RPSBLAST alignment for GI: 254780877 and conserved domain: TIGR00390

>gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. Length = 441

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 10/94 (10%)

Query: 562 IETEISKSVIGQSAAVESVSNALR-RFR-----AGLQDPQRPMGSFMFLGPTGVGKTELV 615
           I  E+ K +IGQ  A +SV+ ALR R+R       L+D   P    M +GPTGVGKTE+ 
Sbjct: 6   IVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILM-IGPTGVGKTEIA 64

Query: 616 KSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGS 649
           + LA+L        I+++ +++ E   V R + S
Sbjct: 65  RRLAKLA---NAPFIKVEATKFTEVGYVGRDVES 95