BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780878|ref|YP_003065291.1| hypothetical protein
CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62]
         (51 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040555|gb|ACT57351.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 51

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK 51
          MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK
Sbjct: 1  MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK 51


>gi|109900048|ref|YP_663303.1| aerobic respiration control sensor protein ArcB
          [Pseudoalteromonas atlantica T6c]
 gi|109702329|gb|ABG42249.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas
          atlantica T6c]
          Length = 781

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 4  RFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRL 39
          RF   R+ + F+ L +VF+++   F  +Y+IGDV+L
Sbjct: 20 RFGTLRVSVLFVILTLVFTMTGTYFLRIYIIGDVKL 55


>gi|332308096|ref|YP_004435947.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332175425|gb|AEE24679.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 781

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 4  RFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRL 39
          RF   R+ + F+ L ++F+++   F  +Y+IGDV+L
Sbjct: 20 RFGTLRVSVLFVILTLIFTMTGTYFLRIYIIGDVKL 55


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254780878|ref|YP_003065291.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040555|gb|ACT57351.1| hypothetical protein CLIBASIA_03875 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 51

 Score = 55.6 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK 51
          MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK
Sbjct: 1  MGFRFWVSRIQIFFIALLIVFSLSWFVFTLLYLIGDVRLRTCDFQMTFFCK 51


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.350    0.155    0.548 

Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,255,997
Number of Sequences: 14124377
Number of extensions: 48393928
Number of successful extensions: 475574
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 475558
Number of HSP's gapped (non-prelim): 19
length of query: 51
length of database: 4,842,793,630
effective HSP length: 24
effective length of query: 27
effective length of database: 4,503,808,582
effective search space: 121602831714
effective search space used: 121602831714
T: 11
A: 40
X1: 16 ( 8.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 76 (33.6 bits)