Query gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 652 No_of_seqs 232 out of 1214 Neff 7.1 Searched_HMMs 13730 Date Wed Jun 1 10:59:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780879.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1qwya_ b.84.3.2 (A:) Peptidog 100.0 4.6E-35 3.3E-39 262.3 9.1 119 485-611 144-268 (270) 2 d1e0ga_ d.7.1.1 (A:) Membrane- 97.5 3.7E-05 2.7E-09 51.9 4.1 45 277-327 3-47 (48) 3 d1y7ma2 d.7.1.1 (A:1-48) Hypot 97.1 3.6E-05 2.7E-09 52.0 -0.1 44 278-326 3-46 (48) 4 d1gpra_ b.84.3.1 (A:) Glucose 95.0 0.022 1.6E-06 32.4 5.3 83 505-591 29-124 (158) 5 d2f3ga_ b.84.3.1 (A:) Glucose- 94.3 0.035 2.5E-06 31.0 5.1 78 505-586 21-106 (150) 6 d2gpra_ b.84.3.1 (A:) Glucose 94.0 0.045 3.3E-06 30.2 5.1 83 505-591 27-122 (154) 7 d1ci3m2 b.84.2.2 (M:170-231) C 93.5 0.034 2.5E-06 31.1 3.8 54 528-581 5-58 (62) 8 d1e2wa2 b.84.2.2 (A:169-232) C 90.6 0.14 9.9E-06 26.8 4.0 54 526-581 2-60 (64) 9 d1tu2b2 b.84.2.2 (B:170-235) C 86.8 0.29 2.1E-05 24.5 3.5 52 527-581 4-62 (66) 10 d1xjva2 b.40.4.3 (A:149-299) P 81.9 1.3 9.1E-05 20.1 7.3 77 556-635 72-148 (151) 11 d1brwa3 d.41.3.1 (A:331-433) P 75.0 0.57 4.2E-05 22.4 1.6 58 520-587 2-70 (103) 12 d1hcza2 b.84.2.2 (A:168-230) C 74.0 2.1 0.00015 18.5 5.2 54 525-581 3-60 (63) 13 d1uoua3 d.41.3.1 (A:374-480) T 73.9 0.54 4E-05 22.6 1.2 57 520-586 2-67 (105) 14 d1bdoa_ b.84.1.1 (A:) Biotinyl 66.4 1.7 0.00013 19.1 2.5 19 569-587 27-45 (80) 15 d1vf7a_ f.46.1.1 (A:) Multidru 65.9 1.5 0.00011 19.6 2.0 12 279-290 35-46 (237) 16 d2tpta3 d.41.3.1 (A:336-440) T 65.3 0.47 3.4E-05 23.0 -0.6 57 520-586 2-69 (105) 17 d1dcza_ b.84.1.1 (A:) Biotin c 64.5 2 0.00014 18.7 2.5 17 569-585 61-77 (77) 18 d1mjca_ b.40.4.5 (A:) Major co 64.0 2.4 0.00017 18.1 2.8 47 531-583 5-52 (69) 19 d1c9oa_ b.40.4.5 (A:) Major co 63.3 3.2 0.00024 17.2 3.4 47 531-583 3-49 (66) 20 d1g6pa_ b.40.4.5 (A:) Major co 62.8 2 0.00015 18.5 2.3 47 531-584 2-49 (66) 21 d1h95a_ b.40.4.5 (A:) Y-box pr 58.2 3.3 0.00024 17.1 2.7 33 531-566 10-42 (79) 22 d1wfqa_ b.40.4.5 (A:) Cold sho 55.6 4.4 0.00032 16.2 3.0 46 531-584 20-65 (89) 23 d1vf5c2 b.84.2.2 (C:170-231) C 48.5 0.72 5.2E-05 21.8 -2.0 51 527-580 4-61 (62) 24 d1gjxa_ b.84.1.1 (A:) Lipoyl d 48.2 2.5 0.00019 17.9 0.8 43 548-590 37-81 (81) 25 d1k8ma_ b.84.1.1 (A:) Lipoyl d 47.5 3.9 0.00029 16.6 1.7 19 569-587 63-81 (87) 26 d1y8ob1 b.84.1.1 (B:128-229) L 46.7 5.9 0.00043 15.3 2.5 20 569-588 64-84 (102) 27 d1pmra_ b.84.1.1 (A:) Lipoyl d 44.7 4.2 0.0003 16.4 1.5 17 569-585 61-77 (80) 28 d1ghja_ b.84.1.1 (A:) Lipoyl d 44.0 5.1 0.00037 15.8 1.8 20 569-588 60-79 (79) 29 d1qjoa_ b.84.1.1 (A:) Lipoyl d 43.6 5.8 0.00042 15.4 2.0 21 569-589 59-79 (80) 30 d1d4ca3 d.168.1.1 (A:360-505) 43.5 6.9 0.0005 14.8 2.7 32 281-312 81-112 (146) 31 d1oe1a2 b.6.1.3 (A:160-336) Ni 39.8 2.5 0.00018 17.9 -0.3 25 527-552 118-142 (177) 32 d1laba_ b.84.1.1 (A:) Lipoyl d 37.0 4.7 0.00034 16.0 0.7 21 569-589 60-80 (80) 33 d1y0pa3 d.168.1.1 (A:362-504) 36.4 8.8 0.00064 14.1 2.6 32 281-312 80-111 (143) 34 d2i8ga1 d.107.1.4 (A:2-148) Hy 32.2 3.3 0.00024 17.1 -0.7 10 516-525 82-91 (147) 35 d2dk3a1 b.34.19.1 (A:8-80) E3 31.5 9.3 0.00068 13.9 1.5 15 537-551 47-61 (73) 36 d2bw4a2 b.6.1.3 (A:166-338) Ni 29.3 8.4 0.00061 14.2 1.0 26 526-552 117-142 (173) 37 d1mzya2 b.6.1.3 (A:194-371) Ni 26.4 11 0.00078 13.5 1.1 12 541-552 135-146 (178) 38 d1l5pa_ d.15.4.1 (A:) 2Fe-2S f 26.4 13 0.00093 13.0 2.4 23 275-297 10-32 (93) 39 d1frda_ d.15.4.1 (A:) 2Fe-2S f 25.5 13 0.00096 12.9 3.2 22 276-297 15-36 (98) 40 d1iyua_ b.84.1.1 (A:) Lipoyl d 24.9 13 0.00098 12.8 4.9 39 552-590 38-78 (79) 41 d1jj7a_ c.37.1.12 (A:) Peptide 24.0 14 0.001 12.7 2.2 46 256-304 14-59 (251) 42 d1xlqa1 d.15.4.1 (A:1-106) 2Fe 22.1 15 0.0011 12.4 3.1 23 275-297 11-33 (106) 43 d1rr7a_ a.4.1.14 (A:) Middle o 22.0 15 0.0011 12.4 3.6 27 283-309 65-91 (94) 44 d1b9ra_ d.15.4.1 (A:) 2Fe-2S f 21.2 16 0.0012 12.3 1.8 23 275-297 11-33 (105) 45 d1r0wa_ c.37.1.12 (A:) Cystic 21.2 16 0.0012 12.3 2.2 15 524-538 225-239 (281) 46 d1rqpa1 b.141.1.1 (A:193-298) 21.2 16 0.0012 12.3 5.3 22 577-605 68-90 (106) 47 d2bt6a1 d.15.4.1 (A:5-108) Adr 20.8 16 0.0012 12.2 3.3 22 276-297 14-35 (104) 48 d1zud21 d.15.3.2 (2:2-66) Thia 20.5 6.5 0.00047 15.0 -0.9 47 278-327 8-60 (65) 49 d3b60a1 c.37.1.12 (A:329-581) 20.4 16 0.0012 12.2 2.2 13 526-538 220-232 (253) No 1 >d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]} Probab=100.00 E-value=4.6e-35 Score=262.31 Aligned_cols=119 Identities=32% Similarity=0.530 Sum_probs=106.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEE-CCCCCEEEEECCCC-EEEEEHHH Q ss_conf 11233345410235676414340443464200302679672797159679996530-89700799983997-48820021 Q gi|254780879|r 485 LLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA-GGYGKQTLIHHGNG-YVSSYNHQ 562 (652) Q Consensus 485 llr~Pv~~~risS~Fg~R~hPilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~-~GyGn~V~I~H~~G-y~T~YaHl 562 (652) .+.||..+ ++.|+||.++- .++|.||||++|.||||+|+.+|+|+++||. .||||+|+|+|.++ +.|.