 265 (853)
-|+++...==-+.+.|++++|+||+|||-++.+|+...+. +|+++.-..+..|+.--. ...-+.++...+..
T Consensus 85 ~i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~-~a~~~g~~~~~~~~ 156 (254)
T PRK06526 85 TIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAAQWVARLA-AAHHAGRLQDELVK 156 (254)
T ss_pred HHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEEHHHHHHHHH-HHHHCCCHHHHHHH
T ss_conf 9999863717765887899899998689999999999998-------699679987799999999-98855809999998
Q ss_pred HHHCCCCEEEEECCHHHH
Q ss_conf 860799769996362773
Q gi|254780877|r 266 IRSEDGEIILFIDELHVL 283 (853)
Q Consensus 266 ~~~~~~~~ilfide~h~~ 283 (853)
+...+ +|.|||+-..
T Consensus 157 l~~~d---LLIiDe~g~~ 171 (254)
T PRK06526 157 LGRIP---LLIVDEVGYI 171 (254)
T ss_pred HHCCC---EEEEECCCCC
T ss_conf 51368---7765021364
No 332
>KOG0991 consensus
Probab=97.52 E-value=0.0017 Score=47.37 Aligned_cols=121 Identities=21% Similarity=0.418 Sum_probs=80.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCCCCHHHHC------
Q ss_conf 76745948999999999987410123656651289872678616889999999872377--6530022447740------
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD--ENSMIRIDMSEYM------ 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~--~~~lir~dMsey~------ 638 (853)
-+.|+|.++.|+.+..-. .+.|-| .++|.||+|+|||..++.||..|.|+ ..+++-+|-|+=.
T Consensus 26 l~dIVGNe~tv~rl~via-------~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991 26 LQDIVGNEDTVERLSVIA-------KEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred HHHHHCCHHHHHHHHHHH-------HCCCCC--CEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 988217798999999999-------728998--66752799986164899999998380666576320576554608999
Q ss_pred --CCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEE
Q ss_conf --345320130477112035667742113221564102202144149899999999840457887999778303315595
Q gi|254780877|r 639 --EKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIM 716 (853)
Q Consensus 639 --e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~ 716 (853)
=++.+.+=+--|||- |-+|.+||-+-....-++.|-..++ +.-+.|=|.+
T Consensus 97 n~IK~FAQ~kv~lp~gr-----------------hKIiILDEADSMT~gAQQAlRRtME-----------iyS~ttRFal 148 (333)
T KOG0991 97 NKIKMFAQKKVTLPPGR-----------------HKIIILDEADSMTAGAQQALRRTME-----------IYSNTTRFAL 148 (333)
T ss_pred HHHHHHHHHHCCCCCCC-----------------EEEEEEECCCHHHHHHHHHHHHHHH-----------HHCCCCHHHH
T ss_conf 99999987203489985-----------------2489961522020689999999999-----------9706320000
Q ss_pred CCCHHHHH
Q ss_conf 48512687
Q gi|254780877|r 717 TSNLGAEY 724 (853)
Q Consensus 717 TsN~G~~~ 724 (853)
-.|.-.+.
T Consensus 149 aCN~s~KI 156 (333)
T KOG0991 149 ACNQSEKI 156 (333)
T ss_pred HHCCHHHH
T ss_conf 01542132
No 333
>KOG0745 consensus
Probab=97.52 E-value=0.0002 Score=54.85 Aligned_cols=118 Identities=28% Similarity=0.398 Sum_probs=73.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHHH----HCCC
Q ss_conf 7778668952887407779999999873489984445743788731354217454202-4545899999986----0799
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE-FEERLKSLLCEIR----SEDG 271 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-~e~r~~~i~~~~~----~~~~ 271 (853)
-.|+|++|+|+.|+|||-+..-||.-. +||-.+.++.- +.-+.|.|| .|.-+..++.++. ++ +
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTt--------LTQAGYVGeDVEsvi~KLl~~A~~nVekA-Q 291 (564)
T KOG0745 224 LEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTT--------LTQAGYVGEDVESVIQKLLQEAEYNVEKA-Q 291 (564)
T ss_pred EECCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCC--------HHHCCCCCCCHHHHHHHHHHHCCCCHHHH-H
T ss_conf 403547997788876438999999970---88768732552--------20055345429999999999725789988-2
Q ss_pred CEEEEECCHHHHCCCC-CCCCCCCHH------HHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECC
Q ss_conf 7699963627730266-655433588------8876531246604899744899999730011132023111115
Q gi|254780877|r 272 EIILFIDELHVLVGAG-KTDGAMDAS------NLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVG 339 (853)
Q Consensus 272 ~~ilfide~h~~~gaG-~~~g~~Daa------n~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~ 339 (853)
.=|.|+||+.-|--+- +...+-|++ .||| |-.|.+--| =||++-=.-|=+.|.|+
T Consensus 292 qGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLK--llEGtvVnV-----------peK~~~~~~rgd~vqiD 353 (564)
T KOG0745 292 QGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLK--LLEGTVVNV-----------PEKGSRRKPRGDTVQID 353 (564)
T ss_pred CCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHH--HHCCCEECC-----------CCCCCCCCCCCCEEEEE
T ss_conf 673887601244136765454445662669999999--852627702-----------67787778999858971
No 334
>PRK09183 transposase/IS protein; Provisional
Probab=97.51 E-value=0.00031 Score=53.42 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=54.2
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC---CCCCCCHHHHHHHHHH
Q ss_conf 9999996336777866895288740777999999987348998444574378873135421---7454202454589999
Q gi|254780877|r 187 MRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA---GAKFRGEFEERLKSLL 263 (853)
Q Consensus 187 I~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~~e~r~~~i~ 263 (853)
|.++...===..+.|+||+|+||||||-++-+|+...+. +|++++-..+..|+. .+...|.+...++..
T Consensus 89 i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~~a~~~~~~~~~l~r~- 160 (258)
T PRK09183 89 LQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG- 160 (258)
T ss_pred HHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHH-
T ss_conf 998825816655886799899998689999999999998-------799399978999999999998768599999987-
Q ss_pred HHHHHCCCCEEEEECCHHHH
Q ss_conf 99860799769996362773
Q gi|254780877|r 264 CEIRSEDGEIILFIDELHVL 283 (853)
Q Consensus 264 ~~~~~~~~~~ilfide~h~~ 283 (853)
+.. .-+|.|||+-..
T Consensus 161 --l~~---~dLLIiDdlG~~ 175 (258)
T PRK09183 161 --VMA---PRLLIIDEIGYL 175 (258)
T ss_pred --HCC---CCEEEEHHHHCC
T ss_conf --434---651443133154
No 335
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.50 E-value=0.0019 Score=46.90 Aligned_cols=206 Identities=25% Similarity=0.369 Sum_probs=115.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHH----------HHCCCCCHHHCCCEEEEEEH
Q ss_conf 9853333357899999996336--77786689528874077799999998----------73489984445743788731
Q gi|254780877|r 175 GKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASR----------IINGDIPESLKGKRLMALDM 242 (853)
Q Consensus 175 GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~----------i~~~~vp~~l~~~~i~~ld~ 242 (853)
-.+|-+||...++.++++..-| ++-+++++.||.|+||--++++.-+. |.-+..|+.|-...+|.-.-
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~ 321 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEK 321 (560)
T ss_pred CCHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 66100205899999999999863389982899537886689999998744843479807876433888888888727677
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC-------------CCCEE
Q ss_conf 35421745420245458999999860799769996362773026665543358888765312-------------46604
Q gi|254780877|r 243 GALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA-------------RGELH 309 (853)
Q Consensus 243 ~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La-------------rG~l~ 309 (853)
|++ .||+--|. +++++. ++|. -||.|||--+= -.| =|-+|. .|. +-++|
T Consensus 322 GAF-TGA~~~GK-----~GlfE~---A~gG-TLFLDEIgemp------l~L-QaKLLR-VLQEkei~rvG~t~~~~vDVR 383 (560)
T COG3829 322 GAF-TGASKGGK-----PGLFEL---ANGG-TLFLDEIGEMP------LPL-QAKLLR-VLQEKEIERVGGTKPIPVDVR 383 (560)
T ss_pred CCC-CCCCCCCC-----CCCEEE---CCCC-EEEEHHHCCCC------HHH-HHHHHH-HHHHCEEEECCCCCCEEEEEE
T ss_conf 642-46445799-----760544---1698-37712320399------899-999999-875353785378875356789
Q ss_pred EEEEECHHHHHHHHHCCH---HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-
Q ss_conf 899744899999730011---1320231111157776789999999789865414961015899999863332024576-
Q gi|254780877|r 310 CIGATTLDEYRKYIEKDP---ALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRF- 385 (853)
Q Consensus 310 ~IgaTT~~Eyrk~iEkD~---Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~- 385 (853)
+|+||- ..-.+.|++-. -|==|..++.|.=|-.-+-.+=+-.+..++ ..++|.+|=.+-.
T Consensus 384 IIAATN-~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~F---------------l~k~s~~~~~~v~~ 447 (560)
T COG3829 384 IIAATN-RNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYF---------------LDKFSRRYGRNVKG 447 (560)
T ss_pred EEECCC-CCHHHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHH---------------HHHHHHHCCCCCCC
T ss_conf 994257-58999986396165530030401114777233820189999999---------------99999872887666
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 74778999999999875410222145788799999744
Q gi|254780877|r 386 LPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLK 423 (853)
Q Consensus 386 lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~ 423 (853)
+++.|+++| .++.+|-.+.++++-++++-
T Consensus 448 ls~~a~~~L---------~~y~WPGNVRELeNviER~v 476 (560)
T COG3829 448 LSPDALALL---------LRYDWPGNVRELENVIERAV 476 (560)
T ss_pred CCHHHHHHH---------HHCCCCCHHHHHHHHHHHHH
T ss_conf 899999999---------86899960999999999998
No 336
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=97.50 E-value=0.00052 Score=51.54 Aligned_cols=230 Identities=21% Similarity=0.356 Sum_probs=138.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 8899975999899999999873778878777546761078864435699872---9853333357899999996336777
Q gi|254780877|r 123 GESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKKYCRDLTEEARN---GKLDPVIGRDDEMRRAIQVLSRRTK 199 (853)
Q Consensus 123 a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~L~ky~~DLTe~Ar~---GkLDPVIGRe~EI~~~~~iL~r~~k 199 (853)
||-|-+-.++.+.+.=.+++... ...|++==|-|+. +.. -.+.=+||+++++.++.+..-|=--
T Consensus 97 AYDFyqKP~d~d~L~liv~RAf~------------L~~Le~ENRrL~~-~~~~Gst~~~Gli~~~~~m~kic~tIekvA~ 163 (451)
T TIGR02915 97 AYDFYQKPIDPDVLKLIVDRAFR------------LYTLETENRRLQS-ALGGGSTALEGLITSSPGMQKICRTIEKVAP 163 (451)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH------------HHHHHHHHHHHHH-CCCCCCCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 51013578757899999999888------------8888887699874-0688741036522068506789888652120
Q ss_pred CC--EEEECCCCCCHHHHHHHHHHHH----------HCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 86--6895288740777999999987----------34899844457437887313542174542024545899999986
Q gi|254780877|r 200 NN--PVLIGDPGVGKTAIIEGLASRI----------INGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIR 267 (853)
Q Consensus 200 ~n--~~lvGe~GvGKtaive~la~~i----------~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~ 267 (853)
+| ++|.||+|.||=-++.++-+.= .=+-+|+.|-...+|.-.=|++ -.=+|..+-.++
T Consensus 164 sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEKGAF----------TGA~k~T~GKIE 233 (451)
T TIGR02915 164 SDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEKGAF----------TGAVKQTLGKIE 233 (451)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHH----------HHHHCCCCCCEE
T ss_conf 0001301046671178999898420578977734441674575246677603410124----------220034776167
Q ss_pred HCCCCEEEEECCHH-----------------HH--CCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHH
Q ss_conf 07997699963627-----------------73--026665543358888765312466048997448999997300111
Q gi|254780877|r 268 SEDGEIILFIDELH-----------------VL--VGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPA 328 (853)
Q Consensus 268 ~~~~~~ilfide~h-----------------~~--~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~A 328 (853)
-+.+. =||.|||= .| +| |+.+-.+ +.|+|+||-. .-+++|+...=
T Consensus 234 ~A~~G-TLFLDEIGDLP~~LQAKLLRFLQErVIER~G-GR~eIPV-------------DVRvvCATnq-dL~~~i~eg~F 297 (451)
T TIGR02915 234 YAHGG-TLFLDEIGDLPLNLQAKLLRFLQERVIERLG-GREEIPV-------------DVRVVCATNQ-DLKKMIAEGTF 297 (451)
T ss_pred EECCC-CCCCCCHHCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCC-------------CEEEEECCCH-HHHHHHHCCCC
T ss_conf 50688-3011112206766899999875466631058-8724561-------------4267503224-68999854897
Q ss_pred ---HHHCCCEEECCCCC----HHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf ---32023111115777----67899999997898654149---610158999998633320245767477899999999
Q gi|254780877|r 329 ---LARRFQSLLVGEPT----VTDTISILRGLKERYEQHHK---VRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 329 ---l~RRFq~i~V~Eps----~~~t~~iL~gl~~~yE~~H~---V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
|==|.-.|.|.=|- .++++-+=+....+|-.-|+ -.+|++|+.+
T Consensus 298 REDLfYRl~Eisi~iPPLR~R~gDa~lLA~~Fl~rf~~~~k~~~~~F~~DA~~a-------------------------- 351 (451)
T TIGR02915 298 REDLFYRLAEISITIPPLRDRDGDAVLLANAFLERFARELKRKAKGFTDDALRA-------------------------- 351 (451)
T ss_pred CCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--------------------------
T ss_conf 200013466678625889986018999999999988787330216606999999--------------------------
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 98754102221457887999997
Q gi|254780877|r 399 ARVRMQIDTKPEVLDELDRRIIC 421 (853)
Q Consensus 399 A~~~i~~~~~P~~l~~l~r~i~~ 421 (853)
++.+++|=.+.++++++.+
T Consensus 352 ----le~h~WPGNvRELEN~vKR 370 (451)
T TIGR02915 352 ----LEAHKWPGNVRELENKVKR 370 (451)
T ss_pred ----HHCCCCCCCHHHHHCHHHE
T ss_conf ----7606998841544030021
No 337
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0089 Score=41.54 Aligned_cols=105 Identities=23% Similarity=0.378 Sum_probs=68.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH-CCCCCCCHH--HCCCCHHC--CCCCCC--CCCHHHHC---
Q ss_conf 289872678616889999999872377653002244774-034532013--04771120--356677--42113221---
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY-MEKHSVSRL--IGSPPGYV--GYEEGG--ALTEAVRR--- 668 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey-~e~~~vs~L--iGappGYv--G~~~gg--~Lte~vr~--- 668 (853)
-.+||.||.|+||+.+|..+|+.|.-.... ++- ..-|+. +| -|+-|-|. .-+++| .-.+.||.
T Consensus 26 HA~L~~g~~G~Gk~~la~~la~~LlC~~~~------~~~Cg~C~sC-~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~ 98 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSHALLCQNYQ------SEACGFCHSC-ELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNR 98 (319)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCCHHH-HHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 067667999857999999999998089999------9988778779-998758999823661233567687999999999
Q ss_pred --------CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf --------56410220214414989999999984045788799977830331559548512
Q gi|254780877|r 669 --------HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG 721 (853)
Q Consensus 669 --------~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G 721 (853)
..|-|+++|+.|+-+..-.|.||-.|+|=- .||+||++|+--
T Consensus 99 ~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp-----------~~t~fiL~t~~~ 148 (319)
T PRK06090 99 LAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPA-----------PNCLFLLVTHNQ 148 (319)
T ss_pred HHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CCEEEEEEECCH
T ss_conf 97545210693699981444349999999999842899-----------883899876851
No 338
>KOG0652 consensus
Probab=97.48 E-value=0.0036 Score=44.77 Aligned_cols=168 Identities=24% Similarity=0.338 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHHHH-------------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHH
Q ss_conf 333578999999963-------------3677786689528874077799999998734899844457437887313542
Q gi|254780877|r 180 VIGRDDEMRRAIQVL-------------SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALI 246 (853)
Q Consensus 180 VIGRe~EI~~~~~iL-------------~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 246 (853)
+=|-|+.|+.+++.. .-+--..+++-|+||.|||-++..-|-.-..- --.|.+-.++.
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--FLKLAgPQLVQ------- 243 (424)
T KOG0652 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--FLKLAGPQLVQ------- 243 (424)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCH--HHHHCCHHHHH-------
T ss_conf 325789999999886145656878874688899722765799975779999998740106--88732647776-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC--CCCC---------HHHHHHHHHCCCCEEEEEEEC
Q ss_conf 17454202454589999998607997699963627730266655--4335---------888876531246604899744
Q gi|254780877|r 247 AGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTD--GAMD---------ASNLLKPSLARGELHCIGATT 315 (853)
Q Consensus 247 ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~--g~~D---------aan~LKP~LarG~l~~IgaTT 315 (853)
.|-|+-..-++.-+.-.++ +.+.|+||||+..| |+.+.+ -+.| .-|-|...-+..++++|+||.
T Consensus 244 ---MfIGdGAkLVRDAFaLAKE-kaP~IIFIDElDAI-GtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652 244 ---MFIGDGAKLVRDAFALAKE-KAPTIIFIDELDAI-GTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred ---HHHCCHHHHHHHHHHHHHC-CCCEEEEEECHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf ---6533418899999987533-49838997300232-334365312343899999999998604899756267885216
Q ss_pred HHHHHHHHHCCHHHHH--C-CCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999997300111320--2-3111115777678999999978986541496101
Q gi|254780877|r 316 LDEYRKYIEKDPALAR--R-FQSLLVGEPTVTDTISILRGLKERYEQHHKVRIS 366 (853)
Q Consensus 316 ~~Eyrk~iEkD~Al~R--R-Fq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~ 366 (853)
--. =-||||-| | =.+|...-|+.+.--.||+-...++-.+..|.+.
T Consensus 319 RvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfe 367 (424)
T KOG0652 319 RVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFE 367 (424)
T ss_pred CCC-----CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 434-----3488886446644443488997789889998864005778887989
No 339
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=97.47 E-value=0.01 Score=41.01 Aligned_cols=161 Identities=25% Similarity=0.428 Sum_probs=117.1
Q ss_pred HHHHHHHHHHCCCCCCC---------EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHH
Q ss_conf 89999999633677786---------689528874077799999998734899844457437887313542174542024
Q gi|254780877|r 185 DEMRRAIQVLSRRTKNN---------PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEF 255 (853)
Q Consensus 185 ~EI~~~~~iL~r~~k~n---------~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~ 255 (853)
.||--.++|=.||.+.. =|.-|-||.|||+++--+|+..-+=+| |.-=++++..=+-||. =|=|.=
T Consensus 19 ~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnv---L~KGH~iE~ERADLVG--EYIGHT 93 (261)
T TIGR02881 19 KEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNV---LSKGHLIEVERADLVG--EYIGHT 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCC--CCCCCH
T ss_conf 99999999988887510114884478774278668438999999999853375---6788678876222122--320300
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC--CCCEEEEEEECHHHHHHHHHCCHHHHHCC
Q ss_conf 5458999999860799769996362773026665543358888765312--46604899744899999730011132023
Q gi|254780877|r 256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA--RGELHCIGATTLDEYRKYIEKDPALARRF 333 (853)
Q Consensus 256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La--rG~l~~IgaTT~~Eyrk~iEkD~Al~RRF 333 (853)
.+|.+.+++- +.-| ||||||..+|---|-=+=+=.|-..|--.+. +.++=+|=|==++|=--+.+-+|.|..||
T Consensus 94 AqkTRe~~kk--A~GG--vLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL~SRF 169 (261)
T TIGR02881 94 AQKTREVIKK--ALGG--VLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGLRSRF 169 (261)
T ss_pred HHHHHHHHHH--HCCC--CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCC
T ss_conf 4899999998--6388--00557777761488887662088899998761569868997087689999862077977766
Q ss_pred CEEECCCC--CHHHHHHHHHHHHH
Q ss_conf 11111577--76789999999789
Q gi|254780877|r 334 QSLLVGEP--TVTDTISILRGLKE 355 (853)
Q Consensus 334 q~i~V~Ep--s~~~t~~iL~gl~~ 355 (853)
||.++=| ++++-+.|......
T Consensus 170 -Pi~i~FPdY~~eeL~~Ia~~m~~ 192 (261)
T TIGR02881 170 -PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred -CCEEECCCCCHHHHHHHHHHHHH
T ss_conf -50541889988899999999986
No 340
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.47 E-value=0.0002 Score=54.85 Aligned_cols=95 Identities=28% Similarity=0.458 Sum_probs=59.1
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCC---CCHHCCCCCCCCCCHHHHCCCCCEEEEHH
Q ss_conf 872678616889999999872377653002244774034532013047---71120356677421132215641022021
Q gi|254780877|r 602 MFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGS---PPGYVGYEEGGALTEAVRRHPYQVVLFDE 678 (853)
Q Consensus 602 lf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGa---ppGYvG~~~gg~Lte~vr~~P~sVil~DE 678 (853)
.|.||+|+|||.+|+.||..+-.. + .+....++...-.. =.||.| + -|+++|+
T Consensus 2 ~l~G~~G~GKS~~a~~la~~~~~~---~------~~~~~~~~Y~~~~~~~~wdgY~g-------------q--~vvi~DD 57 (105)
T pfam00910 2 WLYGPPGCGKSTLAKYLARALLDH---L------GLPKKDSVYSRNPDDDFWDGYTG-------------Q--PVVIIDD 57 (105)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH---H------CCCCCCCEEECCCCCCCCCCCCC-------------C--EEEEEEC
T ss_conf 897999898899999999999998---3------77878977967887765678899-------------8--5799965
Q ss_pred HHHCCHH--HHHHHHHHHHCCEEE----CCCCCEEECCCCEEEECCCH
Q ss_conf 4414989--999999984045788----79997783033155954851
Q gi|254780877|r 679 IEKAHSD--VHNILLQVLDDGRLT----DSQGRTVDFRNTLIIMTSNL 720 (853)
Q Consensus 679 iEKah~~--v~~~llqild~G~lt----d~~G~~v~f~n~iii~TsN~ 720 (853)
+-....+ .+..|.|+.+.-.+. +-.++-.-|+.-+||+|||.
T Consensus 58 ~~~~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~ 105 (105)
T pfam00910 58 FGQNPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF 105 (105)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf 777888628899999875699838886676148884468889994799
No 341
>KOG0742 consensus
Probab=97.46 E-value=0.017 Score=39.25 Aligned_cols=191 Identities=22% Similarity=0.359 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHC---CCCH
Q ss_conf 9999999998741012365665128987267861688999999987237765300224477403453201304---7711
Q gi|254780877|r 576 AVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIG---SPPG 652 (853)
Q Consensus 576 ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiG---appG 652 (853)
+.+.-...|-++-++-+..+-|.-..||.||+|+|||..||.||.--. +| | +.+.| ||-|
T Consensus 362 sLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG--------lD---Y------A~mTGGDVAPlG 424 (630)
T KOG0742 362 SLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG--------LD---Y------AIMTGGDVAPLG 424 (630)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHCC--------CC---E------EHHCCCCCCCCH
T ss_conf 799999999887404300243044003247999860499999988528--------74---1------001378755521
Q ss_pred HCCCCCCCCCCHHHHCCCCCEEE-EHHHHH------------CCHHHHHHHHHHHHCCEEECCCCCEEECCCC-EEEECC
Q ss_conf 20356677421132215641022-021441------------4989999999984045788799977830331-559548
Q gi|254780877|r 653 YVGYEEGGALTEAVRRHPYQVVL-FDEIEK------------AHSDVHNILLQVLDDGRLTDSQGRTVDFRNT-LIIMTS 718 (853)
Q Consensus 653 YvG~~~gg~Lte~vr~~P~sVil-~DEiEK------------ah~~v~~~llqild~G~ltd~~G~~v~f~n~-iii~Ts 718 (853)
--|-..=..|-.+-++.-...+| .||-+- |...-+|.|| | |+-|-++- +.++-|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL--f----------RTGdqSrdivLvlAt 492 (630)
T KOG0742 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL--F----------RTGDQSRDIVLVLAT 492 (630)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHH--H----------HCCCCCCCEEEEEEC
T ss_conf 7889999998788751566449986116789987520102588999998898--7----------625655426899605
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH-------------H--H
Q ss_conf 512687640326799999999986288577266681586288998999999999999999999-------------8--5
Q gi|254780877|r 719 NLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLI-------------K--E 783 (853)
Q Consensus 719 N~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l-------------~--~ 783 (853)
|- +.. |--..-+|||++|-|.--..++..+++.++|++....- + .
T Consensus 493 Nr--------pgd------------lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~s 552 (630)
T KOG0742 493 NR--------PGD------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKES 552 (630)
T ss_pred CC--------CCC------------HHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 88--------321------------0167876555413068997789999999999998147777789721557776440
Q ss_pred CCCEEE--ECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 798999--9889999999708982206215799999
Q gi|254780877|r 784 RNISMD--FDDQVIDWLSCRGYDPSYGARPLKRVIQ 817 (853)
Q Consensus 784 ~~i~l~--~~~~~~~~l~~~~~~~~~GaR~l~r~i~ 817 (853)
+.|++. .++......+.+ ...|..|.|...+-
T Consensus 553 Q~i~l~~~~t~~~~~EaAkk--TeGfSGREiakLva 586 (630)
T KOG0742 553 QRIKLAGFDTGRKCSEAAKK--TEGFSGREIAKLVA 586 (630)
T ss_pred HEEEECCCHHHHHHHHHHHH--CCCCCHHHHHHHHH
T ss_conf 15544343188899999986--06875789999999
No 342
>KOG0743 consensus
Probab=97.45 E-value=0.0011 Score=48.91 Aligned_cols=112 Identities=28% Similarity=0.366 Sum_probs=77.6
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 36777866895288740777999999987348998444574378873135421745420245458999999860799769
Q gi|254780877|r 195 SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 195 ~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~i 274 (853)
.|--|..=+|-||||.|||+.|-.+|.- -++-||-|++++. +...| ++.++... +++-|
T Consensus 231 GkawKRGYLLYGPPGTGKSS~IaAmAn~----------L~ydIydLeLt~v------~~n~d--Lr~LL~~t---~~kSI 289 (457)
T KOG0743 231 GKAWKRGYLLYGPPGTGKSSFIAAMANY----------LNYDIYDLELTEV------KLDSD--LRHLLLAT---PNKSI 289 (457)
T ss_pred CCCCCCCCEEECCCCCCHHHHHHHHHHH----------CCCCEEEEEECCC------CCCHH--HHHHHHHC---CCCCE
T ss_conf 8450004120479999888999999720----------5873677440023------68389--99999728---99718
Q ss_pred EEECCHHHHCC---CCCC--------CCCCCHHHH---HHHHH-CCCCEEEEEEECHHHHHHHHHC-CHHHHHC
Q ss_conf 99636277302---6665--------543358888---76531-2466048997448999997300-1113202
Q gi|254780877|r 275 LFIDELHVLVG---AGKT--------DGAMDASNL---LKPSL-ARGELHCIGATTLDEYRKYIEK-DPALARR 332 (853)
Q Consensus 275 lfide~h~~~g---aG~~--------~g~~Daan~---LKP~L-arG~l~~IgaTT~~Eyrk~iEk-D~Al~RR 332 (853)
|.|.+|-+=+. .... .+.+..+-+ +--.- +-|+=|+|--||. |+|| ||||-|+
T Consensus 290 ivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTN-----h~EkLDPALlRp 358 (457)
T KOG0743 290 LLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTN-----HKEKLDPALLRP 358 (457)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEECC-----CHHHCCHHHCCC
T ss_conf 999612432304434555664546776606647756641343004887349999468-----710068866288
No 343
>KOG2035 consensus
Probab=97.44 E-value=0.0016 Score=47.65 Aligned_cols=199 Identities=20% Similarity=0.254 Sum_probs=126.2
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHC---------CCEE----
Q ss_conf 987298533333578999999963367778668952887407779999999873489984445---------7437----
Q gi|254780877|r 171 EARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLK---------GKRL---- 237 (853)
Q Consensus 171 ~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~---------~~~i---- 237 (853)
+-+-..+|-++++++--..+....+-..=.+-++-|+.|.||.+.+-.|-..+.--.|+.--- ++++
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEist 85 (351)
T KOG2035 6 KYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEIST 85 (351)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCEEEEEE
T ss_conf 50751143033188888999874145778707888889887211189999988578724505666788648886379999
Q ss_pred ----EEEEHHHHHCCCCCCCHHHHH--HHHHHHHHHHCCC--------CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf ----887313542174542024545--8999999860799--------76999636277302666554335888876531
Q gi|254780877|r 238 ----MALDMGALIAGAKFRGEFEER--LKSLLCEIRSEDG--------EIILFIDELHVLVGAGKTDGAMDASNLLKPSL 303 (853)
Q Consensus 238 ----~~ld~~~l~ag~~~rg~~e~r--~~~i~~~~~~~~~--------~~ilfide~h~~~gaG~~~g~~Daan~LKP~L 303 (853)
+-|.+.-==|| +-.| ++.+++++.+..+ =-++.|-|...+ +-||-.-|.-.+
T Consensus 86 vsS~yHlEitPSDaG------~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L--------T~dAQ~aLRRTM 151 (351)
T KOG2035 86 VSSNYHLEITPSDAG------NYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL--------TRDAQHALRRTM 151 (351)
T ss_pred ECCCCEEEECHHHCC------CCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEECHHHH--------HHHHHHHHHHHH
T ss_conf 425651774734337------511799999999987414133326665489998035765--------088999999999
Q ss_pred C--CCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 2--46604899744899999730011132023111115777678999999978986541496101589999986333202
Q gi|254780877|r 304 A--RGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYI 381 (853)
Q Consensus 304 a--rG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi 381 (853)
. .+.+|+|-.. .+-.+.||+ +-.|-=-|.|..||.++-..+|..+..+ .+....++.+...+.-|.|-+
T Consensus 152 EkYs~~~RlIl~c--ns~SriIep---IrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nL 222 (351)
T KOG2035 152 EKYSSNCRLILVC--NSTSRIIEP---IRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNL 222 (351)
T ss_pred HHHHCCCEEEEEE--CCCCCCHHH---HHHHEEEEECCCCCHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHCCCH
T ss_conf 9986071699992--674302267---7622058767899878999999999987----334484999999999706439
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 45767477899999999
Q gi|254780877|r 382 TDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 382 ~~r~lPDKAIDllDeA~ 398 (853)
-+||=.+..++
T Consensus 223 ------RrAllmlE~~~ 233 (351)
T KOG2035 223 ------RRALLMLEAVR 233 (351)
T ss_pred ------HHHHHHHHHHH
T ss_conf ------99999999998
No 344
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.012 Score=40.57 Aligned_cols=106 Identities=24% Similarity=0.425 Sum_probs=65.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC-CCCCH-HHCCCCHHCCC--CCCC--------CCCHH
Q ss_conf 1289872678616889999999872377653002244774034-53201-30477112035--6677--------42113
Q gi|254780877|r 598 MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK-HSVSR-LIGSPPGYVGY--EEGG--------ALTEA 665 (853)
Q Consensus 598 ~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~-~~vs~-LiGappGYvG~--~~gg--------~Lte~ 665 (853)
--.+||.||.|+||+.+|+.+|..|.-.... + .+-+.. |+.-. .-|+-|-|.-. .+|. .|.+.
T Consensus 23 ~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~----~-~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~~ 97 (324)
T PRK06871 23 HHALLFKADSGLGTEQLIRALAQWLMCQAPG----D-EQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINEK 97 (324)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCC----C-CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 4378768999978999999999998289999----9-9988889899999738999879984678887889999999999
Q ss_pred HHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCC
Q ss_conf 22156----4102202144149899999999840457887999778303315595485
Q gi|254780877|r 666 VRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSN 719 (853)
Q Consensus 666 vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN 719 (853)
+...| +-|++.|+.|+-...-.|.||-.|+|-- .||+||++|+
T Consensus 98 ~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp-----------~~~~fiL~t~ 144 (324)
T PRK06871 98 VSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-----------PNTYFLLQAD 144 (324)
T ss_pred HHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC-----------CCEEEEEEEC
T ss_conf 8646220596699975888857999999999833898-----------7838999878
No 345
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.019 Score=38.92 Aligned_cols=200 Identities=18% Similarity=0.211 Sum_probs=79.8
Q ss_pred CCCCCHHHHHHHHH----HCCCCHHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC---CHHHHH-HHHHHHH-H
Q ss_conf 87025999876687----27751788999-7599989999999987377887877754676---107886-4435699-8
Q gi|254780877|r 103 DSFVTAEKFLLAMV----METGGIGESLK-KCGLKFSRLEESIKKLRKGRVADSVNAEQGF---DALKKY-CRDLTEE-A 172 (853)
Q Consensus 103 ~~~I~~ehLLlAIl----~e~~s~a~iL~-~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~---~~L~ky-~~DLTe~-A 172 (853)
++.|+.+|+.-++- ..+-.++++|. .-|+-...+-..+.+..+-.......|=... ..+++. ..|+++. |
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDa 95 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDA 95 (515)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 77636489999999999808423336513777767104999999995688987777225316668651488641011364
Q ss_pred HCCCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE---EHHHHH
Q ss_conf 7298533333578999999963---3677786689528874077799999998734899844457437887---313542
Q gi|254780877|r 173 RNGKLDPVIGRDDEMRRAIQVL---SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL---DMGALI 246 (853)
Q Consensus 173 r~GkLDPVIGRe~EI~~~~~iL---~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l---d~~~l~ 246 (853)
..+. | =++||++++-. --+.|.-+.+|-|.-.=.|..-.+|=.-+-+ |+. +.+|-| +...+-
T Consensus 96 ASn~-----g-VddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE---PP~---hV~FIlATTe~~Kip 163 (515)
T COG2812 96 ASNT-----G-VDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE---PPS---HVKFILATTEPQKIP 163 (515)
T ss_pred HHCC-----C-HHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCC---CCC---CEEEEEECCCCCCCC
T ss_conf 4454-----8-679999998724688666641899831876437888887511136---866---748998538867684
Q ss_pred CCCCCCCH-------HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 17454202-------45458999999860799769996362773026665543-35888876531246604899744899
Q gi|254780877|r 247 AGAKFRGE-------FEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA-MDASNLLKPSLARGELHCIGATTLDE 318 (853)
Q Consensus 247 ag~~~rg~-------~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~-~Daan~LKP~LarG~l~~IgaTT~~E 318 (853)
.---.|-+ =++.+..-++.+...++ |-+-|+.-.++. -.++|| -|+.++|--+++-|+ |.-|.+.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia-~~a~Gs~RDalslLDq~i~~~~----~~It~~~ 236 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIA-RAAEGSLRDALSLLDQAIAFGE----GEITLES 236 (515)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCC----CCCCHHH
T ss_conf 04552122022257999999999999987448--754799999999-9828974567778999997067----7656999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780877|r 319 YRK 321 (853)
Q Consensus 319 yrk 321 (853)
-++
T Consensus 237 v~~ 239 (515)
T COG2812 237 VRD 239 (515)
T ss_pred HHH
T ss_conf 999
No 346
>pfam02861 Clp_N Clp amino terminal domain. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site.
Probab=97.41 E-value=0.00043 Score=52.25 Aligned_cols=51 Identities=39% Similarity=0.668 Sum_probs=45.5
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999719870259998766872775178-899975999899999999873
Q gi|254780877|r 94 SEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLR 144 (853)
Q Consensus 94 A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~ 144 (853)
|...|..+|+++|++||||+|++.++++.+ .+|.++|++.+.+++.+...+
T Consensus 1 A~~~A~~~~~~~i~~EHlLlall~~~~~~~~~il~~~g~~~~~l~~~i~~~~ 52 (53)
T pfam02861 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLL 52 (53)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9888978699853499999999865885899999995989999999999870
No 347
>pfam00931 NB-ARC NB-ARC domain.
Probab=97.40 E-value=0.013 Score=40.28 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHCCCCCC--CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH--------------HH
Q ss_conf 578999999963367778--66895288740777999999987348998444574378873135--------------42
Q gi|254780877|r 183 RDDEMRRAIQVLSRRTKN--NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA--------------LI 246 (853)
Q Consensus 183 Re~EI~~~~~iL~r~~k~--n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~--------------l~ 246 (853)
||+++++++.-|....++ =+-++|.+|||||+++..+.... .+.... +.++|- .++. +.
