HHSEARCH alignment of GI: 254780879 and SCOP domain: d1qwya_

Alignment
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00  E-value=4.6e-35  Score=262.31  Aligned_cols=119  Identities=32%  Similarity=0.530  Sum_probs=106.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEE-CCCCCEEEEECCCC-EEEEEHHH
Q ss_conf             11233345410235676414340443464200302679672797159679996530-89700799983997-48820021
Q gi|254780879|r  485 LLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA-GGYGKQTLIHHGNG-YVSSYNHQ  562 (652)
Q Consensus       485 llr~Pv~~~risS~Fg~R~hPilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~-~GyGn~V~I~H~~G-y~T~YaHl  562 (652)
                      .+.||..+ ++.|+||.++-     .++|.||||++|.||||+|+.+|+|+++||. .||||+|+|+|.++ +.|.|+||
T Consensus       144 ~~~wp~~g-~~~~~fG~~r~-----g~~H~GIDi~a~~GtpV~A~~dG~V~~ag~~~~g~G~~V~I~h~~g~~~t~Y~hl  217 (270)
T d1qwya_         144 DASWLTSR-KQLQPYGQYHG-----GGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHN  217 (270)
T ss_dssp             SCHHHHTS-CEEECSEECTT-----SSEECSEEEECCTTCEEECSSSEEEEEEEEETTTTEEEEEEEETTSSEEEEEEEE
T ss_pred             CCCCCCCC-CCCCCCCCCCC-----CCCEEEEEECCCCCCEEEEEECEEEEEEEECCCCCCEEEEEEECCCCEEEEEEEC
T ss_conf             53355478-55178688897-----9964869958899996994108799998975679986999970898879999837


Q ss_pred             HHHHHCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEECC----EECCCCEE
Q ss_conf             44541188997883495899841667888742688997867----88366200
Q gi|254780879|r  563 DAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNG----IKVDSTKV  611 (652)
Q Consensus       563 S~~a~gV~~G~~V~qGQvIG~vGsTG~STGPHLHfEv~vnG----~~VdP~~~  611 (652)
                      +++.  |++||+|++||+||+||+||+||||||||||+++|    ++|||+..
T Consensus       218 ~~~~--V~~Gq~V~~Gq~IG~vGsTG~stgpHLHFEi~~~g~~~~~~VDP~~~  268 (270)
T d1qwya_         218 NRLT--VSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSY  268 (270)
T ss_dssp             SEEC--CCTTCEECTTCEEEECCCCSSCSSSEEEEEEEESEESGGGEECCHHH
T ss_pred             CEEE--CCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEECCHHH
T ss_conf             7211--38899998689999967889989977999999899179768394797


SCOP domain information

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Peptidoglycan hydrolase LytM
domain: Peptidoglycan hydrolase LytM
species: Staphylococcus aureus [TaxId: 1280]