HHsearch alignment for GI: 254780877 and conserved domain: pfam00004
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.06 E-value=3.4e-10 Score=101.86 Aligned_cols=115 Identities=35% Similarity=0.533 Sum_probs=78.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCC---CCCCHHHHCCCCCEEEEH
Q ss_conf 98726786168899999998723776530022447740345320130477112035667---742113221564102202
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG---GALTEAVRRHPYQVVLFD 677 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~g---g~Lte~vr~~P~sVil~D 677 (853)
T Consensus 1 iLl~GppGtGKT~~a~~la~~~---~~~~~~v~~~~~~~------------~~~g~~~~~i~~~f~~a~~~~p-~Il~iD 64 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL---GAPFIEISGSELVS------------KYVGESEKRLRELFEAAKKLAP-CVIFID 64 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH---CCCCEECCCCCCCC------------CCCCHHHHHHHHHHHHHHHCCC-CEEEEC
T ss_conf 9878999999999999999997---89853324201222------------3345068889999999997499-189831
Q ss_pred HHHHCCH-----------HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCH
Q ss_conf 1441498-----------99999999840457887999778303315595485126876403267999999999862885
Q gi|254780877|r 678 EIEKAHS-----------DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKP 746 (853)
Q Consensus 678 EiEKah~-----------~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~p 746 (853)
T Consensus 65 e~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~--------~~~~~~v~~I~tTN~--------~------------~~ld~ 116 (131)
T pfam00004 65 EIDALAGSRGSGGDSESRRVVNQLLTELDGF--------TSSLSKVIVIAATNR--------P------------DKLDP 116 (131)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC--------CCCCCCEEEEEECCC--------H------------HHCCH
T ss_conf 1677751678888875132687899998502--------246887699997599--------0------------44997
Q ss_pred HHH-CCCCCEEECC
Q ss_conf 772-6668158628
Q gi|254780877|r 747 EFL-NRLDEIILFE 759 (853)
Q Consensus 747 efl-nRid~iv~F~ 759 (853)
T Consensus 117 al~r~Rfd~~i~~p 130 (131)
T pfam00004 117 ALLRGRFDRIIEFP 130 (131)
T ss_pred HHHCCCCEEEEEEC
T ss_conf 79628332899806