HHsearch alignment for GI: 254780877 and conserved domain: pfam00910

>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.

Probab=97.47  E-value=0.0002  Score=54.85  Aligned_cols=95  Identities=28%  Similarity=0.458  Sum_probs=59.1

Q ss_pred             EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCC---CCHHCCCCCCCCCCHHHHCCCCCEEEEHH
Q ss_conf             872678616889999999872377653002244774034532013047---71120356677421132215641022021
Q gi|254780877|r  602 MFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGS---PPGYVGYEEGGALTEAVRRHPYQVVLFDE  678 (853)
Q Consensus       602 lf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGa---ppGYvG~~~gg~Lte~vr~~P~sVil~DE  678 (853)
T Consensus         2 ~l~G~~G~GKS~~a~~la~~~~~~---~------~~~~~~~~Y~~~~~~~~wdgY~g-------------q--~vvi~DD   57 (105)
T pfam00910         2 WLYGPPGCGKSTLAKYLARALLDH---L------GLPKKDSVYSRNPDDDFWDGYTG-------------Q--PVVIIDD   57 (105)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH---H------CCCCCCCEEECCCCCCCCCCCCC-------------C--EEEEEEC
T ss_conf             897999898899999999999998---3------77878977967887765678899-------------8--5799965


Q ss_pred             HHHCCHH--HHHHHHHHHHCCEEE----CCCCCEEECCCCEEEECCCH
Q ss_conf             4414989--999999984045788----79997783033155954851
Q gi|254780877|r  679 IEKAHSD--VHNILLQVLDDGRLT----DSQGRTVDFRNTLIIMTSNL  720 (853)
Q Consensus       679 iEKah~~--v~~~llqild~G~lt----d~~G~~v~f~n~iii~TsN~  720 (853)
T Consensus        58 ~~~~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~  105 (105)
T pfam00910        58 FGQNPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF  105 (105)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf             777888628899999875699838886676148884468889994799