|+|| T Consensus 144 ~~~wp~~g-~~~~~fG~~r~-----g~~H~GIDi~a~~GtpV~A~~dG~V~~ag~~~~g~G~~V~I~h~~g~~~t~Y~hl 217 (270) T d1qwya_ 144 DASWLTSR-KQLQPYGQYHG-----GGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHN 217 (270) T ss_dssp SCHHHHTS-CEEECSEECTT-----SSEECSEEEECCTTCEEECSSSEEEEEEEEETTTTEEEEEEEETTSSEEEEEEEE T ss_pred CCCCCCCC-CCCCCCCCCCC-----CCCEEEEEECCCCCCEEEEEECEEEEEEEECCCCCCEEEEEEECCCCEEEEEEEC T ss_conf 53355478-55178688897-----9964869958899996994108799998975679986999970898879999837 Q ss_pred HHHHHCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEECC----EECCCCEE Q ss_conf 44541188997883495899841667888742688997867----88366200 Q gi|254780879|r 563 DAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNG----IKVDSTKV 611 (652) Q Consensus 563 S~~a~gV~~G~~V~qGQvIG~vGsTG~STGPHLHfEv~vnG----~~VdP~~~ 611 (652) +++. |++||+|++||+||+||+||+||||||||||+++| ++|||+.. T Consensus 218 ~~~~--V~~Gq~V~~Gq~IG~vGsTG~stgpHLHFEi~~~g~~~~~~VDP~~~ 268 (270) T d1qwya_ 218 NRLT--VSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSY 268 (270) T ss_dssp SEEC--CCTTCEECTTCEEEECCCCSSCSSSEEEEEEEESEESGGGEECCHHH T ss_pred CEEE--CCCCCEECCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEECCHHH T ss_conf 7211--38899998689999967889989977999999899179768394797 No 2 >d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Probab=97.53 E-value=3.7e-05 Score=51.89 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=38.1 Q ss_pred EEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEE Q ss_conf 368841797089999974999899999999854015610169988899997 Q gi|254780879|r 277 DLIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIGV 327 (652) Q Consensus 277 ~~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~~ 327 (652) ..|+|++||||++|+++||++.+++.++ |+.. +.|++||.|.|++ T Consensus 3 v~y~V~~GDTl~~IA~~y~vs~~~i~~~----N~l~--~~l~~Gq~L~i~v 47 (48) T d1e0ga_ 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRW----NSDT--ANLQPGDKLTLFV 47 (48) T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHH----CSCG--GGCCTTEEEECCC T ss_pred EEEEECCCCCHHHHHHHHCCCHHHHHHH----CCCC--CCCCCCCEEEEEE T ss_conf 7999899999999999979889999987----5996--6686799999986 No 3 >d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Probab=97.08 E-value=3.6e-05 Score=51.97 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=37.7 Q ss_pred EEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEE Q ss_conf 6884179708999997499989999999985401561016998889999 Q gi|254780879|r 278 LIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIG 326 (652) Q Consensus 278 ~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~~~~~Lr~Gq~L~I~ 326 (652) .|+|++||||++|+++||++.+++.++ |+..+ ..|++||.|.|+ T Consensus 3 ~y~V~~GDTL~~IA~~y~v~~~~i~~~----N~~~~-~~l~~Gq~L~IP 46 (48) T d1y7ma2 3 TYQVKQGDTLNSIAADFRISTAALLQA----NPSLQ-AGLTAGQSIVIP 46 (48) T ss_dssp EEECCTTCCHHHHHHHTTSCCCCCCCT----SCTTC-SSCCTTCEEEET T ss_pred EEEECCCCCHHHHHHHHCCCHHHHHHH----CCCCC-CCCCCCCEEEEC T ss_conf 999899989999998769899999987----29999-977889999829 No 4 >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} Probab=94.95 E-value=0.022 Score=32.44 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=58.4 Q ss_pred CCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCCC--------EEEEEHHHHHHHHCCCCCCEEE Q ss_conf 34044346420030267967279715967999653089700799983997--------4882002144541188997883 Q gi|254780879|r 505 PILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNG--------YVSSYNHQDAIAKNIKAGTAVK 576 (652) Q Consensus 505 Pilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~G--------y~T~YaHlS~~a~gV~~G~~V~ 576 (652) |++-..-|=.|+-+- |.+--|+|..+|+|...-- -+..+-|+..|| ..|.-.+-..|..-|+.||+|+ T Consensus 29 ~vFs~~~~G~G~aI~-P~~~~v~AP~~G~I~~i~~---T~HAigi~t~~G~evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk 104 (158) T d1gpra_ 29 QVFSGKMMGDGFAIL-PSEGIVVSPVRGKILNVFP---TKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVE 104 (158) T ss_dssp HHHHTTSSCEEEEEE-ESSCEEECSSSEEEEEECT---TSSEEEEEETTSCEEEEECSBSCGGGTTTTEEECCCTTCEEC T ss_pred HHHCCCCCCCEEEEE-ECCCEEEEEECEEEEEECC---CCCEEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCEEC T ss_conf 475557833649999-7399899820859999837---997999994897299999800520148960699986899996 Q ss_pred CCCEEEEECC-----CCCCC Q ss_conf 4958998416-----67888 Q gi|254780879|r 577 QGQIIGWIGT-----TGLST 591 (652) Q Consensus 577 qGQvIG~vGs-----TG~ST 591 (652) +||.|..+=. -|+++ T Consensus 105 ~G~~L~~~D~~~i~~~g~~~ 124 (158) T d1gpra_ 105 PGQKLLEVDLDAVKPNVPSL 124 (158) T ss_dssp TTCEEEEECHHHHGGGSSBC T ss_pred CCCEEEEECHHHHHHHCCCC T ss_conf 89897775899999609997 No 5 >d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} Probab=94.34 E-value=0.035 Score=30.99 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=54.5 Q ss_pred CCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCCC--------EEEEEHHHHHHHHCCCCCCEEE Q ss_conf 34044346420030267967279715967999653089700799983997--------4882002144541188997883 Q gi|254780879|r 505 PILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNG--------YVSSYNHQDAIAKNIKAGTAVK 576 (652) Q Consensus 505 Pilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~G--------y~T~YaHlS~~a~gV~~G~~V~ 576 (652) |++-..-|=.|+-+- |.+--|+|.-||+|...-.. +..+-|+..|| ..|...+-..|-.-|++||+|+ T Consensus 21 ~vFs~~~mG~GvAI~-P~~~~v~AP~dG~V~~v~~T---~HAigi~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~ 96 (150) T d2f3ga_ 21 VVFAEKIVGDGIAIK-PTGNKMVAPVDGTIGKIFET---NHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVK 96 (150) T ss_dssp HHHHTTSSCEEEEEE-ECSSEEECSSSEEEEEECTT---SSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEEC T ss_pred HHHHCCCCCCEEEEE-ECCCEEEEECCEEEEEECCC---CCEEEEEECCCEEEEEEECCCHHHCCCCCEEEEECCCCEEC T ss_conf 588068843759999-57992995108799998778---98999992893399999764554248841489956899988 Q ss_pred CCCEEEEECC Q ss_conf 4958998416 Q gi|254780879|r 577 QGQIIGWIGT 586 (652) Q Consensus 577 qGQvIG~vGs 586 (652) +||.