HHsearch alignment for GI: 254780877 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.15 E-value=0.0001 Score=57.21 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=68.4
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCEEE-CCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHC
Q ss_conf 10220214414989999999984045788-79997783033155954851268764032679999999998628857726
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGRLT-DSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLN 750 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~lt-d~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefln 750 (853)
T Consensus 235 Gl~efvE~~K~~~~~L~~lL~atQE~~i~~~~~~~~i~~D-~vIiahsNe-~E~~~f------------~~~~~~eA~~d 300 (358)
T pfam08298 235 GLMEFVEMFKAPIKVLHPLLTATQEGNYNSTEKFSAIPFD-GIILAHSNE-SEWNSF------------KSNKNNEAFLD 300 (358)
T ss_pred CCEEEHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEECC-EEEECCCCH-HHHHHH------------HCCCCCHHHHC
T ss_conf 7554098761829999998522124622477875603314-268768984-999987------------44864346656
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-EEEECHHHHHHHHH
Q ss_conf 668158628899899999999999999999985798-99998899999997
Q gi|254780877|r 751 RLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNI-SMDFDDQVIDWLSC 800 (853)
Q Consensus 751 Rid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i-~l~~~~~~~~~l~~ 800 (853)
T Consensus 301 R~~~v~vPY~lr~~eE~kIY~k~l~~-------s~~~~~h~APhtl~~aa~ 344 (358)
T pfam08298 301 RIVVIKVPYCLRVSEEIKIYEKLLKE-------SELADAHCAPHTLEVAAM 344 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCHHHHHHH
T ss_conf 37999676326717899999998630-------446677829648999999