HHsearch alignment of GI: 254780879 and MMDB domain: 1q90_A_169-233

>1q90_A (A:169-233) Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii}
Probab=92.91  E-value=0.13  Score=29.79  Aligned_cols=58  Identities=21%  Similarity=0.122  Sum_probs=42.7

Q ss_pred             CCEEECCCCEEEEEEEEC--CCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEE
Q ss_conf             727971596799965308--9700799983997488200214454118899788349589
Q gi|254780879|r  524 TPIVAVGDGIVEKANWAG--GYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQII  581 (652)
Q Consensus       524 TPI~Aag~G~V~~ag~~~--GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvI  581 (652)
                      |-|.|--+|+|.......  -....|.|...+|-.-.|.=--.-.--|+.|++|+.||.|
T Consensus         1 sAiiaei~G~V~~i~~~~~~k~~~~I~I~~~dge~~~y~ip~~~~l~V~eGd~V~~Gq~L   60 (65)
T 1q90_A            1 TIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPL   60 (65)
T ss_dssp             SCCBCSSSEEEEEEEECCTTTCCEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred             CEEECCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCC
T ss_conf             448367874998820211678858999988999889997489997897689998389803