HHsearch alignment for GI: 254780877 and conserved domain: smart00350

Probab=97.96  E-value=0.00036  Score=52.81  Aligned_cols=221  Identities=15%  Similarity=0.214  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCCCCCC--EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             235547767459489999999999874-10123656651--289872678616889999999872377653002244774
Q gi|254780877|r  561 RIETEISKSVIGQSAAVESVSNALRRF-RAGLQDPQRPM--GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY  637 (853)
Q Consensus       561 ~l~~~l~~~v~gq~~ai~~v~~~~~~~-~~gl~~~~~p~--~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey  637 (853)
T Consensus       196 ~L~~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~ihiLLvGDPGtgKSqlLk~~~~ia---prsvytsG~---  269 (509)
T smart00350      196 RLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTA---PRAVYTTGK---  269 (509)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHC---CCEEEEECC---
T ss_conf             99985497323878899999999708876648988504154149984699823629999999858---860687344---


Q ss_pred             CCCCCCCHHHCCCC-HHCC---CCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCC-EEEC-CC
Q ss_conf             03453201304771-1203---56677421132215641022021441498999999998404578879997-7830-33
Q gi|254780877|r  638 MEKHSVSRLIGSPP-GYVG---YEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGR-TVDF-RN  711 (853)
Q Consensus       638 ~e~~~vs~LiGapp-GYvG---~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~-~v~f-~n  711 (853)
T Consensus       270 --gsS~aGLTaav~rd~~~ge~~leaGALVl----AD~GiccIDEfdKm~~~dr~alhEaMEQQtisiaKaGi~~tL~aR  343 (509)
T smart00350      270 --GSSAVGLTAAVTRDPETREFTLEGGALVL----ADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNAR  343 (509)
T ss_pred             --CCCCCCCEEEEEECCCCCCEEECCCCEEC----CCCCEEEEEEHHHCCHHHHHHHHHHHHHCEEEEECCCEEEEEECC
T ss_conf             --45557706899981788837872564120----567547852132078778999999997487787437517998557


Q ss_pred             CEEEECCCH-HHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCC-CCHHHHHHHHHHHHH--------------
Q ss_conf             155954851-2687640326799999999986288577266681586288-998999999999999--------------
Q gi|254780877|r  712 TLIIMTSNL-GAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEK-LRKEDMAKIVRIQLG--------------  775 (853)
Q Consensus       712 ~iii~TsN~-G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~-l~~~~~~~i~~~~l~--------------  775 (853)
T Consensus       344 ~sVlAAaNP~~g~yd--~~~s~~e------ni~l~~~LLSRFDLIf~l~D~~~~~~D~~ia~hil~~h~~~~~~~~~~~~  415 (509)
T smart00350      344 CSVLAAANPIGGRYD--PKLTPEE------NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADE  415 (509)
T ss_pred             CEEEEEECCCCCCCC--CCCCHHH------HCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             359986556556378--8899999------46898035410238999615898788999999999987415887545568


Q ss_pred             ------HHHHHHH--HCCCEEEECHHHHHHHHHC
Q ss_conf             ------9999998--5798999988999999970
Q gi|254780877|r  776 ------RVLSLIK--ERNISMDFDDQVIDWLSCR  801 (853)
Q Consensus       776 ------~l~~~l~--~~~i~l~~~~~~~~~l~~~  801 (853)
T Consensus       416 ~~~~~~~lrkYI~yar~~~~P~ls~eA~~~i~~~  449 (509)
T smart00350      416 VPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKA  449 (509)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             8689999999999998628997899999999999