HHsearch alignment of GI: 254780879 and MMDB domain: 2a6h_D_1244-1362

>2a6h_D (D:1244-1362) DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}
Probab=95.60  E-value=0.0073  Score=38.52  Aligned_cols=71  Identities=18%  Similarity=0.298  Sum_probs=54.0

Q ss_pred             CCCCCCCEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEE
Q ss_conf             43464200302679672797159679996530897007999839974882002144541188997883495899
Q gi|254780879|r  509 YSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIG  582 (652)
Q Consensus       509 ~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG  582 (652)
                      --|-++|.+.+.|.|..|.|--+|+|.+.....   ..+.+...++-...|.-....-.-|+.|++|++||+|.
T Consensus        13 lP~V~t~~Ear~~k~~~ilA~~~G~V~~~d~~~---~~i~~~~~~~~~~~~~~~~~q~~~V~~G~~V~~Gq~lt   83 (119)
T 2a6h_D           13 LPRVIELFEARRPKAKAVISEIDGVVRIEETEE---KLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLT   83 (119)
T ss_dssp             HHHHHHHHTTCCCSSBCCBCSSCEEEEECCCSS---CEEEEEECSSCEEEEEECTTCCCCCCTTSEECTTCBSS
T ss_pred             CCHHHHHHHCCCCCCCCEEEEECCEEEEEECCC---EEEEEECCCCCEEEEECCCCCEEEEECCCEEECCCEEC
T ss_conf             720898874257899864886066699985377---06999836980799984899868984899995688721