+..+=. T Consensus 97 ~G~~L~~~D~ 106 (150) T d2f3ga_ 97 VGDTVIEFDL 106 (150) T ss_dssp TTCEEEEECH T ss_pred CCCEEEEECH T ss_conf 9999999859 No 6 >d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} Probab=94.00 E-value=0.045 Score=30.21 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=57.0 Q ss_pred CCCCCCCCCCCEEECCCCCCCEEECCCCEEEEEEEECCCCCEEEEECCCC--------EEEEEHHHHHHHHCCCCCCEEE Q ss_conf 34044346420030267967279715967999653089700799983997--------4882002144541188997883 Q gi|254780879|r 505 PILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNG--------YVSSYNHQDAIAKNIKAGTAVK 576 (652) Q Consensus 505 Pilg~~r~H~GVD~aAp~GTPI~Aag~G~V~~ag~~~GyGn~V~I~H~~G--------y~T~YaHlS~~a~gV~~G~~V~ 576 (652) |++-..-|=.|+-+- |.+--|+|.-||+|...-. -+..+-|+..+| ..|.-.+-..|-.-|++||+|+ T Consensus 27 ~vFs~k~~G~G~aI~-P~~~~v~AP~dG~I~~i~~---T~HAigi~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~ 102 (154) T d2gpra_ 27 EVFKERMLGDGFAIN-PKSNDFHAPVSGKLVTAFP---TKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVN 102 (154) T ss_dssp HHHHTTSSCEEEEEE-ESSSEEECSSCEEEEECCT---TCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEEC T ss_pred HHHCCCCCCCEEEEE-ECCCEEEEECCEEEEEECC---CCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCEEC T ss_conf 565568973769999-6599799853809999877---896999991899899999763610158832689954899990 Q ss_pred CCCEEEEEC-----CCCCCC Q ss_conf 495899841-----667888 Q gi|254780879|r 577 QGQIIGWIG-----TTGLST 591 (652) Q Consensus 577 qGQvIG~vG-----sTG~ST 591 (652) +||.+..+= .-|+++ T Consensus 103 ~G~~L~~~D~~~i~~~g~~~ 122 (154) T d2gpra_ 103 AGDKLVTVDLKSVAKKVPSI 122 (154) T ss_dssp TTCEEEEECHHHHHHHSSCC T ss_pred CCCEEEEECHHHHHHCCCCC T ss_conf 89999998599998639998 No 7 >d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]} Probab=93.53 E-value=0.034 Score=31.06 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=41.5 Q ss_pred ECCCCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEE Q ss_conf 715967999653089700799983997488200214454118899788349589 Q gi|254780879|r 528 AVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQII 581 (652) Q Consensus 528 Aag~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvI 581 (652) |..+|+|...+....-++.|.|...+|-...|.=-....--|+.|+.|+.||.+ T Consensus 5 A~~~G~V~~i~~~~~g~~~I~I~~~~G~~~~y~Ip~g~~l~V~eGd~V~aG~~L 58 (62) T d1ci3m2 5 ASAAGVITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGAAL 58 (62) T ss_dssp CSSCEEEEEEEECTTSCEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBS T ss_pred CCCCEEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCCC T ss_conf 710879989586269988999999999899998689998788799999589714 No 8 >d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=90.55 E-value=0.14 Score=26.82 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=39.2 Q ss_pred EE-ECCCCEEEEEEE--ECCCCCEEEEECCCCEEEEEH--HHHHHHHCCCCCCEEECCCEE Q ss_conf 79-715967999653--089700799983997488200--214454118899788349589 Q gi|254780879|r 526 IV-AVGDGIVEKANW--AGGYGKQTLIHHGNGYVSSYN--HQDAIAKNIKAGTAVKQGQII 581 (652) Q Consensus 526 I~-Aag~G~V~~ag~--~~GyGn~V~I~H~~Gy~T~Ya--HlS~~a~gV~~G~~V~qGQvI 581 (652) || |..+|+|..... ...-++.|.|...+|-.-.|. +-+++. |+.|+.|+.||.| T Consensus 2 ~~na~~aG~Vs~I~~~~~~kg~~~I~I~~~dGe~~~y~Ip~g~~l~--V~eGd~V~~G~~L 60 (64) T d1e2wa2 2 IYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLI--VKEGQTVQADQPL 60 (64) T ss_dssp CCBCSSCEEEEEEEESSSSSCCEEEEEECTTSCEEEEEECSSSCBC--CCTTCEECTTCBC T ss_pred EECCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEE--ECCCCEEECCCCC T ss_conf 6647379799877861036895899999999999999747998688--8899999589735 No 9 >d1tu2b2 b.84.2.2 (B:170-235) Cytochrome f, small domain {Anabaena sp., strain PCC 7120 [TaxId: 1167]} Probab=86.78 E-value=0.29 Score=24.54 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=38.5 Q ss_pred EECCCCEEEEEEEE----CCCCCEEEEECCCCE---EEEEHHHHHHHHCCCCCCEEECCCEE Q ss_conf 97159679996530----897007999839974---88200214454118899788349589 Q gi|254780879|r 527 VAVGDGIVEKANWA----GGYGKQTLIHHGNGY---VSSYNHQDAIAKNIKAGTAVKQGQII 581 (652) Q Consensus 527 ~Aag~G~V~~ag~~----~GyGn~V~I~H~~Gy---~T~YaHlS~~a~gV~~G~~V~qGQvI 581 (652) -|...|+|...-.. |+|+..|.|.-.+|- ++.=+-..-+ |++||.|+.||-+ T Consensus 4 ~AsaaG~Is~I~~~~~~~G~~~~~v~I~t~~G~~v~e~IP~GpeLi---VseG~~VkadqpL 62 (66) T d1tu2b2 4 SAAATGTISKIAKQEGEDGSVKYLVDIKTESGEVVSDTIPAGPELI---VSEGQAVTAGDAL 62 (66) T ss_dssp BCSCCEEEEEEEEEECSSSEEEEEEEEETTTTEEECCEECSSCCBS---CCTTCEECTTCBS T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCEEE---ECCCCEEECCCCC T ss_conf 2757879999861026688527999986599989877518998689---8289889669866 No 10 >d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Probab=81.89 E-value=1.3 Score=20.05 Aligned_cols=77 Identities=12% Similarity=0.202 Sum_probs=55.0 Q ss_pred EEEEHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEECCEECCCCEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 88200214454118899788349589984166788874268899786788366200078878788899999999999999 Q gi|254780879|r 556 VSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVDSTKVRIPERENLKGDLLQRFAMEKKRIN 635 (652) Q Consensus 556 ~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGsTG~STGPHLHfEv~vnG~~VdP~~~~lp~~~~l~~~~l~~F~~~~~~id 635 (652) +|.|-.-+.+++.+|+|+.|+---|=.+..+.+...-.-||-|+...|-...++.|++-... ......+++-.