Query         gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 51
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 22:25:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780878.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1p7b_A Integral membrane chann  62.1     2.3 9.5E-05   21.2   1.2   28   12-39     62-89  (333)
  2 1m56_D Cytochrome C oxidase; m  30.8      29  0.0012   15.4   3.3   22    2-23     27-48  (51)
  3 1qle_D Cytochrome AA3, ccytoch  24.6      38  0.0016   14.8   3.3   21    2-22     19-39  (43)
  4 2qks_A KIR3.1-prokaryotic KIR   20.2      47   0.002   14.3   3.6   26   13-38     45-70  (321)
  5 3jyc_A Inward-rectifier K+ cha  19.7      48   0.002   14.3   3.2   22   13-34     47-68  (343)
  6 2ppq_A HSK, HK, homoserine kin  15.1      63  0.0026   13.7   1.8   11    3-13    274-284 (322)
  7 1xl4_A Inward rectifier potass  13.7      69  0.0029   13.5   3.7   23   13-35     49-71  (301)
  8 1gxu_A Hydrogenase maturation   11.6      74  0.0031   13.3   1.3   12    1-12     20-31  (91)
  9 1urr_A CG18505 protein; acylph   8.6 1.1E+02  0.0045   12.5   1.3   11    1-11     24-34  (102)
 10 2vh7_A Acylphosphatase-1; hydr   7.4 1.2E+02  0.0051   12.2   1.3   11    1-11     21-31  (99)

No 1  
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, cytosolic assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1
Probab=62.08  E-value=2.3  Score=21.18  Aligned_cols=28  Identities=36%  Similarity=0.759  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             9999999999989999999999712314
Q gi|254780878|r   12 IFFIALLIVFSLSWFVFTLLYLIGDVRL   39 (51)
Q Consensus        12 iffiallivfslswfvftllyligdvrl   39 (51)
                      -++..+.++|-++|++|.++|+.||...
T Consensus        62 ~~l~~~~~~yl~~~~~FA~ly~l~~~~~   89 (333)
T 1p7b_A           62 VFFASLAALFVVNNTLFALLYQLGDAPI   89 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSSSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999999999999998517553


No 2  
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=30.80  E-value=29  Score=15.44  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3768899999999999999998
Q gi|254780878|r    2 GFRFWVSRIQIFFIALLIVFSL   23 (51)
Q Consensus         2 gfrfwvsriqiffiallivfsl   23 (51)
                      ||--|+.|.-|.-|++||-..+
T Consensus        27 gFik~~t~~~i~ii~iLiFlAi   48 (51)
T 1m56_D           27 GFVRMVTWAAVVIVAALIFLAL   48 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999


No 3  
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=24.58  E-value=38  Score=14.82  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=16.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             376889999999999999999
Q gi|254780878|r    2 GFRFWVSRIQIFFIALLIVFS   22 (51)
Q Consensus         2 gfrfwvsriqiffiallivfs   22 (51)
                      ||--|+.|.-|.-|++||-..
T Consensus        19 gFik~~t~~~i~~i~~liFlA   39 (43)
T 1qle_D           19 GFIKGATWVSILSIAVLVFLA   39 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999


No 4  
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel, selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=20.21  E-value=47  Score=14.34  Aligned_cols=26  Identities=35%  Similarity=0.731  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             99999999998999999999971231
Q gi|254780878|r   13 FFIALLIVFSLSWFVFTLLYLIGDVR   38 (51)
Q Consensus        13 ffiallivfslswfvftllyligdvr   38 (51)
                      ++..+...+-+.|+.|.++|++.+..
T Consensus        45 ~ll~~~~~yl~~~~~Fa~ly~~~~~~   70 (321)
T 2qks_A           45 FFVSLAVLFLLLNTAFATLYMLGSAP   70 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999865157


No 5  
>3jyc_A Inward-rectifier K+ channel KIR2.2; A transmembrane pore and A cytoplasmic pore, metal transport; 3.11A {Gallus gallus}
Probab=19.66  E-value=48  Score=14.27  Aligned_cols=22  Identities=23%  Similarity=0.830  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999899999999997
Q gi|254780878|r   13 FFIALLIVFSLSWFVFTLLYLI   34 (51)
Q Consensus        13 ffiallivfslswfvftllyli   34 (51)
                      ++....+.|-++|.+|..+|..
T Consensus        47 ~llif~~~yl~~~~lFa~ly~~   68 (343)
T 3jyc_A           47 MLLLFSLAFLVSWLLFGLIFWL   68 (343)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999


No 6  
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=15.08  E-value=63  Score=13.68  Aligned_cols=11  Identities=27%  Similarity=0.794  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHH
Q ss_conf             76889999999
Q gi|254780878|r    3 FRFWVSRIQIF   13 (51)
Q Consensus         3 frfwvsriqif   13 (51)
                      .|||+||+.-+
T Consensus       274 lrf~l~rl~~~  284 (322)
T 2ppq_A          274 LRFFLTRLYDW  284 (322)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999887


No 7  
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying K+ channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wln_A 2wli_A
Probab=13.74  E-value=69  Score=13.46  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999998999999999971
Q gi|254780878|r   13 FFIALLIVFSLSWFVFTLLYLIG   35 (51)
Q Consensus        13 ffiallivfslswfvftllylig   35 (51)
                      +++...++|-++|.+|.++|+..
T Consensus        49 ~l~~~~~~yl~~~~~Fa~ly~~~   71 (301)
T 1xl4_A           49 FITLITGLYLVTNALFALAYLAC   71 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999764


No 8  
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=11.57  E-value=74  Score=13.32  Aligned_cols=12  Identities=33%  Similarity=0.611  Sum_probs=8.4

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             937688999999
Q gi|254780878|r    1 MGFRFWVSRIQI   12 (51)
Q Consensus         1 mgfrfwvsriqi   12 (51)
                      .|||.|+.+.-.
T Consensus        20 VGFR~~~~~~A~   31 (91)
T 1gxu_A           20 VGFRPFVWQLAQ   31 (91)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
T ss_conf             068899999999


No 9  
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=8.56  E-value=1.1e+02  Score=12.48  Aligned_cols=11  Identities=27%  Similarity=0.120  Sum_probs=7.4

Q ss_pred             CCHHHHHHHHH
Q ss_conf             93768899999
Q gi|254780878|r    1 MGFRFWVSRIQ   11 (51)
Q Consensus         1 mgfrfwvsriq   11 (51)
                      .|||.|+.++-
T Consensus        24 VGFR~~~~~~A   34 (102)
T 1urr_A           24 VFFRKHTSHEA   34 (102)
T ss_dssp             SSHHHHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             58269999999


No 10 
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=7.38  E-value=1.2e+02  Score=12.19  Aligned_cols=11  Identities=18%  Similarity=-0.001  Sum_probs=7.3

Q ss_pred             CCHHHHHHHHH
Q ss_conf             93768899999
Q gi|254780878|r    1 MGFRFWVSRIQ   11 (51)
Q Consensus         1 mgfrfwvsriq   11 (51)
                      .|||.|+.++-
T Consensus        21 VGFR~~~~~~A   31 (99)
T 2vh7_A           21 VFFRKHTQAEG   31 (99)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             68479999999


Done!