T Consensus 1 r~~~~~~i~~~L~~~~~~~~vI~I~G~gGiGKTtLA~~v~~~~---~i~~~F-~~~~wv-~vs~~~~~~~i~~~i~~~l~ 75 (285)
T pfam00931 1 REDMIEALIEKLLEMSENLGVVGIVGMGGVGKTTLAKQIYNDD---SVGGHF-DSVAWV-VVSKTYTEFRLQKDILQELG 75 (285)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCH---HHHHCC-CEEEEE-EECCCCCHHHHHHHHHHHHC
T ss_conf 9689999999986489895399988999563999999997165---565059-838999-97976668999999999856
Q ss_pred C--CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC-CEEEEEEECHHHHHHHH
Q ss_conf 1--74542024545899999986079976999636277302666554335888876531246-60489974489999973
Q gi|254780877|r 247 A--GAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG-ELHCIGATTLDEYRKYI 323 (853)
Q Consensus 247 a--g~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG-~l~~IgaTT~~Eyrk~i 323 (853)
. +.....+.++....+-+.+. .++..|++|++-.- -+...+..|....+ .-++|-+|-..+--+++
T Consensus 76 ~~~~~~~~~~~~~l~~~l~~~L~--~kr~LiVLDDVw~~---------~~~~~l~~~~~~~~~gSrIIvTTR~~~V~~~~ 144 (285)
T pfam00931 76 LDDSDWVEKNESELAVKIKEALL--RKRFLLVLDDVWEK---------NDWDKIGVPFPDGENGSRVIVTTRSESVAGRM 144 (285)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCH---------HHHHHHHCCCCCCCCCCEEEEECCCHHHHHHC
T ss_conf 66545555789999999999972--79669996388878---------99999734575789982799855758999873
Q ss_pred HCCHHHHHCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 0011132023111115777678999999978
Q gi|254780877|r 324 EKDPALARRFQSLLVGEPTVTDTISILRGLK 354 (853)
Q Consensus 324 EkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~ 354 (853)
...-..+.|+..+.+++..++...+
T Consensus 145 ------~~~~~~~~l~~L~~~es~~Lf~~~a 169 (285)
T pfam00931 145 ------GGTSKPHEVESLEPEESWELFSNKV 169 (285)
T ss_pred ------CCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf ------7888347616898799999999984
No 348
>KOG1970 consensus
Probab=97.37 E-value=0.0071 Score=42.31 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=85.7
Q ss_pred CCCCCHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHCC---CCCCCE-EEECCCCCCHHHHHHHHHHHHH----C
Q ss_conf 4676107886443-56998729853333357899999996336---777866-8952887407779999999873----4
Q gi|254780877|r 155 EQGFDALKKYCRD-LTEEARNGKLDPVIGRDDEMRRAIQVLSR---RTKNNP-VLIGDPGVGKTAIIEGLASRII----N 225 (853)
Q Consensus 155 e~~~~~L~ky~~D-LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r---~~k~n~-~lvGe~GvGKtaive~la~~i~----~ 225 (853)
+....+.++|--+ +-++|-..| .=+||++-++.+.- .-++++ +|.|++|+|||+.|+-|+.-.. +
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkk------KI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970 67 DEFELWVEKYKPRTLEELAVHKK------KISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred CCCCHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEE
T ss_conf 33322577608562888755177------489999999999974536676079985798887131999999864802123
Q ss_pred C------CCCHHHCCCEEEEEEHHHHHCCCCCCC---HHH---HHH-H-HHHHHH--HHCCCCEEEEECCHHHHCCCCCC
Q ss_conf 8------998444574378873135421745420---245---458-9-999998--60799769996362773026665
Q gi|254780877|r 226 G------DIPESLKGKRLMALDMGALIAGAKFRG---EFE---ERL-K-SLLCEI--RSEDGEIILFIDELHVLVGAGKT 289 (853)
Q Consensus 226 ~------~vp~~l~~~~i~~ld~~~l~ag~~~rg---~~e---~r~-~-~i~~~~--~~~~~~~ilfide~h~~~gaG~~ 289 (853)
- +.|+.+.+-..+.- -.|-. +|| +|. | +.+.-. .....+.+|+|||+....+--
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~--------~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-- 210 (634)
T KOG1970 141 WSNPINLKEPENLHNETSFLM--------FPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-- 210 (634)
T ss_pred ECCCCCCCCCCCCCCCCHHCC--------CCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHHH--
T ss_conf 047766566555455440013--------3036678999989999876231653133334675079850261444003--
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEEEECHHH-------HHHHHHCCHHHHHCCCEEECCC
Q ss_conf 54335888876531246604899744899-------9997300111320231111157
Q gi|254780877|r 290 DGAMDASNLLKPSLARGELHCIGATTLDE-------YRKYIEKDPALARRFQSLLVGE 340 (853)
Q Consensus 290 ~g~~Daan~LKP~LarG~l~~IgaTT~~E-------yrk~iEkD~Al~RRFq~i~V~E 340 (853)
..--.-|+|.-+.++|.+-+|-.-|..+ ||++. +|--..-|-..|.-++
T Consensus 211 -~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~-~d~q~~~ri~~IsFNP 266 (634)
T KOG1970 211 -DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFP-KDIQEEPRISNISFNP 266 (634)
T ss_pred -HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHCH-HHHHHCCCCCEEEECC
T ss_conf -6999999999998457776799986353578763434242-6565335852476157
No 349
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.31 E-value=0.002 Score=46.72 Aligned_cols=132 Identities=22% Similarity=0.357 Sum_probs=64.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCC-------CHHH-CCCEEEEEEHHHHHCCC----------------CCC---C
Q ss_conf 6689528874077799999998734899-------8444-57437887313542174----------------542---0
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDI-------PESL-KGKRLMALDMGALIAGA----------------KFR---G 253 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~v-------p~~l-~~~~i~~ld~~~l~ag~----------------~~r---g 253 (853)
..++.|+||||||+++.-++..+.+..+ ++.. .+.| +..++-.+.+|. +|. .
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R-~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~ 79 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRR-IGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLE 79 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCE-EEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHH
T ss_conf 98997899988999999999999867970748993021258937-89999990478267744406887754577166689
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC-CCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHC
Q ss_conf 2454589999998607997699963627730266655-433588887653124660489974489999973001113202
Q gi|254780877|r 254 EFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTD-GAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARR 332 (853)
Q Consensus 254 ~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~-g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RR 332 (853)
.||.-...+++..... .-+++||||-- -| -|-.....+...|.. .-.+||+---.-+.-++ ..+.+|
T Consensus 80 ~fe~~~~~~L~~a~~~--~dlivIDEIG~------mEl~s~~F~~~v~~~l~~-~~~vl~ti~~~~~~~~v---~~i~~~ 147 (168)
T pfam03266 80 EFEEIALPALRRALEE--ADLIIIDEIGP------MELKSPKFREAIEEVLSS-NKPVLAVVHRRSDSPLV---ERIRRR 147 (168)
T ss_pred HHHHHHHHHHHHCCCC--CCEEEEECCCH------HHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHH---HHHHCC
T ss_conf 9999999999840668--98999976314------533149999999999669-99799999725898389---997417
Q ss_pred --CCEEECCCCCHHH
Q ss_conf --3111115777678
Q gi|254780877|r 333 --FQSLLVGEPTVTD 345 (853)
Q Consensus 333 --Fq~i~V~Eps~~~ 345 (853)
++.+.|.+-+.+.
T Consensus 148 ~d~~i~~vt~~NRd~ 162 (168)
T pfam03266 148 PDVKIFVVTEENRDA 162 (168)
T ss_pred CCCEEEEECHHHHHH
T ss_conf 993899978688664
No 350
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.003 Score=45.40 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCH
Q ss_conf 48999999999987410123656651289872678616889999999872377653002244774034532013047711
Q gi|254780877|r 573 QSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPG 652 (853)
Q Consensus 573 q~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappG 652 (853)
+++.++.+.++++..| ---.+||.||.|+|||.+|+.+|..+.+....-.. ... .+..+. .+-....
T Consensus 3 ~e~iv~~L~nai~~~k--------lsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~--~~~--~~~~~~-~id~~~~ 69 (303)
T PRK07132 3 DNNIIKSLDNLAKQNK--------ISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLN--LEE--LPYNIF-LFDIFDE 69 (303)
T ss_pred CHHHHHHHHHHHHCCC--------CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CCC--CCCCCE-EECCCCC
T ss_conf 0389999999998499--------76168867899867999999999997299878887--545--653230-4133222
Q ss_pred HCCCCCCCCCCHHHHCCC-----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHC
Q ss_conf 203566774211322156-----410220214414989999999984045788799977830331559548512687640
Q gi|254780877|r 653 YVGYEEGGALTEAVRRHP-----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIE 727 (853)
Q Consensus 653 YvG~~~gg~Lte~vr~~P-----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~ 727 (853)
-..-+++=.+.+.+...| |-|+.+||+|+.+++-+|.||-.|+|-- .|+++|+.|+--.
T Consensus 70 ~i~~~~i~~~i~~~~~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtLEEPp-----------~~~~fil~t~~~~----- 133 (303)
T PRK07132 70 DLSKEEFLSAIEKFSFSSFVSNQKKILIIKNIEKTSNSSLNALLKTIEEPS-----------KNTYFLLTTKNIN----- 133 (303)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCCC-----------CCEEEEEEECCHH-----
T ss_conf 001688999999997366556870699981655339999999998703898-----------6848999728824-----
Q ss_pred CHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 326799999999986288577266681586288998999999
Q gi|254780877|r 728 DGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKI 769 (853)
Q Consensus 728 ~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i 769 (853)
..+|-.+.|. .++-|+|++.+++...
T Consensus 134 ---------------~il~TI~SRC-q~~~f~~~~~~~i~~~ 159 (303)
T PRK07132 134 ---------------KVIPTIVSRC-QVINVKEPDQQKILAK 159 (303)
T ss_pred ---------------HCCHHHHHCC-EEEECCCCCHHHHHHH
T ss_conf ---------------3837786366-5663788999999999
No 351
>KOG0742 consensus
Probab=97.29 E-value=0.0052 Score=43.40 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=84.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 66895288740777999999987348998444574378873135421745420245458999999860799769996362
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDEL 280 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~ 280 (853)
|.++-|+||.|||-....||++ +|- + |.+-.|.=||-.. .|---.+..|.+..++++...+|||||.
T Consensus 386 NilfyGPPGTGKTm~ArelAr~--SGl------D---YA~mTGGDVAPlG--~qaVTkiH~lFDWakkS~rGLllFIDEA 452 (630)
T KOG0742 386 NILFYGPPGTGKTMFARELARH--SGL------D---YAIMTGGDVAPLG--AQAVTKIHKLFDWAKKSRRGLLLFIDEA 452 (630)
T ss_pred HEEEECCCCCCHHHHHHHHHHH--CCC------C---EEHHCCCCCCCCH--HHHHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 0032479998604999999885--287------4---1001378755521--7889999998788751566449986116
Q ss_pred HHHCCCCCCCC-CCCHHHHHHHHHC-----CCCEEEEEEE-CHHHHHHHHHCCHHHHHCC-CEEECCCCCHHHHHHHHHH
Q ss_conf 77302666554-3358888765312-----4660489974-4899999730011132023-1111157776789999999
Q gi|254780877|r 281 HVLVGAGKTDG-AMDASNLLKPSLA-----RGELHCIGAT-TLDEYRKYIEKDPALARRF-QSLLVGEPTVTDTISILRG 352 (853)
Q Consensus 281 h~~~gaG~~~g-~~Daan~LKP~La-----rG~l~~IgaT-T~~Eyrk~iEkD~Al~RRF-q~i~V~Eps~~~t~~iL~g 352 (853)
...+---+..+ |-|--.-|-..|- .-+|-.+-|| -|..+ |.|...|| |.|.-.=|..++-..+|+-
T Consensus 453 DAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdl------DsAV~DRide~veFpLPGeEERfkll~l 526 (630)
T KOG0742 453 DAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL------DSAVNDRIDEVVEFPLPGEEERFKLLNL 526 (630)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCH------HHHHHHHHHHHEECCCCCHHHHHHHHHH
T ss_conf 7899875201025889999988987625655426899605883210------1678765554130689977899999999
Q ss_pred H
Q ss_conf 7
Q gi|254780877|r 353 L 353 (853)
Q Consensus 353 l 353 (853)
-
T Consensus 527 Y 527 (630)
T KOG0742 527 Y 527 (630)
T ss_pred H
T ss_conf 9
No 352
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.28 E-value=0.00058 Score=51.15 Aligned_cols=100 Identities=29% Similarity=0.414 Sum_probs=68.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCE
Q ss_conf 66512898726786168899999998723776530022-44774034532013047711203566774211322156410
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQV 673 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sV 673 (853)
++|-|-+||+||||+|||.+--+.-..++..+.+++++ |=-||.-+.-..--+-. -+|..-...|--.+|+.| -|
T Consensus 255 ~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~---k~gltfa~~LRa~LRqDP-Dv 330 (500)
T COG2804 255 NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNP---KIGLTFARALRAILRQDP-DV 330 (500)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCEEECCC---CCCCCHHHHHHHHHCCCC-CE
T ss_conf 28970899968999988999999999862788508984078045159851563140---359978999999866599-85
Q ss_pred EEEHHHHHCCHHHHHHHHHHHHCCEEE
Q ss_conf 220214414989999999984045788
Q gi|254780877|r 674 VLFDEIEKAHSDVHNILLQVLDDGRLT 700 (853)
Q Consensus 674 il~DEiEKah~~v~~~llqild~G~lt 700 (853)
|+..||.- .+.-.+..|.--.|+|-
T Consensus 331 ImVGEIRD--~ETAeiavqAalTGHLV 355 (500)
T COG2804 331 IMVGEIRD--LETAEIAVQAALTGHLV 355 (500)
T ss_pred EEEECCCC--HHHHHHHHHHHHCCCEE
T ss_conf 99835577--88999999998428867
No 353
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.27 E-value=0.0041 Score=44.26 Aligned_cols=143 Identities=24% Similarity=0.382 Sum_probs=74.3
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHHHCCCC
Q ss_conf 777866895288740777999999987348--9984445743788731354217454202--454589999998607997
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIAGAKFRGE--FEERLKSLLCEIRSEDGE 272 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--~e~r~~~i~~~~~~~~~~ 272 (853)
..|+|.+|||-||+|||+|-.-||+++-.. |....+. +-+..++..+.+ ..|| |-+.=..++.++...+ +
T Consensus 2 ~~kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D~~Ie--~~~g~si~~If~---~~Ge~~FR~~E~~~l~~l~~~~-~ 75 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE--KRTGADIGWVFD---VEGEEGFRDREEKVINELTEKQ-G 75 (172)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHHCCCHHHHHH---HHHHHHHHHHHHHHHHHHHCCC-C
T ss_conf 988828988999998899999999996999687809999--997989999999---9749999999999999885479-9
Q ss_pred EEEEECCHHHHCCCCCCCCCCCHH--HHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHH-H
Q ss_conf 699963627730266655433588--8876531246604899744899999730011132023111115777678999-9
Q gi|254780877|r 273 IILFIDELHVLVGAGKTDGAMDAS--NLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTIS-I 349 (853)
Q Consensus 273 ~ilfide~h~~~gaG~~~g~~Daa--n~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~-i 349 (853)
+|+ ..|++- -++-. +.|+ ..|.+=.+- ++++.-.+.+..++ .|. .+...+..++++ +
T Consensus 76 ~VI---------stGGG~-v~~~~~~~~L~---~~g~vv~L~-~~~~~~~~R~~~~~--~RP----ll~~~~~~~~~~~l 135 (172)
T PRK05057 76 IVL---------ATGGGS-VKSRETRNRLS---ARGVVVYLE-TTIEKQLARTQRDK--KRP----LLQVDDPREVLEAL 135 (172)
T ss_pred EEE---------ECCCCC-CCCHHHHHHHH---HCCEEEEEE-CCHHHHHHHHCCCC--CCC----CCCCCCHHHHHHHH
T ss_conf 799---------789853-58899999999---669589995-99899999805899--999----79899879999999
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 9997898654149610
Q gi|254780877|r 350 LRGLKERYEQHHKVRI 365 (853)
Q Consensus 350 L~gl~~~yE~~H~V~i 365 (853)
+..-.+.|+++..+.|
T Consensus 136 ~~~R~~~Y~~~Ad~~I 151 (172)
T PRK05057 136 ANERNPLYEEIADVTV 151 (172)
T ss_pred HHHHHHHHHHHCCEEE
T ss_conf 9999999998699999
No 354
>KOG2680 consensus
Probab=97.27 E-value=0.0022 Score=46.53 Aligned_cols=139 Identities=25% Similarity=0.411 Sum_probs=96.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
.-||.|-||-=|.|.-.++..-. .|+.| ||- .| -.| .|++.||+
T Consensus 254 lALFsGdTGEIr~EvRdqin~KV------------~eWre------------------EGK--Ae---ivp-GVLFIDEv 297 (454)
T KOG2680 254 LALFSGDTGEIRSEVRDQINTKV------------AEWRE------------------EGK--AE---IVP-GVLFIDEV 297 (454)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH------------HHHHH------------------CCC--EE---ECC-CEEEEEEE
T ss_conf 89970786520188898887888------------98886------------------177--24---225-51787400
Q ss_pred HHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECC
Q ss_conf 41498999999998404578879997783033155954851268764032679999999998628857726668158628
Q gi|254780877|r 680 EKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFE 759 (853)
Q Consensus 680 EKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~ 759 (853)
.--.-+-|.+|-..+++ ||. -++||.+|-|-..+........ .-.|-.||+|+ -||.-.
T Consensus 298 HMLDIEcFsFlNrAlE~-----------d~~-PiiimaTNrgit~iRGTn~~Sp--------hGiP~D~lDR~-lII~t~ 356 (454)
T KOG2680 298 HMLDIECFSFLNRALEN-----------DMA-PIIIMATNRGITRIRGTNYRSP--------HGIPIDLLDRM-LIISTQ 356 (454)
T ss_pred HHHHHHHHHHHHHHHHH-----------CCC-CEEEEECCCCEEEEECCCCCCC--------CCCCHHHHHHH-HEEECC
T ss_conf 21115799988887650-----------468-5799972775577605777898--------88867776441-255256
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC
Q ss_conf 899899999999999999999985798999988999999970898
Q gi|254780877|r 760 KLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYD 804 (853)
Q Consensus 760 ~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~ 804 (853)
|++.+++++|++..+ +.=.+.+++.|+++|..-|-+
T Consensus 357 py~~~d~~~IL~iRc---------~EEdv~m~~~A~d~Lt~i~~~ 392 (454)
T KOG2680 357 PYTEEDIKKILRIRC---------QEEDVEMNPDALDLLTKIGEA 392 (454)
T ss_pred CCCHHHHHHHHHHHH---------HHHCCCCCHHHHHHHHHHHHH
T ss_conf 576889999987550---------052133587899999986131
No 355
>KOG0741 consensus
Probab=97.25 E-value=0.00085 Score=49.81 Aligned_cols=87 Identities=26% Similarity=0.450 Sum_probs=59.4
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC----CHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC
Q ss_conf 6566512898726786168899999998723776530022----447740345320130477112035667742113221
Q gi|254780877|r 593 DPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI----DMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR 668 (853)
Q Consensus 593 ~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~----dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~ 668 (853)
..+.|+-|.||.||+|+|||-||-.+|.. +.=.+|++ ||.-|+|..-++-+-+. -+---+
T Consensus 533 s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~---S~FPFvKiiSpe~miG~sEsaKc~~i~k~-------------F~DAYk 596 (744)
T KOG0741 533 SERSPLVSVLLEGPPGSGKTALAAKIALS---SDFPFVKIISPEDMIGLSESAKCAHIKKI-------------FEDAYK 596 (744)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH---CCCCEEEEECHHHHCCCCHHHHHHHHHHH-------------HHHHHC
T ss_conf 46676358998669988768899999752---79984797377870374667889999998-------------887633
Q ss_pred CCCCEEEEHHHHHC------CHHHHHHHHHHHH
Q ss_conf 56410220214414------9899999999840
Q gi|254780877|r 669 HPYQVVLFDEIEKA------HSDVHNILLQVLD 695 (853)
Q Consensus 669 ~P~sVil~DEiEKa------h~~v~~~llqild 695 (853)
.|-|||++|+||.- .|..-|+.||.|-
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~ 629 (744)
T KOG0741 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALL 629 (744)
T ss_pred CCCEEEEECCHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 865089981556562002468403579999999
No 356
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.25 E-value=0.00073 Score=50.37 Aligned_cols=99 Identities=26% Similarity=0.447 Sum_probs=66.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCE
Q ss_conf 66512898726786168899999998723776530022-44774034532013047711203566774211322156410
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQV 673 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sV 673 (853)
++|-|.+||+||||.|||.+.-++-..+-....+++.+ |=-||.-++....=+....| ..|. ..|...+|+.| -|
T Consensus 77 ~~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~tiEdPvE~~~~~~~Q~~v~~~~g-~~~~--~~lr~~LR~dP-Dv 152 (264)
T cd01129 77 EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAG-LTFA--RGLRAILRQDP-DI 152 (264)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEECCCCC-CCHH--HHHHHHHCCCC-CE
T ss_conf 08998899978999977999999998643688508998676314568873576166668-7899--99999855699-98
Q ss_pred EEEHHHHHCCHHHHHHHHHHHHCCEE
Q ss_conf 22021441498999999998404578
Q gi|254780877|r 674 VLFDEIEKAHSDVHNILLQVLDDGRL 699 (853)
Q Consensus 674 il~DEiEKah~~v~~~llqild~G~l 699 (853)
|++.||- .++.....++.-..|++
T Consensus 153 i~igEiR--D~eta~~a~~aa~tGhl 176 (264)
T cd01129 153 IMVGEIR--DAETAEIAVQAALTGHL 176 (264)
T ss_pred EEECCCC--CHHHHHHHHHHHHHCCE
T ss_conf 8746889--99999999999970996
No 357
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.001 Score=49.13 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=52.8
Q ss_pred CCEEEEEECCCCHHHHHH-HHHHHHHHCC--CCCCCCCCCH---HHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCC
Q ss_conf 512898726786168899-9999987237--7653002244---774034532013047711203566774211322156
Q gi|254780877|r 597 PMGSFMFLGPTGVGKTEL-VKSLARLLFD--DENSMIRIDM---SEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHP 670 (853)
Q Consensus 597 p~~~flf~GptGvGKTel-ak~la~~lf~--~~~~lir~dM---sey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P 670 (853)
+-+++.|+||||||||.+ ||.=|++.+. ..-+||+.|- +-.-+=-..++++|-| =||-++- -.|-+++.++-
T Consensus 222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iP-v~vv~~~-~el~~al~~~~ 299 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP-FYPVKDI-KKFKETLARDG 299 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC-EEEEECH-HHHHHHHHHCC
T ss_conf 762999989999888999999999999974992799952665377999999999985994-5995189-99999998569
Q ss_pred CCEEEEHHHHHCCHHH
Q ss_conf 4102202144149899
Q gi|254780877|r 671 YQVVLFDEIEKAHSDV 686 (853)
Q Consensus 671 ~sVil~DEiEKah~~v 686 (853)
+-+||.|-.=..|.+.
T Consensus 300 ~DlILIDTAGrS~rd~ 315 (432)
T PRK12724 300 SELILIDTAGYSHRNL 315 (432)
T ss_pred CCEEEEECCCCCCCCH
T ss_conf 9999992999897899
No 358
>KOG0478 consensus
Probab=97.24 E-value=0.0044 Score=44.01 Aligned_cols=228 Identities=18% Similarity=0.216 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCCC---CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 000123554776745948999999999987410-1236---566512898726786168899999998723776530022
Q gi|254780877|r 557 EKFLRIETEISKSVIGQSAAVESVSNALRRFRA-GLQD---PQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI 632 (853)
Q Consensus 557 ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~-gl~~---~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~ 632 (853)
+...-|...+.-.|+|.+..-..+.-.+--... .+.. -+.-| ..|+||-+|+||+.+-+-.++.+ ++..
T Consensus 418 diy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~I-NILL~GDPGtsKSqlLqyv~~l~---pRg~--- 490 (804)
T KOG0478 418 DIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDI-NILLVGDPGTSKSQLLQYCHRLL---PRGV--- 490 (804)
T ss_pred CHHHHHHHHHCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC-EEEEECCCCCCHHHHHHHHHHHC---CCCE---
T ss_conf 0999998850656534422666677887568763223344424552-28994699867899999999747---7540---
Q ss_pred CHHHHCC--CCCCCHHHCCCCHHCCCC-CCCCC---CHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCE
Q ss_conf 4477403--453201304771120356-67742---11322156410220214414989999999984045788799977
Q gi|254780877|r 633 DMSEYME--KHSVSRLIGSPPGYVGYE-EGGAL---TEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRT 706 (853)
Q Consensus 633 dMsey~e--~~~vs~LiGappGYvG~~-~gg~L---te~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~ 706 (853)
|.. ..|...|. -||-.| ++++| +.++--.-..|-.+||++|....-.+.|+++|+--+++=
T Consensus 491 ----yTSGkGsSavGLT----ayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSI----- 557 (804)
T KOG0478 491 ----YTSGKGSSAVGLT----AYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSI----- 557 (804)
T ss_pred ----EECCCCCCHHCCE----EEEEECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf ----4058763022003----567765765546650484897289657711233332778899999998763117-----
Q ss_pred EECCCCEEEECCCHHHHHHHCCH-HHHHH-HHHHHHH-HHCCHHHHCCCCCEE-ECCCCCHHH----HHHHHHHHHH---
Q ss_conf 83033155954851268764032-67999-9999998-628857726668158-628899899----9999999999---
Q gi|254780877|r 707 VDFRNTLIIMTSNLGAEYLIEDG-DSVHD-KVMGIVR-SAFKPEFLNRLDEII-LFEKLRKED----MAKIVRIQLG--- 775 (853)
Q Consensus 707 v~f~n~iii~TsN~G~~~~~~~~-~~~~~-~~~~~l~-~~f~peflnRid~iv-~F~~l~~~~----~~~i~~~~l~--- 775 (853)
--+=||.|-|.-.-.++..+ ...+- .-...++ =..+|-+|.|+|-|+ .|.+-++.. ..+|+.++.+
T Consensus 558 ---AKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~ 634 (804)
T KOG0478 558 ---AKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGE 634 (804)
T ss_pred ---HHCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf ---43022342166530344535432457999762321678805643233789984275326778999999984145552
Q ss_pred ------------HHHHHHHHCCCEEEECHHHHHHHHHCCCCCCC
Q ss_conf ------------99999985798999988999999970898220
Q gi|254780877|r 776 ------------RVLSLIKERNISMDFDDQVIDWLSCRGYDPSY 807 (853)
Q Consensus 776 ------------~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~ 807 (853)
+..-+.+.+.+.-.+++++...+....++..-
T Consensus 635 ~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk 678 (804)
T KOG0478 635 KQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRK 678 (804)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 10257786899999999974257865568999999998665665
No 359
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.22 E-value=0.0011 Score=48.82 Aligned_cols=94 Identities=26% Similarity=0.516 Sum_probs=64.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCC-CCCCCCC-CHHHHCCCCCCCHH----HCCCCHHCCCCCCCCCCHHHHCCCCC
Q ss_conf 289872678616889999999872377-6530022-44774034532013----04771120356677421132215641
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDD-ENSMIRI-DMSEYMEKHSVSRL----IGSPPGYVGYEEGGALTEAVRRHPYQ 672 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~-~~~lir~-dMsey~e~~~vs~L----iGappGYvG~~~gg~Lte~vr~~P~s 672 (853)
|-+|++||||.|||.+..++.+++-.. ...++.+ |=-||..++..+-. +|.. ...|.+ .|..++|+.| .
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~e~g~~--~~sf~~--~lr~aLR~~P-D 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLD--TLSFEN--ALKAALRQDP-D 76 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEECCCCCC--CCCHHH--HHHHHHHHCC-C
T ss_conf 3899989999979999999998536378836999647377523676448873330788--637999--9999985488-8
Q ss_pred EEEEHHHHHCCHHHHHHHHHHHHCCEE
Q ss_conf 022021441498999999998404578
Q gi|254780877|r 673 VVLFDEIEKAHSDVHNILLQVLDDGRL 699 (853)
Q Consensus 673 Vil~DEiEKah~~v~~~llqild~G~l 699 (853)
||++.|+- .++.....++.-..|++
T Consensus 77 vI~vGEiR--d~et~~~al~aa~TGHl 101 (198)
T cd01131 77 VILVGEMR--DLETIRLALTAAETGHL 101 (198)
T ss_pred EEECCCCC--CHHHHHHHHHHHHCCCE
T ss_conf 57527778--99999999999971993
No 360
>KOG2680 consensus
Probab=97.22 E-value=0.003 Score=45.33 Aligned_cols=75 Identities=29% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 320231111157776789999999789865414961015899999863----3320245767477899999999987541
Q gi|254780877|r 329 LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVL----SNRYITDRFLPDKAIDLMDEASARVRMQ 404 (853)
Q Consensus 329 l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~l----s~rYi~~r~lPDKAIDllDeA~A~~~i~ 404 (853)
|-.|.-.|.-.+-+.+++..||+-- . .-..|.+.++|+..-+.+ |-|| ||.|+ .|++.+.++
T Consensus 346 ~lDR~lII~t~py~~~d~~~IL~iR---c-~EEdv~m~~~A~d~Lt~i~~~tsLRY---------ai~Li-t~a~~~~~k 411 (454)
T KOG2680 346 LLDRMLIISTQPYTEEDIKKILRIR---C-QEEDVEMNPDALDLLTKIGEATSLRY---------AIHLI-TAASLVCLK 411 (454)
T ss_pred HHHHHHEEECCCCCHHHHHHHHHHH---H-HHHCCCCCHHHHHHHHHHHHHHHHHH---------HHHHH-HHHHHHHHH
T ss_conf 7644125525657688999998755---0-05213358789999998613123789---------99998-899999987
Q ss_pred HCCCHHHHHHHHH
Q ss_conf 0222145788799
Q gi|254780877|r 405 IDTKPEVLDELDR 417 (853)
Q Consensus 405 ~~~~P~~l~~l~r 417 (853)
..+.-.+.++++|
T Consensus 412 rk~~~v~~~di~r 424 (454)
T KOG2680 412 RKGKVVEVDDIER 424 (454)
T ss_pred HCCCEEEHHHHHH
T ss_conf 5485654467899
No 361
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=97.20 E-value=0.0069 Score=42.41 Aligned_cols=213 Identities=21% Similarity=0.330 Sum_probs=128.8
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC-CCCCCCCCH-----H-------
Q ss_conf 745948999999999987410123656651289872678616889999999872377-653002244-----7-------
Q gi|254780877|r 569 SVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD-ENSMIRIDM-----S------- 635 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~-~~~lir~dM-----s------- 635 (853)
-||||+....++.-.. -|| -||..|-.|.=|+||+..|+.|+..|=.- --+-|+|++ +
T Consensus 5 AiVGQe~LK~ALLL~A-------v~P--~iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C~ 75 (688)
T TIGR02442 5 AIVGQEDLKLALLLNA-------VNP--RIGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEECR 75 (688)
T ss_pred CCCCHHHHHHHHHHEE-------ECC--CCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 2214279865321002-------526--6370788778886278988848761602366404788877788704006767
Q ss_pred -HHCCCCCC------------------CHHHCC-------CCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHH
Q ss_conf -74034532------------------013047-------7112035667742113221564102202144149899999
Q gi|254780877|r 636 -EYMEKHSV------------------SRLIGS-------PPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNI 689 (853)
Q Consensus 636 -ey~e~~~v------------------s~LiGa-------ppGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~ 689 (853)
.|.+..+. -|++|+ --|--=| |.|+|-+|=| .|+..|||-==|-.+.|+
T Consensus 76 ~~~~~~G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~F-qPGLLA~Ahr----GiLYiDEVNLLdDhlVD~ 150 (688)
T TIGR02442 76 RKLEEQGTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAF-QPGLLAEAHR----GILYIDEVNLLDDHLVDV 150 (688)
T ss_pred HHHHCCCCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHH-CCCCHHHHCC----CEEEEEEECCCCCHHHHH
T ss_conf 55520477531358735886587752332213054899987185660-7886175468----716785200144147789
Q ss_pred HHHHHHCCEEEC-CCCCEEEC-CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCC-EEECCCCCHHHH
Q ss_conf 999840457887-99977830-331559548512687640326799999999986288577266681-586288998999
Q gi|254780877|r 690 LLQVLDDGRLTD-SQGRTVDF-RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDE-IILFEKLRKEDM 766 (853)
Q Consensus 690 llqild~G~ltd-~~G~~v~f-~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~-iv~F~~l~~~~~ 766 (853)
||...-.|..+= -.|-.++- ...+.|=|=| .=.+.++|.||.||-- |=+=.+.+.+..
T Consensus 151 lLDaaA~G~n~VEREG~S~~Hparf~L~GTMN-------------------PEEG~LRPQLLDRFGL~V~v~~~~d~~~R 211 (688)
T TIGR02442 151 LLDAAAMGVNRVEREGLSVSHPARFVLIGTMN-------------------PEEGDLRPQLLDRFGLCVDVAASRDPEER 211 (688)
T ss_pred HHHHHHCCCEEEEECCCCHHCHHHHHHHCCCC-------------------CCHHHHCHHHHHHHHCEEEECCCCCHHHH
T ss_conf 99987648006763574300114553220378-------------------52211022324244011550243586689
Q ss_pred HHHHHHH-----------------HHHHHHHHH-HCCC--EEEECHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 9999999-----------------999999998-5798--999988999999970898220621579999
Q gi|254780877|r 767 AKIVRIQ-----------------LGRVLSLIK-ERNI--SMDFDDQVIDWLSCRGYDPSYGARPLKRVI 816 (853)
Q Consensus 767 ~~i~~~~-----------------l~~l~~~l~-~~~i--~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i 816 (853)
..|++.. -++|..+|. .+.+ .+.++++.+.+|++-|. .+|..+.|-=|
T Consensus 212 ~Ev~~Rrl~~d~dP~~F~~~~~~~~~~L~~~I~~AR~lLp~V~l~d~~~~~I~~lc~--~~~V~GhRAdi 279 (688)
T TIGR02442 212 VEVIRRRLAFDADPEAFAARWAAEQEELRERIAAARSLLPSVRLSDSLLRFISELCI--EFGVDGHRADI 279 (688)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH--HCCCCCCHHHH
T ss_conf 999999975402677889999999999999999999754776588899999999999--72888525999
No 362
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.022 Score=38.40 Aligned_cols=110 Identities=24% Similarity=0.400 Sum_probs=67.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH--CCCCHH-----------CCCCCCCC
Q ss_conf 66512898726786168899999998723776530022447740345320130--477112-----------03566774
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI--GSPPGY-----------VGYEEGGA 661 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li--GappGY-----------vG~~~gg~ 661 (853)
+|=--.+||.||.|+||+.+|+.+|..|+-.... + .+.+..-..-+++ |+-|-| +|-|+-=.
T Consensus 19 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~----~-~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~ 93 (328)
T PRK05707 19 GRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQ----G-GGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRE 93 (328)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC----C-CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 9822046447999867999999999998489999----9-8999888899998758999879984266677697999999
Q ss_pred CCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCH
Q ss_conf 211322156----41022021441498999999998404578879997783033155954851
Q gi|254780877|r 662 LTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNL 720 (853)
Q Consensus 662 Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~ 720 (853)
|.+.+...| |-|++.|+.|+.+..-.|.||-.|+|=- .||+||+.|+-
T Consensus 94 l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp-----------~~t~fiL~t~~ 145 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-----------GQTVLLLISHQ 145 (328)
T ss_pred HHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCC-----------CCEEEEEEECC
T ss_conf 99998317667895799950287738999999999850789-----------87599986099
No 363
>PRK09087 hypothetical protein; Validated
Probab=97.17 E-value=0.033 Score=36.85 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 78999999963367778668952887407779999999873489984445743788731354217454202454589999
Q gi|254780877|r 184 DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLL 263 (853)
Q Consensus 184 e~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~ 263 (853)
.++.-.+++-...-..+-.+|.|++|.|||.+.+.++.+.-. .. ++...+ .. .+.