+-++ T Consensus 72 V~lyD~H~~~ar~lK~GdfV~l~NVh~k~~~~~~~~~~~l~le~hlhgg~~y~rgI~vlp~~---~~~~~~lk~~~es~~ 148 (151) T d1xjva2 72 ILVYDNHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPES---NSDVDQLKKDLESAN 148 (151) T ss_dssp EEEETTHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTT---SHHHHHHHHHHHHHH T ss_pred EEEECCHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEECCCC---CHHHHHHHHHHHHCC T ss_conf 99987618889637889889999888971267876677505999974882539821987888---857999987766344 No 11 >d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Probab=75.03 E-value=0.57 Score=22.45 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=41.7 Q ss_pred CCCCCCEEECCCCEEEEEE--------EECCCCCEE---EEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEEECCC Q ss_conf 6796727971596799965--------308970079---9983997488200214454118899788349589984166 Q gi|254780879|r 520 APRGTPIVAVGDGIVEKAN--------WAGGYGKQT---LIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTT 587 (652) Q Consensus 520 Ap~GTPI~Aag~G~V~~ag--------~~~GyGn~V---~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGsT 587 (652) |+.=++|.|..+|.|.... +.=|-|+.. .|+|+-|+.- -.+.|++|++||.|..+=+. T Consensus 2 A~~~~~v~A~~~G~v~~id~~~iG~~~~~LGaGR~~~~D~ID~~vGi~l----------~~k~Gd~V~~Gd~l~~i~~~ 70 (103) T d1brwa3 2 AAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVL----------HKKIGDRVQKGEALATIHSN 70 (103) T ss_dssp CSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEE----------SCCTTCEECTTCEEEEEEES T ss_pred CCEEEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE----------ECCCCCEECCCCEEEEEECC T ss_conf 9758999779998999970899999999848982556676586655599----------62689997699949999858 No 12 >d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip (Brassica rapa) [TaxId: 3711]} Probab=73.96 E-value=2.1 Score=18.49 Aligned_cols=54 Identities=19% Similarity=0.141 Sum_probs=38.5 Q ss_pred CEEECCCCEEEEEEEECCCCCEEEEEC-CCCE---EEEEHHHHHHHHCCCCCCEEECCCEE Q ss_conf 279715967999653089700799983-9974---88200214454118899788349589 Q gi|254780879|r 525 PIVAVGDGIVEKANWAGGYGKQTLIHH-GNGY---VSSYNHQDAIAKNIKAGTAVKQGQII 581 (652) Q Consensus 525 PI~Aag~G~V~~ag~~~GyGn~V~I~H-~~Gy---~T~YaHlS~~a~gV~~G~~V~qGQvI 581 (652) ..-|...|+|.+.....--|+.|.|.- .+|- .+.=+-..-+ |++||.|+.||-+ T Consensus 3 vy~AsaaG~I~~I~~~ekGgy~vtI~~~~dg~~v~~~IP~GpeLi---VseG~~V~adqpL 60 (63) T d1hcza2 3 VYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELL---VSEGESIKLDQPL 60 (63) T ss_dssp CCBCSSCEEEEEEEECTTSCEEEEEEETTTTEEEEEEECTTCCBC---CCTTCEECTTCBS T ss_pred EECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEE---ECCCCEEECCCCC T ss_conf 382757879989787688878999986589978888619998589---8089999779756 No 13 >d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Probab=73.91 E-value=0.54 Score=22.60 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=37.5 Q ss_pred CCCCCCEEECCCCEEEEEE-----E---ECCCCC-EEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEEECC Q ss_conf 6796727971596799965-----3---089700-79998399748820021445411889978834958998416 Q gi|254780879|r 520 APRGTPIVAVGDGIVEKAN-----W---AGGYGK-QTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGT 586 (652) Q Consensus 520 Ap~GTPI~Aag~G~V~~ag-----~---~~GyGn-~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGs 586 (652) |+.=++|+|..+|.|.... + .=|-|+ -=.|+|+-|+.- -++.|++|++||.|..+=+ T Consensus 2 A~~~~~i~A~~~G~V~~id~~~lG~~~~~LGaGR~~d~ID~~vGi~l----------~~k~Gd~V~~G~~l~~ih~ 67 (105) T d1uoua3 2 AREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAEL----------LVDVGQRLRRGTPWLRVHR 67 (105) T ss_dssp CSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEE----------CSCTTCEECTTCEEEEEEE T ss_pred CCEEEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCEEE----------EECCCCEECCCCEEEEEEC T ss_conf 97169996699979999717999999999678987776375555799----------6058899869993999988 No 14 >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Probab=66.38 E-value=1.7 Score=19.08 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=12.7 Q ss_pred CCCCCEEECCCEEEEECCC Q ss_conf 8899788349589984166 Q gi|254780879|r 569 IKAGTAVKQGQIIGWIGTT 587 (652) Q Consensus 569 V~~G~~V~qGQvIG~vGsT 587 (652) |+.|++|+.||+++.+=+- T Consensus 27 V~~Gd~V~~Gq~l~~iEam 45 (80) T d1bdoa_ 27 IEVGQKVNVGDTLCIVEAM 45 (80) T ss_dssp CCTTCEECTTCEEEEEEET T ss_pred CCCCCEEECCCEEEEEECC T ss_conf 1279859089999999917 No 15 >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} Probab=65.86 E-value=1.5 Score=19.58 Aligned_cols=12 Identities=0% Similarity=0.271 Sum_probs=7.3 Q ss_pred EEECCCCCHHHH Q ss_conf 884179708999 Q gi|254780879|r 279 IPIQHNTTIFDA 290 (652) Q Consensus 279 v~VK~GDTL~~I 290 (652) -.||+||.|..| T Consensus 35 ~~VkkGq~L~~l 46 (237) T d1vf7a_ 35 SDVKAGQQLYQI 46 (237) T ss_dssp EEECTTSEEEEE T ss_pred CEECCCCEEEEE T ss_conf 998899999998 No 16 >d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Probab=65.31 E-value=0.47 Score=23.05 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=40.4 Q ss_pred CCCCCCEEECCCCEEEEE-----EE---ECCCCCEE---EEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEEECC Q ss_conf 679672797159679996-----53---08970079---998399748820021445411889978834958998416 Q gi|254780879|r 520 APRGTPIVAVGDGIVEKA-----NW---AGGYGKQT---LIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGT 586 (652) Q Consensus 520 Ap~GTPI~Aag~G~V~~a-----g~---~~GyGn~V---~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~vGs 586 (652) |+.=.||+|--+|.|... || .=|-|+.. .|+|+-|+.- -++.|++|++||.|..