HHsearch alignment for GI: 254780877 and conserved domain: pfam02861
>pfam02861 Clp_N Clp amino terminal domain. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site.
Probab=97.41 E-value=0.00043 Score=52.25 Aligned_cols=51 Identities=39% Similarity=0.668 Sum_probs=45.5
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999719870259998766872775178-899975999899999999873
Q gi|254780877|r 94 SEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLR 144 (853)
Q Consensus 94 A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~ 144 (853)
T Consensus 1 A~~~A~~~~~~~i~~EHlLlall~~~~~~~~~il~~~g~~~~~l~~~i~~~~ 52 (53)
T pfam02861 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLL 52 (53)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9888978699853499999999865885899999995989999999999870