HHsearch alignment for GI: 254780879 and conserved domain: pfam01476
>pfam01476 LysM LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
Probab=97.24 E-value=0.00041 Score=47.77 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=36.3
Q ss_pred EEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEE
Q ss_conf 884179708999997499989999999985401561016998889999
Q gi|254780879|r 279 IPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIG 326 (652)
Q Consensus 279 v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~ 326 (652)
T Consensus 1 y~V~~GDtl~~IA~~~~v~~~~i~~~----N~l-~~~~i~~Gq~l~IP 43 (43)
T pfam01476 1 YTVKKGDTLSSIAKRYGITVEELAEL----NGL-SSPNLYVGQKLKIP 43 (43)
T ss_pred CEECCCCCHHHHHHHHCCCHHHHHHH----HCC-CCCCCCCCCEEECC
T ss_conf 98798987999999989689999998----589-99856889998539