+=+ T Consensus 2 A~~~~~I~A~~~G~v~~ida~~iG~a~~~LGaGR~~~~D~ID~~vGi~l----------~~k~Gd~V~~Gd~l~~i~~ 69 (105) T d2tpta3 2 AMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTD----------MARLGDQVDGQRPLAVIHA 69 (105) T ss_dssp CSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEES----------CCCTTCEEBTTBCSEEEEE T ss_pred CCEEEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE----------EECCCCEECCCCEEEEEEC T ss_conf 8515888469998999972799999999808985767787787442899----------8358899769995999977 No 17 >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Probab=64.53 E-value=2 Score=18.67 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=9.3 Q ss_pred CCCCCEEECCCEEEEEC Q ss_conf 88997883495899841 Q gi|254780879|r 569 IKAGTAVKQGQIIGWIG 585 (652) Q Consensus 569 V~~G~~V~qGQvIG~vG 585 (652) ++.|+.|..||+|..+| T Consensus 61 v~~G~~V~~G~~L~~ig 77 (77) T d1dcza_ 61 VKERDAVQGGQGLIKIG 77 (77) T ss_dssp CCTTCBCCBTSEEEEEC T ss_pred ECCCCEECCCCEEEEEC T ss_conf 37999989999999939 No 18 >d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]} Probab=64.03 E-value=2.4 Score=18.10 Aligned_cols=47 Identities=28% Similarity=0.457 Sum_probs=29.4 Q ss_pred CCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCCC-CEEECCCEEEE Q ss_conf 967999653089700799983997488200214454118899-78834958998 Q gi|254780879|r 531 DGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAG-TAVKQGQIIGW 583 (652) Q Consensus 531 ~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G-~~V~qGQvIG~ 583 (652) .|+|..-....|||-. ...+|=.-.|-|.|.+.. .| +.++.||.+-| T Consensus 5 ~G~Vk~f~~~kGfGFI---~~d~g~~diFvH~s~l~~---~~~~~L~~G~~V~f 52 (69) T d1mjca_ 5 TGIVKWFNADKGFGFI---TPDDGSKDVFVHFSAIQN---DGYKSLDEGQKVSF 52 (69) T ss_dssp EEEEEEEETTTTEEEE---EETTSCCCEEEEGGGBCC---TTTCCCCTTCEEEE T ss_pred EEEEEEEECCCCEEEE---EECCCCCCEEEEHHHHCC---CCCCCCCCCCEEEE T ss_conf 8999999399997999---976898329999589052---27986899999999 No 19 >d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]} Probab=63.30 E-value=3.2 Score=17.15 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=29.2 Q ss_pred CCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEE Q ss_conf 96799965308970079998399748820021445411889978834958998 Q gi|254780879|r 531 DGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGW 583 (652) Q Consensus 531 ~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~ 583 (652) .|+|..-.-..|||-. .. .+| .-.|-|.|.+.. ..-..+++||.|=+ T Consensus 3 ~G~Vk~fn~~kGfGFI-~~--d~g-~DiF~H~s~l~~--~~~~~L~~G~~V~f 49 (66) T d1c9oa_ 3 RGKVKWFNNEKGYGFI-EV--EGG-SDVFVHFTAIQG--EGFKTLEEGQEVSF 49 (66) T ss_dssp EEEEEEEETTTTEEEE-EE--TTE-EEEEEEGGGBCS--SSCCCCCTTCEEEE T ss_pred CEEEEEEECCCCEEEE-EE--CCC-CEEEEEEHHCCC--CCCCCCCCCCEEEE T ss_conf 8199999799998999-86--699-339999046261--36876899999999 No 20 >d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]} Probab=62.79 E-value=2 Score=18.55 Aligned_cols=47 Identities=30% Similarity=0.441 Sum_probs=29.3 Q ss_pred CCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCCC-CEEECCCEEEEE Q ss_conf 967999653089700799983997488200214454118899-788349589984 Q gi|254780879|r 531 DGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAG-TAVKQGQIIGWI 584 (652) Q Consensus 531 ~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G-~~V~qGQvIG~v 584 (652) .|+|..-....|||-.+. + +| .-.|-|.|.+. ..| ..++.||.|-+. T Consensus 2 ~G~Vk~f~~~kGfGFI~~-~--~g-~diFvH~s~l~---~~g~~~l~~G~~V~f~ 49 (66) T d1g6pa_ 2 RGKVKWFDSKKGYGFITK-D--EG-GDVFVHWSAIE---MEGFKTLKEGQVVEFE 49 (66) T ss_dssp CEEEEEEETTTTEEEEEE-T--TS-CBCBBCSSSSC---CSSCCCCCSSSEEEEE T ss_pred EEEEEEEECCCCEEEEEE-C--CC-CEEEEEHHHHC---CCCCCCCCCCCEEEEE T ss_conf 189999969998618976-6--99-61999937813---2479868999999999 No 21 >d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD) {Human (Homo sapiens) [TaxId: 9606]} Probab=58.17 E-value=3.3 Score=17.13 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=22.5 Q ss_pred CCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHH Q ss_conf 967999653089700799983997488200214454 Q gi|254780879|r 531 DGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIA 566 (652) Q Consensus 531 ~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a 566 (652) -|+|..=.-..|||-.. -.+|-.-.|-|.|.|. T Consensus 10 ~G~VKwfn~~KGfGFI~---~ddg~~DvFvH~s~i~ 42 (79) T d1h95a_ 10 LGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIK 42 (79) T ss_dssp EEEEEEEETTTTEEEEE---EGGGTEEEEEEGGGBC T ss_pred CEEEEEECCCCCEEEEE---ECCCCCCEEEEHHHCC T ss_conf 57999981999969998---7899864899916710 No 22 >d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]} Probab=55.55 E-value=4.4 Score=16.18 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=29.8 Q ss_pred CCEEEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEEE Q ss_conf 967999653089700799983997488200214454118899788349589984 Q gi|254780879|r 531 DGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWI 584 (652) Q Consensus 531 ~G~V~~ag~~~GyGn~V~I~H~~Gy~T~YaHlS~~a~gV~~G~~V~qGQvIG~v 584 (652) -|+|.. |..|||- |+..++..-.|-|.|.+..+ -.+.+.||.