Query gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 51
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:30:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780878.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 35.0 14 0.001 15.8 3.3 21 2-22 19-39 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 26.2 20 0.0015 15.0 3.3 21 2-22 18-38 (42)
3 d2ppqa1 d.144.1.6 (A:5-320) Ho 10.7 50 0.0037 12.9 1.8 11 3-13 270-280 (316)
4 d1gxua_ d.58.10.1 (A:) Hydroge 10.4 49 0.0036 13.0 1.3 11 1-11 17-27 (88)
5 d2acya_ d.58.10.1 (A:) Acylpho 9.9 53 0.0039 12.8 1.3 11 1-11 20-30 (98)
6 d1p7ba2 f.14.1.1 (A:36-151) In 7.8 67 0.0049 12.3 1.2 25 13-37 28-52 (116)
7 d1ulra_ d.58.10.1 (A:) Acylpho 7.7 67 0.0049 12.3 1.3 11 1-11 14-24 (87)
8 d1urra_ d.58.10.1 (A:) Acylpho 7.3 71 0.0052 12.2 1.3 11 1-11 19-29 (97)
9 d1apsa_ d.58.10.1 (A:) Acylpho 6.1 67 0.0049 12.3 0.4 11 1-11 20-30 (98)
10 d2e74h1 f.23.27.1 (H:3-29) Pet 6.1 83 0.006 11.8 1.9 11 14-24 6-16 (27)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=34.98 E-value=14 Score=15.82 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 376889999999999999999
Q gi|254780878|r 2 GFRFWVSRIQIFFIALLIVFS 22 (51)
Q Consensus 2 gfrfwvsriqiffiallivfs 22 (51)
||--|+.|.-|.-|++||-..
T Consensus 19 gFi~~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=26.15 E-value=20 Score=14.99 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 376889999999999999999
Q gi|254780878|r 2 GFRFWVSRIQIFFIALLIVFS 22 (51)
Q Consensus 2 gfrfwvsriqiffiallivfs 22 (51)
||--|+.|.-|.-|++||-..
T Consensus 18 gFik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 3
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.70 E-value=50 Score=12.93 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q ss_conf 76889999999
Q gi|254780878|r 3 FRFWVSRIQIF 13 (51)
Q Consensus 3 frfwvsriqif 13 (51)
.|||+||+.-+
T Consensus 270 lrf~lsrl~~~ 280 (316)
T d2ppqa1 270 LRFFLTRLYDW 280 (316)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999998887
No 4
>d1gxua_ d.58.10.1 (A:) Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP) {Escherichia coli [TaxId: 562]}
Probab=10.40 E-value=49 Score=12.98 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=8.0
Q ss_pred CCHHHHHHHHH
Q ss_conf 93768899999
Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51)
Q Consensus 1 mgfrfwvsriq 11 (51)
.|||.|+.+.-
T Consensus 17 VGFR~~v~~~A 27 (88)
T d1gxua_ 17 VGFRPFVWQLA 27 (88)
T ss_dssp SSHHHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 26879999999
No 5
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.86 E-value=53 Score=12.82 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=7.8
Q ss_pred CCHHHHHHHHH
Q ss_conf 93768899999
Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51)
Q Consensus 1 mgfrfwvsriq 11 (51)
.|||.|+.++-
T Consensus 20 VGFR~~v~~~A 30 (98)
T d2acya_ 20 VFFRKYTQAEG 30 (98)
T ss_dssp SSHHHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 58349999999
No 6
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=7.79 E-value=67 Score=12.30 Aligned_cols=25 Identities=40% Similarity=0.784 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999899999999997123
Q gi|254780878|r 13 FFIALLIVFSLSWFVFTLLYLIGDV 37 (51)
Q Consensus 13 ffiallivfslswfvftllyligdv 37 (51)
++..+...+-+.|.+|.++|..++-
T Consensus 28 ~l~~~~~~~~~~~~~fa~~y~~~~~ 52 (116)
T d1p7ba2 28 FFASLAALFVVNNTLFALLYQLGDA 52 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999998600
No 7
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus [TaxId: 274]}
Probab=7.74 E-value=67 Score=12.28 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=7.7
Q ss_pred CCHHHHHHHHH
Q ss_conf 93768899999
Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51)
Q Consensus 1 mgfrfwvsriq 11 (51)
.|||.|+.+.-
T Consensus 14 VGFR~~~~~~A 24 (87)
T d1ulra_ 14 VGYRAFAQKKA 24 (87)
T ss_dssp SSHHHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 16879999999
No 8
>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.28 E-value=71 Score=12.16 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=7.5
Q ss_pred CCHHHHHHHHH
Q ss_conf 93768899999
Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51)
Q Consensus 1 mgfrfwvsriq 11 (51)
.|||.|+.++-
T Consensus 19 VGFR~~~~~~A 29 (97)
T d1urra_ 19 VFFRKHTSHEA 29 (97)
T ss_dssp SSHHHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 68719999999
No 9
>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus) [TaxId: 9796]}
Probab=6.09 E-value=67 Score=12.29 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=7.2
Q ss_pred CCHHHHHHHHH
Q ss_conf 93768899999
Q gi|254780878|r 1 MGFRFWVSRIQ 11 (51)
Q Consensus 1 mgfrfwvsriq 11 (51)
.|||.|+.++-
T Consensus 20 VGFR~~~~~~A 30 (98)
T d1apsa_ 20 VCFRMYAEDEA 30 (98)
T ss_dssp CCCTTHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 68279999999
No 10
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.07 E-value=83 Score=11.81 Aligned_cols=11 Identities=55% Similarity=1.017 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999989
Q gi|254780878|r 14 FIALLIVFSLS 24 (51)
Q Consensus 14 fiallivfsls 24 (51)
..+||.||.-|
T Consensus 6 wv~llvvftws 16 (27)
T d2e74h1 6 WVALLVVFTWS 16 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHE
T ss_conf 75888876322
Done!