T Consensus 29 N~~a~~~l~~~~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a----------~~--~~~~~~----------~~---~~~ 83 (226)
T PRK09087 29 NRAAVSLVDRWPNWPSPVVVLAGPVGSGKTHLASIWREKADA----------LL--VHPNEI----------GS---DAA 83 (226)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----------EE--ECHHHC----------CH---HHH
T ss_conf 999999998472677775899899999886999999998099----------68--366874----------74---667
Q ss_pred HHHHHCCCCEEEEECCHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHC---CCEEECC
Q ss_conf 99860799769996362773026665543-3588887653124660489974489999973001113202---3111115
Q gi|254780877|r 264 CEIRSEDGEIILFIDELHVLVGAGKTDGA-MDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARR---FQSLLVG 339 (853)
Q Consensus 264 ~~~~~~~~~~ilfide~h~~~gaG~~~g~-~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RR---Fq~i~V~ 339 (853)
... ..+. ++||+++.+ +-.+-. ...=|.++ -..+.|-+.+.+.|.+..- +-+-|..| +..+.++
T Consensus 84 ~~~--~~~~--~~idd~d~~---~~dEe~LFhl~N~~~--~~~~~LLlts~~~p~~l~~---~L~DL~SRL~~~~~~~I~ 151 (226)
T PRK09087 84 NAA--AERP--VLIEDIDAG---GFDETGLFHLINSVR--QAGTSLLMTSRLWPSAWNV---KLPDLKSRLKAATVVEIG 151 (226)
T ss_pred HHH--CCCC--EEEECCCCC---CCCHHHHHHHHHHHH--HCCCEEEEECCCCHHHCCC---CCHHHHHHHHCCEEEEEC
T ss_conf 653--2798--899748777---747899999999998--5398799988989566676---246899998578579835
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 7776789999999789865414961015899999863332024576747789999999
Q gi|254780877|r 340 EPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEA 397 (853)
Q Consensus 340 Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA 397 (853)
+|+.+.-..+|+... .-.++.++++.+.+.++-..|=++. =-+.++-||++
T Consensus 152 ~pdD~ll~~~L~k~~----~~r~l~l~~~v~~yll~r~~Rs~~~---l~~~l~~LD~~ 202 (226)
T PRK09087 152 EPDDALLSGVIFKLF----ADRQLYVEPHVVYYLVSRMERSLFA---AQTIVERLDRL 202 (226)
T ss_pred CCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHH
T ss_conf 999899999999998----7576578888999999845889999---99999999999
No 364
>KOG1051 consensus
Probab=97.16 E-value=0.0087 Score=41.59 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=55.8
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 37179999999999999998289963389999998618876689999973999899999999999745
Q gi|254780877|r 4 DKYSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKI 71 (853)
Q Consensus 4 ~kFS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~ 71 (853)
+.++...+.+...+...+...++.+|.+||+.+.+.-.++..+.+++..+|++...++..++...+.+
T Consensus 88 n~l~aalkr~qa~qrr~~~~~~~~~vkvE~~qli~silDdp~vsrv~rEag~~s~~vK~~ve~~~g~~ 155 (898)
T KOG1051 88 NALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQF 155 (898)
T ss_pred HHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 37699999889998734624234134476674631130570799999995589589999886302445
No 365
>KOG0651 consensus
Probab=97.15 E-value=0.0081 Score=41.87 Aligned_cols=158 Identities=24% Similarity=0.327 Sum_probs=99.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCC-------------EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEH
Q ss_conf 85333335789999999633677786-------------68952887407779999999873489984445743788731
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSRRTKNN-------------PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDM 242 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r~~k~n-------------~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~ 242 (853)
.++-+-|=-.-++.+.+++.=.-+|| .+|-|+||.|||-+.+..|..+-- -.+-...
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~----------nfl~v~s 199 (388)
T KOG0651 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV----------NFLKVVS 199 (388)
T ss_pred CHHHHCCHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC----------CEEEEEH
T ss_conf 787717838888998865574024810023457778825687679998645999999986598----------5477447
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCC----------CHHHHHHHHHCCCCEEEEE
Q ss_conf 354217454202454589999998607997699963627730266655433----------5888876531246604899
Q gi|254780877|r 243 GALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAM----------DASNLLKPSLARGELHCIG 312 (853)
Q Consensus 243 ~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~----------Daan~LKP~LarG~l~~Ig 312 (853)
++++. +|-||-..-++.-..++... .++|+|+|||+.+-|---++|+. ..+|=+.-.=.-|...+|.
T Consensus 200 s~lv~--kyiGEsaRlIRemf~yA~~~-~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651 200 SALVD--KYIGESARLIRDMFRYAREV-IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred HHHHH--HHCCCHHHHHHHHHHHHHHH-CCEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEE
T ss_conf 66633--00265788999999778652-7557751012311457733555205999999999987421401206631798
Q ss_pred EECHHHHHHHHHCCHHHHH--CCC-EEECCCCCHHHHHHHHH
Q ss_conf 7448999997300111320--231-11115777678999999
Q gi|254780877|r 313 ATTLDEYRKYIEKDPALAR--RFQ-SLLVGEPTVTDTISILR 351 (853)
Q Consensus 313 aTT~~Eyrk~iEkD~Al~R--RFq-~i~V~Eps~~~t~~iL~ 351 (853)
||--- =-=||||-| |.+ ++.+.=|++..-+.|++
T Consensus 277 atNrp-----dtLdpaLlRpGRldrk~~iPlpne~~r~~I~K 313 (388)
T KOG0651 277 ATNRP-----DTLDPALLRPGRLDRKVEIPLPNEQARLGILK 313 (388)
T ss_pred ECCCC-----CCCCHHHCCCCCCCCEECCCCCCHHHCEEEEE
T ss_conf 53886-----65665542875211100268855442402676
No 366
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.13 E-value=0.01 Score=41.11 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=11.3
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 102202144149899999999840457
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ 698 (853)
..+++|||-.-..|-+..||...++-+
T Consensus 284 gmlfldeigelgadeqamllkaieekr 310 (531)
T COG4650 284 GMLFLDEIGELGADEQAMLLKAIEEKR 310 (531)
T ss_pred CEEEHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 657567433247527889999988712
No 367
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.035 Score=36.66 Aligned_cols=108 Identities=22% Similarity=0.345 Sum_probs=68.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH--CCCCHH--CCCCCCC--CCCHHHH-----
Q ss_conf 2898726786168899999998723776530022447740345320130--477112--0356677--4211322-----
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI--GSPPGY--VGYEEGG--ALTEAVR----- 667 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li--GappGY--vG~~~gg--~Lte~vr----- 667 (853)
-.+||.||.|+||..+|+.+|..|+-....= .+.+..-..-+|+ |+-|-| +.-+++| .-.+.||
T Consensus 25 HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~-----~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~ 99 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRYLLCQQPQG-----HKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-----CCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 4675479999889999999999981899999-----99999997899986689998477534223455999999999999
Q ss_pred --CCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHH
Q ss_conf --156----4102202144149899999999840457887999778303315595485126
Q gi|254780877|r 668 --RHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGA 722 (853)
Q Consensus 668 --~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~ 722 (853)
.+| +-|+++|+.|+.+..--|.||-.|+|=- .||+||++|+-.+
T Consensus 100 ~~~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEPp-----------~~t~~iL~t~~~~ 149 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-----------EKTWFFLACREPA 149 (334)
T ss_pred HHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC-----------CCEEEEEECCCHH
T ss_conf 8436656994799976677759999999998612799-----------8849998669856
No 368
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0014 Score=48.07 Aligned_cols=178 Identities=20% Similarity=0.301 Sum_probs=85.0
Q ss_pred EEEEEECCCCHHHHHHHHHHH-HHH--CCC-CCCCCCCCHHH---HCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCC-C
Q ss_conf 289872678616889999999-872--377-65300224477---403453201304771120356677421132215-6
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLA-RLL--FDD-ENSMIRIDMSE---YMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRH-P 670 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la-~~l--f~~-~~~lir~dMse---y~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~-P 670 (853)
|+|.|+||||||||.+.-.|| .+. +|. .-+||+.|--- .-.=...++++|-| =||=|+. ..|-.++.+. -
T Consensus 177 gV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvP-v~vv~~~-~eL~~aL~~l~~ 254 (404)
T PRK06995 177 GVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP-VHAVKDA-ADLRLALAELRN 254 (404)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE-EEEECCH-HHHHHHHHHHCC
T ss_conf 55898668887637589999999999838983799976875478999999999875955-9995999-999999997089
Q ss_pred CCEEEEHHHHHCCHHHH-HHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 41022021441498999-99999840457887999778303315595485126876403267999999999862885772
Q gi|254780877|r 671 YQVVLFDEIEKAHSDVH-NILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFL 749 (853)
Q Consensus 671 ~sVil~DEiEKah~~v~-~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefl 749 (853)
+-+||.|-.=..|.|-. .-.++.|... +..+ ..+.+|..+... ..+..+-..|+. +
T Consensus 255 ~dlILIDTaGrs~rD~~~~e~l~~l~~~------~~~~---~~~LVLsat~~~------------~dl~~i~~~f~~--~ 311 (404)
T PRK06995 255 KHIVLIDTVGMSQRDRMVSEQIAMLHGA------GAPV---QRLLLLNATSHG------------DTLNEVVQAYRG--P 311 (404)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHC------CCCC---EEEEEECCCCCH------------HHHHHHHHHHCC--C
T ss_conf 9999980999897688899999999735------7885---289997798999------------999999998446--9
Q ss_pred CCCCCEEECCCCCHHHHHH-HHHHHHHHHHHHH----HHCCCEEEECHHHHHHHHHCCCC
Q ss_conf 6668158628899899999-9999999999999----85798999988999999970898
Q gi|254780877|r 750 NRLDEIILFEKLRKEDMAK-IVRIQLGRVLSLI----KERNISMDFDDQVIDWLSCRGYD 804 (853)
Q Consensus 750 nRid~iv~F~~l~~~~~~~-i~~~~l~~l~~~l----~~~~i~l~~~~~~~~~l~~~~~~ 804 (853)
+ + .-++|-.|++..-.. |++..+ +...-+ -.+.+.=.+..+-.++|+.+.+.
T Consensus 312 ~-~-~~~I~TKLDEt~~~G~iln~~~-~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~ 368 (404)
T PRK06995 312 G-L-AGCILTKLDEAASLGGALDTVI-RHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFC 368 (404)
T ss_pred C-C-CEEEEECCCCCCCHHHHHHHHH-HHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHH
T ss_conf 9-9-8399830406797239999999-978985998189958421210898999999862
No 369
>KOG0726 consensus
Probab=97.10 E-value=0.0014 Score=48.01 Aligned_cols=137 Identities=28% Similarity=0.439 Sum_probs=88.2
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 36777866895288740777999999987348998444574378873135421745420245458999999860799769
Q gi|254780877|r 195 SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 195 ~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~i 274 (853)
.-+--..+||-|+||.|||-++...|.. .-..+| |++. +-|| .+|-|+--.-++.++.-+... .+.|
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANq----TSATFl---RvvG---seLi--QkylGdGpklvRqlF~vA~e~-apSI 281 (440)
T KOG0726 215 GIKPPKGVILYGEPGTGKTLLAKAVANQ----TSATFL---RVVG---SELI--QKYLGDGPKLVRELFRVAEEH-APSI 281 (440)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCC----CCHHHH---HHHH---HHHH--HHHHCCCHHHHHHHHHHHHHC-CCCE
T ss_conf 8899970588679997536888877245----521245---5650---8999--987365519999999888752-9826
Q ss_pred EEECCHHHHCCCCCC---CCC--------CCHHHHHHHHHCCCCEEEEEEECHHHHHHHHH-CCHHHHHC---CCEEECC
Q ss_conf 996362773026665---543--------35888876531246604899744899999730-01113202---3111115
Q gi|254780877|r 275 LFIDELHVLVGAGKT---DGA--------MDASNLLKPSLARGELHCIGATTLDEYRKYIE-KDPALARR---FQSLLVG 339 (853)
Q Consensus 275 lfide~h~~~gaG~~---~g~--------~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iE-kD~Al~RR---Fq~i~V~ 339 (853)
.|||||..+ |..+- +|+ +..-|-|--.=+||++++|-||.- || -||||-|- =.+|...
T Consensus 282 vFiDEIdAi-GtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr------ie~LDPaLiRPGrIDrKIef~ 354 (440)
T KOG0726 282 VFIDEIDAI-GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR------IETLDPALIRPGRIDRKIEFP 354 (440)
T ss_pred EEEEHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC------CCCCCHHHCCCCCCCCCCCCC
T ss_conf 986400110-4521347885078999999999874268665677589974165------344677552787543111257
Q ss_pred CCCHHHHHHHHH
Q ss_conf 777678999999
Q gi|254780877|r 340 EPTVTDTISILR 351 (853)
Q Consensus 340 Eps~~~t~~iL~ 351 (853)
-|+..+-..|.+
T Consensus 355 ~pDe~TkkkIf~ 366 (440)
T KOG0726 355 LPDEKTKKKIFQ 366 (440)
T ss_pred CCCHHHHCEEEE
T ss_conf 975563231568
No 370
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.10 E-value=0.0088 Score=41.56 Aligned_cols=164 Identities=24% Similarity=0.336 Sum_probs=112.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCC---------CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC
Q ss_conf 5333335789999999633677---------7866895288740777999999987348998444574378873135421
Q gi|254780877|r 177 LDPVIGRDDEMRRAIQVLSRRT---------KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA 247 (853)
Q Consensus 177 LDPVIGRe~EI~~~~~iL~r~~---------k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 247 (853)
|.||-.|=.++-.++-|=--|. .-.-...|.||.|||++.-.+|+-+..= -.++.-.++++---.||.
T Consensus 27 l~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~l---Gy~r~G~~~~~trddlvG 103 (284)
T TIGR02880 27 LKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRL---GYVRKGHLVSVTRDDLVG 103 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC---CCCCCCCEEEEEHHHHHH
T ss_conf 41588999999999999999987422104883267751689872489999999999871---540036267853001311
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCC-CCCCCHHHHHHHHHC--CCCEEEEEEECHHHHHHHHH
Q ss_conf 745420245458999999860799769996362773026665-543358888765312--46604899744899999730
Q gi|254780877|r 248 GAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKT-DGAMDASNLLKPSLA--RGELHCIGATTLDEYRKYIE 324 (853)
Q Consensus 248 g~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~-~g~~Daan~LKP~La--rG~l~~IgaTT~~Eyrk~iE 324 (853)
.|-|.-.-+-|.+++.. .|. +|||||..-+--...- +-+..|-.+|-..+. |.++-+|-|--.+-...+++
T Consensus 104 --qy~GhtaPktke~lk~a---~GG-vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~~f~~ 177 (284)
T TIGR02880 104 --QYIGHTAPKTKEVLKRA---MGG-VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFE 177 (284)
T ss_pred --HHHCCCCCHHHHHHHHH---CCC-EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf --22125772268999874---287-366422033217764102237999999998723655378887170788888751
Q ss_pred CCHHHHHCCCE-EECCCCCHHHHHHH
Q ss_conf 01113202311-11157776789999
Q gi|254780877|r 325 KDPALARRFQS-LLVGEPTVTDTISI 349 (853)
Q Consensus 325 kD~Al~RRFq~-i~V~Eps~~~t~~i 349 (853)
.+|.|..|... |....-+.++-..|
T Consensus 178 snPG~~sr~a~h~~fPdy~~~~l~~i 203 (284)
T TIGR02880 178 SNPGLSSRVAHHVDFPDYSEEELLAI 203 (284)
T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 17862467764315888776789999
No 371
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.05 E-value=0.0093 Score=41.37 Aligned_cols=164 Identities=23% Similarity=0.250 Sum_probs=89.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCC----CCCHHHCCCEE-EEEEHHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 66895288740777999999987348----99844457437-8873135421-745420245458999999860799769
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIING----DIPESLKGKRL-MALDMGALIA-GAKFRGEFEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~----~vp~~l~~~~i-~~ld~~~l~a-g~~~rg~~e~r~~~i~~~~~~~~~~~i 274 (853)
.+++-|+.|.+|++.+.+|+..+-.+ ++|...-.-++ =+||+..-+. |-. .|+. .|+.+ ++ +-|
T Consensus 27 Gvlirg~~Gtakst~~r~l~~llp~~~p~~~lPl~~tedrl~G~lDi~~tL~~G~~---v~~~---GLLa~---A~-~gv 96 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRP---VAER---GLLAE---AD-GGV 96 (584)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCCHHHHHHCCCE---ECCC---CHHHC---CC-CCE
T ss_conf 18997799957999999999756899984656999974151471259999976898---5257---53330---36-998
Q ss_pred EEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE---------------EEEECHHHHHHHHHCC----HHHHHCCCE
Q ss_conf 996362773026665543358888765312466048---------------9974489999973001----113202311
Q gi|254780877|r 275 LFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHC---------------IGATTLDEYRKYIEKD----PALARRFQS 335 (853)
Q Consensus 275 lfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~---------------IgaTT~~Eyrk~iEkD----~Al~RRFq~ 335 (853)
||+||+.-+= -...++|--+++.|..++ ||.... .|.| ++|.+||--
T Consensus 97 Lyvdevnll~--------d~lv~~Ll~a~~~G~~~vEReGiS~~~parf~LIa~deg------~e~de~~~~~l~dRla~ 162 (584)
T PRK13406 97 LVLAMAERLE--------PGTAARLAAALDAGEVAIERDGLALRMPARFGLVALDEG------AEEDERAPAALADRLAF 162 (584)
T ss_pred EEEECHHHCC--------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCC------CCCCCCHHHHHHHHHCC
T ss_conf 9985147378--------889999999985487400258766356650589994678------87643110788876507
Q ss_pred -EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf -11157776789999999789865414961015899999863332024576747789999999998754102
Q gi|254780877|r 336 -LLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQID 406 (853)
Q Consensus 336 -i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~ 406 (853)
|.++. +..++.. ........+.-+...++.=.+||..+..+-+.|+...+...
T Consensus 163 ~vd~~~------------~~~~~~~------~~~~~~~~i~~Ar~~L~~V~i~d~~~~~l~~~a~~~gv~g~ 216 (584)
T PRK13406 163 HLDLDG------------LALRDTR------EFPIDADDIAAARARLAAVRVPPEAIEALCAAAAALGIASL 216 (584)
T ss_pred CCCHHH------------HHHHHHH------HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 068167------------6666401------11123689999998678666699999999999998399862
No 372
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.043 Score=35.95 Aligned_cols=124 Identities=17% Similarity=0.118 Sum_probs=68.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHC----C--CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHC---
Q ss_conf 78668952887407779999999873489984445----7--43788731354217454202454589999998607---
Q gi|254780877|r 199 KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLK----G--KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSE--- 269 (853)
Q Consensus 199 k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~----~--~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~--- 269 (853)
-+--++.|++|+||++++..+|+.+...+.|..-. + --++.+.. .|...-... +-++.+.+.+..+
T Consensus 19 ~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~p----e~k~~~~~I-d~iR~l~~~i~~~p~~ 93 (290)
T PRK05917 19 PSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFP----EGKGRLHSI-ETPRAIKKQIWIHPYE 93 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECC----CCCCCCCCH-HHHHHHHHHHCCCCCC
T ss_conf 60687689998659999999999985789961688987468998599615----777887867-8999999996418646
Q ss_pred CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC--CEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCC
Q ss_conf 9976999636277302666554335888876531246--6048997448999997300111320231111157
Q gi|254780877|r 270 DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG--ELHCIGATTLDEYRKYIEKDPALARRFQSLLVGE 340 (853)
Q Consensus 270 ~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG--~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~E 340 (853)
.+.-|..||+.|.+ +..|||-|--.|..- ..-+|=.|+.-+ +- =+.+-.|-|+|.+.-
T Consensus 94 g~~KV~IId~Ad~M--------n~~AaNALLKtLEEPP~~tvfILit~~~~--~l---LpTI~SRCQ~I~i~~ 153 (290)
T PRK05917 94 ANYKIYIIHEADRM--------TLDAISAFLKVLEDPPKHSVIILTSAKPQ--RL---PPTIRSRSLSIHIPG 153 (290)
T ss_pred CCCEEEEECCHHHH--------CHHHHHHHHHHHCCCCCCEEEEEEECCHH--HC---CHHHHHCCCEEECCC
T ss_conf 88269997567763--------89999999997347987859999869925--48---237763351167776
No 373
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.0022 Score=46.43 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC--CCCCCH---HHHCCCCCCCHHHCC
Q ss_conf 999999999987410123656651289872678616889999999872377653--002244---774034532013047
Q gi|254780877|r 575 AAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENS--MIRIDM---SEYMEKHSVSRLIGS 649 (853)
Q Consensus 575 ~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~--lir~dM---sey~e~~~vs~LiGa 649 (853)
+.++.+.+.+...........++.-+++|+||+|||||.++--||..+-....+ ++..|- .-+-+=-..++.+|-
T Consensus 52 ~vi~~l~~~l~~~~~~~~~~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v 131 (270)
T PRK06731 52 EVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGF 131 (270)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999998750766546799818999888989889999999999986799089998388888899999999998199
Q ss_pred CCHHCCCCCCCCCCHHHH----CCCCCEEEEHHHHHCCHH
Q ss_conf 711203566774211322----156410220214414989
Q gi|254780877|r 650 PPGYVGYEEGGALTEAVR----RHPYQVVLFDEIEKAHSD 685 (853)
Q Consensus 650 ppGYvG~~~gg~Lte~vr----~~P~sVil~DEiEKah~~ 685 (853)
| -|+.+++ ..+..++. ..-+-|||.|--=.-|.+
T Consensus 132 ~-~~~~~~~-~~~~~~~~~~~~~~~~DvilIDTAGR~~~d 169 (270)
T PRK06731 132 E-VIAVRDE-AAMTRALTYFKEEARVDYILIDTAGKNYRA 169 (270)
T ss_pred C-EECCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 5-3545887-899999999999769999999799987146
No 374
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.045 Score=35.84 Aligned_cols=174 Identities=17% Similarity=0.269 Sum_probs=102.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC-------------CCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CCH---------H
Q ss_conf 8533333578999999963367-------------778668952887407779999999873489--984---------4
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSRR-------------TKNNPVLIGDPGVGKTAIIEGLASRIINGD--IPE---------S 231 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r~-------------~k~n~~lvGe~GvGKtaive~la~~i~~~~--vp~---------~ 231 (853)
-+|-|||-+.-++.+-.-+..- --.--+..|++|+|||++...||+.+.-.+ .++ .
T Consensus 3 ~f~~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i 82 (395)
T PRK07940 3 VWDRLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTV 82 (395)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 70131592999999999998363434433334687660376368998788999999999966999999999878789998
Q ss_pred HCCC--EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CC-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 4574--3788731354217454202454589999998607--99-76999636277302666554335888876531246
Q gi|254780877|r 232 LKGK--RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSE--DG-EIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG 306 (853)
Q Consensus 232 l~~~--~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~--~~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG 306 (853)
..+. -+..+.. .|++.+ =+-++.+++++... .| .-|..||+.|++- .-|+|-|--.|..-
T Consensus 83 ~~g~hpDv~~i~p----~~~~i~---id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~--------~~a~NalLKtLEEP 147 (395)
T PRK07940 83 LAGTHPDVRVVVP----EGLSIG---VDEVREIVQIAARRPTTGRWRIVVIEDADRLT--------ERAANALLKAVEEP 147 (395)
T ss_pred HCCCCCCEEEEEC----CCCCCC---HHHHHHHHHHHHHCCCCCCCEEEEEECHHHHC--------HHHHHHHHHHHCCC
T ss_conf 7689987189826----877688---99999999998527303795599980778748--------99999999852178
Q ss_pred C---EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 6---048997448999997300111320231111157776789999999789865414961015899999863332
Q gi|254780877|r 307 E---LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNR 379 (853)
Q Consensus 307 ~---l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~r 379 (853)
- +-+..+|.++..= +-+-.|-|.|....|+.++....|. ..+|| +.+....++.+|.-
T Consensus 148 p~~~~fiL~t~~~~~ll------pTI~SRcq~~~f~~~~~~~i~~~L~-------~~~gi--~~~~A~~aA~~s~G 208 (395)
T PRK07940 148 PPRTVWLLCAPSVEDVL------PTIRSRCRHVALRTPSVEAVADVLV-------RRDGV--DPETAQWAARASGG 208 (395)
T ss_pred CCCEEEEEEECCHHHHH------HHHHHHHEECCCCCCCHHHHHHHHH-------HCCCC--CHHHHHHHHHHHCC
T ss_conf 88869998739978744------6887440002379999999999998-------70199--98999999998089
No 375
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.01 E-value=0.0018 Score=47.24 Aligned_cols=179 Identities=22% Similarity=0.280 Sum_probs=94.7
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCC----CE-EEECCCCCCHHHHHHHHHH----HHHCCCCCHHHCCCEEEEEEHHHHHC-
Q ss_conf 33333578999999963367778----66-8952887407779999999----87348998444574378873135421-
Q gi|254780877|r 178 DPVIGRDDEMRRAIQVLSRRTKN----NP-VLIGDPGVGKTAIIEGLAS----RIINGDIPESLKGKRLMALDMGALIA- 247 (853)
Q Consensus 178 DPVIGRe~EI~~~~~iL~r~~k~----n~-~lvGe~GvGKtaive~la~----~i~~~~vp~~l~~~~i~~ld~~~l~a- 247 (853)
+-+-|||+|.+++-.-+--.-|+ +. -+-|-||.||||-|....+ ...+|++|+ ...++++-..|..
T Consensus 267 e~lpcRe~E~~~I~~Fie~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~----F~fVEINGMkLt~P 342 (650)
T PTZ00112 267 EYILGREKEAKEIRTFLETGIKQGGTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPW----FNLFEINGVNLVHP 342 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC----CEEEEECCEECCCH
T ss_conf 44777078999999999864116886656999789999800369999999999997089998----15999736377987
Q ss_pred ------------CCCCCCHHHHHHHHHHHHH-HHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHH-HHHHCCCCEEEEE-
Q ss_conf ------------7454202454589999998-607997699963627730266655433588887-6531246604899-
Q gi|254780877|r 248 ------------GAKFRGEFEERLKSLLCEI-RSEDGEIILFIDELHVLVGAGKTDGAMDASNLL-KPSLARGELHCIG- 312 (853)
Q Consensus 248 ------------g~~~rg~~e~r~~~i~~~~-~~~~~~~ilfide~h~~~gaG~~~g~~Daan~L-KP~LarG~l~~Ig- 312 (853)
|-+... ...- -.+++.. ......+||.+||+-.|+- ..+. - .=|++ =|.+....|-+||
T Consensus 343 ~qaY~~L~e~Ltg~k~~~-~~~A-~~lL~k~F~~~r~p~VlLvDELD~LvT-kkQ~-V--lYNLFdWPT~~~SkLIVIaI 416 (650)
T PTZ00112 343 NAAYRVFYKKLFNKKPPN-ALNS-YKELDKLFNNNRTPSILIVDEADYIVT-KTQK-V--LFTLFDWPTKKNSKLILIII 416 (650)
T ss_pred HHHHHHHHHHHHCCCCCC-HHHH-HHHHHHHHCCCCCCEEEEECHHHHHHH-CCCC-E--EEECCCCCCCCCCEEEEEEE
T ss_conf 889999999984898886-7899-999999826899718999715777763-6774-5--77736688988870799998
Q ss_pred EECHHHHHHHHHCCHHHHHC--CCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 74489999973001113202--311111577767899999997898654149610158999998
Q gi|254780877|r 313 ATTLDEYRKYIEKDPALARR--FQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAA 374 (853)
Q Consensus 313 aTT~~Eyrk~iEkD~Al~RR--Fq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av 374 (853)
|-|.|==-+.. +-...| ++++.-.+=+.++-.+|+.. |++.. --+.++||..|.
T Consensus 417 ANTMDLPERL~---~RVsSRLGltRltF~PYt~~QL~eII~s---RL~~~--~~f~~dAIQl~A 472 (650)
T PTZ00112 417 SNTMDLPYKMK---PSCRSRLAFGRLVFSPYKYQQIEKVIKE---RLENC--EIIDHTALQLCA 472 (650)
T ss_pred EECCCCCHHHH---HHHHHHCCCCEECCCCCCHHHHHHHHHH---HHCCC--CCCCHHHHHHHH
T ss_conf 50678606566---6655522885004399899999999999---86267--778878999998
No 376
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00096 Score=49.39 Aligned_cols=143 Identities=28% Similarity=0.417 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH----------------HHHCCCCCHH--HCCCEE---
Q ss_conf 3333578999999963367778668952887407779999999----------------8734899844--457437---
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLAS----------------RIINGDIPES--LKGKRL--- 237 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~----------------~i~~~~vp~~--l~~~~i--- 237 (853)
-|+| .++-+|.++|=+--.+ |-+++|+||.|||-++..+.. ..+.++-... +...|=
T Consensus 180 DV~G-Q~~AKrAleiAAAGgH-nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~~~~~~rPFr~ 257 (490)
T COG0606 180 DVKG-QEQAKRALEIAAAGGH-NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRA 257 (490)
T ss_pred HHCC-CHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCC
T ss_conf 6438-4999999999984388-6787569988656764231025999870888999888763543246786411078768
Q ss_pred --EEEEHHHHHCCC-CCC-CHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE
Q ss_conf --887313542174-542-0245458999999860799769996362773026665543358888765312466048997
Q gi|254780877|r 238 --MALDMGALIAGA-KFR-GEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGA 313 (853)
Q Consensus 238 --~~ld~~~l~ag~-~~r-g~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~Iga 313 (853)
-+..+.+|+.|- .|| | |+.-+. |=+||+||+--. .-++-|-|.-.|..|++.+--+
T Consensus 258 PHHsaS~~aLvGGG~~p~PG-----------eIsLAH-~GVLFLDElpef--------~~~iLe~LR~PLE~g~i~IsRa 317 (490)
T COG0606 258 PHHSASLAALVGGGGVPRPG-----------EISLAH-NGVLFLDELPEF--------KRSILEALREPLENGKIIISRA 317 (490)
T ss_pred CCCCCHHHHHHCCCCCCCCC-----------CEEEEC-CCEEEEECCCHH--------HHHHHHHHHCCCCCCCEEEEEC
T ss_conf 87402288973789988987-----------354303-877886144210--------5999999737412581799975
Q ss_pred ECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 44899999730011132023111115777678999999978986541496
Q gi|254780877|r 314 TTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKV 363 (853)
Q Consensus 314 TT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V 363 (853)
.+.-+|. -|||.|----|+. --.|+.+|+.
T Consensus 318 ~~~v~yp----------a~Fqlv~AmNpcp----------cG~~~~~~~~ 347 (490)
T COG0606 318 GSKVTYP----------ARFQLVAAMNPCP----------CGNLGAPLRR 347 (490)
T ss_pred CCEEEEE----------EEEEEHHHCCCCC----------CCCCCCCCCC
T ss_conf 8716872----------1267752239997----------6478887777
No 377
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.01 E-value=0.0012 Score=48.71 Aligned_cols=125 Identities=19% Similarity=0.297 Sum_probs=58.2
Q ss_pred EEEEECCHHHHC-C----------------CCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCC-
Q ss_conf 699963627730-2----------------6665543358888765312466048997448999997300111320231-
Q gi|254780877|r 273 IILFIDELHVLV-G----------------AGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQ- 334 (853)
Q Consensus 273 ~ilfide~h~~~-g----------------aG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq- 334 (853)
=+|||||+.+|= + .|.++-| .+.+++|-=---++++|++++++-|+.. .+||-.|.+
T Consensus 228 GvL~IDei~~L~~~~q~~Ll~alq~~k~~I~g~~e~S--sgA~v~tepvP~Df~lV~aGn~d~~~~m---~palrsri~g 302 (637)
T PRK13765 228 GVLFIDEINTLRLESQQSLLTAMQEKKYPITGQSERS--SGAMVRTEPVPCDFIMVAAGNLDAIENM---HPALRSRIRG 302 (637)
T ss_pred CEEEEEHHHHCCHHHHHHHHHHHHCCCEECCCCCCCC--CCCCCCCCCCCEEEEEEEECCHHHHHHC---CHHHHHHHHC
T ss_conf 5699844564798899999999965915323688666--7762578986613699995372766643---9988865104
Q ss_pred ---EEECC---CCCHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCC-CCH---HHHHHHHHHHHHHHH
Q ss_conf ---11115---7776789999999789865414961-01589999986333202457-674---778999999999875
Q gi|254780877|r 335 ---SLLVG---EPTVTDTISILRGLKERYEQHHKVR-ISDSALVSAAVLSNRYITDR-FLP---DKAIDLMDEASARVR 402 (853)
Q Consensus 335 ---~i~V~---Eps~~~t~~iL~gl~~~yE~~H~V~-i~d~al~~av~ls~rYi~~r-~lP---DKAIDllDeA~A~~~ 402 (853)
.|..+ +-+.+....++|=+....++.-.+- ++.+|+...+..+.|.=.++ +|- -.-.+|+-+|+..++
T Consensus 303 ~gyev~~~~~m~dt~enr~k~arfiaqev~~dg~iPhfdr~AVaeII~eA~R~AG~k~kLTLrLReL~~LIReAgdiA~ 381 (637)
T PRK13765 303 YGYEVYMNDTMEDTPENRKKLVRFVAQEVKRDGKIPHFDREAVEEIIREARRRAGRKGHLTLKLRDLGGLVRVAGDIAR 381 (637)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7749982356778788999999999999974388899998999999999997405456630528988749999889999
No 378
>PRK08116 hypothetical protein; Validated
Probab=97.01 E-value=0.0029 Score=45.45 Aligned_cols=70 Identities=26% Similarity=0.498 Sum_probs=50.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 66895288740777999999987348998444574378873135421745--4202454589999998607997699963
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAK--FRGEFEERLKSLLCEIRSEDGEIILFID 278 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~--~rg~~e~r~~~i~~~~~~~~~~~ilfid 278 (853)
.-+|.|+||+|||-++-.+|..+.+. ++.++-.++..|+.--+ |...-.+....+++.+...+ +|+||
T Consensus 110 GLll~G~~GtGKThLa~aIa~~l~~~-------g~~V~~~~~~~ll~~lk~~~~~~~~~~~~e~l~~l~~~d---LLIiD 179 (262)
T PRK08116 110 GLLLWGSPGNGKTYLAAAIANELIEK-------GVPVVFVNVPELLNRIKSTYNSEGKEDENEIIRALDNAD---LLILD 179 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC---EEEEE
T ss_conf 18998989998999999999999987-------993999889999999999986356101999999861299---89983
Q ss_pred CH
Q ss_conf 62
Q gi|254780877|r 279 EL 280 (853)
Q Consensus 279 e~ 280 (853)
|+
T Consensus 180 Dl 181 (262)
T PRK08116 180 DL 181 (262)
T ss_pred HH
T ss_conf 22
No 379
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.99 E-value=0.015 Score=39.58 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH-----HHCCCCCCCCCCCHHHHCCCCC----CCH
Q ss_conf 9999999999874101236566512898726786168899999998-----7237765300224477403453----201
Q gi|254780877|r 575 AAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLAR-----LLFDDENSMIRIDMSEYMEKHS----VSR 645 (853)
Q Consensus 575 ~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~-----~lf~~~~~lir~dMsey~e~~~----vs~ 645 (853)
+-++.+...+.. .+.-+++.--+|+.|+|||.||+.+-+ ..|+ ....+ .+|.-..... +.+
T Consensus 3 ~~~~~i~~~L~~-------~~~~~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~-~~~wv--~vs~~~~~~~i~~~i~~ 72 (285)
T pfam00931 3 DMIEALIEKLLE-------MSENLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFD-SVAWV--VVSKTYTEFRLQKDILQ 72 (285)
T ss_pred HHHHHHHHHHHC-------CCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHCCC-EEEEE--EECCCCCHHHHHHHHHH
T ss_conf 899999999864-------898953999889995639999999971655650598-38999--97976668999999999
Q ss_pred HHCCCCHHCCCCC----CCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCC
Q ss_conf 3047711203566----7742113221564102202144149899999999840457887999778303315595485
Q gi|254780877|r 646 LIGSPPGYVGYEE----GGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSN 719 (853)
Q Consensus 646 LiGappGYvG~~~----gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN 719 (853)
-++...+=..... -..|.+.++.+. ..|+||.+. +...|+.+...+.++ +. .+-||+||.
T Consensus 73 ~l~~~~~~~~~~~~~~l~~~l~~~L~~kr-~LiVLDDVw--~~~~~~~l~~~~~~~----~~-------gSrIIvTTR 136 (285)
T pfam00931 73 ELGLDDSDWVEKNESELAVKIKEALLRKR-FLLVLDDVW--EKNDWDKIGVPFPDG----EN-------GSRVIVTTR 136 (285)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCC--CHHHHHHHHCCCCCC----CC-------CCEEEEECC
T ss_conf 85666545555789999999999972796-699963888--789999973457578----99-------827998557
No 380
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.009 Score=41.48 Aligned_cols=143 Identities=19% Similarity=0.277 Sum_probs=77.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHH
Q ss_conf 98726786168899999998723776530022447740345320130477112035667742113221564102202144
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIE 680 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiE 680 (853)
.+.+|++|||||..|+.|+ .| | +-.+.|++|. .-.+-|-||+++ | -+-+|=+|..-
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~l-g----~~~i~l~el~---------~e~~~~~~~de~-------r--~s~~vD~d~~~ 58 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-EL-G----YKVIELNELA---------KENGLYTEYDEL-------R--KSVIVDVDKLR 58 (180)
T ss_pred EEEECCCCCCHHHHHHHHH-HH-C----CCEEEHHHHH---------HHCCCEECCCCC-------C--CEEEEEHHHHH
T ss_conf 7993799986687999999-82-9----8466199999---------866971143776-------6--15886679999
Q ss_pred HCCHHHHHHHHHHHHCCEEECCCC-CEEECCCCEEEECCCHHH--HHHHC---CHHHHHHHHHHHHHHHCCHHHHCCCCC
Q ss_conf 149899999999840457887999-778303315595485126--87640---326799999999986288577266681
Q gi|254780877|r 681 KAHSDVHNILLQVLDDGRLTDSQG-RTVDFRNTLIIMTSNLGA--EYLIE---DGDSVHDKVMGIVRSAFKPEFLNRLDE 754 (853)
Q Consensus 681 Kah~~v~~~llqild~G~ltd~~G-~~v~f~n~iii~TsN~G~--~~~~~---~~~~~~~~~~~~l~~~f~peflnRid~ 754 (853)
+.-... + ...+.+.|++= ..+.--+.+|++..|--. +.+.. +.+.+.+.+..++...+.-|-+-+.+.