|-|. T Consensus 20 ~G~I~~--~~~gfGF---I~~~~~~~dvF~H~s~~~~~---~~~l~~G~~VeF~ 65 (89) T d1wfqa_ 20 TGVIEK--LLTSYGF---IQCSERQARLFFHCSQYNGN---LQDLKVGDDVEFE 65 (89) T ss_dssp EEEEEE--ECSSEEE---EEETTTTEEEEEETTTCSSC---TTTCCTTCCEEEE T ss_pred EEEEEE--ECCCCCE---EEECCCCCEEEEEEEHHHCC---CCCCCCCCEEEEE T ss_conf 799989--5574104---87189984599995220046---7854678799999 No 23 >d1vf5c2 b.84.2.2 (C:170-231) Cytochrome f, small domain {Mastigocladus laminosus [TaxId: 83541]} Probab=48.49 E-value=0.72 Score=21.76 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=33.6 Q ss_pred EECCCCEEEEEEEE-CC---CCCEEEEECCCCE---EEEEHHHHHHHHCCCCCCEEECCCE Q ss_conf 97159679996530-89---7007999839974---8820021445411889978834958 Q gi|254780879|r 527 VAVGDGIVEKANWA-GG---YGKQTLIHHGNGY---VSSYNHQDAIAKNIKAGTAVKQGQI 580 (652) Q Consensus 527 ~Aag~G~V~~ag~~-~G---yGn~V~I~H~~Gy---~T~YaHlS~~a~gV~~G~~V~qGQv 580 (652) -|...|+|...... .| +|+.|.|.-.+|- .+.=+-..-+ |++||.|+.||- T Consensus 4 ~AsaaG~Is~I~~~ekg~~~~gy~vtI~t~dG~~v~~~IP~GpeLi---VseG~~Vkadqp 61 (62) T d1vf5c2 4 TASATGTITKIAKEEDEYGNVKYQVSIQTDSGKTVVDTIPAGPELI---VSEGQAVKAGEA 61 (62) T ss_dssp CCSSSSCCCBCCCCCCCSSCCCCCCBCCCCSSSCCCCCCCSSSCCC---CCTTCCCTTSCC T ss_pred CCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE---ECCCCEEECCCC T ss_conf 2656748889876457876542699998799999887408998589---738988857987 No 24 >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Probab=48.18 E-value=2.5 Score=17.89 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=25.7 Q ss_pred EEECCCCEEEEEHHHHHHHH--CCCCCCEEECCCEEEEECCCCCC Q ss_conf 99839974882002144541--18899788349589984166788 Q gi|254780879|r 548 LIHHGNGYVSSYNHQDAIAK--NIKAGTAVKQGQIIGWIGTTGLS 590 (652) Q Consensus 548 ~I~H~~Gy~T~YaHlS~~a~--gV~~G~~V~qGQvIG~vGsTG~S 590 (652) .|.-.......++..+...+ .+++|+.|+.||+|+.+-..|-| T Consensus 37 ~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g~a 81 (81) T d1gjxa_ 37 TLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTA 81 (81) T ss_dssp EEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSCCC T ss_pred EEECCCCEEEEEEEEEEEEEEEEECCCCEECCCCEEEEEECCCCC T ss_conf 999477487987432589999980898998899999999446579 No 25 >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Probab=47.49 E-value=3.9 Score=16.57 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=12.9 Q ss_pred CCCCCEEECCCEEEEECCC Q ss_conf 8899788349589984166 Q gi|254780879|r 569 IKAGTAVKQGQIIGWIGTT 587 (652) Q Consensus 569 V~~G~~V~qGQvIG~vGsT 587 (652) +++|+.|+.||.|+.+... T Consensus 63 v~~G~~v~~G~~l~~i~~~ 81 (87) T d1k8ma_ 63 YNLDDIAYVGKPLVDIETE 81 (87) T ss_dssp CCSSCEECTTSEEEEEECS T ss_pred ECCCCEECCCCEEEEEECC T ss_conf 5899997899999999767 No 26 >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Probab=46.68 E-value=5.9 Score=15.30 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=12.2 Q ss_pred CCCCC-EEECCCEEEEECCCC Q ss_conf 88997-883495899841667 Q gi|254780879|r 569 IKAGT-AVKQGQIIGWIGTTG 588 (652) Q Consensus 569 V~~G~-~V~qGQvIG~vGsTG 588 (652) +..|+ .|+-|++|+++...+ T Consensus 64 v~eGd~~v~vG~~ia~i~~~~ 84 (102) T d1y8ob1 64 VPEGTRDVPLGTPLCIIVEKE 84 (102) T ss_dssp SCTTCCSEETTCEEEEEESSG T ss_pred ECCCCEEECCCCEEEEEECCC T ss_conf 746997974999899995577 No 27 >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Probab=44.65 E-value=4.2 Score=16.37 Aligned_cols=17 Identities=35% Similarity=0.521 Sum_probs=13.6 Q ss_pred CCCCCEEECCCEEEEEC Q ss_conf 88997883495899841 Q gi|254780879|r 569 IKAGTAVKQGQIIGWIG 585 (652) Q Consensus 569 V~~G~~V~qGQvIG~vG 585 (652) +++|+.|+-||+|+++. T Consensus 61 v~~Gd~v~~G~~l~~i~ 77 (80) T d1pmra_ 61 EDEGTTVTSRQILGRLR 77 (80) T ss_dssp TCTTCEECSSSEEEBCC T ss_pred ECCCCEECCCCEEEEEE T ss_conf 68999987999999996 No 28 >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Probab=43.98 E-value=5.1 Score=15.78 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=16.3 Q ss_pred CCCCCEEECCCEEEEECCCC Q ss_conf 88997883495899841667 Q gi|254780879|r 569 IKAGTAVKQGQIIGWIGTTG 588 (652) Q Consensus 569 V~~G~~V~qGQvIG~vGsTG 588 (652) +++|+.|+-||+|+++..-| T Consensus 60 v~~Gd~v~~G~~l~~i~~~G 79 (79) T d1ghja_ 60 KNEGDTVLSGELLGKLTEGG 79 (79) T ss_dssp SCTTCEECTTCEEEEECCCC T ss_pred CCCCCEECCCCEEEEEECCC T ss_conf 19999988999999994799 No 29 >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Probab=43.58 E-value=5.8 Score=15.39 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=15.2 Q ss_pred CCCCCEEECCCEEEEECCCCC Q ss_conf 889978834958998416678 Q gi|254780879|r 569 IKAGTAVKQGQIIGWIGTTGL 589 (652) Q Consensus 569 V~~G~~V~qGQvIG~vGsTG~ 589 (652) ++.|+.|+.||+|+.+-..|- T Consensus 59 v~~G~~V~~G~~l~~ie~eg~ 79 (80) T d1qjoa_ 59 VNVGDKVKTGSLIMIFEVEGA 79 (80) T ss_dssp CCTTCEECTTCCCEEEESCCC T ss_pred ECCCCEECCCCEEEEEECCCC T ss_conf 289999889999999965758 No 30 >d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Probab=43.51 E-value=6.9 Score=14.84 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=24.7 Q ss_pred ECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 41797089999974999899999999854015 Q gi|254780879|r 281 IQHNTTIFDAMVHAGYSNGDSAKIAKALKNEV 312 (652) Q Consensus 281 VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~ 312 (652) ++++|||..++...|++.+.+.+-++..|... T Consensus 81 ~~ka~TleeLA~~~gid~~~L~~Tv~~yN~~~ 112 (146) T d1d4ca3 81 VKEGKTIEELAKQIDVPAAELAKTVTAYNGFV 112 (146) T ss_dssp CEEESSHHHHHHHHTCCHHHHHHHHHHHHHHH T ss_pred EEECCCHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 55748899999986989789999999999998 No 31 >d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Probab=39.83 E-value=2.5 Score=17.94 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=11.5 Q ss_pred EECCCCEEEEEEEECCCCCEEEEECC Q ss_conf 97159679996530897007999839 Q gi|254780879|r 527 VAVGDGIVEKANWAGGYGKQTLIHHG 552 (652) Q Consensus 527 ~Aag~G~V~~ag~~~GyGn~V~I~H~ 552 (652) +.+|.+.++..-. .--|.|..+.