RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780878|ref|YP_003065291.1| hypothetical protein
CLIBASIA_03875 [Candidatus Liberibacter asiaticus str. psy62]
         (51 letters)



>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
          helices, ION conduction, immunoglobulin fold, cytosolic
          assembly; 3.65A {Burkholderia pseudomallei} SCOP:
          b.1.18.16 f.14.1.1
          Length = 333

 Score = 28.4 bits (63), Expect = 0.37
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 13 FFIALLIVFSLSWFVFTLLYLIGDVRLRTCDF 44
          FF +L  +F ++  +F LLY +GD  +     
Sbjct: 63 FFASLAALFVVNNTLFALLYQLGDAPIANQSP 94


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.350    0.155    0.548 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 458,888
Number of extensions: 13203
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 20
Length of query: 51
Length of database: 5,693,230
Length adjustment: 23
Effective length of query: 28
Effective length of database: 5,135,618
Effective search space: 143797304
Effective search space used: 143797304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 50 (23.5 bits)