T Consensus 59 ~~le~~---~---~~~~~Ivd~H~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~ 132 (180)
T COG1936 59 KRLEEL---L---REGSGIVDSHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEA 132 (180)
T ss_pred HHHHHH---H---CCCCEEEECHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 888887---5---0588476126662178788899971898999999987699878988779999999999999973476
Q ss_pred EEECCCCCHHHHHHHHHHHH
Q ss_conf 58628899899999999999
Q gi|254780877|r 755 IILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 755 iv~F~~l~~~~~~~i~~~~l 774 (853)
++.|+. +......++..-+
T Consensus 133 v~evdt-t~~s~ee~~~~i~ 151 (180)
T COG1936 133 VIEVDT-TNRSPEEVAEEII 151 (180)
T ss_pred EEEEEC-CCCCHHHHHHHHH
T ss_conf 499978-9999999999999
No 381
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.98 E-value=0.02 Score=38.73 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=72.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHHHCCCCEE
Q ss_conf 7866895288740777999999987348--9984445743788731354217454202--45458999999860799769
Q gi|254780877|r 199 KNNPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIAGAKFRGE--FEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 199 k~n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--~e~r~~~i~~~~~~~~~~~i 274 (853)
++|.+|||-||+|||+|-.-||+++-.. |....+.. -+...+..+.+- .|| |-+.=..++..+.. + +.
T Consensus 2 ~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~--~~g~sI~eif~~---~Ge~~FR~~E~~~l~~l~~-~-~~- 73 (172)
T PRK03731 2 TQPLFLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQS--TLQMTVAEIVER---EGWAGFRARESAALEAVTA-P-ST- 73 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHH--HHCCCHHHHHHH---HCHHHHHHHHHHHHHHHCC-C-CE-
T ss_conf 99889988999988999999999859997978699998--839899999998---3989999999999998427-8-82-
Q ss_pred EEECCHHHHCCCCCCC-CCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 9963627730266655-433588887653124660489974489999973001113202311111577767899999997
Q gi|254780877|r 275 LFIDELHVLVGAGKTD-GAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGL 353 (853)
Q Consensus 275 lfide~h~~~gaG~~~-g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl 353 (853)
+|..|++- -.-+.-.+|+ ..|-+=. =-++++.--+.+..|+--.. -|..-..|..++-.+++..-
T Consensus 74 --------VIstGGG~v~~~~n~~~L~---~~g~vv~-L~~~~~~l~~Rl~~~~~~~~--RPll~~~~~~~~i~~l~~~R 139 (172)
T PRK03731 74 --------VVATGGGIILTEENRAFMR---NNGIVIY-LCAPVSVLANRLEADPEEDQ--RPTLTGKPLSEEVAEVLAER 139 (172)
T ss_pred --------EEEECCCCCCCHHHHHHHH---HCCEEEE-EECCHHHHHHHHHCCCCCCC--CCCCCCCCHHHHHHHHHHHH
T ss_conf --------8980786426899999999---6899999-97999999999813877898--98788998799999999999
Q ss_pred HHHHHHHCCCCCCH
Q ss_conf 89865414961015
Q gi|254780877|r 354 KERYEQHHKVRISD 367 (853)
Q Consensus 354 ~~~yE~~H~V~i~d 367 (853)
.+.|++...+.+++
T Consensus 140 ~~~Y~~~a~~ii~~ 153 (172)
T PRK03731 140 DALYREVAHHIIDA 153 (172)
T ss_pred HHHHHHHCCEEECC
T ss_conf 99999848998879
No 382
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.98 E-value=0.0072 Score=42.28 Aligned_cols=141 Identities=21% Similarity=0.268 Sum_probs=78.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHCCC--CCCCHHHCCCCHHCCCCCCCCCCH---HHHCC
Q ss_conf 89872678616889999999872-----377653002244774034--532013047711203566774211---32215
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLL-----FDDENSMIRIDMSEYMEK--HSVSRLIGSPPGYVGYEEGGALTE---AVRRH 669 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~l-----f~~~~~lir~dMsey~e~--~~vs~LiGappGYvG~~~gg~Lte---~vr~~ 669 (853)
..+..|++|+|||.+++.+|... +.+.+-.+-+.+.++... -++.-+|-..-. +.+...++ .+..+
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~----~~~~~~~~~~~~~~~~ 77 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWP----EPAAPVSEVWAVILEL 77 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCC----CCCCCHHHHHHHHHHC
T ss_conf 899982798989999999999998698436972899999567077766899999998767----7457637899999839
Q ss_pred C-CCEEEEHHHHHCCH---------HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHH
Q ss_conf 6-41022021441498---------9999999984045788799977830331559548512687640326799999999
Q gi|254780877|r 670 P-YQVVLFDEIEKAHS---------DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGI 739 (853)
Q Consensus 670 P-~sVil~DEiEKah~---------~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~ 739 (853)
| ..+++||-+|.... .|..++..++. .--|.+|-++.||--.+- ..
T Consensus 78 ~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~----------~~~lp~~~vliTsRp~~~--------------~~ 133 (165)
T pfam05729 78 PERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLR----------KKLLPGASLLLTSRPDAL--------------RD 133 (165)
T ss_pred CCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHH----------HCCCCCCEEEEEECCCHH--------------HH
T ss_conf 772899964845514443564445779999999984----------152788649999680379--------------88
Q ss_pred HHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 98628857726668158628899899999999999
Q gi|254780877|r 740 VRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 740 l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
+...+.+ +..+.-..++.+++...+.+.+
T Consensus 134 l~~~~~~------~~~~ei~GFs~~~~~~yi~~~F 162 (165)
T pfam05729 134 LRRGLEE------PRYLEVLGFSEEDRKQYVRKYF 162 (165)
T ss_pred HHHHCCC------CCEEEECCCCHHHHHHHHHHHC
T ss_conf 5776488------7189988999999999999867
No 383
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.96 E-value=0.0015 Score=47.81 Aligned_cols=90 Identities=24% Similarity=0.375 Sum_probs=58.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH-C-CCCCCCCCC-CHHHHCCC--CCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEE
Q ss_conf 89872678616889999999872-3-776530022-44774034--5320130477112035667742113221564102
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLL-F-DDENSMIRI-DMSEYMEK--HSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVV 674 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~l-f-~~~~~lir~-dMsey~e~--~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVi 674 (853)
+++.+|+||.|||.+.++|...+ + ....+++.+ |-.|.+-. +.+. +.. .+.|.+.+ .|-.++|.+|.-|
T Consensus 151 nilI~G~TgsGKTTll~all~~i~~~~p~eRivtIED~~EL~~~~~n~v~-~~~--~~~vt~~~--Ll~~aLR~rPDRI- 224 (320)
T PRK13894 151 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQ-YHT--SIDVNMTA--LLKTTLRMRPDRI- 224 (320)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHCCCCCCEEE-EEC--CCCCCHHH--HHHHHHCCCCCEE-
T ss_conf 58998588865689999998632026952017752587880787777357-644--78868999--9999736799858-
Q ss_pred EEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 202144149899999999840457
Q gi|254780877|r 675 LFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 675 l~DEiEKah~~v~~~llqild~G~ 698 (853)
++-|+- .+++++ ||+.+..|+
T Consensus 225 ivGEvR--g~Ea~~-~l~A~nTGH 245 (320)
T PRK13894 225 LVGEVR--GPEALD-LLMAWNTGH 245 (320)
T ss_pred EECCCC--CHHHHH-HHHHHHCCC
T ss_conf 766547--489999-999996699
No 384
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.95 E-value=0.0012 Score=48.46 Aligned_cols=90 Identities=21% Similarity=0.402 Sum_probs=59.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHC---CCCCCCHHHCCCCHHCCCCCCC-----CCCHHHHCCC
Q ss_conf 898726786168899999998723776530022-447740---3453201304771120356677-----4211322156
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYM---EKHSVSRLIGSPPGYVGYEEGG-----ALTEAVRRHP 670 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~---e~~~vs~LiGappGYvG~~~gg-----~Lte~vr~~P 670 (853)
+++++|+||+|||.++++|+.++=.++ .++.+ |-.|.. .++.| .|.-.++| -+.++ .|..++|.+|
T Consensus 162 NilI~G~TgSGKTTll~aL~~~ip~~e-RiitIEDt~EL~l~~~pn~v-~l~~~~~~---~g~~~vt~~~Ll~~aLR~rP 236 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSSHPNRV-HLLASKGG---QGRAKVTTQDLIEACLRLRP 236 (332)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCC-CEEEECCCHHHCCCCCCCEE-EEEECCCC---CCCCEECHHHHHHHHHCCCC
T ss_conf 199988889889999999983589535-35663140663566688889-99971688---88660869999999756899
Q ss_pred CCEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 4102202144149899999999840457
Q gi|254780877|r 671 YQVVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 671 ~sVil~DEiEKah~~v~~~llqild~G~ 698 (853)
.- |++-|+= .++.|+ |||.+..|+
T Consensus 237 DR-IivGEvR--G~EA~~-~l~A~nTGH 260 (332)
T PRK13900 237 DR-IIVGELR--GAEAFS-FLRAINTGH 260 (332)
T ss_pred CE-EEECCCC--HHHHHH-HHHHHHCCC
T ss_conf 75-8445557--199999-999997699
No 385
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.002 Score=46.76 Aligned_cols=148 Identities=30% Similarity=0.451 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH-HHHHHHH--CCCCCHHHCCCEEEEEEHHHHHC---CC---
Q ss_conf 333357899999996336777866895288740777999-9999873--48998444574378873135421---74---
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIE-GLASRII--NGDIPESLKGKRLMALDMGALIA---GA--- 249 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive-~la~~i~--~~~vp~~l~~~~i~~ld~~~l~a---g~--- 249 (853)
||....+||-..+ .. ..-++++||+|.|||+-+- -|-.... .|.+ -.++=.||=..+++.=+| |.
T Consensus 50 Pv~~~~~~i~~ai---~~--~~vvii~getGsGKTTqlP~~lle~g~~~~g~I-~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 50 PVTAVRDEILKAI---EQ--NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKI-GCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred CCHHHHHHHHHHH---HH--CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE-EECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8188899999999---86--978998679988758788999996001668759-96584389999999999998389867
Q ss_pred ---CCCCHHHHHH-----------HHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCH-HHHHHHHHC--CCCEE
Q ss_conf ---5420245458-----------9999998607---99769996362773026665543358-888765312--46604
Q gi|254780877|r 250 ---KFRGEFEERL-----------KSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDA-SNLLKPSLA--RGELH 309 (853)
Q Consensus 250 ---~~rg~~e~r~-----------~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Da-an~LKP~La--rG~l~ 309 (853)
.|+=-||.+. .-++.|+... .+--++-|||+|-= +- ..|. --+||-.++ |.+++
T Consensus 124 ~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-----Sl-~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 124 ETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-----SL-NTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred CEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHH-----HH-HHHHHHHHHHHHHHHCCCCCE
T ss_conf 654379996226787714689514799999843802045877997013355-----68-889999999999864688705
Q ss_pred EEE--EE-CHHHHHHHHHCCHHH--HHCCCEEEC
Q ss_conf 899--74-489999973001113--202311111
Q gi|254780877|r 310 CIG--AT-TLDEYRKYIEKDPAL--ARRFQSLLV 338 (853)
Q Consensus 310 ~Ig--aT-T~~Eyrk~iEkD~Al--~RRFq~i~V 338 (853)
+|- || -.+.|.+||..-|.+ +-|=-+|.+
T Consensus 198 iIimSATld~~rfs~~f~~apvi~i~GR~fPVei 231 (845)
T COG1643 198 LIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEI 231 (845)
T ss_pred EEEEECCCCHHHHHHHCCCCCEEEECCCCCCEEE
T ss_conf 9997253588999976289987875588664478
No 386
>PRK10436 hypothetical protein; Provisional
Probab=96.93 E-value=0.00078 Score=50.12 Aligned_cols=100 Identities=25% Similarity=0.355 Sum_probs=66.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCE
Q ss_conf 66512898726786168899999998723776530022-44774034532013047711203566774211322156410
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQV 673 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sV 673 (853)
.+|-|.+|++||||.|||.+--++-+.+-..+.+++++ |=-||.-+.-..-=+..- .|.+-...|...+|+.| -|
T Consensus 212 ~~p~GliLvtGPTGSGKTTTLya~L~~l~~~~~~I~TiEDPVE~~l~gi~Q~~vn~~---~g~tfa~~lrs~LRqDP-DV 287 (461)
T PRK10436 212 QQPQGLVLVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPR---AGLTFQRVLRALLRQDP-DV 287 (461)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECCC---CCHHHHHHHHHHHCCCC-CE
T ss_conf 389977999789999569999999974346771699960774355467545231322---13139999999874699-99
Q ss_pred EEEHHHHHCCHHHHHHHHHHHHCCEEE
Q ss_conf 220214414989999999984045788
Q gi|254780877|r 674 VLFDEIEKAHSDVHNILLQVLDDGRLT 700 (853)
Q Consensus 674 il~DEiEKah~~v~~~llqild~G~lt 700 (853)
|++.||-- .+...+-++.--.|+|.
T Consensus 288 ImvGEIRD--~eTA~~Ai~AAlTGHLV 312 (461)
T PRK10436 288 IMVGEIRD--GETAEIAIKAAQTGHLV 312 (461)
T ss_pred EEECCCCC--HHHHHHHHHHHHHCCEE
T ss_conf 98657788--99999999999719848
No 387
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.92 E-value=0.0012 Score=48.47 Aligned_cols=94 Identities=28% Similarity=0.446 Sum_probs=57.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHC--CCCCCCHHHCCCCHHCCCC---CCCCCCHHHHCCCCC
Q ss_conf 2898726786168899999998723776530022-447740--3453201304771120356---677421132215641
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYM--EKHSVSRLIGSPPGYVGYE---EGGALTEAVRRHPYQ 672 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~--e~~~vs~LiGappGYvG~~---~gg~Lte~vr~~P~s 672 (853)
+++|++||||.|||.+.++|..++-.++ .++.+ |-.|+. .++.++-.. .++.+-|.. -.-.+-.++|.+| .
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~~~~-rivtiEd~~El~l~~~~~v~l~~-~~~~~~~~~~~~~~~li~~aLR~~p-d 102 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPHPNWVRLVT-RPGNVEGSGEVTMADLLRSALRMRP-D 102 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCC-CEEEECCCHHHCCCCCCEEEEEE-ECCCCCCCCEECHHHHHHHHCCCCC-C
T ss_conf 9899989999989999999996133456-45984153540477775688886-0464578650349999887366899-7
Q ss_pred EEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 02202144149899999999840457
Q gi|254780877|r 673 VVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 673 Vil~DEiEKah~~v~~~llqild~G~ 698 (853)
.|++-|+-- ++.+. +++.+..|+
T Consensus 103 ~iivGEiR~--~Ea~~-~l~a~~tGh 125 (186)
T cd01130 103 RIIVGEVRG--GEALD-LLQAMNTGH 125 (186)
T ss_pred EEECCCCCC--HHHHH-HHHHHHCCC
T ss_conf 373175683--99999-999997489
No 388
>KOG0732 consensus
Probab=96.91 E-value=0.0057 Score=43.12 Aligned_cols=88 Identities=23% Similarity=0.373 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 57899999996336777866895288740777999999987348998444574378873135421745420245458999
Q gi|254780877|r 183 RDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSL 262 (853)
Q Consensus 183 Re~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i 262 (853)
|+.|..-.+..+||.. -++-|..|+|-+.+--.+-. .|.+-.+.++++.+|++-... ++.++-+..+
T Consensus 579 ~~~e~~~~i~lic~~~---lli~~~~~~g~~~lg~aIlh---------~~~~~~v~s~~issll~d~~~-~~~~~~iv~i 645 (1080)
T KOG0732 579 RSFESNFAIRLICRPR---LLINGGKGSGQDYLGPAILH---------RLEGLPVQSLDISSLLSDEGT-EDLEEEIVHI 645 (1080)
T ss_pred HHHHCCCCHHHHCCCH---HHCCCCCCCCCCCCCHHHHH---------HHHCCCHHHHHHHHHHHCCCC-CCHHHHHHHH
T ss_conf 7541110123432708---76079866565755089999---------885140577778898755665-2478999999
Q ss_pred HHHHHHCCCCEEEEECCHHHHC
Q ss_conf 9998607997699963627730
Q gi|254780877|r 263 LCEIRSEDGEIILFIDELHVLV 284 (853)
Q Consensus 263 ~~~~~~~~~~~ilfide~h~~~ 284 (853)
.-|... .++.|+||..+|-+.
T Consensus 646 ~~eaR~-~~psi~~ip~~d~w~ 666 (1080)
T KOG0732 646 FMEARK-TTPSIVFIPNVDEWA 666 (1080)
T ss_pred HHHHHC-CCCCEEECCCHHHHH
T ss_conf 998731-588334235325565
No 389
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=96.90 E-value=0.038 Score=36.39 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=99.4
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCCCCCCCC-----------EEEEEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 23554776745948999999999987410-123656651-----------289872678616889999999872377653
Q gi|254780877|r 561 RIETEISKSVIGQSAAVESVSNALRRFRA-GLQDPQRPM-----------GSFMFLGPTGVGKTELVKSLARLLFDDENS 628 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~v~~~~~~~~~-gl~~~~~p~-----------~~flf~GptGvGKTelak~la~~lf~~~~~ 628 (853)
.|...+.-.|+|.+..-+.+.-.+--... .......|- -..|++|-+|++|+.|-+.+++.- .+.
T Consensus 444 ~L~~SiAPSI~~~~dvKkgillqLFGg~~k~~~~~~~~~~~~~~~~~RgdIniLl~GDPgtaKSQlL~yv~~ia---PRg 520 (916)
T PTZ00111 444 ILLDSFAPSIKARNNVKIGLLCQLFSCNANSSDNNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLS---PRS 520 (916)
T ss_pred HHHHHHCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC---CCE
T ss_conf 99873086211522699999999848875456778776544444443454059995799601899999999728---742
Q ss_pred CCCCCHHHHCC--CCCCCHHHCCCCHHCCCC--CCCCCC---HHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC
Q ss_conf 00224477403--453201304771120356--677421---13221564102202144149899999999840457887
Q gi|254780877|r 629 MIRIDMSEYME--KHSVSRLIGSPPGYVGYE--EGGALT---EAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTD 701 (853)
Q Consensus 629 lir~dMsey~e--~~~vs~LiGappGYvG~~--~gg~Lt---e~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd 701 (853)
+ |.. ..|...|.. ||-.+ +.|.++ .|+----..|...||++|...+-...+..+++-.++
T Consensus 521 v-------ytsGkgsSavGLTA----~v~~~d~~tg~~~LEaGALVLaD~GvccIDEFDKM~~~~rs~lhEaMEQQtv-- 587 (916)
T PTZ00111 521 I-------YTSGKSSSSVGLTA----SIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTV-- 587 (916)
T ss_pred E-------EECCCCCCCCCCEE----EEEECCCCCCCEEEECCCEEECCCCEEEEEHHHCCCHHHHHHHHHHHHHHHH--
T ss_conf 6-------74598654226468----9983268878689854808972798799622203685678899998866312--
Q ss_pred CCCCEEECCCCEEEECCCHHHHHHHCCH-HHH----HHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 9997783033155954851268764032-679----9999999986288577266681586288998999
Q gi|254780877|r 702 SQGRTVDFRNTLIIMTSNLGAEYLIEDG-DSV----HDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDM 766 (853)
Q Consensus 702 ~~G~~v~f~n~iii~TsN~G~~~~~~~~-~~~----~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~ 766 (853)
+-..+=|+.|-|.-...++..+ ... ...+.+. =.++|.+|.|+|-|+..-.-..++.
T Consensus 588 ------SIAKAGI~~tLnARtSvLAaANP~~gry~~~~~v~en--I~lpp~LLSRFDLIfl~lD~~de~~ 649 (916)
T PTZ00111 588 ------TIAKAGIVATLKAETAILASCNPINSRYNKNKAVIEN--INISPSLFTRFDLIYLVLDHIDQDT 649 (916)
T ss_pred ------HHHHCCEEEEECHHHHHHHHCCCCCCCCCCCCCHHHH--CCCCCHHHHHHHEEEEEECCCCHHH
T ss_conf ------3532350454120345655328655657878676764--5799403312204677505786566
No 390
>PRK06696 uridine kinase; Validated
Probab=96.89 E-value=0.0026 Score=45.83 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHC
Q ss_conf 99999999998741012365665128987267861688999999987237765300224477403453201304
Q gi|254780877|r 575 AAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIG 648 (853)
Q Consensus 575 ~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiG 648 (853)
+-|+.+++.|.. ..|.+|+ ..-..||+|.|||.+|+.|++.|-......+++.|-.|-...+.-.-.|
T Consensus 9 ~~~~~~~~~i~~-----~~p~rpl-~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r~~~g 76 (227)
T PRK06696 9 QVVKEIANHILT-----LNLTRPL-RVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIRYRRG 76 (227)
T ss_pred HHHHHHHHHHHH-----CCCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHC
T ss_conf 899999999983-----5999868-9997789987879999999999974699489971544347377776516
No 391
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.86 E-value=0.048 Score=35.59 Aligned_cols=181 Identities=24% Similarity=0.357 Sum_probs=99.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCC------------C------------------HHHCCCEEEEEEHHHHHCCCC
Q ss_conf 6689528874077799999998734899------------8------------------444574378873135421745
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDI------------P------------------ESLKGKRLMALDMGALIAGAK 250 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~v------------p------------------~~l~~~~i~~ld~~~l~ag~~ 250 (853)
++++-|+.|+|||+++.+||...-...+ | -.-+-.+++.+-+++
T Consensus 40 gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~a------ 113 (423)
T COG1239 40 GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGA------ 113 (423)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCEECCCCCC------
T ss_conf 26876688752779999999867963321688788998870555199986202324454221003122388763------
Q ss_pred CCCHHHHHHHH------HHHH---------HHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC---------
Q ss_conf 42024545899------9999---------86079976999636277302666554335888876531246---------
Q gi|254780877|r 251 FRGEFEERLKS------LLCE---------IRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG--------- 306 (853)
Q Consensus 251 ~rg~~e~r~~~------i~~~---------~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG--------- 306 (853)
-|.|+-+ .+++ +..++ .=||||||+.-|= --..|.|--.++.|
T Consensus 114 ----teDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~--------d~lvd~LLd~aaeG~n~vereGi 180 (423)
T COG1239 114 ----TEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD--------DHLVDALLDVAAEGVNDVEREGI 180 (423)
T ss_pred ----CHHHHCCCCCHHHHHHCCCCCCCCCCHHHCC-CCEEEEECCCCCC--------HHHHHHHHHHHHHCCCEEEECCE
T ss_conf ----0433004567999972683002775110035-8879872334351--------89999999999717740335750
Q ss_pred ------CEEEEEEECHHHHHHHHHCCHHHHHCCC-EEECCCCC-HHHHHHHH-HHHHHHHHH----HCCCCC-CHHHHHH
Q ss_conf ------6048997448999997300111320231-11115777-67899999-997898654----149610-1589999
Q gi|254780877|r 307 ------ELHCIGATTLDEYRKYIEKDPALARRFQ-SLLVGEPT-VTDTISIL-RGLKERYEQ----HHKVRI-SDSALVS 372 (853)
Q Consensus 307 ------~l~~IgaTT~~Eyrk~iEkD~Al~RRFq-~i~V~Eps-~~~t~~iL-~gl~~~yE~----~H~V~i-~d~al~~ 372 (853)
.+-+||++-|+|=. ==+-|--||- .|.+..|+ .++-+.|. |.+. |+. |+...- ...++.+
T Consensus 181 si~hpa~fvligTmNPEeGe----LrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~--f~~~Pe~f~~~~~~~~~~lR~ 254 (423)
T COG1239 181 SIRHPARFLLIGTMNPEEGE----LRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA--FEAVPEAFLEKYADAQRALRA 254 (423)
T ss_pred EECCCCCEEEEEECCCCCCC----CCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHH
T ss_conf 31367617999644854466----324667541115623478878888999999887--500829999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9863332024576747789999999998754102
Q gi|254780877|r 373 AAVLSNRYITDRFLPDKAIDLMDEASARVRMQID 406 (853)
Q Consensus 373 av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~ 406 (853)
-.-.+..-++...++|-+...+=++|++..+..+
T Consensus 255 ~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~ 288 (423)
T COG1239 255 RIIAARSLLSEVELDDDAETKIAELCARLAVDGH 288 (423)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999984466646767799999999998565787
No 392
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.85 E-value=0.0087 Score=41.62 Aligned_cols=95 Identities=22% Similarity=0.360 Sum_probs=54.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEE----EEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6689528874077799999998734899844457437----887313542174542024545899999986079976999
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRL----MALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILF 276 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i----~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilf 276 (853)
..-|-|+.|.|||-|..-+-..+--. +.+|+ |..++-+-+. +.+|+ ..-+..+.+++.+. .-+||
T Consensus 63 GlYl~G~VGrGKTmLMDlFy~~lp~~------~K~R~HFh~FM~~vH~~l~--~~~~~-~dpl~~va~~l~~~--~~lLC 131 (361)
T pfam03969 63 GLYLWGGVGRGKTHLMDSFFESLPGE------RKRRTHFHRFMFRVHDELT--TLQGG-DDPLPIAADRFANE--ARLLC 131 (361)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHH--HHHCC-CCCHHHHHHHHHHC--CCEEE
T ss_conf 68988998886999999999867753------4445667899999999999--97667-76389999999725--87799
Q ss_pred ECCHHHH-CCCCCCCCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 6362773-02666554335888876531246604899
Q gi|254780877|r 277 IDELHVL-VGAGKTDGAMDASNLLKPSLARGELHCIG 312 (853)
Q Consensus 277 ide~h~~-~gaG~~~g~~Daan~LKP~LarG~l~~Ig 312 (853)
+||+|.- |+ -+|=.+.+++-...+|- .+|.
T Consensus 132 fDEFqV~DIa-----DAMIL~rLf~~Lf~~gv-vlV~ 162 (361)
T pfam03969 132 FDEFEVDDIG-----DAMILGRLFEALFARGV-SLVA 162 (361)
T ss_pred EEEEEECCHH-----HHHHHHHHHHHHHHCCC-EEEE
T ss_conf 7635616788-----89999999999997797-8998
No 393
>PRK13946 shikimate kinase; Provisional
Probab=96.84 E-value=0.034 Score=36.77 Aligned_cols=145 Identities=18% Similarity=0.277 Sum_probs=67.7
Q ss_pred HHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHH
Q ss_conf 996336777866895288740777999999987348--9984445743788731354217454202--454589999998
Q gi|254780877|r 191 IQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIAGAKFRGE--FEERLKSLLCEI 266 (853)
Q Consensus 191 ~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--~e~r~~~i~~~~ 266 (853)
-+|-.+-.|+|.+|||-+|+|||+|-.-||+++--. |...... +-+...+..+.+ ..|| |-+.=..++.++
T Consensus 12 ~~~~~~l~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~~IE--~~~g~sI~eIF~---~~GE~~FR~~E~~~l~~l 86 (195)
T PRK13946 12 EQIRAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIE--RAARMTIPEIFA---TYGEPEFRDLERRVIARL 86 (195)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHHCCCHHHHHH---HHCHHHHHHHHHHHHHHH
T ss_conf 999998589958998999998899999999997979898859999--980998999999---869799999899999998
Q ss_pred HHCCCCEEEEECCHHHHCCCCCCCCCCCHHH--HHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHH
Q ss_conf 6079976999636277302666554335888--87653124660489974489999973001113202311111577767
Q gi|254780877|r 267 RSEDGEIILFIDELHVLVGAGKTDGAMDASN--LLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVT 344 (853)
Q Consensus 267 ~~~~~~~ilfide~h~~~gaG~~~g~~Daan--~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~ 344 (853)
...+ +.| |..|++. -++-.| +|| ..|-+ +-=-+.++.-.+-+..++ .|- .+...+..
T Consensus 87 ~~~~-~~V---------IstGGG~-v~~~~n~~~L~---~~g~v-I~L~~~~e~l~~Rl~~~~--~RP----Ll~~~~~~ 145 (195)
T PRK13946 87 LKGG-PLV---------LATGGGA-FMNEETRAAIR---EKGIS-VWLKADLDVLWERVSRRD--TRP----LLRTADPK 145 (195)
T ss_pred HCCC-CEE---------EECCCCC-CCCHHHHHHHH---HCCEE-EEEECCHHHHHHHHCCCC--CCC----CCCCCCHH
T ss_conf 6489-879---------9758742-36899999999---57968-998499999999972899--999----89998879
Q ss_pred HHH-HHHHHHHHHHHHHC
Q ss_conf 899-99999789865414
Q gi|254780877|r 345 DTI-SILRGLKERYEQHH 361 (853)
Q Consensus 345 ~t~-~iL~gl~~~yE~~H 361 (853)
+.+ .++..-.+.|++.|
T Consensus 146 ~~l~~l~~~R~~lY~~Ad 163 (195)
T PRK13946 146 ETLARLMEERYPVYAQAD 163 (195)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999789
No 394
>KOG1514 consensus
Probab=96.83 E-value=0.0097 Score=41.22 Aligned_cols=216 Identities=19% Similarity=0.290 Sum_probs=109.8
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCE-EEEEECCCCHHHHHHHHHHHHHHCCC-----CC--CCCCCCHHHHC
Q ss_conf 767459489999999999874101236566512-89872678616889999999872377-----65--30022447740
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMG-SFMFLGPTGVGKTELVKSLARLLFDD-----EN--SMIRIDMSEYM 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~-~flf~GptGvGKTelak~la~~lf~~-----~~--~lir~dMsey~ 638 (853)
.+.+-+-+.--..|..-++-. +.+ +-.| .|.-.|-+|+|||-+...+-+.|-.. .. .++-+|--.+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~---i~~--~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514 395 PESLPCRENEFSEIEDFLRSF---ISD--QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred CCCCCCHHHHHHHHHHHHHHH---CCC--CCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEC
T ss_conf 421441468899999999976---277--777407998469998832129999999998775057898607987144615
Q ss_pred CCCCCCHHH-CCCCH-HCCCCCCCCCCHH-----HHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCC
Q ss_conf 345320130-47711-2035667742113-----2215641022021441498999999998404578879997783033
Q gi|254780877|r 639 EKHSVSRLI-GSPPG-YVGYEEGGALTEA-----VRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRN 711 (853)
Q Consensus 639 e~~~vs~Li-GappG-YvG~~~gg~Lte~-----vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n 711 (853)
.++.+.--| -+-+| -++.+.+-.+.+. --+++-+|||.||.+---..=+++|+.+||=-.+..++
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sK-------- 541 (767)
T KOG1514 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSK-------- 541 (767)
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCC--------
T ss_conf 889999999997555743077889999865416787878779996357877352098897774077678986--------
Q ss_pred CEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC-CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 155954851268764032679999999998628857726668-1586288998999999999999999999857989999
Q gi|254780877|r 712 TLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD-EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDF 790 (853)
Q Consensus 712 ~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid-~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~ 790 (853)
-+||.-+|- + +...+.|.+--=.|++ --+.|.|++...+..|+...|..+ ..|
T Consensus 542 Lvvi~IaNT-----m-----------dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~----------~~f 595 (767)
T KOG1514 542 LVVIAIANT-----M-----------DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL----------DAF 595 (767)
T ss_pred EEEEEECCC-----C-----------CCHHHHHCCCHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH----------HHC
T ss_conf 699995165-----6-----------47798854311233065055137788999999999860315----------431
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8899999997089822062157999998733
Q gi|254780877|r 791 DDQVIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 791 ~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
+..|+++++++--...--||--..+..+-++
T Consensus 596 ~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514 596 ENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 4248999998877504227888899899999
No 395
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=96.79 E-value=0.045 Score=35.78 Aligned_cols=203 Identities=20% Similarity=0.373 Sum_probs=126.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCC--CEEEECCCCCCHHHHHHHHHHHHHC----------CCCCHHHCCCEEEEEEHHH
Q ss_conf 533333578999999963367778--6689528874077799999998734----------8998444574378873135
Q gi|254780877|r 177 LDPVIGRDDEMRRAIQVLSRRTKN--NPVLIGDPGVGKTAIIEGLASRIIN----------GDIPESLKGKRLMALDMGA 244 (853)
Q Consensus 177 LDPVIGRe~EI~~~~~iL~r~~k~--n~~lvGe~GvGKtaive~la~~i~~----------~~vp~~l~~~~i~~ld~~~ 244 (853)
--++||+-.=.+.+.++++|=.++ ++++-||.|.||==++..|-..=-. .-+|..|-.-.+|.=.-|+
T Consensus 134 ~~~liG~aPAMQevfR~igRL~~~~l~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~ESELFGHEkGA 213 (471)
T TIGR01818 134 SAELIGEAPAMQEVFRAIGRLSRSDLSVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIESELFGHEKGA 213 (471)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHHHHHCCCCCCC
T ss_conf 62123688516899999997516960588855757758999998401375557773273023222466554321456530
Q ss_pred HHC-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHH-------------HCCCCEEE
Q ss_conf 421-7454202454589999998607997699963627730266655433588887653-------------12466048
Q gi|254780877|r 245 LIA-GAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPS-------------LARGELHC 310 (853)
Q Consensus 245 l~a-g~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~-------------LarG~l~~ 310 (853)
+-. .+.-.|-||+ ++|.. ||.|||==+ .+|+=-=|-=. .-|-+.|+
T Consensus 214 FTGA~~~~~GRFEQ-----------A~GGT-LFLDEIGDM--------Pl~~QTRLLRVL~~G~f~rVGG~~p~k~DVRi 273 (471)
T TIGR01818 214 FTGANTRRQGRFEQ-----------ADGGT-LFLDEIGDM--------PLDLQTRLLRVLADGEFYRVGGRTPIKVDVRI 273 (471)
T ss_pred CCCCCCCCCCCEEE-----------CCCCC-EECCCCCCC--------CHHHHHHHHHHHCCCCEEEECCCEEEEEEEEE
T ss_conf 00102556777253-----------48882-101021678--------77687779886407865772682024550466
Q ss_pred EEEECHHHHHHHHHCCH---HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCCC
Q ss_conf 99744899999730011---13202311111577767899999997898654149610158999998633320-245767
Q gi|254780877|r 311 IGATTLDEYRKYIEKDP---ALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY-ITDRFL 386 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~---Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY-i~~r~l 386 (853)
|+||- ..-++.|+.=. -|==|..+|.|.=|..-|=.+=+..+...| |..| ++.- ++-|.|
T Consensus 274 ~AATh-q~Le~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhF------------L~~a---~~~l~~~~k~L 337 (471)
T TIGR01818 274 VAATH-QDLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHF------------LALA---AKELDVEPKLL 337 (471)
T ss_pred EECCC-HHHHHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHH------------HHHH---HHHCCCCCCCC
T ss_conf 73366-56899965588135555512334621687212266899999999------------9998---87428651134
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 47789999999998754102221457887999997445
Q gi|254780877|r 387 PDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKI 424 (853)
Q Consensus 387 PDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~ 424 (853)
-..+++. +++..+|-.+.++|+-.+.|..
