HHsearch alignment for GI: 254780877 and conserved domain: pfam00437
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.63 E-value=7e-05 Score=58.64 Aligned_cols=95 Identities=25% Similarity=0.390 Sum_probs=63.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHCCCCCCC-HHHCCCCHHCCCCCCCCCCHHHHCCCCCEEE
Q ss_conf 12898726786168899999998723776530022-447740345320-1304771120356677421132215641022
Q gi|254780877|r 598 MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYMEKHSVS-RLIGSPPGYVGYEEGGALTEAVRRHPYQVVL 675 (853)
Q Consensus 598 ~~~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~e~~~vs-~LiGappGYvG~~~gg~Lte~vr~~P~sVil 675 (853)
T Consensus 139 ~~~ilIsG~TGSGKTT~l~all~~i~~~~~riitiED~~El~l~~~~~v~l~~-~~~~~t~~--~ll~~~LR~~P-D~Ii 214 (283)
T pfam00437 139 RGNILVSGGTGSGKTTLLYALLNEINTDDERIVTIEDPVEIQLEGPNQVQLNT-RLAGVTFA--DLLRAALRQRP-DRIM 214 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEECCCCCCEEEEEE-CCCCCCHH--HHHHHHHCCCC-CEEE
T ss_conf 97599988999988999999998408777627873378523179887899985-58876999--99999638899-9897
Q ss_pred EHHHHHCCHHHHHHHHHHHHCCEE
Q ss_conf 021441498999999998404578
Q gi|254780877|r 676 FDEIEKAHSDVHNILLQVLDDGRL 699 (853)
Q Consensus 676 ~DEiEKah~~v~~~llqild~G~l 699 (853)
T Consensus 215 vGEiR~--~Ea~~~-l~a~~TGH~ 235 (283)
T pfam00437 215 VGEIRD--GETADI-LRAANTGHP 235 (283)
T ss_pred ECCCCC--HHHHHH-HHHHHCCCC
T ss_conf 578699--899999-999975998