HHsearch alignment for GI: 254780877 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.53 E-value=4.1e-13 Score=125.56 Aligned_cols=193 Identities=22% Similarity=0.287 Sum_probs=126.5
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCC--C--C--CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEE
Q ss_conf 56998729853333357899999996336--7--7--7866895288740777999999987348998444574378873
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSR--R--T--KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALD 241 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r--~--~--k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld 241 (853)
T Consensus 14 ~~~~lRP~~l~e~vGQehl~-~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~----------~~~~~~s 82 (234)
T pfam05496 14 VERSLRPRRLDEYIGQEKVK-ENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITS 82 (234)
T ss_pred HHHCCCCCCHHHCCCHHHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEEC
T ss_conf 78554989766606949999-999999998874277766278878999988899999998408----------7537614
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCE-------------
Q ss_conf 1354217454202454589999998607997699963627730266655433588887653124660-------------
Q gi|254780877|r 242 MGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGEL------------- 308 (853)
Q Consensus 242 ~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l------------- 308 (853)
T Consensus 83 ~~~----------i-~~~~di~~~l~~~~~~~ILFIDEIHr~n--------K~qqd~Llp~vE~g~i~i~ig~~~~A~~~ 143 (234)
T pfam05496 83 GPA----------L-EKPGDLAAILTNLEPGDVLFIDEIHRLN--------RAVEEILYPAMEDFRLDIVIGKGPSARSI 143 (234)
T ss_pred CHH----------H-HHHHHHHHHHHHCCCCCEEEEECHHHCC--------HHHHHHCCCCCCCCEEEEEECCCCCCEEE
T ss_conf 266----------6-4389999999845899889996654358--------76887445533461699996367663246
Q ss_pred -------EEEEEECHHHHHHHHHCCHHHHHCCCEEE-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf -------48997448999997300111320231111-1577767899999997898654149610158999998633320
Q gi|254780877|r 309 -------HCIGATTLDEYRKYIEKDPALARRFQSLL-VGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY 380 (853)
Q Consensus 309 -------~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~-V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY 380 (853)
T Consensus 144 ~~e~P~FtLIgATTe~--~~---l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~----~l~i~i~~eal~~IA~~s~Gd 214 (234)
T pfam05496 144 RLDLPPFTLVGATTRA--GL---LTSPLRDRFGIVLRLEFYSVEELEEIVKRSAR----ILGVEIDEEGAAEIARRSRGT 214 (234)
T ss_pred ECCCCCEEEEEECCCC--CC---CCHHHHHHHHHEEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCC
T ss_conf 5268975998521566--64---77779976211244246899999999999999----839995999999999977998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2457674778999999999875410
Q gi|254780877|r 381 ITDRFLPDKAIDLMDEASARVRMQI 405 (853)
Q Consensus 381 i~~r~lPDKAIDllDeA~A~~~i~~ 405 (853)
T Consensus 215 ------~R~ALnlLe~v~d~a~~~~ 233 (234)
T pfam05496 215 ------PRIANRLLRRVRDFAQVKG 233 (234)
T ss_pred ------HHHHHHHHHHHHHHHHHHC
T ss_conf ------9999899999999998734