HHsearch alignment for GI: 254780879 and conserved domain: PRK06347
>PRK06347 autolysin; Reviewed.
Probab=97.03 E-value=0.0011 Score=44.66 Aligned_cols=121 Identities=8% Similarity=0.070 Sum_probs=66.0
Q ss_pred CEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf 01368841797089999974999899999999854015610169988899997278886405899971688348999842
Q gi|254780879|r 275 ADDLIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIALN 354 (652)
Q Consensus 275 ~e~~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~~~~~~~~~~~~r~si~~~~~~~~~va~~ 354 (652)
T Consensus 329 as~tYTV~sGDTl~~IA~KyGtSV~~L~sw----N~is~-~~IY~GQ~L~V~~~s~stnt~~s-----~~nt---~~n~n 395 (593)
T PRK06347 329 NAKIYTVVKGDSLWRIANNHKVTVANLKAW----NNLKS-DFIYPGQKLKVSAGSTTSNTNTS-----KPST---GTSTS 395 (593)
T ss_pred CCCEEEEECCCCHHHHHHCCCCCHHHHHHH----HCCCC-CCEECCCEEEECCCCCCCCCCCC-----CCCC---CCCCC
T ss_conf 564589844868888763155148777776----46567-84331767887467666666667-----7764---54445
Q ss_pred CCCCEEECCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCEEEE
Q ss_conf 788432013332100000122111233454211025666887199989999999973011101210144540688
Q gi|254780879|r 355 DNNEYVLGVEPVKMDINHQMDYMRTSEESPNIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEHLKPTDFLET 429 (652)
Q Consensus 355 d~g~fv~~~ep~~~~~~~~~~~~~~~~~~~~I~~SLy~aa~~~gip~~ii~~lv~i~a~dVDFqr~ir~GD~f~V 429 (652)
T Consensus 396 ---------------~~~tsstTsa~tYTVkSGDTLw~IA~K~g~SV~~LkswNnLs---sd~---IYpGQvLkV 449 (593)
T PRK06347 396 ---------------KPSTSTSTNAKVYTVVKGDSLWRIANNNKVTIANLKSWNNLK---SDF---IYPGQKLKV 449 (593)
T ss_pred ---------------CCCCCCCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHCCCC---CCE---EEECCEEEE
T ss_conf ---------------567765433127998228758877741595789975440666---766---863307998