RPSBLAST alignment of GI: 254780879 and protein with PDBid: 3nyy
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus} Length = 252
Score = 148 bits (374), Expect = 4e-36
Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 27/221 (12%)
Query: 407 IMRTLASSVNLQEHLKPTDFLETFFSVNHANNQ-------ASDDSELLYIHARFGETRTR 459
+ + + S + + ++ ++ + + A+D + +
Sbjct: 8 LQKPVVSQPDFRR-QPVSETMQVYLKQAADPGRDVGLYWMATDFENRRFPGKVSPSGFQK 66
Query: 460 FYRFLNPVDGSVEYFNENGKSSRPFLLRTPVPFGRMTSGFGMRY------HPILGYSRMH 513
YR + + ++ ++ + P+P + + Y G R H
Sbjct: 67 LYRQWRN-QTGWDAYVQSCRAIWNDVKYFPIPQSLDDTEDKISYVDSWMFERNYGGKRGH 125
Query: 514 TGVDWAAPRGT----PIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNI 569
G D A + T P+V++ DG+V + W G + I G Y H D+ A+ +
Sbjct: 126 EGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAE-L 184
Query: 570 KAGTAVKQGQIIGWIGTTGLST-------GPHLHYELIVNG 603
+ G VK G ++G++G +G HLH + +
Sbjct: 185 EKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKE 225