HHsearch alignment for GI: 254780879 and conserved domain: cd00210
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=94.36 E-value=0.14 Score=29.99 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCC--------CEEEEEHHHHHHHHCCCCCCEEE
Q ss_conf 3404434642003026796727971596799965308970079998399--------74882002144541188997883
Q gi|254780879|r 505 PILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGN--------GYVSSYNHQDAIAKNIKAGTAVK 576 (652)
Q Consensus 505 Pilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~--------Gy~T~YaHlS~~a~gV~~G~~V~ 576 (652)
T Consensus 18 ~vFs~~~~G~G~AI~-P~~~~v~AP~~G~V~~v~~T---~HAigi~t~~G~evLiHiGiDTV~L~G~gF~~~v~~Gd~V~ 93 (124)
T cd00210 18 EVFASKMMGDGFAIK-PSDGKVVAPVDGTIVQIFPT---KHAIGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEGQRVK 93 (124)
T ss_pred HHHCCCCCCCEEEEE-CCCCEEECCCCEEEEEECCC---CCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCEEC
T ss_conf 587568822769998-47998990789799998678---96999996899899999730420148953189974889998
Q ss_pred CCCEEEEEC
Q ss_conf 495899841
Q gi|254780879|r 577 QGQIIGWIG 585 (652)
Q Consensus 577 qGQvIG~vG 585 (652)
T Consensus 94 ~G~~L~~~D 102 (124)
T cd00210 94 QGDKLLEFD 102 (124)
T ss_pred CCCEEEEEC
T ss_conf 999999985