T Consensus 338 ~~~~~~~---------L~~~~WPGNVR~LEN~cR~l~~ 366 (471)
T TIGR01818 338 SPEALEA---------LKRYDWPGNVRELENVCRRLTV 366 (471)
T ss_pred CHHHHHH---------HHHCCCCCCHHHHHHHHHHHHH
T ss_conf 8899999---------9725889852457789999987
No 396
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.78 E-value=0.0053 Score=43.34 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.4
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 89872678616889999999
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLA 619 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la 619 (853)
...++||+|.|||.|.+.+-
T Consensus 23 ~~~iiG~nGsGKSTLl~~~~ 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998999999888
No 397
>PRK06921 hypothetical protein; Provisional
Probab=96.76 E-value=0.007 Score=42.39 Aligned_cols=72 Identities=25% Similarity=0.513 Sum_probs=47.7
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCC-CCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 777866895288740777999999987348-9984445743788731354217454202454589999998607997699
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIING-DIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIIL 275 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~-~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~il 275 (853)
.++||.++.|+||+|||-+.-.+|..+.+. .+ .|+-.....++..- +..|+ .....++.+++.+ +|
T Consensus 114 ~~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~-------~Vly~~~~~~~~~l--k~~~~-~~~~~l~~~~~~d---lL 180 (265)
T PRK06921 114 CRKNSIALLGQPGSGKTHLLTAAANELMRKKGV-------PVLYFPFVEGFGDL--KDDFD-LLEAKLNRMKKVE---VL 180 (265)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-------EEEEEEHHHHHHHH--HHHHH-HHHHHHHHHHCCC---EE
T ss_conf 776627997289898899999999999996297-------19998879999999--98888-8999999863299---99
Q ss_pred EECCHH
Q ss_conf 963627
Q gi|254780877|r 276 FIDELH 281 (853)
Q Consensus 276 fide~h 281 (853)
+||++-
T Consensus 181 IIDDLf 186 (265)
T PRK06921 181 FIDDLF 186 (265)
T ss_pred EEECCC
T ss_conf 982212
No 398
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.75 E-value=0.0028 Score=45.64 Aligned_cols=182 Identities=19% Similarity=0.357 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHCCC--CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-------
Q ss_conf 78999999963367--778668952887407779999999873489984445743788731354217454202-------
Q gi|254780877|r 184 DDEMRRAIQVLSRR--TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE------- 254 (853)
Q Consensus 184 e~EI~~~~~iL~r~--~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~------- 254 (853)
-.|++|+ |..- .-+-++|=||||+||+++.=-+|..+.+.. .+++.+.---=+.--+.|.+
T Consensus 68 i~ElDRV---LGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~-------~~vLYvSGEES~~QIk~RA~RLg~~~~ 137 (372)
T cd01121 68 IEELDRV---LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRLGISTE 137 (372)
T ss_pred CHHHHHH---HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf 3666540---057730671799825998868899999999998639-------938998245678999989998587887
Q ss_pred -----HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC--CCCCCCC-----HHHHHHHHHCCCC-EEEEEEECHHHHHH
Q ss_conf -----454589999998607997699963627730266--6554335-----8888765312466-04899744899999
Q gi|254780877|r 255 -----FEERLKSLLCEIRSEDGEIILFIDELHVLVGAG--KTDGAMD-----ASNLLKPSLARGE-LHCIGATTLDEYRK 321 (853)
Q Consensus 255 -----~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG--~~~g~~D-----aan~LKP~LarG~-l~~IgaTT~~Eyrk 321 (853)
-|-.+..|+..+...+ +-+|.||-|+|+.... ++.|++. ++.++.=+=.+|- +=+||
T Consensus 138 ~l~l~set~le~Il~~i~~~k-P~~lIIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVG--------- 207 (372)
T cd01121 138 NLYLLAETNLEDILASIEELK-PDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG--------- 207 (372)
T ss_pred CCEEEECCCHHHHHHHHHHHC-CCEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE---------
T ss_conf 727884356999999999719-9889995622020377677998789999999999999986197399998---------
Q ss_pred HHHCCHH------HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 7300111------320231111157776789999999789865414961---015899999863332024576
Q gi|254780877|r 322 YIEKDPA------LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVR---ISDSALVSAAVLSNRYITDRF 385 (853)
Q Consensus 322 ~iEkD~A------l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~---i~d~al~~av~ls~rYi~~r~ 385 (853)
|+.||+. |+---..|.-=|-+....+.|||..|-||..-+.|- .++.-|...-+=|.-|+.+|.
T Consensus 208 HVTK~G~iAGPkvLEHmVDtVl~fEgd~~~~~R~LR~~KNRFG~t~EiGvFeM~~~GL~~V~nPS~~Fl~~~~ 280 (372)
T cd01121 208 HVTKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSERE 280 (372)
T ss_pred EECCCCCCCCCHHHEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCC
T ss_conf 7626886377403100213688751577655035674115677754058887316870563685698862698
No 399
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=96.74 E-value=0.0089 Score=41.54 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=36.2
Q ss_pred EEEEECHHHHHHHHH--CCHHHHHCCCEEECCCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 899744899999730--01113202311111577-767899999997898654149610158999998633
Q gi|254780877|r 310 CIGATTLDEYRKYIE--KDPALARRFQSLLVGEP-TVTDTISILRGLKERYEQHHKVRISDSALVSAAVLS 377 (853)
Q Consensus 310 ~IgaTT~~Eyrk~iE--kD~Al~RRFq~i~V~Ep-s~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls 377 (853)
+++-|-..||+.+.- +..||.+|--+|.|.=- .+.+-..|+..+...-+ .-.+.+....|+.|...|
T Consensus 300 IvahsNesE~q~fk~n~~nEAf~dRi~~v~vPY~L~vseE~kIYEKll~~s~-ls~~h~APhTL~~aa~Fs 369 (649)
T COG2766 300 IVAHSNESEWQTFKNNKNNEAFLDRIYKVKVPYCLRVSEEAKIYEKLLQNSE-LSDAHCAPHTLEVAALFS 369 (649)
T ss_pred EEEECCCHHHHHHHCCCCHHHHHHHEEEEECCEEEEECHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHH
T ss_conf 7841672888875038734888741046545501232188899999825466-665665805899999888
No 400
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.72 E-value=0.0034 Score=44.95 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=21.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 8987267861688999999987237
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFD 624 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~ 624 (853)
..-.+||+|.|||.|++.|+..+--
T Consensus 30 ~vaIvG~sGsGKSTLl~ll~gl~~p 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998099999999666667
No 401
>PRK10867 signal recognition particle protein; Provisional
Probab=96.71 E-value=0.068 Score=34.32 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 786689528874077799999998734
Q gi|254780877|r 199 KNNPVLIGDPGVGKTAIIEGLASRIIN 225 (853)
Q Consensus 199 k~n~~lvGe~GvGKtaive~la~~i~~ 225 (853)
.+-.++||--|+|||+-+--||..+-+
T Consensus 100 p~VIm~vGLqGsGKTTT~aKLA~~lk~ 126 (453)
T PRK10867 100 PAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (453)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 969999746888518589999999997
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0011 Score=48.79 Aligned_cols=97 Identities=26% Similarity=0.355 Sum_probs=58.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH-H-HH-CCC-CCCCCCCCH---HHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC-
Q ss_conf 51289872678616889999999-8-72-377-653002244---7740345320130477112035667742113221-
Q gi|254780877|r 597 PMGSFMFLGPTGVGKTELVKSLA-R-LL-FDD-ENSMIRIDM---SEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR- 668 (853)
Q Consensus 597 p~~~flf~GptGvGKTelak~la-~-~l-f~~-~~~lir~dM---sey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~- 668 (853)
-=|+|-|+||||||||.+.-.|| . .+ ||. .-+||+.|- +-+-.-.+..+++|-| -||-++. ..|-..+.+
T Consensus 347 ~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvp-v~~~~~~-~~l~~~l~~l 424 (557)
T PRK12727 347 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIA-VHEADSA-ESLLDLLERL 424 (557)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCE-EEEECCH-HHHHHHHHHH
T ss_conf 0764787437776731179999999999739981899972664087999999999983975-7982899-9999999983
Q ss_pred CCCCEEEEHHHHHCCHHH-HHHHHHHHH
Q ss_conf 564102202144149899-999999840
Q gi|254780877|r 669 HPYQVVLFDEIEKAHSDV-HNILLQVLD 695 (853)
Q Consensus 669 ~P~sVil~DEiEKah~~v-~~~llqild 695 (853)
.-+.+||.|-.--.|.|. +.--|+.|+
T Consensus 425 ~~~~lvliDTaG~~~rd~~~~~~~~~l~ 452 (557)
T PRK12727 425 RDYKLVLIDTAGMGQRDRALAAQLNWLR 452 (557)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 6999899949998846999999999875
No 403
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.70 E-value=0.0024 Score=46.18 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=41.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHH
Q ss_conf 66512898726786168899999998723776530022447740345320130477112
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGY 653 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGY 653 (853)
++|. ++.|+|.||.|||.+|+.|.+.|+....+.+.+|.-++-+ .++...||
T Consensus 22 ~kg~-viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~------~l~~dlgf 73 (198)
T PRK03846 22 HKGV-VLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRH------GLCSDLGF 73 (198)
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHH------HHCCCCCC
T ss_conf 9986-9998799999889999999999997599759977799987------43667898
No 404
>KOG1969 consensus
Probab=96.69 E-value=0.045 Score=35.81 Aligned_cols=168 Identities=24% Similarity=0.367 Sum_probs=89.9
Q ss_pred CCCCCCCC-CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH-
Q ss_conf 12365665-1289872678616889999999872377653002244774034532013047711203566774211322-
Q gi|254780877|r 590 GLQDPQRP-MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR- 667 (853)
Q Consensus 590 gl~~~~~p-~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr- 667 (853)
++.+.+|| --.+|++||+|.|||.||..+|+.-. =+.+-+|-|+=-..+.+-.-|-+. .-++.+-
T Consensus 317 ~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaG---YsVvEINASDeRt~~~v~~kI~~a----------vq~~s~l~ 383 (877)
T KOG1969 317 ELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAG---YSVVEINASDERTAPMVKEKIENA----------VQNHSVLD 383 (877)
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CEEEEECCCCCCCHHHHHHHHHHH----------HHHCCCCC
T ss_conf 46866798400687536887872479999998628---548873255543478899999998----------86411225
Q ss_pred --CCCCCEEEEHHHHHCCHHHHHHHHHHHH-CCEEEC-CCCCEE----E-----CCCCEEEECCC-HHHHHHHCCHHHHH
Q ss_conf --1564102202144149899999999840-457887-999778----3-----03315595485-12687640326799
Q gi|254780877|r 668 --RHPYQVVLFDEIEKAHSDVHNILLQVLD-DGRLTD-SQGRTV----D-----FRNTLIIMTSN-LGAEYLIEDGDSVH 733 (853)
Q Consensus 668 --~~P~sVil~DEiEKah~~v~~~llqild-~G~ltd-~~G~~v----~-----f~n~iii~TsN-~G~~~~~~~~~~~~ 733 (853)
.+|.|+| .|||+-|.+-..+++|.++. ++..+- ..+... + ++-- |||-.| +=+
T Consensus 384 adsrP~CLV-iDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICNdLYa----------- 450 (877)
T KOG1969 384 ADSRPVCLV-IDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP-IICICNDLYA----------- 450 (877)
T ss_pred CCCCCCEEE-EECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCC-EEEEECCCCC-----------
T ss_conf 688863599-842468728999999999974161421686632034555304654587-7898647555-----------
Q ss_pred HHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 999999986288577266681586288998999999999999999999857989999889999999708
Q gi|254780877|r 734 DKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRG 802 (853)
Q Consensus 734 ~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 802 (853)
.+|+. ++| +-.|+.|.|-+...+. ++|+.-.... .+.++..++..|++.+
T Consensus 451 ----PaLR~-Lr~-----~A~ii~f~~p~~s~Lv-------~RL~~IC~rE--~mr~d~~aL~~L~el~ 500 (877)
T KOG1969 451 ----PALRP-LRP-----FAEIIAFVPPSQSRLV-------ERLNEICHRE--NMRADSKALNALCELT 500 (877)
T ss_pred ----HHHHH-CCC-----CEEEEEECCCCHHHHH-------HHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_conf ----33331-021-----0489995699766899-------9999997641--5778878999999986
No 405
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.69 E-value=0.042 Score=36.05 Aligned_cols=99 Identities=29% Similarity=0.448 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 57899999996336777866895288740777999999987348998444574378873135421745420245458999
Q gi|254780877|r 183 RDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSL 262 (853)
Q Consensus 183 Re~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i 262 (853)
|+.=++.+.+-+...--||++|.|--|.||+++|..+-...... +-|+++++-.-+.+ +-.|
T Consensus 69 k~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~~-----------Lp~l 130 (287)
T COG2607 69 KEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLAT-----------LPDL 130 (287)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEECHHHHHH-----------HHHH
T ss_conf 99999989999728865236776377777479999999998741-------77079976888865-----------7999
Q ss_pred HHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99986079976999636277302666554335888876531246
Q gi|254780877|r 263 LCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG 306 (853)
Q Consensus 263 ~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG 306 (853)
++.++..+.+.|||+|++ +-+.+-++--.||++|.-|
T Consensus 131 ~~~Lr~~~~kFIlFcDDL-------SFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 131 VELLRARPEKFILFCDDL-------SFEEGDDAYKALKSALEGG 167 (287)
T ss_pred HHHHHCCCCEEEEEECCC-------CCCCCCHHHHHHHHHHCCC
T ss_conf 999961886089995677-------7777813899999985388
No 406
>KOG2227 consensus
Probab=96.68 E-value=0.011 Score=40.87 Aligned_cols=165 Identities=24% Similarity=0.284 Sum_probs=89.2
Q ss_pred CCCCCCCCHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH-HCCC
Q ss_conf 9853333357899999996----3367778668952887407779999999873489984445743788731354-2174
Q gi|254780877|r 175 GKLDPVIGRDDEMRRAIQV----LSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL-IAGA 249 (853)
Q Consensus 175 GkLDPVIGRe~EI~~~~~i----L~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-~ag~ 249 (853)
+.=+-+.||+.|.+.+-.- |+-.+-..--+-|.||.|||+...-+-..... ..+.-.++.++-.+| -+++
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-----~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-----SSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCCCHHH
T ss_conf 7987765258889999999985431266764575179986548899999874034-----31665169985123542588
Q ss_pred CC-------------CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEE-EEC
Q ss_conf 54-------------2024545899999986079976999636277302666554335888876531246604899-744
Q gi|254780877|r 250 KF-------------RGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIG-ATT 315 (853)
Q Consensus 250 ~~-------------rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~Ig-aTT 315 (853)
.| +|.+-+-+..+-.....+...++++.||+..++- ++.+.+-..- .-|.|-...+-.|| |-+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t--r~~~vLy~lF-ewp~lp~sr~iLiGiANs 298 (529)
T KOG2227 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT--RSQTVLYTLF-EWPKLPNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH--CCCCEEEEEH-HCCCCCCCEEEEEEEHHH
T ss_conf 9999988898874289504789999999875256338987212567760--4653143210-013677660566640013
Q ss_pred HHHHHHHHHCCHHHHHC-------CCEEECCCCCHHHHHHHHHHH
Q ss_conf 89999973001113202-------311111577767899999997
Q gi|254780877|r 316 LDEYRKYIEKDPALARR-------FQSLLVGEPTVTDTISILRGL 353 (853)
Q Consensus 316 ~~Eyrk~iEkD~Al~RR-------Fq~i~V~Eps~~~t~~iL~gl 353 (853)
.|=- |..|.|- =+.+.-.+-|.++..+||+.-
T Consensus 299 lDlT------dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227 299 LDLT------DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred HHHH------HHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 5577------77766654025788746655687889999999999
No 407
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.66 E-value=0.0033 Score=44.99 Aligned_cols=187 Identities=21% Similarity=0.360 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHCCC--CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-------
Q ss_conf 78999999963367--778668952887407779999999873489984445743788731354217454202-------
Q gi|254780877|r 184 DDEMRRAIQVLSRR--TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE------- 254 (853)
Q Consensus 184 e~EI~~~~~iL~r~--~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~------- 254 (853)
..|++|+ |..- .-+-.+|=||||+||+++.=-+|..++++ .+++.+.---=++--+.|.+
T Consensus 76 i~ElDRV---LGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~--------~~vLYvSGEES~~Qik~RA~RLg~~~~ 144 (454)
T PRK11823 76 IGELDRV---LGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAG--------GKVLYVSGEESLQQIKLRAERLGLPSD 144 (454)
T ss_pred CHHHHHC---CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--------CCEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 5566522---15872066489950799888999999999998559--------957998150157899999997588888
Q ss_pred -----HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC--CCCCCCC-----HHHHHHHHHCCCC-EEEEEEECHHHHHH
Q ss_conf -----454589999998607997699963627730266--6554335-----8888765312466-04899744899999
Q gi|254780877|r 255 -----FEERLKSLLCEIRSEDGEIILFIDELHVLVGAG--KTDGAMD-----ASNLLKPSLARGE-LHCIGATTLDEYRK 321 (853)
Q Consensus 255 -----~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG--~~~g~~D-----aan~LKP~LarG~-l~~IgaTT~~Eyrk 321 (853)
-|-.+..|+..+.+.+ +-++.||-|+|+.-.. ++.|++. ++.++.=+=.+|- +=+||--|-+.
T Consensus 145 ~l~l~~et~l~~Il~~i~~~~-P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG--- 220 (454)
T PRK11823 145 NLYLLAETNLEDILATIEEEK-PDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEG--- 220 (454)
T ss_pred CCEEEECCCHHHHHHHHHHHC-CCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---
T ss_conf 737885368999999998609-9889994311154156677899789999999999999974498289999772677---
Q ss_pred HHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 7300111320231111157776789999999789865414961---015899999863332024576
Q gi|254780877|r 322 YIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVR---ISDSALVSAAVLSNRYITDRF 385 (853)
Q Consensus 322 ~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~---i~d~al~~av~ls~rYi~~r~ 385 (853)
.|.--..|+---..|.-=|-+....+.|||..|-||..-+.|- .+++-|...-+=|.-|+.+|.
T Consensus 221 ~iAGPkvLEHmVDtVl~fEGd~~~~~RiLR~~KNRFG~t~EiGvFeM~~~GL~~v~nPS~~Fls~~~ 287 (454)
T PRK11823 221 AIAGPRVLEHMVDTVLYFEGDRHSRFRILRAVKNRFGATNEIGVFEMTEKGLREVSNPSELFLSERD 287 (454)
T ss_pred CCCCCHHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCC
T ss_conf 6466145222010468751576655024563124677666058998616884566887799862688
No 408
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.66 E-value=0.0014 Score=48.00 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=40.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCC--CCCCCCH---HHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHH-------H
Q ss_conf 8987267861688999999987237765--3002244---77403453201304771120356677421132-------2
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDEN--SMIRIDM---SEYMEKHSVSRLIGSPPGYVGYEEGGALTEAV-------R 667 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~--~lir~dM---sey~e~~~vs~LiGappGYvG~~~gg~Lte~v-------r 667 (853)
+++|+||||||||.+.-.||..+-.... .+|..|- +-.-+=-+.++.+|-| =|+.++ +..+.+.+ +
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~-~~~~~~-~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVP-VFEEGE-GKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE-EEECCC-CCCHHHHHHHHHHHHH
T ss_conf 99998999998899999999999976992899974887577999999999974985-992277-5587999999999987
Q ss_pred CCCCCEEEEHHHHHCCHH
Q ss_conf 156410220214414989
Q gi|254780877|r 668 RHPYQVVLFDEIEKAHSD 685 (853)
Q Consensus 668 ~~P~sVil~DEiEKah~~ 685 (853)
.+.+.+||.|--=..|.+
T Consensus 80 ~~~~D~IlIDTaGr~~~d 97 (173)
T cd03115 80 EENFDVVIVDTAGRLQID 97 (173)
T ss_pred HCCCCEEEEECCCCCCCC
T ss_conf 568998999788878799
No 409
>PRK13695 putative NTPase; Provisional
Probab=96.66 E-value=0.0073 Score=42.21 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=16.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 6689528874077799999998734
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIIN 225 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~ 225 (853)
...+.|+||||||+++.-+...+.+
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~ 29 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAR 29 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9998789998899999999999863
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0033 Score=44.99 Aligned_cols=100 Identities=27% Similarity=0.439 Sum_probs=56.9
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-C-CCC----CCCCCCCH---HHHCCCCCCCHHHCCCCHHCCCCCCCCCC
Q ss_conf 656651289872678616889999999872-3-776----53002244---77403453201304771120356677421
Q gi|254780877|r 593 DPQRPMGSFMFLGPTGVGKTELVKSLARLL-F-DDE----NSMIRIDM---SEYMEKHSVSRLIGSPPGYVGYEEGGALT 663 (853)
Q Consensus 593 ~~~~p~~~flf~GptGvGKTelak~la~~l-f-~~~----~~lir~dM---sey~e~~~vs~LiGappGYvG~~~gg~Lt 663 (853)
+..+| .+++|+||||||||.+.--||..+ . +.. -.||..|- .-.-.=-..+.++|-| =+|-|+. -.|.
T Consensus 170 ~~~k~-~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp-~~v~~~~-~dl~ 246 (388)
T PRK12723 170 DNLKK-RIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP-VKAIESF-KDLK 246 (388)
T ss_pred CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC-EEEECCH-HHHH
T ss_conf 35576-2899989988757879999999999862676773799980787588999999999997880-6985788-9999
Q ss_pred HHHHC-CCCCEEEEHHHHHCCHHHH--HHHHHHHH
Q ss_conf 13221-5641022021441498999--99999840
Q gi|254780877|r 664 EAVRR-HPYQVVLFDEIEKAHSDVH--NILLQVLD 695 (853)
Q Consensus 664 e~vr~-~P~sVil~DEiEKah~~v~--~~llqild 695 (853)
+++.+ .-+-+||.|-.=..|.+-. .=+-++++
T Consensus 247 ~~l~~~~~~D~IlIDTAGrs~~d~~~~~el~~~~~ 281 (388)
T PRK12723 247 EEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99997249999999589988568999999999997
No 411
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.0047 Score=43.79 Aligned_cols=142 Identities=20% Similarity=0.315 Sum_probs=70.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC--CCCCCCHH---HHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCC-
Q ss_conf 65128987267861688999999987237765--30022447---7403453201304771120356677421132215-
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDEN--SMIRIDMS---EYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRH- 669 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~--~lir~dMs---ey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~- 669 (853)
+-+-+.-|+||||||||.+.--||--+.+..+ +||+.|-- -.-+=-+-++++|.|= +|-++. -.|..++.+.
T Consensus 239 ~~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV-~VV~dp-~eL~~AL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-IAVRDE-AAMTRALTYFK 316 (436)
T ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE-EEECCH-HHHHHHHHHHH
T ss_conf 4171799989999888999999999986169808999806634769999999999849943-996888-99999999876
Q ss_pred ---CCCEEEEHHHHHCCHHHHH--HHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf ---6410220214414989999--99998404578879997783033155954851268764032679999999998628
Q gi|254780877|r 670 ---PYQVVLFDEIEKAHSDVHN--ILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAF 744 (853)
Q Consensus 670 ---P~sVil~DEiEKah~~v~~--~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f 744 (853)
-+-+||.|-.-..+.+-.. -|...++... -..+.++|..|... ..+.++-..|
T Consensus 317 dka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~----------p~ev~LVLSATTK~------------~DL~eIi~rF 374 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVE----------PDYICLTLSASMKS------------KDMIEIITNF 374 (436)
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC----------CCEEEEEEECCCCH------------HHHHHHHHHH
T ss_conf 3368888999298988468999999999985127----------77169999788998------------9999999972
Q ss_pred CHHHHCCCCCEEECCCCCHHH
Q ss_conf 857726668158628899899
Q gi|254780877|r 745 KPEFLNRLDEIILFEKLRKED 765 (853)
Q Consensus 745 ~peflnRid~iv~F~~l~~~~ 765 (853)
++ ++ +| -++|--|++..
T Consensus 375 ~~--l~-id-glIfTKLDET~ 391 (436)
T PRK11889 375 KD--IH-ID-GIVFTKFDETA 391 (436)
T ss_pred CC--CC-CC-EEEEEECCCCC
T ss_conf 57--99-88-28997132568
No 412
>KOG2227 consensus
Probab=96.63 E-value=0.083 Score=33.64 Aligned_cols=23 Identities=22% Similarity=0.448 Sum_probs=17.9
Q ss_pred HCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 01686678999876617866775
Q gi|254780877|r 529 EVVTSDNIANIVSRWTGIPVDKM 551 (853)
Q Consensus 529 ~~V~~~dVa~vvS~~TGIPv~kl 551 (853)
..|..++|+.++|...|-|....
T Consensus 401 ~~v~~~~va~viSk~~~s~~~~s 423 (529)
T KOG2227 401 KKVGVEHVAAVISKVDGSPSARS 423 (529)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 55006789988403016805555
No 413
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.63 E-value=0.014 Score=39.93 Aligned_cols=142 Identities=18% Similarity=0.302 Sum_probs=79.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCC-CEE
Q ss_conf 6512898726786168899999998723776530022447740345320130477112035667742113221564-102
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPY-QVV 674 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~-sVi 674 (853)
.+.....|.||+.+|||.+|.+|+..+-. +-|-.+. ++.|. ...-+. .++
T Consensus 111 ~krN~i~~~Gp~~TGks~la~ai~~~~~~-------~g~v~~~-----------N~~fp-----------~~d~~~~~~~ 161 (271)
T pfam01057 111 GKRNTVWFYGPASTGKTNLAQAIAHAVPL-------YGCVNWT-----------NENFP-----------FNDCPNKLLI 161 (271)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC-------EEEECCC-----------CCCCC-----------CCCCCCCEEE
T ss_conf 88756999889876789999999986895-------2785178-----------77887-----------6446547899
Q ss_pred EEHHHHHCCHHHHHHHHHHHHCCE-EECCCC-CEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHH-HCCHHHHCC
Q ss_conf 202144149899999999840457-887999-77830331559548512687640326799999999986-288577266
Q gi|254780877|r 675 LFDEIEKAHSDVHNILLQVLDDGR-LTDSQG-RTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRS-AFKPEFLNR 751 (853)
Q Consensus 675 l~DEiEKah~~v~~~llqild~G~-ltd~~G-~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~-~f~peflnR 751 (853)
..|| -+.+.++...+=++||-.. .-|.++ ..+.+.-+=+|+|||.--......+. ....-.+.|+. .+.-.|-.+
T Consensus 162 wwee-~~~~~~~ve~~r~il~G~~i~vD~k~k~~~~l~~~PviiTsn~di~~v~~g~~-~s~~Ha~~Lk~rm~~~~~~~~ 239 (271)
T pfam01057 162 WWEE-GLMTVKVVELAKAILGGTDVRVDQKCKGSVEIEPTPVIITSNHDITLVVDGNT-TSFEHAQPLKDRMYKFNLTKR 239 (271)
T ss_pred EECC-CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCEEEEEECCC-CCHHHHHHHHHHEEEEEECCC
T ss_conf 9807-88718899999997299962563478980023799789982785799986875-357777787653689885767
Q ss_pred CCCEEECCCCCHHHHHHHH
Q ss_conf 6815862889989999999
Q gi|254780877|r 752 LDEIILFEKLRKEDMAKIV 770 (853)
Q Consensus 752 id~iv~F~~l~~~~~~~i~ 770 (853)
+..- |.+++..++.+.+
T Consensus 240 l~~~--fg~it~~d~~~f~ 256 (271)
T pfam01057 240 LPPA--FGLITKEDVRQFL 256 (271)
T ss_pred CCCC--CCCCCHHHHHHHH
T ss_conf 4887--7854899999999
No 414
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.087 Score=33.48 Aligned_cols=165 Identities=20% Similarity=0.284 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHH
Q ss_conf 35789999999633677786689528874077799999998734899844457437887313542174542024545899
Q gi|254780877|r 182 GRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKS 261 (853)
Q Consensus 182 GRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~ 261 (853)
-|..=+.++++.+..+.. ..++.|+=+||||++++-+.+...+. ++-.+...+.+. +-++-+-++.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtllk~l~~~~~~~----------~iy~~~~d~~~~---~~~l~d~~~~ 86 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE----------IIYINFDDLRLD---RIELLDLLRA 86 (398)
T ss_pred HHHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCC----------EEEEECCCCCCC---HHHHHHHHHH
T ss_conf 367677998765035785-49998886477899999999747773----------599973620001---3567789999
Q ss_pred HHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCE--EEEEEECHHHHHHHHHCCHHHHHCCCEEECC
Q ss_conf 99998607997699963627730266655433588887653124660--4899744899999730011132023111115
Q gi|254780877|r 262 LLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGEL--HCIGATTLDEYRKYIEKDPALARRFQSLLVG 339 (853)
Q Consensus 262 i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l--~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~ 339 (853)
.++. ... ....+|+||||..= +--+.||...-+|.. =+.|.+..--=++. -..|.+|...+.+-
T Consensus 87 ~~~~-~~~-~~~yifLDEIq~v~---------~W~~~lk~l~d~~~~~v~itgsss~ll~~~~---s~~L~GR~~~~~l~ 152 (398)
T COG1373 87 YIEL-KER-EKSYIFLDEIQNVP---------DWERALKYLYDRGNLDVLITGSSSSLLSKEI---SESLAGRGKDLELY 152 (398)
T ss_pred HHHH-HCC-CCCEEEEEEECCCH---------HHHHHHHHHHCCCCCEEEEECCCHHHHCCCH---HHHCCCCEEEEEEC
T ss_conf 9985-222-57459998333761---------0899999997567750999837167541330---23249982378984
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 7776789999999789865414961015899999863332024576747
Q gi|254780877|r 340 EPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPD 388 (853)
Q Consensus 340 Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPD 388 (853)
+-|..|-+.... +.+.-. .. -.+-.+|+.-.-+|+
T Consensus 153 PlSF~Efl~~~~---------~~~~~~----~~-~~~f~~Yl~~GGfP~ 187 (398)
T COG1373 153 PLSFREFLKLKG---------EEIEPS----KL-ELLFEKYLETGGFPE 187 (398)
T ss_pred CCCHHHHHHHCC---------CCCCHH----HH-HHHHHHHHHHCCCCH
T ss_conf 888899864135---------210025----67-999999877289856
No 415
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.59 E-value=0.017 Score=39.14 Aligned_cols=118 Identities=24% Similarity=0.327 Sum_probs=68.8
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCC---CCCCCHHHHHHHHHHH
Q ss_conf 9999963367778668952887407779999999873489984445743788731354217---4542024545899999
Q gi|254780877|r 188 RRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAG---AKFRGEFEERLKSLLC 264 (853)
Q Consensus 188 ~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag---~~~rg~~e~r~~~i~~ 264 (853)
+..++...... .|.++.|++|||||-+...+|..+.+. |+.|+-+....|+.. +++.. .+....+++
T Consensus 173 ~~fi~~F~~~~-~nLlf~G~~G~GKTfLa~~IA~ell~~-------g~sViy~ta~~L~~~l~~~~~~~--~~~~~~~~~ 242 (330)
T PRK06835 173 LNFIKNFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDR-------GKTVIYRTSDELIENLREIRFNN--DNDAPELED 242 (330)
T ss_pred HHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHCCC--CCCHHHHHH
T ss_conf 99987247888-866988999998899999999999987-------99499962999999999975457--644899999
Q ss_pred HHHHCCCCEEEEECCHHHHCCCCCCCC-CCCHHHHHHHHHCCCCEEEEEEE--CHHHHHHH
Q ss_conf 986079976999636277302666554-33588887653124660489974--48999997
Q gi|254780877|r 265 EIRSEDGEIILFIDELHVLVGAGKTDG-AMDASNLLKPSLARGELHCIGAT--TLDEYRKY 322 (853)
Q Consensus 265 ~~~~~~~~~ilfide~h~~~gaG~~~g-~~Daan~LKP~LarG~l~~IgaT--T~~Eyrk~ 322 (853)
.+.+.+ +|.||++-+-. .++- .-..=+++--=+.++. .+|-+| +++|..+.
T Consensus 243 ~l~~~D---LLIIDDLG~E~---~t~~~~~~Lf~iIN~R~~~~k-~tIITTNl~~~eL~~~ 296 (330)
T PRK06835 243 LLINCD---LLIIDDLGTES---ITEFSKTELFNLINKRLLMNK-KMIISTNLSLEELLKT 296 (330)
T ss_pred HHHHCC---EEEEECCCCCC---CCHHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHH
T ss_conf 996189---89972103455---886899999999999986799-9799889998999998
No 416
>KOG0727 consensus
Probab=96.55 E-value=0.0062 Score=42.78 Aligned_cols=140 Identities=20% Similarity=0.317 Sum_probs=81.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 86689528874077799999998734899844457437887313542174542024545899999986079976999636
Q gi|254780877|r 200 NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDE 279 (853)
Q Consensus 200 ~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide 279 (853)
..++|-|+||.|||-++...|.--.. ..+.+.-+.++ .||-||--.-++.+..-.++ +.+.|+||||
T Consensus 190 rgvllygppg~gktml~kava~~t~a----------~firvvgsefv--qkylgegprmvrdvfrlake-napsiifide 256 (408)
T KOG0727 190 RGVLLYGPPGTGKTMLAKAVANHTTA----------AFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKE-NAPSIIFIDE 256 (408)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCH----------HEEEECCHHHH--HHHHCCCCHHHHHHHHHHHC-CCCCEEEEEH
T ss_conf 62277579997578999998612611----------14463018999--99855483899999998761-6983798622
Q ss_pred HHHHCCCC--CCCCC-CCHHHHHHHH-------HCCCCEEEEEEECHHHHHHHHHCCHHHHHC---CCEEECCCCCHHHH
Q ss_conf 27730266--65543-3588887653-------124660489974489999973001113202---31111157776789
Q gi|254780877|r 280 LHVLVGAG--KTDGA-MDASNLLKPS-------LARGELHCIGATTLDEYRKYIEKDPALARR---FQSLLVGEPTVTDT 346 (853)
Q Consensus 280 ~h~~~gaG--~~~g~-~Daan~LKP~-------LarG~l~~IgaTT~~Eyrk~iEkD~Al~RR---Fq~i~V~Eps~~~t 346 (853)
+..|--.. ++.|+ -.+--+|--. =.....++|.||.-.. .-||||-|- =.+|...=|+.-+-
T Consensus 257 idaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplpdrrqk 331 (408)
T KOG0727 257 IDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQK 331 (408)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC-----CCCHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 4567664124444631899999999997514767666558998327555-----66876628764344435779854665
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999978986
Q gi|254780877|r 347 ISILRGLKERY 357 (853)
Q Consensus 347 ~~iL~gl~~~y 357 (853)
--+...+.+++
T Consensus 332 rlvf~titskm 342 (408)
T KOG0727 332 RLVFSTITSKM 342 (408)
T ss_pred HHHHHHHHHCC
T ss_conf 22277543102
No 417
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.54 E-value=0.078 Score=33.86 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=27.7
Q ss_pred HHHHCCHHHHCCCC-CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 98628857726668-15862889989999999999999999998579899998899999997
Q gi|254780877|r 740 VRSAFKPEFLNRLD-EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSC 800 (853)
Q Consensus 740 l~~~f~peflnRid-~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~ 800 (853)
....|+||+++--. .+|-|||+....|.+.+.+-+..= ........++.++.|++
T Consensus 187 a~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE------~~~~~~~~~~~le~Ia~ 242 (490)
T pfam03215 187 AETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQE------GKLKSPKSDSKLEVICQ 242 (490)
T ss_pred HHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH------CCCCCCCCHHHHHHHHH
T ss_conf 786359888708896369868887889999999999985------76556752038999998
No 418
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.53 E-value=0.047 Score=35.64 Aligned_cols=40 Identities=35% Similarity=0.507 Sum_probs=27.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHC--CCCCHHHCCCEEEEEEHHHH
Q ss_conf 6689528874077799999998734--89984445743788731354
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIIN--GDIPESLKGKRLMALDMGAL 245 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~--~~vp~~l~~~~i~~ld~~~l 245 (853)
-..|||++|||||+-+=-||-+.+- |. +..-++++|.-..
T Consensus 196 vi~lvGPTGVGKTTTiAKLAa~~~l~~~~-----~~V~lIT~DtyRi 237 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGK-----KKVALITTDTYRI 237 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CCEEEEEECCCCH
T ss_conf 79997788875788999999999997389-----9679998077767
No 419
>PRK07004 replicative DNA helicase; Provisional
Probab=96.53 E-value=0.078 Score=33.86 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHH-CCCCCHHHCCC
Q ss_conf 10788644356998-72985333335789999999633677786-68952887407779999999873-48998444574
Q gi|254780877|r 159 DALKKYCRDLTEEA-RNGKLDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRII-NGDIPESLKGK 235 (853)
Q Consensus 159 ~~L~ky~~DLTe~A-r~GkLDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~-~~~vp~~l~~~ 235 (853)
+.+.++-..+.+.. +.+. ..+.|=..-+..+=.++..-.+.+ .++-|-||+||||++-.+|..++ +...| .
T Consensus 172 ~~l~~~~e~ie~~~~~~~~-~~~~Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~~g~~-----V 245 (460)
T PRK07004 172 PLLTQVVERIDTLYHTANP-SDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLP-----V 245 (460)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC-----E
T ss_conf 9999999999999961599-998538679388986523898775799973687642699999999998725886-----6
Q ss_pred EEEEEEHHHH
Q ss_conf 3788731354
Q gi|254780877|r 236 RLMALDMGAL 245 (853)
Q Consensus 236 ~i~~ld~~~l 245 (853)
-+|||.|++-
T Consensus 246 ~~FSLEMs~e 255 (460)
T PRK07004 246 AVFSMEMPGT 255 (460)
T ss_pred EEECCCCCHH
T ss_conf 9984779999
No 420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.53 E-value=0.0023 Score=46.36 Aligned_cols=160 Identities=22% Similarity=0.376 Sum_probs=80.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCC-CCCCCCC-CHHHHCCCCCCC----HHHCCCCHHCCCCCCCCCCHHHHC
Q ss_conf 6651289872678616889999999872377-6530022-447740345320----130477112035667742113221
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDD-ENSMIRI-DMSEYMEKHSVS----RLIGSPPGYVGYEEGGALTEAVRR 668 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~-~~~lir~-dMsey~e~~~vs----~LiGappGYvG~~~gg~Lte~vr~ 668 (853)
.+|.|=.|++||||+|||.+-=++=+++--. ...+|+| |==||..+|--| |=+|.--- -|. --|-.|+|+
T Consensus 124 ~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTIEDPIEyvh~~~~sli~QREvG~DT~--sF~--~ALraALRe 199 (350)
T TIGR01420 124 ERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITIEDPIEYVHKNKRSLINQREVGLDTL--SFA--NALRAALRE 199 (350)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCEEEEECCCCCCCHH--HHH--HHHHHHHCC
T ss_conf 3669938987688986789999999787403888825631773141047702454362467545--799--997684102
Q ss_pred CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHH
Q ss_conf 56410220214414989999999984045788799977830331559548512687640326799999999986288577
Q gi|254780877|r 669 HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEF 748 (853)
Q Consensus 669 ~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pef 748 (853)
-| -|||.=|+= ..+-.++=|..=+.|+| |+.-|...=-++=
T Consensus 200 DP-DvILiGE~R--D~ET~~~AL~AAETGHL------------------------------------V~gTLHTnsA~~t 240 (350)
T TIGR01420 200 DP-DVILIGEMR--DLETVELALTAAETGHL------------------------------------VFGTLHTNSAAKT 240 (350)
T ss_pred CC-CEEEEECCC--CHHHHHHHHHHHHHCCH------------------------------------HHHHHHHHHHHHH
T ss_conf 89-889982556--27899999987421315------------------------------------6766664238887
Q ss_pred HCCCCCEEECCCCCHHH-HHH-HHHHHHHHHHHHHHHC----CCE-----EEECHHHHHHHHH
Q ss_conf 26668158628899899-999-9999999999999857----989-----9998899999997
Q gi|254780877|r 749 LNRLDEIILFEKLRKED-MAK-IVRIQLGRVLSLIKER----NIS-----MDFDDQVIDWLSC 800 (853)
Q Consensus 749 lnRid~iv~F~~l~~~~-~~~-i~~~~l~~l~~~l~~~----~i~-----l~~~~~~~~~l~~ 800 (853)
+||| |=|-|....+ ++. ++...+.=+.|||..+ |-. +--||.+.++|-+
T Consensus 241 i~RI---id~FP~~~~~qiR~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~~Tpav~~lIre 300 (350)
T TIGR01420 241 IERI---IDVFPAEEQEQIRTQLAESLVAVISQRLLPKKNGGGRVLAVEILINTPAVRNLIRE 300 (350)
T ss_pred HHHH---HCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCHHHHHHHCC
T ss_conf 6777---42597756689999998767877000542233896258888752158789996028
No 421
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.52 E-value=0.046 Score=35.75 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 689528874077799999998734
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIIN 225 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~ 225 (853)
.++.|+||+|||.+.-.+|.....
