RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780879|ref|YP_003065292.1| hypothetical protein
CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62]
(652 letters)
>gnl|CDD|31082 COG0739, NlpD, Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane].
Length = 277
Score = 144 bits (363), Expect = 6e-35
Identities = 76/212 (35%), Positives = 103/212 (48%), Gaps = 6/212 (2%)
Query: 420 HLKPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVDGSVEYFNENGK 479
LK D + S A + L + A + + ++ GK
Sbjct: 68 ALKLGDAIALLLSRIIAEKTRRIRLKGLKLEANALSLLVETFAAAEVAFLPGDAYDVGGK 127
Query: 480 SSRPFLLRTPVP--FGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKA 537
F LR P+P G+++SGFG R HP+ G H G+D AAP GTP+ A DG+V A
Sbjct: 128 LLELFGLRWPLPNGKGKISSGFGRRIHPVTGRLEPHKGIDIAAPEGTPVYAAADGVVVFA 187
Query: 538 -NWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLH 596
N GYG +I HG+GYV+ Y H +I +K G VK GQ+IG++G+TG STGPHLH
Sbjct: 188 GNGGWGYGNLVIIKHGDGYVTVYAHLSSI--LVKEGQKVKAGQVIGYVGSTGRSTGPHLH 245
Query: 597 YELIVNGIKVDS-TKVRIPERENLKGDLLQRF 627
+E+ NG V R + L G L
Sbjct: 246 FEVRKNGKLVPPVNPARYLPKGGLLGKLESAL 277
>gnl|CDD|144954 pfam01551, Peptidase_M23, Peptidase family M23. Members of this
family are zinc metallopeptidases with a range of
specificities. The peptidase family M23 is included in
this family, these are Gly-Gly endopeptidases. Peptidase
family M23 are also endopeptidases. This family also
includes some bacterial lipoproteins, for which no
proteolytic activity has been demonstrated. This family
also includes leukocyte cell-derived chemotaxin 2
(LECT2) proteins. LECT2 is a liver-specific protein
which is thought to be linked to hepatocyte growth
although the exact function of this protein is unknown.
Length = 96
Score = 135 bits (342), Expect = 4e-32
Identities = 51/97 (52%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 511 RMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIK 570
R H G+D AAP GTP+ A DG+V A + GGYG +I HGNGY + Y H I +K
Sbjct: 1 RFHKGIDIAAPTGTPVYAAADGVVVFAGYLGGYGNLVIIDHGNGYETLYAHLSKIL--VK 58
Query: 571 AGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVD 607
G VK GQ+IG +G+TG STGPHLH+E+ NG VD
Sbjct: 59 VGQRVKAGQVIGTVGSTGRSTGPHLHFEIRKNGKPVD 95
>gnl|CDD|34550 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 78.9 bits (194), Expect = 4e-15
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 486 LRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDW-----AAPRGTPIVAVGDGIVEKANWA 540
L PV GR+ FG G+ W A G + A+ DG V A+W
Sbjct: 299 LAWPVT-GRILRRFG---------QADGGGLRWKGMVIGASAGATVKAIADGRVVYADWL 348
Query: 541 GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELI 600
GYG ++ HG GY S Y +I + G VK G+ I +G++G P L++E+
Sbjct: 349 RGYGLVVILDHGGGYHSLYGGNQSI--LVNPGQFVKAGEPIALVGSSGGQGRPALYFEIR 406
Query: 601 VNGIKVDST 609
G V+
Sbjct: 407 RQGQPVNPQ 415
>gnl|CDD|39095 KOG3892, KOG3892, KOG3892, N-acetyl-glucosamine-6-phosphate
deacetylase [Carbohydrate transport and metabolism].
Length = 407
Score = 30.4 bits (68), Expect = 1.8
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 20/102 (19%)
Query: 523 GTPIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIG 582
G + + G E A W+G T I H + ++H+D ++G
Sbjct: 211 GHSVADLRAG--EDAVWSGA----TFITHLFNAMLPFHHRDP--------------GLVG 250
Query: 583 WIGTTGLSTGPHLHYELIVNGIKVDSTKVRIPERENLKGDLL 624
+ + L G ++Y +I +G +RI R + +G +L
Sbjct: 251 LLTSDRLPAGRCIYYGIISDGTHTHPAALRIAYRTHPQGLVL 292
>gnl|CDD|33342 COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic
ion transport and metabolism].
