>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.

Probab=99.55 E-value=6.7e-13 Score=123.79 Aligned_cols=195 Identities=20% Similarity=0.298 Sum_probs=127.3 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH Q ss_conf 76745948999999999987410123656651289872678616889999999872377653002244774034532013 Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL 646 (853) Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L 646 (853) T Consensus 23 l~e~vGQehl~~~l~~~i~a~----~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~---~~~~~~s~~~i~~---~~di 92 (234) T pfam05496 23 LDEYIGQEKVKENLKIFIEAA----KKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALEK---PGDL 92 (234) T ss_pred HHHCCCHHHHHHHHHHHHHHH----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCEEEECCHHHHH---HHHH T ss_conf 666069499999999999988----74277766278878999988899999998408---7537614266643---8999 Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEE--CCC---CCEEECCCC---EEEECC Q ss_conf 047711203566774211322156410220214414989999999984045788--799---977830331---559548 Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLT--DSQ---GRTVDFRNT---LIIMTS 718 (853) Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~lt--d~~---G~~v~f~n~---iii~Ts 718 (853) T Consensus 93 ~------------~~l~---~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATT 157 (234) T pfam05496 93 A------------AILT---NLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATT 157 (234) T ss_pred H------------HHHH---HCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECC T ss_conf 9------------9998---458998899966543587688744553346169999636766324652689759985215 Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHH Q ss_conf 51268764032679999999998628857726668158628899899999999999999999985798999988999999 Q gi|254780877|r 719 NLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWL 798 (853) Q Consensus 719 N~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l 798 (853) T Consensus 158 e---------------------~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~---------l~i~i~~eal~~I 207 (234) T pfam05496 158 R---------------------AGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARI---------LGVEIDEEGAAEI 207 (234) T ss_pred C---------------------CCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHH---------CCCCCCHHHHHHH T ss_conf 6---------------------664777799762112442468999999999999998---------3999599999999 Q ss_pred HHCCCCCCCCCHHHHHHHHHH Q ss_conf 970898220621579999987 Q gi|254780877|r 799 SCRGYDPSYGARPLKRVIQRY 819 (853) Q Consensus 799 ~~~~~~~~~GaR~l~r~i~~~ 819 (853) T Consensus 208 A~~s---~Gd~R~ALnlLe~v 225 (234) T pfam05496 208 ARRS---RGTPRIANRLLRRV 225 (234) T ss_pred HHHC---CCCHHHHHHHHHHH T ss_conf 9977---99899998999999

HHsearch alignment for GI: 254780877 and conserved domain: pfam05496