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 899989999899999999999876
No 422
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=96.51 E-value=0.0026 Score=45.80 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=63.3
Q ss_pred CCCEEEE-EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEE
Q ss_conf 6512898-726786168899999998723776530022447740345320130477112035667742113221564102
Q gi|254780877|r 596 RPMGSFM-FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVV 674 (853)
Q Consensus 596 ~p~~~fl-f~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVi 674 (853)
+-.|+-| |+|+||.|||.+|.||.+.|+...=....+|- .-||.+=+.=+
T Consensus 16 ~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~LDG-----------------------------DnvR~gL~~dL 66 (187)
T TIGR00455 16 KHRGVVLWLTGLSGSGKSTIANALEKKLEKKGYRVYVLDG-----------------------------DNVRHGLNKDL 66 (187)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECC-----------------------------CEEECCCCCCC
T ss_conf 7973898511688563579999999999966974999758-----------------------------63424778888
Q ss_pred EEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEE------CCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHH
Q ss_conf 2021441498999999998404578879997783------0331559548512687640326799999999986288577
Q gi|254780877|r 675 LFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVD------FRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEF 748 (853)
Q Consensus 675 l~DEiEKah~~v~~~llqild~G~ltd~~G~~v~------f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pef 748 (853)
=|.+=|. +-+-|.|. -+|++|++||=+ .-+...++.+.+.+.++ .-+|
T Consensus 67 GFS~~DR-------------------~eNIRRigEVa~L~~~~G~i~ltsfI------SPyR~~R~~vR~~~~~~-Gl~F 120 (187)
T TIGR00455 67 GFSEEDR-------------------KENIRRIGEVAKLLVRNGVIVLTSFI------SPYRADRQMVRELIEEG-GLEF 120 (187)
T ss_pred CCCHHHH-------------------CCCCCEEHHHHHHHHHCCEEEEEEEE------CCCHHHHHHHHHHHHCC-CEEE
T ss_conf 8885670-------------------56883532646777647938998421------77666789998875405-7368
Q ss_pred HCCCCCEEECCCCCHHHHH
Q ss_conf 2666815862889989999
Q gi|254780877|r 749 LNRLDEIILFEKLRKEDMA 767 (853)
Q Consensus 749 lnRid~iv~F~~l~~~~~~ 767 (853)
-||++=-||.-.+-+
T Consensus 121 ----~Evfv~~PL~vcE~R 135 (187)
T TIGR00455 121 ----IEVFVKCPLEVCEQR 135 (187)
T ss_pred ----EEEECCCCHHHHCCC
T ss_conf ----997217886863268
No 423
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.50 E-value=0.0074 Score=42.17 Aligned_cols=94 Identities=24% Similarity=0.408 Sum_probs=59.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCC-----CCHHHHCCCCCEE
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774-----2113221564102
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGA-----LTEAVRRHPYQVV 674 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~-----Lte~vr~~P~sVi 674 (853)
.+.++||.|.|||.+.|.|+..+.-+... ++++... -.+|+..=.||+ +.-++-.+| .|+
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G~~~~~~G~-i~~~~~~-------------~i~y~~QLSgGqkqr~~la~al~~~p-~il 92 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLENP-NLL 92 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCCC-------------EEEEEHHCCHHHHHHHHHHHHHCCCC-CEE
T ss_conf 99999899984999999984898898509-9999960-------------89987007999999999999972599-899
Q ss_pred EEHHHHHC-CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCH
Q ss_conf 20214414-98999999998404578879997783033155954851
Q gi|254780877|r 675 LFDEIEKA-HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNL 720 (853)
Q Consensus 675 l~DEiEKa-h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~ 720 (853)
++||--.. .++....+.+.+.+ ++.|+|+-|.++
T Consensus 93 iLDEPt~~LD~~~~~~i~~~l~~------------~~~tii~vsHd~ 127 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKE------------YPGTVILVSHDR 127 (144)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH------------CCCEEEEEECCH
T ss_conf 99577555899999999999997------------099999996798
No 424
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.50 E-value=0.0028 Score=45.64 Aligned_cols=85 Identities=31% Similarity=0.511 Sum_probs=45.1
Q ss_pred CCCEEEEEECCCCHHHHH-HHHHHHHHHCCC-CC--CCCCCCH---------HHHCCCCCCCHHHCCCCHHCCCCCCCCC
Q ss_conf 651289872678616889-999999872377-65--3002244---------7740345320130477112035667742
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTE-LVKSLARLLFDD-EN--SMIRIDM---------SEYMEKHSVSRLIGSPPGYVGYEEGGAL 662 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTe-lak~la~~lf~~-~~--~lir~dM---------sey~e~~~vs~LiGappGYvG~~~gg~L 662 (853)
+|-+++.|+||||||||. |||.=|.+.... .. ++|+.|- +-| +++.|-|=--| | ..-.|
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Y------a~im~vp~~vv-~-~~~el 272 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTY------ADIMGVPLEVV-Y-SPKEL 272 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH------HHHHCCCEEEE-C-CHHHH
T ss_conf 4685799989988758879999999997532576068997144115289999999------99869955996-3-99999
Q ss_pred CHHHHC-CCCCEEEEHHHHHCCHHHHH
Q ss_conf 113221-56410220214414989999
Q gi|254780877|r 663 TEAVRR-HPYQVVLFDEIEKAHSDVHN 688 (853)
Q Consensus 663 te~vr~-~P~sVil~DEiEKah~~v~~ 688 (853)
-+++.. +-+-|||.|-+-..|.|...
T Consensus 273 ~~ai~~l~~~d~ILVDTaGrs~~D~~~ 299 (407)
T COG1419 273 AEAIEALRDCDVILVDTAGRSQYDKEK 299 (407)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 999998531888999689988337899
No 425
>PRK13947 shikimate kinase; Provisional
Probab=96.49 E-value=0.03 Score=37.18 Aligned_cols=138 Identities=19% Similarity=0.279 Sum_probs=62.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHHHCCCCEEE
Q ss_conf 866895288740777999999987348--9984445743788731354217454202--454589999998607997699
Q gi|254780877|r 200 NNPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIAGAKFRGE--FEERLKSLLCEIRSEDGEIIL 275 (853)
Q Consensus 200 ~n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--~e~r~~~i~~~~~~~~~~~il 275 (853)
.|.+|||-||+|||+|-.-||+++--. |...... +-....+..+.+- .|| |-+.=..++.++...+ +.|
T Consensus 2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie--~~~g~sI~eIf~~---~GE~~FR~~E~~~l~~~~~~~-~~V- 74 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIE--KMAGMTVSEIFEK---DGEVRFRSLEKAAVRKAARLK-NLV- 74 (171)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHCCCCHHHHHHH---HCHHHHHHHHHHHHHHHCCCC-CEE-
T ss_conf 858997999998899999999997969898749999--8829988999998---489999999999999740368-979-
Q ss_pred EECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 96362773026665543358888765312466048997448999997300111320231111157776789999999789
Q gi|254780877|r 276 FIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKE 355 (853)
Q Consensus 276 fide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~ 355 (853)
|..|++. -++..|+ + .|.+..+-+-=-+.++...+-+.+++ .|. ..-.+...+.-..++..-.+
T Consensus 75 --------istGGG~-v~~~~n~-~-~l~~~g~vi~L~~~~~~l~~Rl~~~~--~RP---ll~~~~~~~~l~~l~~~R~~ 138 (171)
T PRK13947 75 --------IATGGGV-VLNPENI-V-QLRKNGVLICLVARPEVILRRIKKKK--DRP---LLMVGNPEERIRELLKEREP 138 (171)
T ss_pred --------EECCCCC-CCCHHHH-H-HHHHCCEEEEECCCHHHHHHHHHCCC--CCC---CCCCCCHHHHHHHHHHHHHH
T ss_conf --------9789850-0699999-9-99968989997399999999972899--999---79899879999999999999
Q ss_pred HHHHH
Q ss_conf 86541
Q gi|254780877|r 356 RYEQH 360 (853)
Q Consensus 356 ~yE~~ 360 (853)
.|+..
T Consensus 139 ~Y~~A 143 (171)
T PRK13947 139 FYRFA 143 (171)
T ss_pred HHHHC
T ss_conf 99976
No 426
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.47 E-value=0.1 Score=32.88 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=35.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8654149610158999998633320245767477899999999987541022
Q gi|254780877|r 356 RYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDT 407 (853)
Q Consensus 356 ~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~ 407 (853)
.=+.-..|.++|+.+.+++.++.++=-+-.= --|-++-.|+|...+....
T Consensus 187 Ar~~L~~V~i~d~~~~~l~~~a~~~gv~g~R--a~i~~~raArA~AAl~Gr~ 236 (584)
T PRK13406 187 ARARLAAVRVPPEAIEALCAAAAALGIASLR--APLLALRAARAAAALAGRT 236 (584)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHCCCC
T ss_conf 9986786666999999999999983998620--9999999999999974999
No 427
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.44 E-value=0.037 Score=36.46 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=68.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHC--CCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 66895288740777999999987348--998444574378873135421--74542024545899999986079976999
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIA--GAKFRGEFEERLKSLLCEIRSEDGEIILF 276 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~a--g~~~rg~~e~r~~~i~~~~~~~~~~~ilf 276 (853)
|.+|||-||+|||++-.-||+++-.. |....+. +-+..++..+.. |-.|=-+.|.+ ++.++...+ ++|
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie--~~~g~si~eif~~~Ge~~FR~~E~~---~l~~~~~~~-~~V-- 72 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIE--QRAGMSIPEIFAEEGEEGFRELERE---VLLLLLTKE-NAV-- 72 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHH--HHHCCCHHHHHHHCCHHHHHHHHHH---HHHHHHCCC-CEE--
T ss_conf 98998899998899999999997989796859999--9949999999987493878999999---999985689-859--
Q ss_pred ECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 63627730266655433588887653124660489974489999973001113202311111577767899999997898
Q gi|254780877|r 277 IDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKER 356 (853)
Q Consensus 277 ide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~ 356 (853)
|..|++- -++-.|+ ..|....+-+-=-+.+++..+.+..++ .| |+. ..++.++-..++..-++.
T Consensus 73 -------Is~GGG~-v~~~~~~--~~l~~~~~vI~L~~~~~~l~~Rl~~~~--~R---Pll-~~~~~~~l~~l~~~R~~~ 136 (154)
T cd00464 73 -------IATGGGA-VLREENR--RLLLENGIVVWLDASPEELLERLARDK--TR---PLL-QDEDPERLRELLEEREPL 136 (154)
T ss_pred -------EECCCCC-CCCHHHH--HHHHHCCEEEEEECCHHHHHHHHHCCC--CC---CCC-CCCCHHHHHHHHHHHHHH
T ss_conf -------9738973-3689999--999957908999579999999960799--99---988-899999999999999999
Q ss_pred HHHHCCCCC
Q ss_conf 654149610
Q gi|254780877|r 357 YEQHHKVRI 365 (853)
Q Consensus 357 yE~~H~V~i 365 (853)
|++.-.+.+
T Consensus 137 Y~~~Ad~~i 145 (154)
T cd00464 137 YREVADLTI 145 (154)
T ss_pred HHHHCCEEE
T ss_conf 998799999
No 428
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.44 E-value=0.0038 Score=44.56 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=35.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 2898726786168899999998723776530022447740
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
.++.|+|.||.|||.||++|.+.|+....+.+.+|+-++-
T Consensus 3 ~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R 42 (157)
T pfam01583 3 CTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVR 42 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 8999889899999999999999999759977997688775
No 429
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.41 E-value=0.0043 Score=44.07 Aligned_cols=44 Identities=27% Similarity=0.282 Sum_probs=37.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 665128987267861688999999987237765300224477403
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME 639 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e 639 (853)
++|. ++.|+|.||+|||.+|++|...|+....+.+.+|+-++-+
T Consensus 5 ~kg~-viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR~ 48 (176)
T PRK05541 5 PNGY-VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 8867-9997899999899999999999997599779988689998
No 430
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.37 E-value=0.11 Score=32.77 Aligned_cols=113 Identities=19% Similarity=0.325 Sum_probs=68.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 89999999633677786689528874077799999998734899844457437887313542174542024545899999
Q gi|254780877|r 185 DEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLC 264 (853)
Q Consensus 185 ~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~ 264 (853)
.++...++..- +.+.|.++.|..|.|||++...|+..|-.. -||+.+.= ..|=
T Consensus 147 ~~~~~fL~~aV-~~r~NilI~G~TgSGKTTll~aL~~~ip~~--------eRiitIED-----------t~EL------- 199 (332)
T PRK13900 147 KKIKEFLEHAV-ISKKNIIISGGTSTGKTTFTNAALREIPAI--------ERLITVED-----------AREI------- 199 (332)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCCC--------CCEEEECC-----------CHHH-------
T ss_conf 57999999998-648719998888988999999998358953--------53566314-----------0663-------
Q ss_pred HHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHH
Q ss_conf 98607997699963627730266655433588887653124660489974489999973001113202311111577767
Q gi|254780877|r 265 EIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVT 344 (853)
Q Consensus 265 ~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~ 344 (853)
.+...+..+-|+..+ .|.+.+.++..++|+-+| --|-..|.|.|---.
T Consensus 200 ~l~~~pn~v~l~~~~------~~~g~~~vt~~~Ll~~aL--------------------------R~rPDRIivGEvRG~ 247 (332)
T PRK13900 200 VLSSHPNRVHLLASK------GGQGRAKVTTQDLIEACL--------------------------RLRPDRIIVGELRGA 247 (332)
T ss_pred CCCCCCCEEEEEECC------CCCCCCEECHHHHHHHHH--------------------------CCCCCEEEECCCCHH
T ss_conf 566688889999716------888866086999999975--------------------------689975844555719
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999997898
Q gi|254780877|r 345 DTISILRGLKER 356 (853)
Q Consensus 345 ~t~~iL~gl~~~ 356 (853)
++..+|+.+..-
T Consensus 248 EA~~~l~A~nTG 259 (332)
T PRK13900 248 EAFSFLRAINTG 259 (332)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999769
No 431
>PRK08506 replicative DNA helicase; Provisional
Probab=96.37 E-value=0.12 Score=32.42 Aligned_cols=81 Identities=19% Similarity=0.351 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEE
Q ss_conf 107886443569987298533333578999999963367778668-9528874077799999998734899844457437
Q gi|254780877|r 159 DALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPV-LIGDPGVGKTAIIEGLASRIINGDIPESLKGKRL 237 (853)
Q Consensus 159 ~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~-lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i 237 (853)
+.+..+-..+-+....|.- .+.|=..-...+=.++..-.+.+-+ +-|-||+||||++-.+|..++....| .-+
T Consensus 153 ~~~~~~~~~i~~~~~~~~~-~~~Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~~~~~-----V~~ 226 (473)
T PRK08506 153 EVIKSTMEHIKKQKRLGNK-DIIGLDTGFKQLNKMTKGFNKGDLIIIAARPSMGKTTLVLNMVLKALNQGKG-----VAF 226 (473)
T ss_pred HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC-----EEE
T ss_conf 9999999999999855899-8534778808788872699856279995079986789999999999965996-----589
Q ss_pred EEEEHHHH
Q ss_conf 88731354
Q gi|254780877|r 238 MALDMGAL 245 (853)
Q Consensus 238 ~~ld~~~l 245 (853)
|||.|+.-
T Consensus 227 FSLEMs~~ 234 (473)
T PRK08506 227 FSLEMPAE 234 (473)
T ss_pred EECCCCHH
T ss_conf 82247999
No 432
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.32 E-value=0.0095 Score=41.31 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=15.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 28987267861688999999987237
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFD 624 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~ 624 (853)
.++++.+|||.|||..+-..+..++.
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98899899996099999999999863
No 433
>KOG3347 consensus
Probab=96.26 E-value=0.0062 Score=42.82 Aligned_cols=137 Identities=20% Similarity=0.411 Sum_probs=74.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
..|.+|.+|+|||.+|.+||+.+ .+--|+||.|..... =|-||||+ |---+|||
T Consensus 9 NILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vkEn~---------l~~gyDE~-----------y~c~i~DE- 62 (176)
T KOG3347 9 NILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVKENN---------LYEGYDEE-----------YKCHILDE- 62 (176)
T ss_pred CEEEECCCCCCCHHHHHHHHHHH-----CCCEEEHHHHHHHHC---------CHHCCCCC-----------CCCCCCCH-
T ss_conf 87986799988025999999973-----985674556776611---------02102322-----------36754567-
Q ss_pred HHCCHHHHHHHHH-HHHCCEEECCCCCEE---ECCCCEEEECCC---HHHHHHHCCH--H--------HHHHHHHHHHHH
Q ss_conf 4149899999999-840457887999778---303315595485---1268764032--6--------799999999986
Q gi|254780877|r 680 EKAHSDVHNILLQ-VLDDGRLTDSQGRTV---DFRNTLIIMTSN---LGAEYLIEDG--D--------SVHDKVMGIVRS 742 (853)
Q Consensus 680 EKah~~v~~~llq-ild~G~ltd~~G~~v---~f~n~iii~TsN---~G~~~~~~~~--~--------~~~~~~~~~l~~ 742 (853)
..|++-|-. +...|.+.|-+|--. -.=+.++++|+- +=.+.-...+ . ++-..+.++.+.
T Consensus 63 ----dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~e 138 (176)
T KOG3347 63 ----DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARE 138 (176)
T ss_pred ----HHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHH
T ss_conf ----8999888898756884886005676501135579999468459999999758888887651015899999999998
Q ss_pred HCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 288577266681586288998999999999
Q gi|254780877|r 743 AFKPEFLNRLDEIILFEKLRKEDMAKIVRI 772 (853)
Q Consensus 743 ~f~peflnRid~iv~F~~l~~~~~~~i~~~ 772 (853)
.|.|. =++-...=+.+++..-+..
T Consensus 139 Sy~~~------iV~eL~s~~~Eem~~ni~r 162 (176)
T KOG3347 139 SYSPK------IVVELQSETKEEMESNISR 162 (176)
T ss_pred HCCCC------CEEECCCCCHHHHHHHHHH
T ss_conf 71874------2133476778999998999
No 434
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0085 Score=41.68 Aligned_cols=180 Identities=19% Similarity=0.352 Sum_probs=112.2
Q ss_pred HHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH------------H
Q ss_conf 9996336--7778668952887407779999999873489984445743788731354217454202------------4
Q gi|254780877|r 190 AIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE------------F 255 (853)
Q Consensus 190 ~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~------------~ 255 (853)
+-++|.. =..+-.++=||||+||+++.=-+|.++++.. +++.+.---=..-.+.|.+ -
T Consensus 82 ldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--------~vLYVsGEES~~QiklRA~RL~~~~~~l~l~a 153 (456)
T COG1066 82 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--------KVLYVSGEESLQQIKLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC--------CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEH
T ss_conf 8765367723661799736898779899999999987059--------57999677678999999998289964557741
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC--CCCCCCC-----HHHHHHHHHCCCCE-EEEEEECHHHHHHHHHCCH
Q ss_conf 54589999998607997699963627730266--6554335-----88887653124660-4899744899999730011
Q gi|254780877|r 256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAG--KTDGAMD-----ASNLLKPSLARGEL-HCIGATTLDEYRKYIEKDP 327 (853)
Q Consensus 256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG--~~~g~~D-----aan~LKP~LarG~l-~~IgaTT~~Eyrk~iEkD~ 327 (853)
|-.+..|+.++.+. .+-++.||-|+|+.-.. ++.||+. ++.+..=+=.+|-- =++| |+.||+
T Consensus 154 Et~~e~I~~~l~~~-~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG---------HVTKeG 223 (456)
T COG1066 154 ETNLEDIIAELEQE-KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG---------HVTKEG 223 (456)
T ss_pred HCCHHHHHHHHHHC-CCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE---------EECCCC
T ss_conf 12899999999854-99789996541230263357998589999999999999987597399998---------882466
Q ss_pred HH------HHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 13------20231111157776789999999789865414961---01589999986333202457674
Q gi|254780877|r 328 AL------ARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVR---ISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 328 Al------~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~---i~d~al~~av~ls~rYi~~r~lP 387 (853)
++ +---..|.-=|-+....+.|||+.|-||.....+- .+++-|....+-|.-|+..|.-+
T Consensus 224 ~IAGPrvLEHmVDtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~ 292 (456)
T COG1066 224 AIAGPRVLEHMVDTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQ 292 (456)
T ss_pred CCCCCHHEEEEEEEEEEEECCCCCCEEEEEHHCCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCC
T ss_conf 326840043653689998305777556500321367765532688984388468038278674226778
No 435
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=96.26 E-value=0.014 Score=39.93 Aligned_cols=137 Identities=26% Similarity=0.341 Sum_probs=91.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH------HCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHH------
Q ss_conf 66895288740777999999987------348998444574378873135421745420245458999999860------
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRI------INGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRS------ 268 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i------~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~------ 268 (853)
.+=|.||+|.|||+++-.+|... +.|+ ..+-+=|+=.=.+|..++-+.-+=+.++.+.=..
T Consensus 23 PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd-------~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~~d~~~~~W~ 95 (265)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVVLINGD-------AELTTSDLVGSYAGYTRKKVVDQFIHNVVKLEDIVRQNWV 95 (265)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEECC-------CCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCC
T ss_conf 667447888556899999997368968998658-------2326544231546752222320121113425122002667
Q ss_pred --------CCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC------------------CEEEEEEECHHHHHHH
Q ss_conf --------79976999636277302666554335888876531246------------------6048997448999997
Q gi|254780877|r 269 --------EDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG------------------ELHCIGATTLDEYRKY 322 (853)
Q Consensus 269 --------~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG------------------~l~~IgaTT~~Eyrk~ 322 (853)
.+| -=|.-||+- +|- --+-|+|-..|..| ++|+|=+.=|.||-=-
T Consensus 96 D~rLt~Av~eG-~TLVYdEF~------Rsk--P~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSNp~EYAGV 166 (265)
T TIGR02640 96 DNRLTLAVREG-FTLVYDEFT------RSK--PETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSNPVEYAGV 166 (265)
T ss_pred CCHHHHHHHCC-CEEEECCCC------CCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCCCCCC
T ss_conf 83578997569-727664757------886--204565675555232158887877872257887024631487010576
Q ss_pred HHCCHHHHHCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 3001113202311111577767899999997
Q gi|254780877|r 323 IEKDPALARRFQSLLVGEPTVTDTISILRGL 353 (853)
Q Consensus 323 iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl 353 (853)
.+.--||.-|.-.|.+.+|+.+.-++|++..
T Consensus 167 h~~QDALlDRL~ti~~D~~D~~~e~ai~~~~ 197 (265)
T TIGR02640 167 HETQDALLDRLVTISMDYPDEDTETAILRAK 197 (265)
T ss_pred CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 7716677664400457854447899999986
No 436
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.26 E-value=0.059 Score=34.85 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=20.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 786689528874077799999998734
Q gi|254780877|r 199 KNNPVLIGDPGVGKTAIIEGLASRIIN 225 (853)
Q Consensus 199 k~n~~lvGe~GvGKtaive~la~~i~~ 225 (853)
.+-+++||--|+|||+-+--||..+.+
T Consensus 97 P~Vim~vGlqGsGKTTT~aKLA~~~kk 123 (433)
T PRK00771 97 PQTILLVGLQGSGKTTTAAKLARYFQK 123 (433)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 858999737889789999999999997
No 437
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.13 Score=31.93 Aligned_cols=107 Identities=25% Similarity=0.413 Sum_probs=67.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHCCCCCCCHH-HCCCCHHCC------CCCCC-----
Q ss_conf 65128987267861688999999987237765---3002244774034532013-047711203------56677-----
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDEN---SMIRIDMSEYMEKHSVSRL-IGSPPGYVG------YEEGG----- 660 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~---~lir~dMsey~e~~~vs~L-iGappGYvG------~~~gg----- 660 (853)
-| -.+||.||.|+||+.+|..+|+.|+-... .--.-.+... -.+ -|+-|.|.- .++.|
T Consensus 20 l~-HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC------~~~~~g~HPD~~~i~p~~~~~~~g~~~~~ 92 (325)
T PRK08699 20 RP-NAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSC------HLFGQGSHPDFYEITPLADEPENGRKLLQ 92 (325)
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH------HHHHCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 01-179757999978999999999998289998889989888889------99865999996885134453001665566
Q ss_pred CCCHHHHC-------C----CCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCH
Q ss_conf 42113221-------5----641022021441498999999998404578879997783033155954851
Q gi|254780877|r 661 ALTEAVRR-------H----PYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNL 720 (853)
Q Consensus 661 ~Lte~vr~-------~----P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~ 720 (853)
+-++.||. . ++-|+++|+.|+.+..-.|.||..|+|-- .||+||++|+-
T Consensus 93 I~idqiR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp-----------~~~~fiL~t~~ 152 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPP-----------PQVVFLLVSHA 152 (325)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC-----------CCEEEEEEECC
T ss_conf 7699999999997108656894699985777758999999999841788-----------88489998798
No 438
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.24 E-value=0.02 Score=38.62 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=50.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCCC-CHHHHCC--CCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEE
Q ss_conf 89872678616889999999872377--6530022-4477403--45320130477112035667742113221564102
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDD--ENSMIRI-DMSEYME--KHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVV 674 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~--~~~lir~-dMsey~e--~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVi 674 (853)
+++..|+||+|||.+.++|..++... +..++.+ |-.|.+= +|.+ .|..+ +.|... -.|..++|.+|.-||
T Consensus 146 nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtIEDt~EL~~~~~n~v-~l~~~--~~v~~~--~Ll~~aLRmrPDRIi 220 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAV-LLHTS--DTVDMA--RLLKSTMRLRPDRII 220 (323)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCEE-EEECC--CCCCHH--HHHHHHHCCCCCEEE
T ss_conf 6899917777568999999986402893233999457501146788777-87516--986999--999997446997588
Q ss_pred EEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 202144149899999999840457
Q gi|254780877|r 675 LFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 675 l~DEiEKah~~v~~~llqild~G~ 698 (853)
+ -|+- .++.| -|||.+..|+
T Consensus 221 v-GEvR--G~EA~-~~L~A~nTGH 240 (323)
T PRK13833 221 V-GEVR--DGAAL-TLLKAWNTGH 240 (323)
T ss_pred E-ECCC--CHHHH-HHHHHHHCCC
T ss_conf 8-3006--59999-9999982799
No 439
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.24 E-value=0.0048 Score=43.69 Aligned_cols=113 Identities=19% Similarity=0.320 Sum_probs=52.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCC--CCCCCCH---HHHCCCCCCCHHHCCCCHHCCCCCC---CCCCHHH---HC
Q ss_conf 8987267861688999999987237765--3002244---7740345320130477112035667---7421132---21
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDEN--SMIRIDM---SEYMEKHSVSRLIGSPPGYVGYEEG---GALTEAV---RR 668 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~--~lir~dM---sey~e~~~vs~LiGappGYvG~~~g---g~Lte~v---r~ 668 (853)
+++|+||||||||.++-.||..+-.... .+|..|- .-.-+=-..++++|.|- |..+... -.+-+++ +.
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~-~~~~~~~d~~~~~~~~l~~~~~ 81 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPV-FGSGTGSDPAAVAFDAVEKAKA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHHHHH
T ss_conf 999989999988999999999999779928999758776889999999998639817-8148777878999999999884
Q ss_pred CCCCEEEEHHHHHCCHH--HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 56410220214414989--99999998404578879997783033155954851268
Q gi|254780877|r 669 HPYQVVLFDEIEKAHSD--VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 669 ~P~sVil~DEiEKah~~--v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
+.+.+||.|--=..|.+ -..-+-++++.. .--++++++.++.|.+
T Consensus 82 ~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~----------~~~~~~LVl~a~~~~~ 128 (196)
T pfam00448 82 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVI----------APDEVLLVLDATTGQN 128 (196)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHC----------CCCCEEEEEECCCCCC
T ss_conf 6899999989998747677899999998522----------8730289985677821
No 440
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.24 E-value=0.016 Score=39.46 Aligned_cols=128 Identities=19% Similarity=0.334 Sum_probs=59.4
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH--------HHC---C------C
Q ss_conf 9999996336777866895288740777999999987348998444574378873135--------421---7------4
Q gi|254780877|r 187 MRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA--------LIA---G------A 249 (853)
Q Consensus 187 I~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~--------l~a---g------~ 249 (853)
..++++.|.. .+.+||+|+||.|||+-|- +.+.... .+.+ +|+.+-.-. =|| | -
T Consensus 10 ~~~i~~~l~~--~~~~vl~a~tGsGKtTqvP---~~ll~~~---~~~g-~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~V 80 (812)
T PRK11664 10 LPELLTALKT--APQVLLKAPTGAGKSTWLP---LQLLQQG---GING-KIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHH--CCEEEEEECCCCCHHHHHH---HHHHHCC---CCCC-CEEEECCHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 9999999997--9979999089999899999---9999646---8899-3899388399999999999997299999867
Q ss_pred CCCCHHHHHHH-----------HHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHH-HHHHHHH--CCCCEEEEE
Q ss_conf 54202454589-----------999998607---997699963627730266655433588-8876531--246604899
Q gi|254780877|r 250 KFRGEFEERLK-----------SLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDAS-NLLKPSL--ARGELHCIG 312 (853)
Q Consensus 250 ~~rg~~e~r~~-----------~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daa-n~LKP~L--arG~l~~Ig 312 (853)
.|+=-||.+.. -++.++... .+--.+.|||+|-= +- ..|.. -+++-.. -|-+|++|-
T Consensus 81 GY~vR~e~~~s~~Tri~~~T~GiLlr~l~~dp~L~~~~~vI~DE~HER-----~l-~~Dl~l~l~~~~~~~~r~dLklvv 154 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHER-----SL-QADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EEEECCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCC-----CH-HHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 578256778899857999755899999724977677888999575468-----75-189999999999986189828999
Q ss_pred EE---CHHHHHHHHHCCHHH
Q ss_conf 74---489999973001113
Q gi|254780877|r 313 AT---TLDEYRKYIEKDPAL 329 (853)
Q Consensus 313 aT---T~~Eyrk~iEkD~Al 329 (853)
.+ ..+-|.+||..-+.+
T Consensus 155 MSATld~~~~~~~~~~~~~i 174 (812)
T PRK11664 155 MSATLDNDRLQQLLPDAPYI 174 (812)
T ss_pred ECCCCCHHHHHHHCCCCCEE
T ss_conf 84788848899758999889
No 441
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.23 E-value=0.058 Score=34.92 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 333357899999996336777866895288740777999999
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLA 220 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la 220 (853)
.+|-|+.=++++-+...+| =.++.+++|-|||+++-.++
T Consensus 15 ~~v~R~rL~~~L~~~~~~~---l~lv~APaG~GKTtl~a~w~ 53 (903)
T PRK04841 15 HTVVRERLLAKLSGANNYR---LVLVRSPAGYGKTTLASQWA 53 (903)
T ss_pred CCCCCHHHHHHHHHHCCCC---EEEEECCCCCCHHHHHHHHH
T ss_conf 8255477999998515899---79997799988999999998
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.23 E-value=0.085 Score=33.56 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=19.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 77866895288740777999999987348
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIING 226 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~ 226 (853)
..+-.++.|+||.|||.+...+++-..++
T Consensus 23 ~gs~~li~G~~GtGKsi~~~~~~~~~l~~ 51 (230)
T PRK08533 23 FGSIILIEGDESTGKSILSQRLAYGFLQN 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 98489998689987899999999999878
No 443
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.20 E-value=0.019 Score=38.88 Aligned_cols=70 Identities=24% Similarity=0.543 Sum_probs=49.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 866895288740777999999987348998444574378873135421745--420245458999999860799769996
Q gi|254780877|r 200 NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAK--FRGEFEERLKSLLCEIRSEDGEIILFI 277 (853)
Q Consensus 200 ~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~--~rg~~e~r~~~i~~~~~~~~~~~ilfi 277 (853)
.+-++.|+||+|||-++-.+|..+.. +++.|+-..+..|+.--+ | ++=+..-..+++.+.+.+ .|.|
T Consensus 97 ~gLlF~G~~GTGKThLA~aIan~Li~-------~G~sVlf~t~~dLl~~lr~t~-~~~~~~e~~~l~~l~~~d---LLIi 165 (242)
T PRK07952 97 ASFIFSGKPGTGKNHLAAAICNELLL-------RGKSVLIITVADIMSAMKDTF-RNSETSEEQLLNDLSNVD---LLVI 165 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHH-HCCCCCHHHHHHHHHCCC---EEEE
T ss_conf 71799789999789999999999998-------799499977999999999998-068756999999863189---8987
Q ss_pred CCH
Q ss_conf 362
Q gi|254780877|r 278 DEL 280 (853)
Q Consensus 278 de~ 280 (853)
||+
T Consensus 166 Ddl 168 (242)
T PRK07952 166 DEI 168 (242)
T ss_pred ECC
T ss_conf 301
No 444
>KOG1514 consensus
Probab=96.19 E-value=0.14 Score=31.73 Aligned_cols=180 Identities=19% Similarity=0.267 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-----CCCCCCCEEEECCCCCCHHHHHHHHHHHH----HCCCCC
Q ss_conf 107886443569987298533333578999999963-----36777866895288740777999999987----348998
Q gi|254780877|r 159 DALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVL-----SRRTKNNPVLIGDPGVGKTAIIEGLASRI----INGDIP 229 (853)
Q Consensus 159 ~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL-----~r~~k~n~~lvGe~GvGKtaive~la~~i----~~~~vp 229 (853)
..|+++--.|.-.+.... +=|||.|-.++-.-+ .+-.-.-.-+-|-||+|||+.|.++..-+ .++++|
T Consensus 380 S~l~~ara~Lhls~vp~s---LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p 456 (767)
T KOG1514 380 SELSKARARLHLSAVPES---LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP 456 (767)
T ss_pred HHHHHHHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCC
T ss_conf 378999998677745421---44146889999999997627777740799846999883212999999999877505789
Q ss_pred HHHCCCEEEEEEHHHHHC-------------CCCCCCHHHHHHHHHHHHHH---HCCCCEEEEECCHHHHCCCCCCCCCC
Q ss_conf 444574378873135421-------------74542024545899999986---07997699963627730266655433
Q gi|254780877|r 230 ESLKGKRLMALDMGALIA-------------GAKFRGEFEERLKSLLCEIR---SEDGEIILFIDELHVLVGAGKTDGAM 293 (853)
Q Consensus 230 ~~l~~~~i~~ld~~~l~a-------------g~~~rg~~e~r~~~i~~~~~---~~~~~~ilfide~h~~~gaG~~~g~~ 293 (853)
++.- +++|...|.. |-+..+ ..-+..+-.... .....+++.|||+..|++ .. -
T Consensus 457 ~f~y----veINgm~l~~~~~~Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt--r~---Q 525 (767)
T KOG1514 457 KFDY----VEINGLRLASPREIYEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVT--RS---Q 525 (767)
T ss_pred CCCE----EEECCEEECCHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHC--CC---H
T ss_conf 8607----98714461588999999999755574307--788999986541678787877999635787735--20---9
Q ss_pred C-HHHHHH-HHHCCCCEEEEEE-ECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHH
Q ss_conf 5-888876-5312466048997-448999997300111320231111157776789999999
Q gi|254780877|r 294 D-ASNLLK-PSLARGELHCIGA-TTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRG 352 (853)
Q Consensus 294 D-aan~LK-P~LarG~l~~Iga-TT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~g 352 (853)
| .=|+++ |++-...|-+||. -|.+==.+.+..-...-=-|+.|.-.+-+.++-.+|+..