Length = 522
Score = 30.0 bits (67), Expect = 2.1
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 141 FATPYPKVKDHPKFDPLKIFSEGKIESSSQMLMDTIHNVDSFEVTTQKIN 190
F + L+ F E + S+ + + + + F V K
Sbjct: 468 FNNAPGRGYVLCPVAGLQFFGEVMVVSAIRDMTVRLSDRAGFIVLPGKPG 517
>gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 322
Score = 29.2 bits (65), Expect = 3.3
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 517 DWAAP--RGTPIVAVG--DGIVEKANWAGGYGKQT-LIHHGNGYVSSYNHQDAIAKNIK 570
D AAP R P+ +G D +E+A + Y + +IH + + +S Q KN
Sbjct: 149 DGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPN 207
>gnl|CDD|37622 KOG2411, KOG2411, KOG2411, Aspartyl-tRNA synthetase, mitochondrial
[Translation, ribosomal structure and biogenesis].
Length = 628
Score = 29.2 bits (65), Expect = 3.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 595 LHYELIVNGIKVDSTKVRIPERENLKGDLLQRFAME 630
HY+L+VNG+++ +RI + +QR+ +E
Sbjct: 513 QHYDLVVNGVELGGGSIRIHNPD------IQRYVLE 542
>gnl|CDD|36641 KOG1428, KOG1428, KOG1428, Inhibitor of type V adenylyl
cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1
[Signal transduction mechanisms].
Length = 3738
Score = 29.3 bits (65), Expect = 3.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 525 PIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYN 560
+ G G A W G G ++IH +SS N
Sbjct: 867 KVSGFGPGFNAFAGWIGADGDSSIIHSHTALLSSDN 902
>gnl|CDD|37588 KOG2377, KOG2377, KOG2377, Uncharacterized conserved protein
[Function unknown].
Length = 657
Score = 28.9 bits (64), Expect = 4.6
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 161 SEGKIESSSQMLMDTIHNVDSFEVTTQKINFPTDITRIQLDHTAQDEEIKNAIMNQFFLL 220
+G+I+S L + I V T NF D ++++ + KNA + F
Sbjct: 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK---TKNANILGFCWT 121
Query: 221 HNK-----KNQSFTLYYADPQ 236
+ +Q Y P+
Sbjct: 122 SSTEIAFITDQGIEFYQVLPE 142
>gnl|CDD|37480 KOG2269, KOG2269, KOG2269, Serine/threonine protein kinase [Signal
transduction mechanisms].
Length = 531
Score = 28.9 bits (64), Expect = 4.8
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 492 FGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAGGYGKQTLIHH 551
G+ S MR H + T VD + R + G++E + GK++++ H
Sbjct: 212 HGKSESKRSMRNHEKEEKATAETSVD-SDTRLLLYKWINQGVLESIDGIISTGKESVVLH 270
Query: 552 GNGYVSSYNHQDA 564
+ + HQD
Sbjct: 271 AYAGSNEHGHQDP 283
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in
Streptococcal C5a peptidases. Streptococcal C5a
peptidase (SCP), is a highly specific protease and
adhesin/invasin. The subtilisin-like protease domain is
located at the N-terminus and contains a
protease-associated domain inserted into a loop. There
are three fibronectin type III (Fn) domains at the
C-terminus. SCP binds to integrins with the help of
Arg-Gly-Asp motifs which are thought to stabilize
conformational changes required for substrate binding.
Peptidases S8 or Subtilases are a serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 346
Score = 28.4 bits (64), Expect = 6.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 100 RLSPKTKSKHPEKIIIEVPTLIKDHNKDIIKKIPFAY 136
RL +K+K+ E+ + + K +K+PFAY
Sbjct: 30 RLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAY 66
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,894,973
Number of extensions: 428686
Number of successful extensions: 999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 996
Number of HSP's successfully gapped: 22
Length of query: 652
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 552
Effective length of database: 4,102,837
Effective search space: 2264766024
Effective search space used: 2264766024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.5 bits)