RPSBLAST alignment of GI: 254780879 and protein with PDBid: 3nyy

>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus} Length = 252
 Score =  148 bits (374), Expect = 4e-36
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 27/221 (12%)

Query: 407 IMRTLASSVNLQEHLKPTDFLETFFSVNHANNQ-------ASDDSELLYIHARFGETRTR 459
           + + + S  + +     ++ ++ +        +       A+D     +          +
Sbjct: 8   LQKPVVSQPDFRR-QPVSETMQVYLKQAADPGRDVGLYWMATDFENRRFPGKVSPSGFQK 66

Query: 460 FYRFLNPVDGSVEYFNENGKSSRPFLLRTPVPFGRMTSGFGMRY------HPILGYSRMH 513
            YR         + + ++ ++    +   P+P     +   + Y          G  R H
Sbjct: 67  LYRQWRN-QTGWDAYVQSCRAIWNDVKYFPIPQSLDDTEDKISYVDSWMFERNYGGKRGH 125

Query: 514 TGVDWAAPRGT----PIVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNI 569
            G D  A + T    P+V++ DG+V +  W    G +  I    G    Y H D+ A+ +
Sbjct: 126 EGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAE-L 184

Query: 570 KAGTAVKQGQIIGWIGTTGLST-------GPHLHYELIVNG 603
           + G  VK G ++G++G +G            HLH  + +  
Sbjct: 185 EKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKE 225