HHsearch alignment for GI: 254780879 and conserved domain: COG1388

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane].

Probab=94.91  E-value=0.047  Score=33.31  Aligned_cols=46  Identities=11%  Similarity=0.146  Sum_probs=38.8

Q ss_pred             EEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEE
Q ss_conf             368841797089999974999899999999854015610169988899997
Q gi|254780879|r  277 DLIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIGV  327 (652)
Q Consensus       277 ~~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~~  327 (652)
T Consensus        67 ~~~~V~~gdtL~~Ia~~~~~tv~~l~~~----n~l~~~-~i~~gq~l~~~~  112 (124)
T COG1388          67 VTYTVKKGDTLSKIARKYGVTVAELKQL----NNLSSD-KIKVGQKLKLPV  112 (124)
T ss_pred             CCEEECCCCCHHHHHHHHCCCHHHHHHH----HCCCCC-CCCCCCEEEECC
T ss_conf             6146616875788787708889998765----204576-433475166314