HHsearch alignment for GI: 254780879 and conserved domain: pfam01476

>pfam01476 LysM LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
Probab=97.24  E-value=0.00041  Score=47.77  Aligned_cols=43  Identities=14%  Similarity=0.165  Sum_probs=36.3

Q ss_pred             EEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEE
Q ss_conf             884179708999997499989999999985401561016998889999
Q gi|254780879|r  279 IPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIG  326 (652)
Q Consensus       279 v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~  326 (652)
T Consensus         1 y~V~~GDtl~~IA~~~~v~~~~i~~~----N~l-~~~~i~~Gq~l~IP   43 (43)
T pfam01476         1 YTVKKGDTLSSIAKRYGITVEELAEL----NGL-SSPNLYVGQKLKIP   43 (43)
T ss_pred             CEECCCCCHHHHHHHHCCCHHHHHHH----HCC-CCCCCCCCCEEECC
T ss_conf             98798987999999989689999998----589-99856889998539