T Consensus 526 dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~ 587 (767)
T KOG1514 526 DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISA 587 (767)
T ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCEEEECCCCCHHHHHHHHHH
T ss_conf 88977740776789866999951656477988543112330650551377889999999998
No 445
>PRK10490 sensor protein KdpD; Provisional
Probab=96.17 E-value=0.15 Score=31.65 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=47.3
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66681586288998999999999999999999857989999889999999708982206215799999873349999997
Q gi|254780877|r 750 NRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVL 829 (853)
Q Consensus 750 nRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il 829 (853)
.|++.=-.--.+...++..++...+..+...+..+.+.+.+.+..... ..-+. .|++-+.+.|.+.+-
T Consensus 725 sRle~G~l~l~~~~~~l~evv~~al~~~~~~~~~~~i~v~~~~~~~~v--------~~D~~----lleQVL~NLl~NAiK 792 (895)
T PRK10490 725 ARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSQHPINLSLPEPLTLI--------HVDGP----LFERVLINLLENAVK 792 (895)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEE--------EECHH----HHHHHHHHHHHHHHH
T ss_conf 876369976646420699999999999986612696799956987069--------87899----999999999999998
Q ss_pred CCCCCCCCEEEEEE--ECCEEEEEE
Q ss_conf 08688978899999--899489897
Q gi|254780877|r 830 SQTISDGDSIEVFV--DDDNLNFRV 852 (853)
Q Consensus 830 ~~~~~~g~~i~i~~--~~~~~~~~~ 852 (853)
.. ++|..|.|.. +++.+.++|
T Consensus 793 yt--p~~~~I~v~a~~~~~~v~i~V 815 (895)
T PRK10490 793 YA--GAQAEIGIDAHVEGENLQLDV 815 (895)
T ss_pred HC--CCCCEEEEEEEEECCEEEEEE
T ss_conf 58--999709999999799999999
No 446
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=96.16 E-value=0.017 Score=39.29 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=22.0
Q ss_pred HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99963367778668952887407779999999
Q gi|254780877|r 190 AIQVLSRRTKNNPVLIGDPGVGKTAIIEGLAS 221 (853)
Q Consensus 190 ~~~iL~r~~k~n~~lvGe~GvGKtaive~la~ 221 (853)
+.+.+.+.++=.++++|++|||||+++..+..
T Consensus 5 ~~~~~~~~k~~Ki~llG~~~vGKTsll~~~~~ 36 (174)
T pfam00025 5 LLKLLGLNKEMRILILGLDNAGKTTILYKLKL 36 (174)
T ss_pred HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 99985789666999999999988999999954
No 447
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.15 E-value=0.1 Score=32.97 Aligned_cols=194 Identities=20% Similarity=0.240 Sum_probs=88.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH---HCCCCHH----CCCCCCCCCCHHHHCCCC
Q ss_conf 289872678616889999999872377653002244774034532013---0477112----035667742113221564
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL---IGSPPGY----VGYEEGGALTEAVRRHPY 671 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L---iGappGY----vG~~~gg~Lte~vr~~P~ 671 (853)
|....+|+.|+|||.++|++...+-++....+.+|=.-.++.....++ ++++|-. +..-.--.|-+.+.+.-+
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 55999744777636999999985578851799835763017889999999840583200688999999999999981788
Q ss_pred -CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHC
Q ss_conf -1022021441498999999998404578879997783033155954851268764032679999999998628857726
Q gi|254780877|r 672 -QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLN 750 (853)
Q Consensus 672 -sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefln 750 (853)
-|++.||-+--..+++..+.-.. ++. +|+.++ ++ ++. +|...+.... +..---||--
T Consensus 132 ~v~l~vdEah~L~~~~le~Lrll~-nl~-~~~~~~---l~-ivL-----~Gqp~L~~~l-----------r~~~l~e~~~ 189 (269)
T COG3267 132 PVVLMVDEAHDLNDSALEALRLLT-NLE-EDSSKL---LS-IVL-----IGQPKLRPRL-----------RLPVLRELEQ 189 (269)
T ss_pred CEEEEEHHHHHHCHHHHHHHHHHH-HHC-CCCCCC---EE-EEE-----CCCCCCCHHH-----------CHHHHHHHHH
T ss_conf 737850167661754899999988-620-346672---11-455-----0780114354-----------4288985431
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 66815862889989999999999999999998579899998899999997089822062157999998733499999
Q gi|254780877|r 751 RLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAER 827 (853)
Q Consensus 751 Rid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~ 827 (853)
|++--+...|++.....--+...|+.- ..+..+ ++++++.++..+. |.+.|.|.......+-..
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a-----~~~~~l-~~~~a~~~i~~~s-------qg~P~lin~~~~~Al~~a 253 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGA-----GLPEPL-FSDDALLLIHEAS-------QGIPRLINNLATLALDAA 253 (269)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCC-----CCCCCC-CCHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHH
T ss_conf 677899538867478999999998505-----899666-7705789999985-------255489999889999999
No 448
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=96.15 E-value=0.013 Score=40.29 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHCCCC-CCCHHH
Q ss_conf 59489999999999874101236566512898726786168899999998723776--530022447740345-320130
Q gi|254780877|r 571 IGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE--NSMIRIDMSEYMEKH-SVSRLI 647 (853)
Q Consensus 571 ~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~--~~lir~dMsey~e~~-~vs~Li 647 (853)
..|..+++.+. +.++ +|++ ||+|+|||.+|-+.|-.+.-+. +.++- .-+. .+.+=+
T Consensus 7 ~~Q~~~~~~l~-------------~~~i-v~~~-GpAGtGKT~la~~~al~~l~~~~~~kiii------~Rp~v~~g~~i 65 (205)
T pfam02562 7 LGQKRYVEAIR-------------KNDI-VFGI-GPAGTGKTYLAVAAAVDALKDGKVKRIIL------TRPAVEAGEKL 65 (205)
T ss_pred HHHHHHHHHHH-------------CCCE-EEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEE------EECCCCCCCCC
T ss_conf 88999999971-------------7980-7998-99986099999999999997189437999------75771257754
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC---CCCCEEECCCCEEEEC
Q ss_conf 477112035667742113221564102202144149899999999840457887---9997783033155954
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTD---SQGRTVDFRNTLIIMT 717 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd---~~G~~v~f~n~iii~T 717 (853)
|.-| |-+.|+ -.||..=++|.+++-... +.+=.++++|.+.= +.=|=-+|.||+||.-
T Consensus 66 GfLP--------G~~~eK--~~p~~~p~~d~l~~~~~~--~~~~~l~~~~~Ie~~pl~~iRGrTf~n~~iIvD 126 (205)
T pfam02562 66 GFLP--------GDLEEK--VDPYLRPLYDALYDMLGA--EKVEKLIERGVIEIAPLAYMRGRTLNDAFIILD 126 (205)
T ss_pred CCCC--------CCHHHH--HHHHHHHHHHHHHHHHCH--HHHHHHHHCCCEEECCHHHHCCCCCCCCEEEEE
T ss_conf 5588--------978999--999999999999987289--999999975975661467655476256889997
No 449
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.14 E-value=0.097 Score=33.10 Aligned_cols=122 Identities=23% Similarity=0.444 Sum_probs=72.8
Q ss_pred HHHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE----------EH-----HHHHCCCCC
Q ss_conf 999996336777-86689528874077799999998734899844457437887----------31-----354217454
Q gi|254780877|r 188 RRAIQVLSRRTK-NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL----------DM-----GALIAGAKF 251 (853)
Q Consensus 188 ~~~~~iL~r~~k-~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l----------d~-----~~l~ag~~~ 251 (853)
-|++..+|-=.| .-.++|.+|+.|||.+...+|+-|..+. |+ ..++-| |+ +.++|.|.-
T Consensus 120 ~RiiDL~aPIGkGQRgLIVAPPkaGKT~LLq~IA~aI~~Nh-Pe----v~livLLIDERPEEVTdm~r~v~gEVvaSTfD 194 (379)
T PRK12608 120 MRVLDLVAPIGKGQRGLIVAPPRAGKTILLQQIAQAVAANH-PD----IHLMVLLIDERPEEVTDMKRSVKGEVYASTFD 194 (379)
T ss_pred CCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC-CC----CEEEEEECCCCCHHHHHHHHHCCEEEEEECCC
T ss_conf 11031004634574012745898657899999999998579-98----48999981689358888886237079997798
Q ss_pred CCHHHHHHHH------HHHHHHHCCCCEEEEECCHH------HHCC--CCCC-CCCCCHHHHHHHHH---------CCCC
Q ss_conf 2024545899------99998607997699963627------7302--6665-54335888876531---------2466
Q gi|254780877|r 252 RGEFEERLKS------LLCEIRSEDGEIILFIDELH------VLVG--AGKT-DGAMDASNLLKPSL---------ARGE 307 (853)
Q Consensus 252 rg~~e~r~~~------i~~~~~~~~~~~ilfide~h------~~~g--aG~~-~g~~Daan~LKP~L---------arG~ 307 (853)
+- -+++++. .-+-+.+...+|++++|-|- +.++ .|++ .|++|++-+-+|-. .-|.
T Consensus 195 ~~-~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRAyn~~~~~sGr~lsgg~d~~al~~pk~~Fgaar~ie~gGS 273 (379)
T PRK12608 195 RP-YDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARAYNSEVDSSGRTLSGGVDARALERPKRLFGAARKIEEGGS 273 (379)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99-89999999999999999987699689996517788998753368888615778695675006898531257778866
Q ss_pred EEEEEEEC
Q ss_conf 04899744
Q gi|254780877|r 308 LHCIGATT 315 (853)
Q Consensus 308 l~~IgaTT 315 (853)
|.+|++.-
T Consensus 274 lTiiaTaL 281 (379)
T PRK12608 274 LTILATAL 281 (379)
T ss_pred CEEEEEEE
T ss_conf 32566663
No 450
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.14 E-value=0.071 Score=34.18 Aligned_cols=89 Identities=27% Similarity=0.384 Sum_probs=39.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEE----EE----EHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 866895288740777999999987348998444574378----87----3135421745420245458999999860799
Q gi|254780877|r 200 NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLM----AL----DMGALIAGAKFRGEFEERLKSLLCEIRSEDG 271 (853)
Q Consensus 200 ~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~----~l----d~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~ 271 (853)
...-|-|.=|+|||-+...+=..+--.. ..|+- .. ++-.+. |.+ .-+..+.+++.+.
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~------k~R~HFh~FM~~vH~~l~~l~-g~~------dpl~~iA~~~~~~-- 130 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGER------KRRLHFHRFMARVHQRLHTLQ-GQT------DPLPPIADELAAE-- 130 (367)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHC-CCC------CCCHHHHHHHHHC--
T ss_conf 3588889978649999999986587645------665507799999999999971-888------8657999999841--
Q ss_pred CEEEEECCHHHH-CCCCCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 769996362773-0266655433588887653124660
Q gi|254780877|r 272 EIILFIDELHVL-VGAGKTDGAMDASNLLKPSLARGEL 308 (853)
Q Consensus 272 ~~ilfide~h~~-~gaG~~~g~~Daan~LKP~LarG~l 308 (853)
--+|+|||+|.= || -+|=++-+|.-.+++|-.
T Consensus 131 ~~vLCfDEF~VtDI~-----DAMiL~rL~~~Lf~~GV~ 163 (367)
T COG1485 131 TRVLCFDEFEVTDIA-----DAMILGRLLEALFARGVV 163 (367)
T ss_pred CCEEEEEEEEECCHH-----HHHHHHHHHHHHHHCCCE
T ss_conf 788986303623757-----889999999999977968
No 451
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.13 E-value=0.024 Score=37.96 Aligned_cols=204 Identities=16% Similarity=0.265 Sum_probs=116.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCHHHHCC
Q ss_conf 767459489999999999874101236566512898726786168899999998723776-------5300224477403
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE-------NSMIRIDMSEYME 639 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~-------~~lir~dMsey~e 639 (853)
-+.+-+-++-.+.|..-+ ..|+.+.+. =+++.-.|.+|+|||.+.+.+-+.|-... =.++-+|.=...+
T Consensus 266 pe~lpcRe~E~~~I~~Fi---e~~i~q~Gt-G~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt~ 341 (650)
T PTZ00112 266 PEYILGREKEAKEIRTFL---ETGIKQGGT-GQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLVH 341 (650)
T ss_pred CCCCCCCHHHHHHHHHHH---HHHCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCC
T ss_conf 744777078999999999---864116886-6569997899998003699999999999970899981599973637798
Q ss_pred CCCCC-----HHHCCCC-HHCCCCCCCCCCHH-HHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCC
Q ss_conf 45320-----1304771-12035667742113-22156410220214414989999999984045788799977830331
Q gi|254780877|r 640 KHSVS-----RLIGSPP-GYVGYEEGGALTEA-VRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNT 712 (853)
Q Consensus 640 ~~~vs-----~LiGapp-GYvG~~~gg~Lte~-vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~ 712 (853)
+|.+- +|.|-++ .... .-..|... -.++..+|+|.||++----.=+++++.+||=-+...+ .-
T Consensus 342 P~qaY~~L~e~Ltg~k~~~~~~--A~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT~~~S--------kL 411 (650)
T PTZ00112 342 PNAAYRVFYKKLFNKKPPNALN--SYKELDKLFNNNRTPSILIVDEADYIVTKTQKVLFTLFDWPTKKNS--------KL 411 (650)
T ss_pred HHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCEEEECCCCCCCCCC--------EE
T ss_conf 7889999999984898886789--9999999826899718999715777763677457773668898887--------07
Q ss_pred EEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC-CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 55954851268764032679999999998628857726668-15862889989999999999999999998579899998
Q gi|254780877|r 713 LIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD-EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFD 791 (853)
Q Consensus 713 iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid-~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~ 791 (853)
|+|.-+| +++-++.+.. .+ -.|+. .-+.|.|++.+.+.+|+.-.| .++.+ ++
T Consensus 412 IVIaIAN-----TMDLPERL~~----RV--------sSRLGltRltF~PYt~~QL~eII~sRL---------~~~~~-f~ 464 (650)
T PTZ00112 412 ILIIISN-----TMDLPYKMKP----SC--------RSRLAFGRLVFSPYKYQQIEKVIKERL---------ENCEI-ID 464 (650)
T ss_pred EEEEEEE-----CCCCCHHHHH----HH--------HHHCCCCEECCCCCCHHHHHHHHHHHH---------CCCCC-CC
T ss_conf 9999850-----6786065666----65--------552288500439989999999999986---------26777-88
Q ss_pred HHHHHHHHHCCCCCCCCCHH
Q ss_conf 89999999708982206215
Q gi|254780877|r 792 DQVIDWLSCRGYDPSYGARP 811 (853)
Q Consensus 792 ~~~~~~l~~~~~~~~~GaR~ 811 (853)
+.|+++.+++--.-.--||.
T Consensus 465 ~dAIQl~ARKVAavSGDARR 484 (650)
T PTZ00112 465 HTALQLCARRVTNYSGDMRK 484 (650)
T ss_pred HHHHHHHHHHHHHHCCHHHH
T ss_conf 78999998888750314899
No 452
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.12 E-value=0.05 Score=35.42 Aligned_cols=123 Identities=21% Similarity=0.324 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHC----CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCC---CCCH
Q ss_conf 35789999999633----6777866895288740777999999987348998444574378873135421745---4202
Q gi|254780877|r 182 GRDDEMRRAIQVLS----RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAK---FRGE 254 (853)
Q Consensus 182 GRe~EI~~~~~iL~----r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~---~rg~ 254 (853)
+|-+-+..+.+.+. ........|-|++|||||-+.-++|..++... ..+.-+.+..++...+ ..+.
T Consensus 136 ~R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g-------~~v~~v~~p~~~~~lK~s~~d~s 208 (306)
T PRK08939 136 DRLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKG-------VSSTLVHFPEFIRELKNAISDGS 208 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-------CEEEEEEHHHHHHHHHHHHCCCC
T ss_conf 89999999999999737698887788989999989999999999999869-------92999875999999999864898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC---CCCEEEEEEE--CHHHHHHHH
Q ss_conf 45458999999860799769996362773026665543358888765312---4660489974--489999973
Q gi|254780877|r 255 FEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA---RGELHCIGAT--TLDEYRKYI 323 (853)
Q Consensus 255 ~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La---rG~l~~IgaT--T~~Eyrk~i 323 (853)
++ ..++.++..+ +|++|+| ||... .+.--..+|-|.|- .-.+-++=+| +++|...|+
T Consensus 209 ~~----~~i~~~k~~~---vLiLDDi----GaE~~-t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l 270 (306)
T PRK08939 209 VK----EKIDAVKEAP---VLMLDDI----GAEQM-SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 270 (306)
T ss_pred HH----HHHHHHHCCC---EEEEECC----CCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 89----9999984499---8998444----65426-77789989999999999749997997799999999998
No 453
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.12 E-value=0.031 Score=37.17 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=29.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHCCCCCCCHHHC
Q ss_conf 898726786168899999998723776530022---4477403453201304
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRI---DMSEYMEKHSVSRLIG 648 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~---dMsey~e~~~vs~LiG 648 (853)
.+.++||+|.|||.|.|.++..+--++.. |.+ |++++. .+..+.+|
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~G~-i~i~g~~i~~~~--~~~~~~i~ 78 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLE--KALSSLIS 78 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCE-EEECCEEHHHHH--HHHHHHEE
T ss_conf 99999999875999999998617667886-999999889978--99997208
No 454
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.09 E-value=0.0057 Score=43.08 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=32.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 8987267861688999999987237765300224477403
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME 639 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e 639 (853)
++-|+|.||+|||.+|+.|.+.|+....+.+.+|.-++-+
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 9898799999999999999999998699759977488997
No 455
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.07 E-value=0.012 Score=40.51 Aligned_cols=116 Identities=28% Similarity=0.512 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCC----------CCCHHHCCCEEEEEEHH
Q ss_conf 853333357899999996336--777866895288740777999999987348----------99844457437887313
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIING----------DIPESLKGKRLMALDMG 243 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~----------~vp~~l~~~~i~~ld~~ 243 (853)
+.+-+||+...+.++++.... ++..+++|-||.||||--++..+-+.=-.. ..|+.|....+|.-.=|
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKG 300 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKG 300 (550)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 44562306999999999999872689807984588853899999998737555798666312225378888887453322
Q ss_pred HHHC-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCH-HHHHHHHHCCCCEEEEE
Q ss_conf 5421-745420245458999999860799769996362773026665543358-88876531246604899
Q gi|254780877|r 244 ALIA-GAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDA-SNLLKPSLARGELHCIG 312 (853)
Q Consensus 244 ~l~a-g~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Da-an~LKP~LarG~l~~Ig 312 (853)
++-. =..-+|-|| -++|. -||.|||--| ++.. |-+| -.|..|+|+=+|
T Consensus 301 AFTGA~~~r~GrFE-----------lAdGG-TLFLDEIGel--------PL~lQaKLL-RvLQegEieRvG 350 (550)
T COG3604 301 AFTGAINTRRGRFE-----------LADGG-TLFLDEIGEL--------PLALQAKLL-RVLQEGEIERVG 350 (550)
T ss_pred CCCCCHHCCCCCEE-----------ECCCC-EEECHHHCCC--------CHHHHHHHH-HHHHHCCEEECC
T ss_conf 33351014676356-----------55797-5760220367--------877889999-998636525347
No 456
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.02 E-value=0.0051 Score=43.49 Aligned_cols=88 Identities=30% Similarity=0.505 Sum_probs=51.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHCC----CCCCCHHHCCCCHHCCCCCCCCCCHHHHCC
Q ss_conf 66512898726786168899999998723776530022-4477403----453201304771120356677421132215
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYME----KHSVSRLIGSPPGYVGYEEGGALTEAVRRH 669 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~e----~~~vs~LiGappGYvG~~~gg~Lte~vr~~ 669 (853)
.+|-|.+|-+||||+|||.+==+-=..|-..+.|.+++ |==||+= --.|+-=||= =|-. -|=--+||-
T Consensus 242 ~rpHGIiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTvEDPVEY~i~GIgQ~Qvn~kIgl-----TFA~--GLRaILRQD 314 (495)
T TIGR02533 242 KRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGL-----TFAA--GLRAILRQD 314 (495)
T ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCEEEECCCCCH-----HHHH--HHHHHHCCC
T ss_conf 188961884177898525889999986358997156865782476248763651465430-----3888--878864279
Q ss_pred CCCEEEEHHH---HHCCHHHHHHH
Q ss_conf 6410220214---41498999999
Q gi|254780877|r 670 PYQVVLFDEI---EKAHSDVHNIL 690 (853)
Q Consensus 670 P~sVil~DEi---EKah~~v~~~l 690 (853)
| -||..=|| |=|-=-|+--|
T Consensus 315 P-DiiMvGEIRD~ETA~IAiQASL 337 (495)
T TIGR02533 315 P-DIIMVGEIRDLETAQIAIQASL 337 (495)
T ss_pred C-CEEEEECCCCHHHHHHHHHHHH
T ss_conf 9-8899823160689999998764
No 457
>PRK05480 uridine kinase; Provisional
Probab=95.99 E-value=0.0086 Score=41.66 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 56651289872678616889999999872377653002244774
Q gi|254780877|r 594 PQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY 637 (853)
Q Consensus 594 ~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey 637 (853)
.+||+ ....+||||+|||.+|+.|++.|-+ .....+.|-.|
T Consensus 3 ~k~P~-iIgIaG~SgSGKTT~a~~L~~~l~~--~~v~vi~~D~Y 43 (209)
T PRK05480 3 MKQPI-IIGIAGGSGSGKTTVASTIYEELGD--ESIAVISQDSY 43 (209)
T ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHHHCCC--CCEEEEECCCC
T ss_conf 88988-9999899977899999999998086--87599955441
No 458
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.99 E-value=0.17 Score=31.03 Aligned_cols=71 Identities=28% Similarity=0.371 Sum_probs=40.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHC--CCCCHHHCCCEEEEEEHHHHHC-----------CCCCC-CHHHHHHHHHHHHH
Q ss_conf 6689528874077799999998734--8998444574378873135421-----------74542-02454589999998
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIIN--GDIPESLKGKRLMALDMGALIA-----------GAKFR-GEFEERLKSLLCEI 266 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~--~~vp~~l~~~~i~~ld~~~l~a-----------g~~~r-g~~e~r~~~i~~~~ 266 (853)
-+.|||++|||||+-+=-||-+.+- |.. ..-++++|.-..=| |..++ -.-.+-|...++++
T Consensus 212 vvalVGPTGVGKTTTiAKLAA~~~l~~~~~-----kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~ 286 (412)
T PRK05703 212 VVALVGPTGVGKTTTLAKLAARYALEEGKD-----KVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQL 286 (412)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCC-----EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 699988888756769999999999972998-----179998376777799999999997197379847999999999871
Q ss_pred HHCCCCEEEEECC
Q ss_conf 6079976999636
Q gi|254780877|r 267 RSEDGEIILFIDE 279 (853)
Q Consensus 267 ~~~~~~~ilfide 279 (853)
... . ++|||-
T Consensus 287 ~~~--d-lILIDT 296 (412)
T PRK05703 287 ANC--D-LILIDT 296 (412)
T ss_pred CCC--C-EEEEEC
T ss_conf 589--9-799968
No 459
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.17 Score=31.03 Aligned_cols=44 Identities=27% Similarity=0.548 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHH--CC-----------CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 3333578999999963--36-----------777866895288740777999999987
Q gi|254780877|r 179 PVIGRDDEMRRAIQVL--SR-----------RTKNNPVLIGDPGVGKTAIIEGLASRI 223 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL--~r-----------~~k~n~~lvGe~GvGKtaive~la~~i 223 (853)
++.|-+. |.+.+-.+ +. |..-|++|||+||+||+.+..-++...
T Consensus 287 sIyG~e~-VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a 343 (682)
T COG1241 287 SIYGHED-VKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA 343 (682)
T ss_pred CCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 1038199-99999999608976647998620242269981798251999999988648
No 460
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.98 E-value=0.18 Score=31.00 Aligned_cols=90 Identities=28% Similarity=0.450 Sum_probs=56.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHC--CCCCCCHHHCCCCHHCCCCCC-----CCCCHHHHCCCC
Q ss_conf 898726786168899999998723776530022-447740--345320130477112035667-----742113221564
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYM--EKHSVSRLIGSPPGYVGYEEG-----GALTEAVRRHPY 671 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~--e~~~vs~LiGappGYvG~~~g-----g~Lte~vr~~P~ 671 (853)
+++++|+||+|||.+.++|..++=. +.+++.| |-.|.. .++.|..+. ++. |.+.| -.|..++|-+|.
T Consensus 164 NIlIsGgTGSGKTTllnALl~~IP~-~eRIvtIEDt~EL~l~~~n~V~l~~-~~~---~~g~~~vt~~~Ll~~aLRmrPD 238 (343)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP-QERLITIEDTLELVIPHENHVRLLY-SKN---GAGLGAVTAEHLLQASLRMRPD 238 (343)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEECCCCCCCCCCCCEEEEEE-CCC---CCCCCCCCHHHHHHHHHCCCCC
T ss_conf 8999888986199999999962896-5527996115002589999689996-589---8885839799999998607998
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 102202144149899999999840457
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ 698 (853)
= |++-|+- ..+.|+ |||.+..|+
T Consensus 239 R-IivGEvR--G~EA~d-~L~A~nTGH 261 (343)
T PRK13851 239 R-ILLGEMR--DDAAWA-YLSEVVSGH 261 (343)
T ss_pred E-EEEEEEC--CHHHHH-HHHHHHCCC
T ss_conf 2-8998526--699999-999984699
No 461
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.97 E-value=0.0086 Score=41.65 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=35.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
Q ss_conf 65128987267861688999999987237765300224477403
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYME 639 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e 639 (853)
||. ++.|+|.||.|||.+|+.|.+.|.....+.+.+|.-++-.
T Consensus 3 kg~-viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~ 45 (175)
T PRK00889 3 RGV-TVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRT 45 (175)
T ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 888-9998898999999999999999998699679977688887
No 462
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.95 E-value=0.039 Score=36.28 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=14.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 8987267861688999999987237
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFD 624 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~ 624 (853)
+++|.|+-|.|||...+.|+...|.
T Consensus 54 vlvL~G~QG~gKStf~~~L~~~~~~ 78 (198)
T pfam05272 54 VLILQGAQGSGKSTFLKKLGGEWFT 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 7899889867899999997377515
No 463
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.031 Score=37.15 Aligned_cols=33 Identities=39% Similarity=0.577 Sum_probs=24.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8987267861688999999987237765300224
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRID 633 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~d 633 (853)
...++||+|.|||.|.+.++..+-.++. -|++|
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~ 62 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILID 62 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEEC
T ss_conf 9999999998399999999767758974-89999
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.88 E-value=0.013 Score=40.07 Aligned_cols=111 Identities=25% Similarity=0.374 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEE-HHHHHCCCCCCCHHHHHHHHH
Q ss_conf 7899999996336777866895288740777999999987348998444574378873-135421745420245458999
Q gi|254780877|r 184 DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALD-MGALIAGAKFRGEFEERLKSL 262 (853)
Q Consensus 184 e~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld-~~~l~ag~~~rg~~e~r~~~i 262 (853)
..++...++..-+ .+.|.++.|..|.|||++...|...| |+ +-||+.+. ..-|
T Consensus 148 ~~~~~~fL~~aV~-~r~NIlIsGgTGSGKTTllnALl~~I-----P~---~eRIvtIEDt~EL----------------- 201 (343)
T PRK13851 148 NGDLEAFLHACVV-GRLTMLLCGPTGSGKTTMSKTLISAI-----PP---QERLITIEDTLEL----------------- 201 (343)
T ss_pred CHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHCC-----CC---CCCEEEECCCCCC-----------------
T ss_conf 3779999999997-69889998889861999999999628-----96---5527996115002-----------------
Q ss_pred HHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCC
Q ss_conf 99986079976999636277302666554335888876531246604899744899999730011132023111115777
Q gi|254780877|r 263 LCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPT 342 (853)
Q Consensus 263 ~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps 342 (853)
.+ ..++.+-||... .|.+.|.+++..+|+-+| --|-..|.|.|--
T Consensus 202 --~l-~~~n~V~l~~~~------~~~g~~~vt~~~Ll~~aL--------------------------RmrPDRIivGEvR 246 (343)
T PRK13851 202 --VI-PHENHVRLLYSK------NGAGLGAVTAEHLLQASL--------------------------RMRPDRILLGEMR 246 (343)
T ss_pred --CC-CCCCEEEEEECC------CCCCCCCCCHHHHHHHHH--------------------------CCCCCEEEEEEEC
T ss_conf --58-999968999658------988858397999999986--------------------------0799828998526
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6789999999789
Q gi|254780877|r 343 VTDTISILRGLKE 355 (853)
Q Consensus 343 ~~~t~~iL~gl~~ 355 (853)
-+|+..+|+.+-+
T Consensus 247 G~EA~d~L~A~nT 259 (343)
T PRK13851 247 DDAAWAYLSEVVS 259 (343)
T ss_pred CHHHHHHHHHHHC
T ss_conf 6999999999846
No 465
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.84 E-value=0.045 Score=35.82 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 57899999996336777866895288740777999999987348
Q gi|254780877|r 183 RDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIING 226 (853)
Q Consensus 183 Re~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~ 226 (853)
.++.++.+..-+.+ .+.-++|-++|-|||-+.-..+..+...
T Consensus 41 Q~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~~~~ 82 (442)
T COG1061 41 QEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAELKRS 82 (442)
T ss_pred HHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999962225--7867999679998899999999982698
No 466
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=95.83 E-value=0.031 Score=37.10 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6895288740777999999987
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRI 223 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i 223 (853)
++++|++|||||+|+..+...-
T Consensus 4 ivllGd~~VGKTsli~r~~~~~ 25 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGT 25 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9998999978999999997098
No 467
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.83 E-value=0.0089 Score=41.52 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=29.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC
Q ss_conf 77866895288740777999999987348998444574378873135421
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA 247 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 247 (853)
.|.=.+++|+.|+|||+++-.||+++ +..|++.|-..+--
T Consensus 3 ~~~ii~i~GpTasGKs~la~~la~~~----------~~eIIsaDS~QvYk 42 (304)
T PRK00091 3 KPKLIVLVGPTASGKTALAIELAKRL----------NGEIISVDSMQVYR 42 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC----------CCEEEEECHHHHHC
T ss_conf 99779998988658999999999987----------99899412688749
No 468
>PRK10536 hypothetical protein; Provisional
Probab=95.82 E-value=0.024 Score=38.10 Aligned_cols=138 Identities=20% Similarity=0.302 Sum_probs=69.4
Q ss_pred HHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 66178667751000000012355477674594899999999998741012365665128987267861688999999987
Q gi|254780877|r 542 RWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARL 621 (853)
Q Consensus 542 ~~TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~ 621 (853)
.+.+.|.--+..+.++. .-+.-+--+|...++++.+ +.+ -+-.||.|+|||.+|.+.|-.
T Consensus 38 ~~~~~~~~~~~~~~~~~-----~pi~pkt~~Q~~yi~~i~~-------------~~i--vf~~GpAGTGKT~lA~a~Al~ 97 (262)
T PRK10536 38 QMGGVEAIGMARDSRDT-----SPILARNEAQLHYLKAIES-------------KQL--IFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred HHCCCCHHHHHCCCCCC-----CCCCCCCHHHHHHHHHHHH-------------CCE--EEEECCCCCCHHHHHHHHHHH
T ss_conf 84483314330267889-----9867898649999999861-------------983--999899987589999999999
Q ss_pred HCCCCCCCCCCCHHHHCCCCCCCHHHCCCCH-HCCCCCC---CCCCHHHHCCCCCEEEEHHHHHCCHH-HHHHHHHHHHC
Q ss_conf 2377653002244774034532013047711-2035667---74211322156410220214414989-99999998404
Q gi|254780877|r 622 LFDDENSMIRIDMSEYMEKHSVSRLIGSPPG-YVGYEEG---GALTEAVRRHPYQVVLFDEIEKAHSD-VHNILLQVLDD 696 (853)
Q Consensus 622 lf~~~~~lir~dMsey~e~~~vs~LiGappG-YvG~~~g---g~Lte~vr~~P~sVil~DEiEKah~~-v~~~llqild~ 696 (853)
++.+.+ +.++|=+-|- =+|-+-| |-|.|++ .||--=++|.+++-... ..+-++.- +.
T Consensus 98 ~l~~~~---------------~~kIIltRP~V~~ge~lGfLPGdl~EK~--~Pyl~Pi~D~L~~~lg~~~~~~~~~~-e~ 159 (262)
T PRK10536 98 ALIHKD---------------VDRIIVTRPVLQADEDLGFLPGDIAEKF--APYFRPVYDVLVRRLGASFMQYCLRP-EI 159 (262)
T ss_pred HHHHCC---------------CCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHH-HC
T ss_conf 998588---------------8689996678756766676989879988--78887899999999685999999873-05
Q ss_pred CEEE---CCCCCEEECCCCEEEEC
Q ss_conf 5788---79997783033155954
Q gi|254780877|r 697 GRLT---DSQGRTVDFRNTLIIMT 717 (853)
Q Consensus 697 G~lt---d~~G~~v~f~n~iii~T 717 (853)
|.+. -+.-|=-+|.||+||+-
T Consensus 160 G~Iei~PlafmRGrTf~na~IIvD 183 (262)
T PRK10536 160 GKVEIAPFAYMRGRTFENAVVILD 183 (262)
T ss_pred CCEEEEEHHHHCCCCCCCEEEEEE
T ss_conf 948998758744775144289984
No 469
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.81 E-value=0.0066 Score=42.58 Aligned_cols=39 Identities=26% Similarity=0.543 Sum_probs=30.2
Q ss_pred EEEE-EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 2898-726786168899999998723776530022447740
Q gi|254780877|r 599 GSFM-FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 599 ~~fl-f~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
|.+| -+||||+|||.|||.+--.-- ...--+|+|-.|..
T Consensus 356 Ge~laIIGPSgSGKStLaR~~vG~W~-~~~G~VRLDGadl~ 395 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLARILVGIWP-PASGSVRLDGADLK 395 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC-CCCCCEEEEHHHHH
T ss_conf 74588874786525889878872101-35653364033440
No 470
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.80 E-value=0.019 Score=38.90 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=15.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 78668952887407779999999873
Q gi|254780877|r 199 KNNPVLIGDPGVGKTAIIEGLASRII 224 (853)
Q Consensus 199 k~n~~lvGe~GvGKtaive~la~~i~ 224 (853)
+++.+++.++|.|||.+.-.++.+..
T Consensus 18 ~~~~~i~~pTGsGKT~~~~~~i~~~~ 43 (103)
T pfam04851 18 KKRGLIVMATGSGKTLTAAKLIARLL 43 (103)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 39869995899987999999999998
No 471
>PRK03918 chromosome segregation protein; Provisional
Probab=95.80 E-value=0.012 Score=40.45 Aligned_cols=16 Identities=31% Similarity=0.225 Sum_probs=11.2
Q ss_pred ECCCCCHHHHHHHHHH
Q ss_conf 6288998999999999
Q gi|254780877|r 757 LFEKLRKEDMAKIVRI 772 (853)
Q Consensus 757 ~F~~l~~~~~~~i~~~ 772 (853)
+|.+|+.+.+.++++.
T Consensus 824 gfg~LD~~~~~~~~~~ 839 (882)
T PRK03918 824 PTPFLDEERRRKLVDI 839 (882)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 9788798999999999
No 472
>PRK08760 replicative DNA helicase; Provisional
Probab=95.79 E-value=0.21 Score=30.42 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHH-CCCCCHHHCCCE
Q ss_conf 1078864435699872985333335789999999633677786-68952887407779999999873-489984445743
Q gi|254780877|r 159 DALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRII-NGDIPESLKGKR 236 (853)
Q Consensus 159 ~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~-~~~vp~~l~~~~ 236 (853)
+.+.++...+.+....+. .+.|=..-+..+=.++..-.+.+ .++-|-||+||||+.-.+|..++ ++..| .-
T Consensus 190 ~~l~~~~~~i~~~~~~~~--~~~Gi~TG~~~LD~~t~Gl~~G~LiViaaRPsmGKTalalnia~~~A~~~~~~-----V~ 262 (476)
T PRK08760 190 GALKDAFEELRNRFENGG--NITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKG-----VA 262 (476)
T ss_pred HHHHHHHHHHHHHHHCCC--CCEECCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC-----EE
T ss_conf 999999999999985799--95336779688997446998777799987788747899999999999837997-----89
Q ss_pred EEEEEHHHH
Q ss_conf 788731354
Q gi|254780877|r 237 LMALDMGAL 245 (853)
Q Consensus 237 i~~ld~~~l 245 (853)
+|||.|+.-
T Consensus 263 ~fSLEMs~~ 271 (476)
T PRK08760 263 VFSMEMSAS 271 (476)
T ss_pred EEECCCCHH
T ss_conf 970369999
No 473
>pfam10923 DUF2791 Protein of unknown function (DUF2791). This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.79 E-value=0.21 Score=30.41 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=95.1
Q ss_pred EEEEHHHHHC----CHH----HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHH---HHHHHHHHHHH
Q ss_conf 0220214414----989----999999984045788799977830331559548512687640326---79999999998
Q gi|254780877|r 673 VVLFDEIEKA----HSD----VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGD---SVHDKVMGIVR 741 (853)
Q Consensus 673 Vil~DEiEKa----h~~----v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~---~~~~~~~~~l~ 741 (853)
+|+|||.|.- |.+ -++-++|++|+=. .-.|.++.|+|| |+....++.. ...+.+.+.+.
