HHsearch alignment for GI: 254780877 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.23 E-value=9.5e-06 Score=65.67 Aligned_cols=128 Identities=23% Similarity=0.252 Sum_probs=79.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCC------------CCHHHHHHHHHHHHH
Q ss_conf 78668952887407779999999873489984445743788731354217454------------202454589999998
Q gi|254780877|r 199 KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKF------------RGEFEERLKSLLCEI 266 (853)
Q Consensus 199 k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~------------rg~~e~r~~~i~~~~ 266 (853)
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC-------CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 97899999997029999999998726689-------96899875998988898765300011221051999999999999
Q ss_pred HHCCCCEEEEECCHHHHCCCCCCCCC--CCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEEC
Q ss_conf 60799769996362773026665543--3588887653124660489974489999973001113202311111
Q gi|254780877|r 267 RSEDGEIILFIDELHVLVGAGKTDGA--MDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLV 338 (853)
Q Consensus 267 ~~~~~~~ilfide~h~~~gaG~~~g~--~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V 338 (853)
T Consensus 75 ~~~~-~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~----~~~~~~~~~~~~~~~~~~ 143 (148)
T smart00382 75 RKLK-PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND----EKDLGPALLRRRFDRRIV 143 (148)
T ss_pred HHCC-CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC----CCCCCHHHHCCCCCEEEE
T ss_conf 8449-98999827502147620799999999998517657899899995699----522498770744787999