HHsearch alignment for GI: 254780879 and conserved domain: COG0739
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=1.4e-45 Score=339.58 Aligned_cols=141 Identities=47% Similarity=0.860 Sum_probs=131.8
Q ss_pred CCCCCCCCHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEEC-CCCCEEEE
Q ss_conf 3355661000001123334--54102356764143404434642003026796727971596799965308-97007999
Q gi|254780879|r 473 YFNENGKSSRPFLLRTPVP--FGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAG-GYGKQTLI 549 (652)
Q Consensus 473 yyd~~G~S~~k~llr~Pv~--~~risS~Fg~R~hPilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~-GyGn~V~I 549 (652)
T Consensus 121 ~~~~~~~~~~~~~~~~p~~~~~~~i~s~fg~r~~p~~~~~~~h~GiD~aa~~gtpV~A~~~G~V~~~~~~~~~yGn~v~i 200 (277)
T COG0739 121 AYDVGGKLLELFGLRWPLPNGKGKISSGFGRRIHPVTGRLEPHKGIDIAAPEGTPVYAAADGVVVFAGNGGWGYGNLVII 200 (277)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf 11335442112000056667786386567765355556546778805026899867851681899970476667708999
Q ss_pred ECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEECCE---ECCCCEECCCCC
Q ss_conf 8399748820021445411889978834958998416678887426889978678---836620007887
Q gi|254780879|r 550 HHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGI---KVDSTKVRIPER 616 (652)
Q Consensus 550 ~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGsTG~STGPHLHfEv~vnG~---~VdP~~~~lp~~ 616 (652)
T Consensus 201 ~H~~g~~t~Y~Hl~~~~--V~~G~~V~~G~~Ig~~G~tG~stgphLHfev~~~g~~~~~~~p~~~-l~~~ 267 (277)
T COG0739 201 KHGDGYVTVYAHLSSIL--VKEGQKVKAGQVIGYVGSTGRSTGPHLHFEVRKNGKLVPPVNPARY-LPKG 267 (277)
T ss_pred ECCCCEEEEEECCCCCC--CCCCCEEECCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHH-CCCC
T ss_conf 74896588996065013--1589788469789972576775797588988758703675785562-2444