HHsearch alignment for GI: 254780877 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.45 E-value=3e-07 Score=77.86 Aligned_cols=116 Identities=23% Similarity=0.273 Sum_probs=65.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCC---CCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 668952887407779999999873489984445743788731354217454---20245458999999860799769996
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKF---RGEFEERLKSLLCEIRSEDGEIILFI 277 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~---rg~~e~r~~~i~~~~~~~~~~~ilfi 277 (853)
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~--~~i~~~-~~~~~~dl~G~~~~~~~~~~~~~--g~l~~a~-~-~-g~vl~l 72 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPV--FYVQLT-RDTTEEDLKGRRNIANGTTSWVD--GPLVRAA-R-E-GEIAVL 72 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCC--HHHCCC-CCCCHHHCCCCEECCCCCEEEEC--CHHHCCC-C-C-CCEEEE
T ss_conf 9899989975699999999998079831--112146-55652220573423799357815--5141010-1-2-868996
Q ss_pred CCHHHHCCCCCCCCCCCHHHHHHHHHCCC--------------------CEEEEEEECHHHHHHHHHCCHHHHHCC
Q ss_conf 36277302666554335888876531246--------------------604899744899999730011132023
Q gi|254780877|r 278 DELHVLVGAGKTDGAMDASNLLKPSLARG--------------------ELHCIGATTLDEYRKYIEKDPALARRF 333 (853)
Q Consensus 278 de~h~~~gaG~~~g~~Daan~LKP~LarG--------------------~l~~IgaTT~~Eyrk~iEkD~Al~RRF 333 (853)
T Consensus 73 DEin~a--------~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~-~~g~~~l~~Al~~RF 139 (139)
T pfam07728 73 DEINRA--------NPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL-DRGLNELSPALRSRF 139 (139)
T ss_pred CCHHHC--------CHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC-CCCCCCCCHHHHCCC
T ss_conf 343448--------9999999999974896983689727336666789996999975896-547800998997509