HHsearch alignment for GI: 254780877 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=100.00 E-value=0 Score=411.47 Aligned_cols=160 Identities=68% Similarity=1.107 Sum_probs=152.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEE
Q ss_conf 65128987267861688999999987237765300224477403453201304771120356677421132215641022
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVL 675 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil 675 (853)
T Consensus 1 ~p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~Vil 80 (168)
T pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80 (168)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEE
T ss_conf 98379998898998999999999999679853448855756542569998705899872624265078999838984898
Q ss_pred EHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHC--------CHHHHHHHHHHHHHHHCCHH
Q ss_conf 0214414989999999984045788799977830331559548512687640--------32679999999998628857
Q gi|254780877|r 676 FDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIE--------DGDSVHDKVMGIVRSAFKPE 747 (853)
Q Consensus 676 ~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~--------~~~~~~~~~~~~l~~~f~pe 747 (853)
T Consensus 81 lDEIeKa~~~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 160 (168)
T pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISDASRLGKSPDYELLKELVMDLLKKGFIPE 160 (168)
T ss_pred EHHHHHHCHHHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 65776658999999998705870636999678446479997687372999986304678547999999999998698846
Q ss_pred HHCCCCCE
Q ss_conf 72666815
Q gi|254780877|r 748 FLNRLDEI 755 (853)
Q Consensus 748 flnRid~i 755 (853)
T Consensus 161 flnRid~i 168 (168)
T pfam07724 161 FLGRLPII 168 (168)
T ss_pred HHCCCCCC
T ss_conf 73575839