T Consensus 92 li~lDE~~nL~ki~~~~~R~knye~il~i~nd~~-------qG~~~~L~~~~~---GTP~F~~d~rrGv~sy~aL~~RL~ 161 (267)
T pfam10923 92 LVVLDEAVNLYKLRNSQARDKNYEALLQILNDIL-------QGRAPGLGFVIG---GTPEFLEDPRRGLYSYEALQSRLA 161 (267)
T ss_pred EEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEC---CCHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 8741657898714324778878999999998986-------698887058863---784876087667225589999871
Q ss_pred H-HC-CHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHHHHHHCCCCCCCCCHH---HHHH
Q ss_conf 6-28-857726668158628899899999999999999999985-7989999889999999708982206215---7999
Q gi|254780877|r 742 S-AF-KPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKE-RNISMDFDDQVIDWLSCRGYDPSYGARP---LKRV 815 (853)
Q Consensus 742 ~-~f-~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~-~~i~l~~~~~~~~~l~~~~~~~~~GaR~---l~r~ 815 (853)
. +| .+.|.|--.-+|-..||+.+++..+..+ +....+. .+....++++.+..+++.++.. .|+.- -|.+
T Consensus 162 ~~~~~~~~~~d~~~pvIrL~~l~~e~l~~L~~k----vr~i~a~~~~~~~~v~d~~i~~f~~~~~~r-~G~~~~~tPR~~ 236 (267)
T pfam10923 162 ENFFADAGFDDPRAPVIRLQPLTPEELLVLLEK----VRDVYAEGYGDEALVSDEELAAFAQHVSGR-LGGAVFVTPREF 236 (267)
T ss_pred CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHH----HHHHHHCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCCCCHHHH
T ss_conf 165655676787786465299998999999999----999986507750368999999999999714-586107076999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 998733499999970
Q gi|254780877|r 816 IQRYIQNPLAERVLS 830 (853)
Q Consensus 816 i~~~i~~~la~~il~ 830 (853)
|...| +.|...--+
T Consensus 237 ir~fv-~~Ldi~~qn 250 (267)
T pfam10923 237 IKDFV-DLLDILEQN 250 (267)
T ss_pred HHHHH-HHHHHHHHC
T ss_conf 99999-999999878
No 474
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.74 E-value=0.068 Score=34.32 Aligned_cols=29 Identities=38% Similarity=0.658 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 45458999999860799769996362773
Q gi|254780877|r 255 FEERLKSLLCEIRSEDGEIILFIDELHVL 283 (853)
Q Consensus 255 ~e~r~~~i~~~~~~~~~~~ilfide~h~~ 283 (853)
++.-+..+++|+....++++||+|+.|-|
T Consensus 113 l~~l~~~L~~Ela~~~~pl~LVlDDyHli 141 (894)
T COG2909 113 LESLLSSLLNELASYEGPLYLVLDDYHLI 141 (894)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99999999999875149649995353225
No 475
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.72 E-value=0.031 Score=37.17 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=30.7
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 23656651289872678616889999999872377653002244
Q gi|254780877|r 591 LQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDM 634 (853)
Q Consensus 591 l~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dM 634 (853)
+..+++|+ ..|.+|.|||||+.+|-.||..|. =.+++.-||
T Consensus 86 ~r~~~~pl-iILigGtsGvGKSTlA~~LA~rLg--I~~visTD~ 126 (306)
T PRK04220 86 IRKSKEPI-IILIGGASGVGTSTIAFELASRLG--IRSVIGTDS 126 (306)
T ss_pred HHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHC--CCEEECCHH
T ss_conf 85369987-999858998878999999999709--883422216
No 476
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.0079 Score=41.96 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=21.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 8987267861688999999987237
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFD 624 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~ 624 (853)
.+...||+|||||++++.+|+.|-.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9998679984589999999999985
No 477
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.69 E-value=0.012 Score=40.49 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=19.7
Q ss_pred CCCCEEE---CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6681586---2889989999999999999999
Q gi|254780877|r 751 RLDEIIL---FEKLRKEDMAKIVRIQLGRVLS 779 (853)
Q Consensus 751 Rid~iv~---F~~l~~~~~~~i~~~~l~~l~~ 779 (853)
+||-+|+ |..||.+.+...+.- |..|..
T Consensus 975 ~ldtlFIDEGFGSLD~e~Ld~a~~a-L~~L~~ 1005 (1047)
T PRK10246 975 RIDSLFLDEGFGTLDSETLDTALDA-LDALNA 1005 (1047)
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHH-HHHHHH
T ss_conf 8884656799777698899999999-999996
No 478
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.69 E-value=0.11 Score=32.58 Aligned_cols=97 Identities=26% Similarity=0.420 Sum_probs=53.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCC---HHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6895288740777999999987348998444574378873135421745420---2454589999998607997699963
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRG---EFEERLKSLLCEIRSEDGEIILFID 278 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg---~~e~r~~~i~~~~~~~~~~~ilfid 278 (853)
+..+|+||||||+++.+|..+-....+. ..+|-. .+++|-+-|= |.-.-+.+.+|-.+-++ -++|.||
T Consensus 42 VavvGPpgvGKtTLiksLvk~ytk~~l~-~i~GPi-------Tvvs~K~rRiTfiEc~nDi~smiD~AKvAD-lVLl~iD 112 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQNIS-DIKGPI-------TVVTGKKRRLTFIECPNDINAMIDIAKVAD-LVLLLID 112 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCCCE-------EEEECCCEEEEEEECCCHHHHHHHHHHHHH-EEEEEEC
T ss_conf 9998989977889999999998544375-578887-------999468426899974860999987887643-3688861
Q ss_pred CHHHHCCCCCCC-CCCCHHHHHHHHHCCCCEEEEEEECH
Q ss_conf 627730266655-43358888765312466048997448
Q gi|254780877|r 279 ELHVLVGAGKTD-GAMDASNLLKPSLARGELHCIGATTL 316 (853)
Q Consensus 279 e~h~~~gaG~~~-g~~Daan~LKP~LarG~l~~IgaTT~ 316 (853)
-- -+-| -++..-|+| -+-|--+++|..|.
T Consensus 113 ~s------~GfEmEtfEfLnil---q~hG~PkV~GVltH 142 (225)
T cd01882 113 AS------FGFEMETFEFLNIL---QVHGFPRVMGVLTH 142 (225)
T ss_pred CC------CCEEEEHHHHHHHH---HHCCCCCEEEEEEC
T ss_conf 66------55352089999999---97599943788544
No 479
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=95.64 E-value=0.041 Score=36.17 Aligned_cols=225 Identities=22% Similarity=0.388 Sum_probs=138.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC--------CCCCCCCCCHHHHCC
Q ss_conf 674594899999999998741012365665128987267861688999999987237--------765300224477403
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFD--------DENSMIRIDMSEYME 639 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~--------~~~~lir~dMsey~e 639 (853)
.-++|++.++++|-..|+++- |--++.|-.|=||+||=-.|+++-..+|- -...|+-+||.-+.|
T Consensus 319 ~dl~G~s~~Me~VR~~v~lYA-------rs~atVLi~GE~GTGKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGAi~E 391 (658)
T TIGR02329 319 DDLLGESAAMEQVRALVRLYA-------RSAATVLIEGESGTGKELVAQAIHREYALRYDQLSGRRDRPFVAINCGAIAE 391 (658)
T ss_pred HHHCCCCCCHHHHHHHHHHHC-------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf 765389821389999998526-------8865067514777228999999759998746665013378846874746568
Q ss_pred CCCCCHHHCCCCH-HCCCCCCCC--CCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC-CCC--CEEECCCCE
Q ss_conf 4532013047711-203566774--2113221564102202144149899999999840457887-999--778303315
Q gi|254780877|r 640 KHSVSRLIGSPPG-YVGYEEGGA--LTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTD-SQG--RTVDFRNTL 713 (853)
Q Consensus 640 ~~~vs~LiGappG-YvG~~~gg~--Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd-~~G--~~v~f~n~i 713 (853)
+-==+-|+|=--| +-|...||. |.|.-.+ .-++||||=-..=-.+.=||.||+|=..+= |-- -.||-|
T Consensus 392 sLLEaELFGYeeGAFTGaRrGG~~GL~E~Ah~---GTLFLDEIGEmPLPLQtRLLRVLeEreV~RvG~~~P~~VDvR--- 465 (658)
T TIGR02329 392 SLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVR--- 465 (658)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC---CCEEEHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEEE---
T ss_conf 88877642676665016776776122220057---951001003578614677777651221476178754024443---
Q ss_pred EEECCCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCC-EEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 595485126876403267999999999-86288577266681-586288998--99999999999999999985798999
Q gi|254780877|r 714 IIMTSNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDE-IILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMD 789 (853)
Q Consensus 714 ii~TsN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~-iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~ 789 (853)
||+-|. ..+.+.+ ...|+-+++=|+.- -|-.-||-. .|+.-++..++..-..+--.-...+=
T Consensus 466 vvaAth--------------~~L~~~v~~GrFR~DLfYRL~~Lri~lPpLR~R~~Di~~La~~~l~~~~rrePr~~l~~P 531 (658)
T TIGR02329 466 VVAATH--------------CALETAVQQGRFRRDLFYRLSILRIDLPPLRERPDDILPLAAEYLKQALRREPRAALALP 531 (658)
T ss_pred EEECCC--------------HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCC
T ss_conf 433122--------------225879857882422899999985147876686445999999999875322515765188
Q ss_pred ECHHHHHHHHH-----CCCCCCCCCHHHHHHHHHH
Q ss_conf 98899999997-----0898220621579999987
Q gi|254780877|r 790 FDDQVIDWLSC-----RGYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 790 ~~~~~~~~l~~-----~~~~~~~GaR~l~r~i~~~ 819 (853)
+++.+...|.- +.|+=--..|.|+..+|+.
T Consensus 532 ~s~~~~q~L~~~~~~L~~y~WpGNvRELrnl~ERl 566 (658)
T TIGR02329 532 LSEAALQELAAVEDALQRYAWPGNVRELRNLVERL 566 (658)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 63899988743788986168998437887799999
No 480
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.63 E-value=0.15 Score=31.50 Aligned_cols=148 Identities=20% Similarity=0.306 Sum_probs=69.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE---------------------EHHHHHCCCCCCCHHHHHH
Q ss_conf 6689528874077799999998734899844457437887---------------------3135421745420245458
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL---------------------DMGALIAGAKFRGEFEERL 259 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l---------------------d~~~l~ag~~~rg~~e~r~ 259 (853)
-..+.|.+|||||++..-+++... .+..||.+ +=.-++++|+-.--. .|+
T Consensus 142 RigIfgg~GvGKt~Ll~~i~~~~~--------adv~V~aliGeRgrEv~efi~~~~~~~~l~~tvvv~atsd~p~~-~R~ 212 (418)
T TIGR03498 142 RLGIFAGSGVGKSTLLSMLARNTD--------ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPL-MRR 212 (418)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCC--------CCEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH-HHH
T ss_conf 641137899988899999987507--------98689988302689999999986531564426999944889878-888
Q ss_pred H------HHHHHHHHCCCCEEEEECCHHHHCCCCC-----------CCC-CCCH----HHHHHHH---H-CCCCEEEEEE
Q ss_conf 9------9999986079976999636277302666-----------554-3358----8887653---1-2466048997
Q gi|254780877|r 260 K------SLLCEIRSEDGEIILFIDELHVLVGAGK-----------TDG-AMDA----SNLLKPS---L-ARGELHCIGA 313 (853)
Q Consensus 260 ~------~i~~~~~~~~~~~ilfide~h~~~gaG~-----------~~g-~~Da----an~LKP~---L-arG~l~~Iga 313 (853)
+ .+-++......+|+|++|.+-....|++ ..| .-|. +.++--+ . ..|.|..|-+
T Consensus 213 ~a~~~a~aiAEyFrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~~ 292 (418)
T TIGR03498 213 QAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFT 292 (418)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_conf 88878778999998679838999557258899999999865899986778841777726878651368999856999999
Q ss_pred ECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 44899999730011132023111115777678999999978986541496101589999986333202457674778999
Q gi|254780877|r 314 TTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDL 393 (853)
Q Consensus 314 TT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDl 393 (853)
.+.+ .| .+.+|-.+.+..||-|.- -||...-.-..+| |||+
T Consensus 293 v~~~-------~d----------D~~dpi~d~~~~i~Dg~i--------------------vLsr~la~~g~yP--AIdv 333 (418)
T TIGR03498 293 VLVD-------GD----------DHNEPVADAVRGILDGHI--------------------VLDRAIAERGRYP--AINV 333 (418)
T ss_pred EECC-------CC----------CCCCCCHHHHHHHCCEEE--------------------EECHHHHHCCCCC--CCCC
T ss_conf 9633-------88----------867761777767626389--------------------9848898679999--7088
Q ss_pred HHH
Q ss_conf 999
Q gi|254780877|r 394 MDE 396 (853)
Q Consensus 394 lDe 396 (853)
+.-
T Consensus 334 l~S 336 (418)
T TIGR03498 334 LAS 336 (418)
T ss_pred CCC
T ss_conf 526
No 481
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.62 E-value=0.13 Score=31.99 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 689528874077799999998734
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASRIIN 225 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~i~~ 225 (853)
.++.|+||+|||.+.-.++..-+.
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 158768999999999999999987
No 482
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=95.61 E-value=0.053 Score=35.25 Aligned_cols=142 Identities=32% Similarity=0.461 Sum_probs=80.6
Q ss_pred EEEC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC---CCHHH-C---CCCHHCCCCCCCCCC-----HHHHC
Q ss_conf 8726-7861688999999987237765300224477403453---20130-4---771120356677421-----13221
Q gi|254780877|r 602 MFLG-PTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHS---VSRLI-G---SPPGYVGYEEGGALT-----EAVRR 668 (853)
Q Consensus 602 lf~G-ptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~---vs~Li-G---appGYvG~~~gg~Lt-----e~vr~ 668 (853)
.|+| .+|||||+-.-.=|..+....... .+ -|-|.|. ...|+ | -||-++-|. |-.|. ..+++
T Consensus 8 IylG~apGVGKTy~ML~eA~~l~~~G~DV-Vi---G~vEthgR~eT~~l~~gLe~iP~~~~~y~-g~~~~E~Dldail~R 82 (211)
T pfam02702 8 IFLGAAPGVGKTYAMLSEAHELLERGVDV-VI---GYVETHGRAETAALLEGLEVIPRKEIEYR-GVTLEEMDLDAILAR 82 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCE-EE---EEECCCCCHHHHHHHCCCCCCCCEEEEEC-CEECCCCCHHHHHHC
T ss_conf 98535998778999999999999789956-99---99537997899999768766887125368-855350799999853
Q ss_pred CCCCEEEEHHHHHC------CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 56410220214414------989999999984045788799977830331559548512687640326799999999986
Q gi|254780877|r 669 HPYQVVLFDEIEKA------HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRS 742 (853)
Q Consensus 669 ~P~sVil~DEiEKa------h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~ 742 (853)
+| .|+|.||.-.. |+.=|+=...+|+.|.= ++-|-|+ +.+..-++......--.++.
T Consensus 83 ~P-~vvLVDELAHtN~pgsr~~KR~qDVeeLL~aGId--------------V~TTlNv--QHlESlnd~V~~iTgv~vrE 145 (211)
T pfam02702 83 KP-QLVLVDELAHTNAPGSRHEKRWQDVEELLDAGID--------------VYTTVNV--QHLESLNDVVERITGVRVRE 145 (211)
T ss_pred CC-CEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCE--------------EEEECHH--HHHHHHHHHHHHHCCCCCCC
T ss_conf 99-9899844556799988887547749999987990--------------8860147--76652678999722985477
Q ss_pred HCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 288577266681586288998999
Q gi|254780877|r 743 AFKPEFLNRLDEIILFEKLRKEDM 766 (853)
Q Consensus 743 ~f~peflnRid~iv~F~~l~~~~~ 766 (853)
..|..|+..-|+|+.- .++++++
T Consensus 146 tVPD~vl~~Adei~lV-D~~Pe~L 168 (211)
T pfam02702 146 TVPDSVLDEADEVVLV-DLTPEEL 168 (211)
T ss_pred CCCHHHHHHCCEEEEC-CCCHHHH
T ss_conf 1888999535827981-6997999
No 483
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.57 E-value=0.1 Score=32.99 Aligned_cols=111 Identities=23% Similarity=0.441 Sum_probs=66.3
Q ss_pred HHHHHHHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE----------EHHH-----HHCCCC
Q ss_conf 99999963367778-6689528874077799999998734899844457437887----------3135-----421745
Q gi|254780877|r 187 MRRAIQVLSRRTKN-NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL----------DMGA-----LIAGAK 250 (853)
Q Consensus 187 I~~~~~iL~r~~k~-n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l----------d~~~-----l~ag~~ 250 (853)
--|++.++|-=.|- -.++|.+|..|||.+...+|+-|..+. |+ .+++-| |+.. ++|.|-
T Consensus 156 s~RiiDL~aPIGkGQRgLIVAPPkaGKT~lLq~IA~aI~~N~-Pe----~~liVLLIDERPEEVTdm~r~v~~eV~aStf 230 (416)
T PRK09376 156 STRVIDLVAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNH-PE----VHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred CCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC-CC----EEEEEEEECCCCHHHHHHHHHCCEEEEEECC
T ss_conf 400211005413585003756998754799999999998569-97----1999999048934777877504618999779
Q ss_pred CCCHHHHHHHH---HHH---HHHHCCCCEEEEECCH------HHHCC--CCCC-CCCCCHHHHHHHHH
Q ss_conf 42024545899---999---9860799769996362------77302--6665-54335888876531
Q gi|254780877|r 251 FRGEFEERLKS---LLC---EIRSEDGEIILFIDEL------HVLVG--AGKT-DGAMDASNLLKPSL 303 (853)
Q Consensus 251 ~rg~~e~r~~~---i~~---~~~~~~~~~ilfide~------h~~~g--aG~~-~g~~Daan~LKP~L 303 (853)
-+. -++.++- +++ -+.+...+|++++|-| |+++. .|+. +|++|++-+-+|-=
T Consensus 231 D~~-~~~H~~vae~~lerAkRlvE~G~DVvillDSiTRLaRAyN~~~~~sGr~lsGG~D~~Al~~PKr 297 (416)
T PRK09376 231 DEP-AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKR 297 (416)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHH
T ss_conf 998-7899999999999999998769978999731578888862346998775447657777605567
No 484
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.56 E-value=0.029 Score=37.39 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 68952887407779999999
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLAS 221 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~ 221 (853)
++++|++|||||+|+..+..
T Consensus 2 i~ilG~~~vGKTsll~~l~~ 21 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKL 21 (158)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999999953
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.038 Score=36.43 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=25.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 8987267861688999999987237765300224477
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSE 636 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMse 636 (853)
.+.++||||.|||.|.|.++-.+--++ .-|.+|--+
T Consensus 28 ~~~ivGpSG~GKSTllr~i~Gl~~p~~-G~I~~~g~~ 63 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDS-GSILIDGED 63 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCC-EEEEECCEE
T ss_conf 999999999839999999985999996-399999999
No 486
>PRK06321 replicative DNA helicase; Provisional
Probab=95.54 E-value=0.2 Score=30.48 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHH-CCCCCHHHCCCEEEEEEHHHH
Q ss_conf 33335789999999633677786-68952887407779999999873-489984445743788731354
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRII-NGDIPESLKGKRLMALDMGAL 245 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~-~~~vp~~l~~~~i~~ld~~~l 245 (853)
++.|=..-...+=.++..-.+.+ .++-|-||+||||++-.+|..++ .+..| .-+|||.|+.-
T Consensus 205 ~itGipTGf~~LD~lt~Gl~~GdliviaaRPsmGKTalalnia~~~a~~~~~~-----v~~fSLEMs~~ 268 (472)
T PRK06321 205 MISGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLP-----VGIFSLEMTVD 268 (472)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-----EEEECCCCCHH
T ss_conf 76422568488999855988675799853899977999999999999856994-----69975779999
No 487
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.54 E-value=0.031 Score=37.16 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=18.6
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 36777866895288740777999999
Q gi|254780877|r 195 SRRTKNNPVLIGDPGVGKTAIIEGLA 220 (853)
Q Consensus 195 ~r~~k~n~~lvGe~GvGKtaive~la 220 (853)
.++++=.++++|.+|||||+|+..+.
T Consensus 10 ~~~~~~KililG~~~sGKTsll~~l~ 35 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHC
T ss_conf 44573189999899978899999983
No 488
>PRK08694 consensus
Probab=95.52 E-value=0.25 Score=29.68 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHH-CCCCCHHHCCCEEEEEEHHHH
Q ss_conf 33335789999999633677786-68952887407779999999873-489984445743788731354
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRII-NGDIPESLKGKRLMALDMGAL 245 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~-~~~vp~~l~~~~i~~ld~~~l 245 (853)
.+.|=..-+..+=.....-.+.+ .++-|-||+||||+.-.+|..++ ++..| .-+|||.|+.-
T Consensus 197 ~~~Gi~TG~~~LD~~t~Gl~~G~LiVIaaRPsmGKTalalnia~~~a~~~~~~-----V~~fSLEMs~~ 260 (468)
T PRK08694 197 EVTGVPTGFIDLDKKTSGLQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGKLP-----VAVFSMEMGGA 260 (468)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC-----EEEECCCCCHH
T ss_conf 87515579688987644888784799961786537899999999999847984-----79977889999
No 489
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.52 E-value=0.26 Score=29.68 Aligned_cols=70 Identities=27% Similarity=0.395 Sum_probs=41.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHHHCCCCEE
Q ss_conf 7866895288740777999999987348--9984445743788731354217454202--45458999999860799769
Q gi|254780877|r 199 KNNPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIAGAKFRGE--FEERLKSLLCEIRSEDGEII 274 (853)
Q Consensus 199 k~n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--~e~r~~~i~~~~~~~~~~~i 274 (853)
+.|.+|||.+|+|||+|-..||+..--. |....+. +-+..+++.+.+- .|| |-.+=..+++++...+ +.|
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie--~~~g~sI~eIF~~---~GE~~FR~~E~~vl~~l~~~~-~~V 75 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIE--KRTGMSIAEIFEE---EGEEGFRRLETEVLKELLEED-NAV 75 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHH--HHHCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHCC-CEE
T ss_conf 9618997179997768999999981998022469999--9979699999999---828999999999999986269-959
No 490
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=95.51 E-value=0.012 Score=40.44 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=26.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 77546761078864435699872985333335789999999633
Q gi|254780877|r 152 VNAEQGFDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLS 195 (853)
Q Consensus 152 ~~~e~~~~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~ 195 (853)
...+++..+++.+.- .-.-..+|||.=++.|.++|+-+-
T Consensus 100 ~~DPtn~~a~~~i~F-----~tg~~ve~v~v~ed~l~~~i~~~y 138 (577)
T TIGR02538 100 VSDPTNISALDDIKF-----ATGLNVEVVVVEEDKLSALIEKYY 138 (577)
T ss_pred EECCCCHHHHHHHHH-----HCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 757545688999874-----149679999727289999999985
No 491
>KOG2543 consensus
Probab=95.51 E-value=0.19 Score=30.69 Aligned_cols=162 Identities=21% Similarity=0.286 Sum_probs=89.9
Q ss_pred CCC-CCCHHHHHHHHHHHHCCC---CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE---EH-HHH---
Q ss_conf 533-333578999999963367---7786689528874077799999998734899844457437887---31-354---
Q gi|254780877|r 177 LDP-VIGRDDEMRRAIQVLSRR---TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL---DM-GAL--- 245 (853)
Q Consensus 177 LDP-VIGRe~EI~~~~~iL~r~---~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l---d~-~~l--- 245 (853)
+.| |-||+.+|+++...+.-+ .-++++|-|.+|.|||.++..+-.......|--...++--|.. -+ ..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHCCC
T ss_conf 45676546899999999847898666515799614787455999999860378630541577516799999999873567
Q ss_pred -HCCCCCCCHHHHHHHHHHHHHH------HCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHH-------HCCCCEEEE
Q ss_conf -2174542024545899999986------07997699963627730266655433588887653-------124660489
Q gi|254780877|r 246 -IAGAKFRGEFEERLKSLLCEIR------SEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPS-------LARGELHCI 311 (853)
Q Consensus 246 -~ag~~~rg~~e~r~~~i~~~~~------~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~-------LarG~l~~I 311 (853)
--|.+.+|.+|. +...+.-++ +.+..+.|+.|.+..|-. || +++| |. +-+-.+.+|
T Consensus 84 d~dg~~~~~~~en-~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-------~~-a~ll-~~l~~L~el~~~~~i~ii 153 (438)
T KOG2543 84 DKDGDKVEGDAEN-FSDFIYLLVQWPAATNRDQKVFLILDNADALRD-------MD-AILL-QCLFRLYELLNEPTIVII 153 (438)
T ss_pred CCCHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC-------CC-HHHH-HHHHHHHHHHCCCCEEEE
T ss_conf 8740555427999-999999998447764467449999747776630-------65-0788-999989987377736999
Q ss_pred EEEC--HHHHHHHHHCCHHHHHCCC--EEECCCCCHHHHHHHHHHHHH
Q ss_conf 9744--8999997300111320231--111157776789999999789
Q gi|254780877|r 312 GATT--LDEYRKYIEKDPALARRFQ--SLLVGEPTVTDTISILRGLKE 355 (853)
Q Consensus 312 gaTT--~~Eyrk~iEkD~Al~RRFq--~i~V~Eps~~~t~~iL~gl~~ 355 (853)
-.-+ +.-|.+. ...+. ++...++|++++..||..-.+
T Consensus 154 ls~~~~e~~y~~n-------~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543 154 LSAPSCEKQYLIN-------TGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred EECCCCHHHHHCC-------CCCCCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 8326667775214-------6777864785387788999999841783
No 492
>PRK13948 shikimate kinase; Provisional
Probab=95.51 E-value=0.17 Score=31.12 Aligned_cols=31 Identities=26% Similarity=0.171 Sum_probs=23.6
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6777866895288740777999999987348
Q gi|254780877|r 196 RRTKNNPVLIGDPGVGKTAIIEGLASRIING 226 (853)
Q Consensus 196 r~~k~n~~lvGe~GvGKtaive~la~~i~~~ 226 (853)
-|.+.|.+|||-+|+|||+|-.-||+++-..
T Consensus 7 p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~ 37 (182)
T PRK13948 7 PRPATFVALAGFMGTGKSRIGWELSRALALH 37 (182)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999818988999998899999999996959
No 493
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.51 E-value=0.018 Score=39.07 Aligned_cols=21 Identities=48% Similarity=0.719 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 689528874077799999998
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLASR 222 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~~ 222 (853)
++|+|++|||||+|+..+...
T Consensus 3 vvllGd~gVGKTsLi~rf~~~ 23 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997899999999829
No 494
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=95.50 E-value=0.047 Score=35.62 Aligned_cols=20 Identities=30% Similarity=0.738 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 68952887407779999999
Q gi|254780877|r 202 PVLIGDPGVGKTAIIEGLAS 221 (853)
Q Consensus 202 ~~lvGe~GvGKtaive~la~ 221 (853)
++++|++|||||+|+.-++.
T Consensus 3 IlllGDsgVGKTSL~~~~~~ 22 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICK 22 (202)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999899999999983
No 495
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.50 E-value=0.016 Score=39.43 Aligned_cols=47 Identities=34% Similarity=0.531 Sum_probs=35.9
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 36566512898726786168899999998723776530022447740345
Q gi|254780877|r 592 QDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641 (853)
Q Consensus 592 ~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~ 641 (853)
....+|. .++++|++|.|||.+++.+.+.+. ..+++++|--+|.+.|
T Consensus 7 ~~~~~Pk-ai~laG~pGAGKS~~~~~~~~~~~--~~~~v~In~D~~r~~~ 53 (191)
T pfam06414 7 PPQERPV-AVLLGGQPGAGKTELARALLEELG--GGNVVRIDPDELRTYH 53 (191)
T ss_pred CCCCCCE-EEEEECCCCCCHHHHHHHHHHHCC--CCCCEEECCHHHHHHH
T ss_conf 9876987-999957998888999999987537--8993897135878877
No 496
>PRK07667 uridine kinase; Provisional
Probab=95.50 E-value=0.031 Score=37.11 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCEEEE--EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
Q ss_conf 512898--72678616889999999872377653002244774034
Q gi|254780877|r 597 PMGSFM--FLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK 640 (853)
Q Consensus 597 p~~~fl--f~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~ 640 (853)
|-+.|+ -.|+||+|||.+|+.|++.|-....+++.+.|-.|--+
T Consensus 11 ~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~ 56 (190)
T PRK07667 11 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVE 56 (190)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 5986999977989788999999999998665983799966624265
No 497
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.49 E-value=0.26 Score=29.62 Aligned_cols=203 Identities=21% Similarity=0.257 Sum_probs=122.0
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHH--HHHHHHHCCCCCHHH-CCCE-----EEEEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 96336777866895288740777999--999987348998444-5743-----788731354217454202454589999
Q gi|254780877|r 192 QVLSRRTKNNPVLIGDPGVGKTAIIE--GLASRIINGDIPESL-KGKR-----LMALDMGALIAGAKFRGEFEERLKSLL 263 (853)
Q Consensus 192 ~iL~r~~k~n~~lvGe~GvGKtaive--~la~~i~~~~vp~~l-~~~~-----i~~ld~~~l~ag~~~rg~~e~r~~~i~ 263 (853)
.+-....++-.++.||.-=|||.... ||+..++.--.|-.- .+.+ =+-.|+|-=.+=...-.-|-.+|+++.
T Consensus 318 di~l~~~~~~liITGPNtGGKTv~LKtvgL~~lMaq~Gl~vPa~e~s~~~~f~~i~adIGD~QSie~~LSTFS~hm~~i~ 397 (780)
T PRK00409 318 DIELGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPAAEPSEIPVFKEVFADIGDEQSIEQSLSTFSGHMTNIV 397 (780)
T ss_pred EEEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCHHHHHHHHHHHH
T ss_conf 47866984189996898888563799999999999829997516898042346389982771213326524999999999
Q ss_pred HHHHHCCCCEEEEECCHHHHCCCCC--CCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCC
Q ss_conf 9986079976999636277302666--55433588887653124660489974489999973001113202311111577
Q gi|254780877|r 264 CEIRSEDGEIILFIDELHVLVGAGK--TDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEP 341 (853)
Q Consensus 264 ~~~~~~~~~~ilfide~h~~~gaG~--~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Ep 341 (853)
.-+..++.+.++.+|| +|+|. .+|+-=|--+|.-.+.+| ..+|.+|-..|-+.|-..++.++. --|+ -
T Consensus 398 ~il~~a~~~sLVLlDE----lG~GTDP~EGaALa~aile~l~~~~-~~~i~TTH~~~lK~~a~~~~~~~n----as~~-F 467 (780)
T PRK00409 398 RILEKADENSLVLFDE----LGAGTDPDEGAALAISILDYLRKRG-AKIIATTHYKELKALKYNREGVEN----ASVE-F 467 (780)
T ss_pred HHHHHCCCCEEEEECC----CCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCCCEE----EEEE-E
T ss_conf 9997389980881232----3589984565999999999999779-979994776999999727998189----8888-7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 76789999999789865414961015899999863332024576747789999999998754102221457887999997
Q gi|254780877|r 342 TVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIIC 421 (853)
Q Consensus 342 s~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~ 421 (853)
+. ..++|.|--..|+-=.-.|++-|-+|- ||. +++++|-+.+.-.. .++++.|..
T Consensus 468 D~-------~tl~PtYrl~~G~pG~S~A~~IA~rlG--------lp~---~ii~~A~~~l~~~~-------~~~~~li~~ 522 (780)
T PRK00409 468 DE-------ETLRPTYRLLIGIPGRSNAFEIAKRLG--------LPP---NIIEEAKKVYGEDK-------EKLNELIAS 522 (780)
T ss_pred CC-------CCCCCCEEEECCCCCCCHHHHHHHHHC--------CCH---HHHHHHHHHHCCCH-------HHHHHHHHH
T ss_conf 40-------237860687059997636999999929--------799---99999998856316-------589999999
Q ss_pred HHHHHHHH
Q ss_conf 44569998
Q gi|254780877|r 422 LKIEKEAL 429 (853)
Q Consensus 422 l~~e~~~L 429 (853)
++.+...+
T Consensus 523 l~~~~~~~ 530 (780)
T PRK00409 523 LEELEREL 530 (780)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 498
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=95.49 E-value=0.037 Score=36.48 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC--CCCCCCCHHHH
Q ss_conf 89999999999874101236566512898726786168899999998723776--53002244774
Q gi|254780877|r 574 SAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE--NSMIRIDMSEY 637 (853)
Q Consensus 574 ~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~--~~lir~dMsey 637 (853)
++.++.+..-+.. ..+++|+. ..-.+||+|+|||.+|+.|++.|-... ...+.+-|--|
T Consensus 15 ~~~~~~~~~~~~~----~~~~~rR~-lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGF 75 (230)
T PRK09270 15 DELIEEVHKPLML----AAEPQRRT-VVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGF 75 (230)
T ss_pred HHHHHHHHHHHHH----HCCCCCEE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 5668999999987----15999718-9999899988999999999999862379985799736533
No 499
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.027 Score=37.65 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 28987267861688999999987237765
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDEN 627 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~ 627 (853)
|+++++||+|||||.++--||..|-....
T Consensus 207 ~VIaLVGvnGvGKTTTiAKLA~~l~~~gk 235 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNR 235 (407)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 08999899989789999999999997799
No 500
>KOG0478 consensus
Probab=95.46 E-value=0.27 Score=29.53 Aligned_cols=171 Identities=21% Similarity=0.304 Sum_probs=87.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCC-------HHHC-------CCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 866895288740777999999987348998-------4445-------74378873135421745420245458999999
Q gi|254780877|r 200 NNPVLIGDPGVGKTAIIEGLASRIINGDIP-------ESLK-------GKRLMALDMGALIAGAKFRGEFEERLKSLLCE 265 (853)
Q Consensus 200 ~n~~lvGe~GvGKtaive~la~~i~~~~vp-------~~l~-------~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~ 265 (853)
-|.+|+|+||.||+-|.+..++..-.|.-. -.|. +.+=|-|.-|+||.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVL------------------ 524 (804)
T KOG0478 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVL------------------ 524 (804)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHCCEEEEEECCCCCEEEEECCCEEE------------------
T ss_conf 22899469986789999999974775404058763022003567765765546650484897------------------
Q ss_pred HHHCCCCEEEEECCHHHHCCCCCC---------CCCCCHHHHHHHHHCCCCEEEEEEECHHH----HHHHH----HCCHH
Q ss_conf 860799769996362773026665---------54335888876531246604899744899----99973----00111
Q gi|254780877|r 266 IRSEDGEIILFIDELHVLVGAGKT---------DGAMDASNLLKPSLARGELHCIGATTLDE----YRKYI----EKDPA 328 (853)
Q Consensus 266 ~~~~~~~~ilfide~h~~~gaG~~---------~g~~Daan~LKP~LarG~l~~IgaTT~~E----yrk~i----EkD~A 328 (853)
++ +=|-.|||+.-+-.+-++ .=++--|-++-..=|| -.+|++.-|.+ .+|+| .=-+-
T Consensus 525 ---SD-~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR--~SVLAaANP~~skynp~k~i~eNI~Lppt 598 (804)
T KOG0478 525 ---SD-NGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNAR--CSVLAAANPIRSKYNPNKSIIENINLPPT 598 (804)
T ss_pred ---CC-CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC--CEEEEEECCCCCCCCCCCCHHHCCCCCHH
T ss_conf ---28-9657711233332778899999998763117430223421665--30344535432457999762321678805
Q ss_pred HHHCCCEEE--CCCCCHHHHHHHHHHHHHHH-HHH---CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 320231111--15777678999999978986-541---4961015899999863332024576747789999
Q gi|254780877|r 329 LARRFQSLL--VGEPTVTDTISILRGLKERY-EQH---HKVRISDSALVSAAVLSNRYITDRFLPDKAIDLM 394 (853)
Q Consensus 329 l~RRFq~i~--V~Eps~~~t~~iL~gl~~~y-E~~---H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDll 394 (853)
|-+||.-|. ++.|++..-..+-..+...| |.- -.+.+....+...+..+.+-|+-+-.|+..--|+
T Consensus 599 LLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~ 670 (804)
T KOG0478 599 LLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALI 670 (804)
T ss_pred HHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 643233789984275326778999999984145552102577868999999999742578655689999999
Done!