HHsearch alignment of GI: 254780879 and MMDB domain: 2a6h_D_1244-1362
>2a6h_D (D:1244-1362) DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}
Probab=95.60 E-value=0.0073 Score=38.52 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=54.0
Q ss_pred CCCCCCCEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEE
Q ss_conf 43464200302679672797159679996530897007999839974882002144541188997883495899
Q gi|254780879|r 509 YSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIG 582 (652)
Q Consensus 509 ~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG 582 (652)
--|-++|.+.+.|.|..|.|--+|+|.+..... ..+.+...++-...|.-....-.-|+.|++|++||+|.
T Consensus 13 lP~V~t~~Ear~~k~~~ilA~~~G~V~~~d~~~---~~i~~~~~~~~~~~~~~~~~q~~~V~~G~~V~~Gq~lt 83 (119)
T 2a6h_D 13 LPRVIELFEARRPKAKAVISEIDGVVRIEETEE---KLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLT 83 (119)
T ss_dssp HHHHHHHHTTCCCSSBCCBCSSCEEEEECCCSS---CEEEEEECSSCEEEEEECTTCCCCCCTTSEECTTCBSS
T ss_pred CCHHHHHHHCCCCCCCCEEEEECCEEEEEECCC---EEEEEECCCCCEEEEECCCCCEEEEECCCEEECCCEEC
T ss_conf 720898874257899864886066699985377---06999836980799984899868984899995688721