Query gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 51
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 22:25:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780878.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p7b_A Integral membrane chann 62.1 2.3 9.5E-05 21.2 1.2 28 12-39 62-89 (333)
2 1m56_D Cytochrome C oxidase; m 30.8 29 0.0012 15.4 3.3 22 2-23 27-48 (51)
3 1qle_D Cytochrome AA3, ccytoch 24.6 38 0.0016 14.8 3.3 21 2-22 19-39 (43)
4 2qks_A KIR3.1-prokaryotic KIR 20.2 47 0.002 14.3 3.6 26 13-38 45-70 (321)
5 3jyc_A Inward-rectifier K+ cha 19.7 48 0.002 14.3 3.2 22 13-34 47-68 (343)
6 2ppq_A HSK, HK, homoserine kin 15.1 63 0.0026 13.7 1.8 11 3-13 274-284 (322)
7 1xl4_A Inward rectifier potass 13.7 69 0.0029 13.5 3.7 23 13-35 49-71 (301)
8 1gxu_A Hydrogenase maturation 11.6 74 0.0031 13.3 1.3 12 1-12 20-31 (91)
9 1urr_A CG18505 protein; acylph 8.6 1.1E+02 0.0045 12.5 1.3 11 1-11 24-34 (102)
10 2vh7_A Acylphosphatase-1; hydr 7.4 1.2E+02 0.0051 12.2 1.3 11 1-11 21-31 (99)
No 1
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, cytosolic assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1
Probab=62.08 E-value=2.3 Score=21.18 Aligned_cols=28 Identities=36% Similarity=0.759 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 9999999999989999999999712314
Q gi|254780878|r 12 IFFIALLIVFSLSWFVFTLLYLIGDVRL 39 (51)
Q Consensus 12 iffiallivfslswfvftllyligdvrl 39 (51)
-++..+.++|-++|++|.++|+.||...
T Consensus 62 ~~l~~~~~~yl~~~~~FA~ly~l~~~~~ 89 (333)
T 1p7b_A 62 VFFASLAALFVVNNTLFALLYQLGDAPI 89 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999999998517553
No 2
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=30.80 E-value=29 Score=15.44 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3768899999999999999998
Q gi|254780878|r 2 GFRFWVSRIQIFFIALLIVFSL 23 (51)
Q Consensus 2 gfrfwvsriqiffiallivfsl 23 (51)
||--|+.|.-|.-|++||-..+
T Consensus 27 gFik~~t~~~i~ii~iLiFlAi 48 (51)
T 1m56_D 27 GFVRMVTWAAVVIVAALIFLAL 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 3
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=24.58 E-value=38 Score=14.82 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 376889999999999999999
Q gi|254780878|r 2 GFRFWVSRIQIFFIALLIVFS 22 (51)
Q Consensus 2 gfrfwvsriqiffiallivfs 22 (51)
||--|+.|.-|.-|++||-..
T Consensus 19 gFik~~t~~~i~~i~~liFlA 39 (43)
T 1qle_D 19 GFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 4
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel, selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=20.21 E-value=47 Score=14.34 Aligned_cols=26 Identities=35% Similarity=0.731 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 99999999998999999999971231
Q gi|254780878|r 13 FFIALLIVFSLSWFVFTLLYLIGDVR 38 (51)
Q Consensus 13 ffiallivfslswfvftllyligdvr 38 (51)
++..+...+-+.|+.|.++|++.+..
T Consensus 45 ~ll~~~~~yl~~~~~Fa~ly~~~~~~ 70 (321)
T 2qks_A 45 FFVSLAVLFLLLNTAFATLYMLGSAP 70 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999865157
No 5
>3jyc_A Inward-rectifier K+ channel KIR2.2; A transmembrane pore and A cytoplasmic pore, metal transport; 3.11A {Gallus gallus}
Probab=19.66 E-value=48 Score=14.27 Aligned_cols=22 Identities=23% Similarity=0.830 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999899999999997
Q gi|254780878|r 13 FFIALLIVFSLSWFVFTLLYLI 34 (51)
Q Consensus 13 ffiallivfslswfvftllyli 34 (51)
++....+.|-++|.+|..+|..
T Consensus 47 ~llif~~~yl~~~~lFa~ly~~ 68 (343)
T 3jyc_A 47 MLLLFSLAFLVSWLLFGLIFWL 68 (343)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 6
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=15.08 E-value=63 Score=13.68 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 76889999999
Q gi|254780878|r 3 FRFWVSRIQIF 13 (51)
Q Consensus 3 frfwvsriqif 13 (51)
.|||+||+.-+
T Consensus 274 lrf~l~rl~~~ 284 (322)
T 2ppq_A 274 LRFFLTRLYDW 284 (322)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999887
No 7
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying K+ channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wln_A 2wli_A
Probab=13.74 E-value=69 Score=13.46 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999998999999999971
Q gi|254780878|r 13 FFIALLIVFSLSWFVFTLLYLIG 35 (51)
Q Consensus 13 ffiallivfslswfvftllylig 35 (51)
+++...++|-++|.+|.++|+..
T Consensus 49 ~l~~~~~~yl~~~~~Fa~ly~~~ 71 (301)
T 1xl4_A 49 FITLITGLYLVTNALFALAYLAC 71 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999764
No 8
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=11.57 E-value=74 Score=13.32 Aligned_cols=12 Identities=33% Similarity=0.611 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHH
Q ss_conf 937688999999
Q gi|254780878|r 1 MGFRFWVSRIQI 12 (51)
Q Consensus 1 mgfrfwvsriqi 12 (51)
.|||.|+.+.-.
T Consensus 20 VGFR~~~~~~A~ 31 (91)
T 1gxu_A 20 VGFRPFVWQLAQ 31 (91)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 068899999999
No 9
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=8.56 E-value=1.1e+02 Score=12.48 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=7.4
Q ss_pred CCHHHHHHHHH
Q ss_conf 93768899999
Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51)
Q Consensus 1 mgfrfwvsriq 11 (51)
.|||.|+.++-
T Consensus 24 VGFR~~~~~~A 34 (102)
T 1urr_A 24 VFFRKHTSHEA 34 (102)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 58269999999
No 10
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=7.38 E-value=1.2e+02 Score=12.19 Aligned_cols=11 Identities=18% Similarity=-0.001 Sum_probs=7.3
Q ss_pred CCHHHHHHHHH
Q ss_conf 93768899999
Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51)
Q Consensus 1 mgfrfwvsriq 11 (51)
.|||.|+.++-
T Consensus 21 VGFR~~~~~~A 31 (99)
T 2vh7_A 21 VFFRKHTQAEG 31 (99)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 68479999999
Done!