HHsearch alignment for GI: 254780877 and conserved domain: pfam01057
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.63 E-value=0.014 Score=39.93 Aligned_cols=142 Identities=18% Similarity=0.302 Sum_probs=79.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCC-CEE
Q ss_conf 6512898726786168899999998723776530022447740345320130477112035667742113221564-102
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPY-QVV 674 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~-sVi 674 (853)
T Consensus 111 ~krN~i~~~Gp~~TGks~la~ai~~~~~~-------~g~v~~~-----------N~~fp-----------~~d~~~~~~~ 161 (271)
T pfam01057 111 GKRNTVWFYGPASTGKTNLAQAIAHAVPL-------YGCVNWT-----------NENFP-----------FNDCPNKLLI 161 (271)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC-------EEEECCC-----------CCCCC-----------CCCCCCCEEE
T ss_conf 88756999889876789999999986895-------2785178-----------77887-----------6446547899
Q ss_pred EEHHHHHCCHHHHHHHHHHHHCCE-EECCCC-CEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHH-HCCHHHHCC
Q ss_conf 202144149899999999840457-887999-77830331559548512687640326799999999986-288577266
Q gi|254780877|r 675 LFDEIEKAHSDVHNILLQVLDDGR-LTDSQG-RTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRS-AFKPEFLNR 751 (853)
Q Consensus 675 l~DEiEKah~~v~~~llqild~G~-ltd~~G-~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~-~f~peflnR 751 (853)
T Consensus 162 wwee-~~~~~~~ve~~r~il~G~~i~vD~k~k~~~~l~~~PviiTsn~di~~v~~g~~-~s~~Ha~~Lk~rm~~~~~~~~ 239 (271)
T pfam01057 162 WWEE-GLMTVKVVELAKAILGGTDVRVDQKCKGSVEIEPTPVIITSNHDITLVVDGNT-TSFEHAQPLKDRMYKFNLTKR 239 (271)
T ss_pred EECC-CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCEEEEEECCC-CCHHHHHHHHHHEEEEEECCC
T ss_conf 9807-88718899999997299962563478980023799789982785799986875-357777787653689885767
Q ss_pred CCCEEECCCCCHHHHHHHH
Q ss_conf 6815862889989999999
Q gi|254780877|r 752 LDEIILFEKLRKEDMAKIV 770 (853)
Q Consensus 752 id~iv~F~~l~~~~~~~i~ 770 (853)
T Consensus 240 l~~~--fg~it~~d~~~f~ 256 (271)
T pfam01057 240 LPPA--FGLITKEDVRQFL 256 (271)
T ss_pred CCCC--CCCCCHHHHHHHH
T ss_conf 4887--7854899999999