HHsearch results for GI: 254780879 and protein with PDBid: 3nyy_A
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=100.00 E-value=1.1e-41 Score=310.60 Aligned_cols=205 Identities=18% Similarity=0.278 Sum_probs=165.3
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEE-------CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999997301110121014454068875321157851246723688962-------38854201345576655444335
Q gi|254780879|r 403 LVKLIMRTLASSVNLQEHLKPTDFLETFFSVNHANNQASDDSELLYIHAR-------FGETRTRFYRFLNPVDGSVEYFN 475 (652)
Q Consensus 403 ii~~lv~i~a~dVDFqr~ir~GD~f~Vlye~~~~~g~~~~~geil~A~~~-------~~g~~~~~yrf~~~~~~~~~yyd 475 (652)
.++++.+.+.+++||+ +++.+|+|.++|+.....++.+.. .++.+.+. ...+.+....+....+....||+
T Consensus 4 ~~~~l~~~~~~~~dfr-~~~~~d~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (252)
T 3nyy_A 4 GFQRLQKPVVSQPDFR-RQPVSETMQVYLKQAADPGRDVGL-YWMATDFENRRFPGKVSPSGFQKLYRQWRNQTGWDAYV 81 (252)
T ss_dssp HHHHHTSCSTTSHHHH-HCCCCHHHHHHHTTCSSHHHHHHH-HHHHHTTTTSCCCSCSSHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHCCCCCHH-HCCCCCEEEEEEEHHHHCCCCHHH-EEEHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7888877642360223-227798776431003105882210-11002313344530204045788887664112455665
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCEEECCCCCC----CEEECCCCEEEEEEEECCCCC
Q ss_conf 566100000112333454102356------7641434044346420030267967----279715967999653089700
Q gi|254780879|r 476 ENGKSSRPFLLRTPVPFGRMTSGF------GMRYHPILGYSRMHTGVDWAAPRGT----PIVAVGDGIVEKANWAGGYGK 545 (652)
Q Consensus 476 ~~G~S~~k~llr~Pv~~~risS~F------g~R~hPilg~~r~H~GVD~aAp~GT----PI~Aag~G~V~~ag~~~GyGn 545 (652)
..+++..+.++..|+++.++++.+ +++.|+.+|..|+|.||||+||.|| ||+|++||+|+++||.++|||
T Consensus 82 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~r~~g~~r~H~GiDi~a~~Gt~~~~PV~A~~dG~V~~~g~~~~~G~ 161 (252)
T 3nyy_A 82 QSCRAIWNDVKYFPIPQSLDDTEDKISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGW 161 (252)
T ss_dssp HHHHHHHTTCCSCSSCEESSSSCCCEECCCCHHHHHTTCSCTTCCCEEEEESSCCTTCSEEECSSCEEEEEEEEETTTEE
T ss_pred HHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECEEEEEEEECCCCCE
T ss_conf 51145542101565787666778885201788877889779860789955789986665489965679998557499980
Q ss_pred EEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEEECCCCC----CCC---CEEEEEEEECC----EECCCCE
Q ss_conf 79998399748820021445411889978834958998416678----887---42688997867----8836620
Q gi|254780879|r 546 QTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGL----STG---PHLHYELIVNG----IKVDSTK 610 (652)
Q Consensus 546 ~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGsTG~----STG---PHLHfEv~vnG----~~VdP~~ 610 (652)
+|+|+|++|+.|.|+||++++ .|++|++|++||+||+||+||. +|| |||||||++++ .+|||+.
T Consensus 162 ~V~I~h~~g~~t~Y~HL~~~~-~V~~G~~V~~Gq~IG~vG~TG~~~~~stg~~~pHLHfev~~~~~~~~~~vdP~~ 236 (252)
T 3nyy_A 162 RIGITAPTGAYFYYAHLDSYA-ELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYP 236 (252)
T ss_dssp EEEEECTTSCEEEEEEESEEC-SCCTTCEECTTCEEEECBCCCSSSTTCCCSSCCEEEEEEEEEETTEEEEECCHH
T ss_pred EEEEEECCCCEEEEEECCCCC-CCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCHH
T ss_conf 999996898889851356555-568899998689999825777889887898898789999989987754708799