|+ T Consensus 118 V~pG~~~~v~~tf-~~PG~Y~fV~H~ 142 (177) T d1oe1a2 118 IRGGSAGAALYTF-KQPGVYAYLNHN 142 (177) T ss_dssp BCTTEEEEEEEEC-CSCEEEEEEESS T ss_pred ECCCCCEEEEEEE-CCCEEEEEEECH T ss_conf 6388508999994-576589999347 No 32 >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Probab=37.02 E-value=4.7 Score=16.00 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.7 Q ss_pred CCCCCEEECCCEEEEECCCCC Q ss_conf 889978834958998416678 Q gi|254780879|r 569 IKAGTAVKQGQIIGWIGTTGL 589 (652) Q Consensus 569 V~~G~~V~qGQvIG~vGsTG~ 589 (652) +++|+.|+.||+|+++..-|+ T Consensus 60 v~~Gd~v~~G~~l~~ie~~G~ 80 (80) T d1laba_ 60 VPEGTVATVGQTLITLDAPGY 80 (80) T ss_dssp SCSSSEECSSSCSBCBBCSCC T ss_pred ECCCCEECCCCEEEEEECCCC T ss_conf 589899789999999946869 No 33 >d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Probab=36.45 E-value=8.8 Score=14.10 Aligned_cols=32 Identities=6% Similarity=0.018 Sum_probs=22.2 Q ss_pred ECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 41797089999974999899999999854015 Q gi|254780879|r 281 IQHNTTIFDAMVHAGYSNGDSAKIAKALKNEV 312 (652) Q Consensus 281 VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~~~ 312 (652) ++++|||..+++..|++++...+-++..|... T Consensus 80 ~~~adtleeLA~~~gid~~~L~~Tv~~yN~~~ 111 (143) T d1y0pa3 80 APTADSLVKLGKMEGIDGKALTETVARYNSLV 111 (143) T ss_dssp CCEESSHHHHHHHHTSCHHHHHHHHHHHHHHH T ss_pred EEECCCHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 22358399999985989789899999999998 No 34 >d2i8ga1 d.107.1.4 (A:2-148) Hypothetical protein DIP2269 {Corynebacterium diphtheriae [TaxId: 1717]} Probab=32.19 E-value=3.3 Score=17.06 Aligned_cols=10 Identities=70% Similarity=1.165 Sum_probs=3.5 Q ss_pred EEECCCCCCC Q ss_conf 0302679672 Q gi|254780879|r 516 VDWAAPRGTP 525 (652) Q Consensus 516 VD~aAp~GTP 525 (652) |||+||+-+- T Consensus 82 VD~aAPI~~t 91 (147) T d2i8ga1 82 VDWAAPIDTT 91 (147) T ss_dssp HHHHSCTTTS T ss_pred HHCCCCCCCC T ss_conf 5114853457 No 35 >d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]} Probab=31.51 E-value=9.3 Score=13.92 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=5.3 Q ss_pred EEEECCCCCEEEEEC Q ss_conf 653089700799983 Q gi|254780879|r 537 ANWAGGYGKQTLIHH 551 (652) Q Consensus 537 ag~~~GyGn~V~I~H 551 (652) .-|..|.-|.=++-| T Consensus 47 V~Wd~G~~n~YR~G~ 61 (73) T d2dk3a1 47 VTWDAGGSNSYRMGA 61 (73) T ss_dssp EEETTTEEEEEEBST T ss_pred EEECCCCCCCCCCCC T ss_conf 995899942422238 No 36 >d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Probab=29.28 E-value=8.4 Score=14.23 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=12.8 Q ss_pred EEECCCCEEEEEEEECCCCCEEEEECC Q ss_conf 797159679996530897007999839 Q gi|254780879|r 526 IVAVGDGIVEKANWAGGYGKQTLIHHG 552 (652) Q Consensus 526 I~Aag~G~V~~ag~~~GyGn~V~I~H~ 552 (652) .+.+|.++++..-.. --|.|....|+ T Consensus 117 ~VppG~a~~ve~~f~-~PG~y~~v~H~ 142 (173) T d2bw4a2 117 LIPGGTAGAAFYTFR-QPGVYAYVNHN 142 (173) T ss_dssp CBCTTEEEEEEEECC-SCEEEEEEESS T ss_pred ECCCCCCEEEEEEEC-CCEEEEEEECH T ss_conf 726884289999916-86379999445 No 37 >d1mzya2 b.6.1.3 (A:194-371) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Probab=26.43 E-value=11 Score=13.48 Aligned_cols=12 Identities=17% Similarity=0.168 Sum_probs=8.7 Q ss_pred CCCCCEEEEECC Q ss_conf 897007999839 Q gi|254780879|r 541 GGYGKQTLIHHG 552 (652) Q Consensus 541 ~GyGn~V~I~H~ 552 (652) .--|.|..+.|+ T Consensus 135 ~~PG~Y~~VdH~ 146 (178) T d1mzya2 135 LQPGVYAYVNHN 146 (178) T ss_dssp CSCEEEEEEESS T ss_pred CCCEEEEEECCH T ss_conf 798388887638 No 38 >d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]} Probab=26.40 E-value=13 Score=12.97 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=19.3 Q ss_pred CEEEEEECCCCCHHHHHHHCCCC Q ss_conf 01368841797089999974999 Q gi|254780879|r 275 ADDLIPIQHNTTIFDAMVHAGYS 297 (652) Q Consensus 275 ~e~~v~VK~GDTL~~IL~r~Gvs 297 (652) .++.+.+..|+||..+|.++|+. T Consensus 10 ~~~~i~~~~G~tLl~al~~~gi~ 32 (93) T d1l5pa_ 10 VKKQLKFEDDQTLFTVLTEAGLM 32 (93) T ss_dssp EEEEEECCTTEEHHHHHHTTTSS T ss_pred EEEEEEECCCCHHHHHHHHHCCC T ss_conf 59999968986099999870887 No 39 >d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Probab=25.49 E-value=13 Score=12.86 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.1 Q ss_pred EEEEEECCCCCHHHHHHHCCCC Q ss_conf 1368841797089999974999 Q gi|254780879|r 276 DDLIPIQHNTTIFDAMVHAGYS 297 (652) Q Consensus 276 e~~v~VK~GDTL~~IL~r~Gvs 297 (652) ++.+.|..|+||.+++.++|+. T Consensus 15 ~~ti~v~~g~siLdaa~~~Gi~ 36 (98) T d1frda_ 15 DTTIEIDEETTILDGAEENGIE 36 (98) T ss_dssp EEEEEEETTSCHHHHHHHTTCC T ss_pred EEEEEECCCCHHHHHHHHCCCC T ss_conf 3999959797099999886998 No 40 >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Probab=24.94 E-value=13 Score=12.79 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=23.5 Q ss_pred CCCEEEEEHHHHHHHH--CCCCCCEEECCCEEEEECCCCCC Q ss_conf 9974882002144541--18899788349589984166788 Q gi|254780879|r 552 GNGYVSSYNHQDAIAK--NIKAGTAVKQGQIIGWIGTTGLS 590 (652) Q Consensus 552 ~~Gy~T~YaHlS~~a~--gV~~G~~V~qGQvIG~vGsTG~S 590 (652) ..-.....+..+.... .++.|+.|+.||+|+.+.-.+-| T Consensus 38 ~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~~a 78 (79) T d1iyua_ 38 AKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA 78 (79) T ss_dssp SSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCCSC T ss_pred CCCEEEEEECCCCEEEEEEECCCCEECCCCEEEEEECCCCC T ss_conf 67178998036648999850898998899999999467668 No 41 >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Probab=24.04 E-value=14 Score=12.68 Aligned_cols=46 Identities=7% Similarity=0.063 Sum_probs=19.