HHsearch alignment of GI: 254780879 and MMDB domain: 3iyd_C_701-796
>3iyd_C (C:701-796) DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=91.34 E-value=0.088 Score=30.93 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=41.7
Q ss_pred CCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCCCE-------E-------------EEEHHHHHHHHCCCCCCEEECC
Q ss_conf 2679672797159679996530897007999839974-------8-------------8200214454118899788349
Q gi|254780879|r 519 AAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNGY-------V-------------SSYNHQDAIAKNIKAGTAVKQG 578 (652)
Q Consensus 519 aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~Gy-------~-------------T~YaHlS~~a~gV~~G~~V~qG 578 (652)
|--.|+-|.|-.+|+|+|+.. +.|.|+-.... . -.+-|+.-+ |++|++|+.|
T Consensus 9 A~DSg~~i~a~~~G~V~yvda-----~~I~i~~~~~~~~~~~~~~~~y~L~kf~RSNQ~Tci~QrPi---V~~G~~VkkG 80 (96)
T 3iyd_C 9 AVDSGVTAVAKRGGVVQYVDA-----SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC---VSLGEPVERG 80 (96)
T ss_dssp HHHTTCSCBCSSCBCEEEECS-----SEEEECCSSSCSBTTBSCCEEEECCCSCCCTTSCCCCCEEC---CCSSSCBCTT
T ss_pred HHHCCHHHHHCCCCEEEEECC-----CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHCCCC---CCCCCEEECC
T ss_conf 310215875415987997435-----31344343123576657522762776664785316654664---2268637507
Q ss_pred CEEEEECCC
Q ss_conf 589984166
Q gi|254780879|r 579 QIIGWIGTT 587 (652)
Q Consensus 579 QvIG~vGsT 587 (652)
|+|+---+|
T Consensus 81 ~ilADG~at 89 (96)
T 3iyd_C 81 DVLADGPST 89 (96)
T ss_dssp CBSEECTTC
T ss_pred CEECCCCCC
T ss_conf 472367888