HHsearch alignment for GI: 254780877 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.53  E-value=4.1e-13  Score=125.56  Aligned_cols=193  Identities=22%  Similarity=0.287  Sum_probs=126.5

Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHCC--C--C--CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEE
Q ss_conf             56998729853333357899999996336--7--7--7866895288740777999999987348998444574378873
Q gi|254780877|r  168 LTEEARNGKLDPVIGRDDEMRRAIQVLSR--R--T--KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALD  241 (853)
Q Consensus       168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r--~--~--k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld  241 (853)
T Consensus        14 ~~~~lRP~~l~e~vGQehl~-~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~----------~~~~~~s   82 (234)
T pfam05496        14 VERSLRPRRLDEYIGQEKVK-ENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITS   82 (234)
T ss_pred             HHHCCCCCCHHHCCCHHHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEEC
T ss_conf             78554989766606949999-999999998874277766278878999988899999998408----------7537614


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCE-------------
Q ss_conf             1354217454202454589999998607997699963627730266655433588887653124660-------------
Q gi|254780877|r  242 MGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGEL-------------  308 (853)
Q Consensus       242 ~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l-------------  308 (853)
T Consensus        83 ~~~----------i-~~~~di~~~l~~~~~~~ILFIDEIHr~n--------K~qqd~Llp~vE~g~i~i~ig~~~~A~~~  143 (234)
T pfam05496        83 GPA----------L-EKPGDLAAILTNLEPGDVLFIDEIHRLN--------RAVEEILYPAMEDFRLDIVIGKGPSARSI  143 (234)
T ss_pred             CHH----------H-HHHHHHHHHHHHCCCCCEEEEECHHHCC--------HHHHHHCCCCCCCCEEEEEECCCCCCEEE
T ss_conf             266----------6-4389999999845899889996654358--------76887445533461699996367663246


Q ss_pred             -------EEEEEECHHHHHHHHHCCHHHHHCCCEEE-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             -------48997448999997300111320231111-1577767899999997898654149610158999998633320
Q gi|254780877|r  309 -------HCIGATTLDEYRKYIEKDPALARRFQSLL-VGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY  380 (853)
Q Consensus       309 -------~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~-V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY  380 (853)
T Consensus       144 ~~e~P~FtLIgATTe~--~~---l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~----~l~i~i~~eal~~IA~~s~Gd  214 (234)
T pfam05496       144 RLDLPPFTLVGATTRA--GL---LTSPLRDRFGIVLRLEFYSVEELEEIVKRSAR----ILGVEIDEEGAAEIARRSRGT  214 (234)
T ss_pred             ECCCCCEEEEEECCCC--CC---CCHHHHHHHHHEEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCC
T ss_conf             5268975998521566--64---77779976211244246899999999999999----839995999999999977998


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             2457674778999999999875410
Q gi|254780877|r  381 ITDRFLPDKAIDLMDEASARVRMQI  405 (853)
Q Consensus       381 i~~r~lPDKAIDllDeA~A~~~i~~  405 (853)
T Consensus       215 ------~R~ALnlLe~v~d~a~~~~  233 (234)
T pfam05496       215 ------PRIANRLLRRVRDFAQVKG  233 (234)
T ss_pred             ------HHHHHHHHHHHHHHHHHHC
T ss_conf             ------9999899999999998734