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHH Q ss_conf 3342226654456777764013688417970899999749998999999 Q gi|254780879|r 256 EENRTITSPQVLIDKIPEFADDLIPIQHNTTIFDAMVHAGYSNGDSAKI 304 (652) Q Consensus 256 ~en~t~~~~~~~~~~~~~~~e~~v~VK~GDTL~~IL~r~Gvs~~ei~~i 304 (652) =+||++.-+.. ........-...|++|+.+. |.-..|--...+.++ T Consensus 14 ~~nvsf~Y~~~--~~~~vL~~isl~i~~Ge~va-ivG~sGsGKSTLl~l 59 (251) T d1jj7a_ 14 FQDVSFAYPNR--PDVLVLQGLTFTLRPGEVTA-LVGPNGSGKSTVAAL 59 (251) T ss_dssp EEEEEECCTTS--TTCCSEEEEEEEECTTCEEE-EECSTTSSHHHHHHH T ss_pred EEEEEEECCCC--CCCEEEECEEEEECCCCEEE-EECCCCCCHHHHHHH T ss_conf 99989988999--99976744389984998999-999999849999999 No 42 >d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} Probab=22.09 E-value=15 Score=12.42 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.8 Q ss_pred CEEEEEECCCCCHHHHHHHCCCC Q ss_conf 01368841797089999974999 Q gi|254780879|r 275 ADDLIPIQHNTTIFDAMVHAGYS 297 (652) Q Consensus 275 ~e~~v~VK~GDTL~~IL~r~Gvs 297 (652) .++.+.+..|+||.+++.++|++ T Consensus 11 ~~~~i~~~~G~tLl~aa~~~gi~ 33 (106) T d1xlqa1 11 TRRELDVADGVSLMQAAVSNGIY 33 (106) T ss_dssp CEEEEECCTTCBHHHHHHHTTCT T ss_pred CEEEEEECCCCHHHHHHHHHCCC T ss_conf 88999969997199999870867 No 43 >d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]} Probab=21.95 E-value=15 Score=12.40 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=18.8 Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 797089999974999899999999854 Q gi|254780879|r 283 HNTTIFDAMVHAGYSNGDSAKIAKALK 309 (652) Q Consensus 283 ~GDTL~~IL~r~Gvs~~ei~~i~~al~ 309 (652) .|.++..++++||++...|.+|+.... T Consensus 65 ~G~n~~eLA~kY~lS~~~I~~Ii~~~r 91 (94) T d1rr7a_ 65 NGRNVSELTTRYGVTFNTVYKAIRRMR 91 (94) T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 899899999998977999999999977 No 44 >d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} Probab=21.21 E-value=16 Score=12.30 Aligned_cols=23 Identities=9% Similarity=0.279 Sum_probs=18.2 Q ss_pred CEEEEEECCCCCHHHHHHHCCCC Q ss_conf 01368841797089999974999 Q gi|254780879|r 275 ADDLIPIQHNTTIFDAMVHAGYS 297 (652) Q Consensus 275 ~e~~v~VK~GDTL~~IL~r~Gvs 297 (652) .++.+.+..|+||.+++.++|++ T Consensus 11 ~~~~v~~~~G~tLl~aa~~~gi~ 33 (105) T d1b9ra_ 11 GEYAVDAQDGQSLMEVATQNGVP 33 (105) T ss_dssp SCEEEECCTTCCTTHHHHHHTCC T ss_pred CEEEEEECCCCCHHHHHHHCCCC T ss_conf 88999979999099999875987 No 45 >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=21.21 E-value=16 Score=12.30 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=6.6 Q ss_pred CCEEECCCCEEEEEE Q ss_conf 727971596799965 Q gi|254780879|r 524 TPIVAVGDGIVEKAN 538 (652) Q Consensus 524 TPI~Aag~G~V~~ag 538 (652) .-|+--.+|.|+..| T Consensus 225 DrI~vl~~G~i~~~G 239 (281) T d1r0wa_ 225 DKILILHQGSSYFYG 239 (281) T ss_dssp SEEEEEETTEEEEEE T ss_pred CEEEEEECCEEEEEC T ss_conf 999999899999987 No 46 >d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]} Probab=21.16 E-value=16 Score=12.29 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=15.2 Q ss_pred CCCEEEEECCCCCCCCCEEEEEEEEC-CEE Q ss_conf 49589984166788874268899786-788 Q gi|254780879|r 577 QGQIIGWIGTTGLSTGPHLHYELIVN-GIK 605 (652) Q Consensus 577 qGQvIG~vGsTG~STGPHLHfEv~vn-G~~ 605 (652) .|+...|+||.| ++||-+| |.. T Consensus 68 ~Ge~l~~~~S~g-------~leIain~GsA 90 (106) T d1rqpa1 68 IGNIAIYLNSRG-------YLSIARNAASL 90 (106) T ss_dssp TTCEEEEECTTS-------EEEEEETTBCS T ss_pred CCCEEEEECCCC-------EEEEEEECCCH T ss_conf 897999985899-------29999937797 No 47 >d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} Probab=20.76 E-value=16 Score=12.24 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=18.4 Q ss_pred EEEEEECCCCCHHHHHHHCCCC Q ss_conf 1368841797089999974999 Q gi|254780879|r 276 DDLIPIQHNTTIFDAMVHAGYS 297 (652) Q Consensus 276 e~~v~VK~GDTL~~IL~r~Gvs 297 (652) +..+.+..|+||..++.++|+. T Consensus 14 ~~~i~~~~G~tLl~~~~~~gi~ 35 (104) T d2bt6a1 14 TLTTKGKIGDSLLDVVVQNNLD 35 (104) T ss_dssp EEEEEEETTCBHHHHHHHTTCC T ss_pred EEEEEECCCCHHHHHHHHCCCC T ss_conf 9999959985299999985997 No 48 >d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Probab=20.53 E-value=6.5 Score=15.02 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=31.6 Q ss_pred EEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHC------CCCHHHCCCCCEEEEEE Q ss_conf 688417970899999749998999999998540------15610169988899997 Q gi|254780879|r 278 LIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKN------EVRVDQLTKDEILRIGV 327 (652) Q Consensus 278 ~v~VK~GDTL~~IL~r~Gvs~~ei~~i~~al~~------~~~~~~Lr~Gq~L~I~~ 327 (652) .+.+..+-||.++|...+++..-++ -++|+ .+....|+.|+++.|.. T Consensus 8 ~~~~~~~~tl~~ll~~l~~~~~~va---V~vN~~ivpk~~~~~~~L~~gD~ieIv~ 60 (65) T d1zud21 8 AMQCAAGQTVHELLEQLDQRQAGAA---LAINQQIVPREQWAQHIVQDGDQILLFQ 60 (65) T ss_dssp EECCCTTCBHHHHHHHHTCCCTTEE---EEETTEECCGGGTTTCBCCTTCEEEEEE T ss_pred EEECCCCCCHHHHHHHCCCCCCCEE---EEECCEECCHHHHHHCCCCCCCEEEEEE T ss_conf 8776999969999997499988289---9999998288897045689979999998 No 49 >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Probab=20.38 E-value=16 Score=12.18 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=4.9 Q ss_pred EEECCCCEEEEEE Q ss_conf 7971596799965 Q gi|254780879|r 526 IVAVGDGIVEKAN 538 (652) Q Consensus 526 I~Aag~G~V~~ag 538 (652) |+--.+|+|+..| T Consensus 220 v~vl~~G~Iv~~G 232 (253) T d3b60a1 220 IVVVEDGIIVERG 232 (253) T ss_dssp EEEEETTEEEEEE T ss_pred EEEEECCEEEEEC T ss_conf 9999899999988 Done!