HHsearch alignment for GI: 254780877 and conserved domain: pfam10431
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=99.50 E-value=4.6e-13 Score=125.14 Aligned_cols=85 Identities=49% Similarity=0.899 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99899999999999999999985798999988999999970898220621579999987334999999708688978899
Q gi|254780877|r 761 LRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIE 840 (853)
Q Consensus 761 l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~ 840 (853)
T Consensus 1 L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~~GAR~l~r~I~~~i~~~la~~il~~~~~~~~~i~ 80 (89)
T pfam10431 1 LSKEELRQIVDLQLKRLQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDTVR 80 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 98899999999999999999997890799868999999983567567947899999999999999999849899979999
Q ss_pred EEEEC
Q ss_conf 99989
Q gi|254780877|r 841 VFVDD 845 (853)
Q Consensus 841 i~~~~ 845 (853)
T Consensus 81 i~~~~ 85 (89)
T pfam10431 81 VDVDD 85 (89)
T ss_pred EEECC
T ss_conf 97158