HHsearch alignment for GI: 254780877 and conserved domain: pfam02861

>pfam02861 Clp_N Clp amino terminal domain. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site.
Probab=97.41  E-value=0.00043  Score=52.25  Aligned_cols=51  Identities=39%  Similarity=0.668  Sum_probs=45.5

Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999719870259998766872775178-899975999899999999873
Q gi|254780877|r   94 SEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLR  144 (853)
Q Consensus        94 A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~  144 (853)
T Consensus         1 A~~~A~~~~~~~i~~EHlLlall~~~~~~~~~il~~~g~~~~~l~~~i~~~~   52 (53)
T pfam02861         1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLL   52 (53)
T ss_pred             CHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             9888978699853499999999865885899999995989999999999870