HHSEARCH alignment of GI: 254780879 and SCOP domain: d1y7ma2

Alignment

Probab=97.08  E-value=3.6e-05  Score=51.97  Aligned_cols=44  Identities=11%  Similarity=0.104  Sum_probs=37.7

Q ss_pred             EEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEE
Q ss_conf             6884179708999997499989999999985401561016998889999
Q gi|254780879|r  278 LIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIG  326 (652)
Q Consensus       278 ~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~  326 (652)
                      .|+|++||||++|+++||++.+++.++    |+..+ ..|++||.|.|+
T Consensus         3 ~y~V~~GDTL~~IA~~y~v~~~~i~~~----N~~~~-~~l~~Gq~L~IP   46 (48)
T d1y7ma2           3 TYQVKQGDTLNSIAADFRISTAALLQA----NPSLQ-AGLTAGQSIVIP   46 (48)
T ss_dssp             EEECCTTCCHHHHHHHTTSCCCCCCCT----SCTTC-SSCCTTCEEEET
T ss_pred             EEEECCCCCHHHHHHHHCCCHHHHHHH----CCCCC-CCCCCCCEEEEC
T ss_conf             999899989999998769899999987----29999-977889999829

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]