RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] (652 letters) >d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]} Length = 270 Score = 125 bits (316), Expect = 8e-30 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 493 GRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAG-GYGKQTLIHH 551 + +G +YH H GVD+A P +P+ ++ DG V +A W+ G G Q I Sbjct: 151 RKQLQPYG-QYHG----GGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKE 205 Query: 552 GN-GYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIK 605 N Y H + + + AG VK G I + G+TG ST PH+H++ + GI Sbjct: 206 ANSNNYQWYMHNNRL--TVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIG 258 >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Length = 373 Score = 30.4 bits (67), Expect = 0.51 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 16/63 (25%) Query: 287 IFDAMVHAGYSNGDSAKIAKALKN--------EVRVD----QLTKDEILRIGVVQKDDKF 334 + A AG N + + L + VRV+ RI + F Sbjct: 290 LGRAAQAAG--NWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLS--SRIAEIDARGVF 345 Query: 335 TIV 337 + Sbjct: 346 QVR 348 >d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Score = 28.9 bits (64), Expect = 1.4 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 288 FDAMVHAGYSNGDSAKIA-KALKNEVRVDQLTKDEILRIGVVQKDDKFTIV 337 D + + + K +A+ +R + LT D + I +V KD FTI Sbjct: 175 LDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNL-SIAIVGKDTPFTIY 224 >d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Score = 27.8 bits (62), Expect = 3.1 Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 4/86 (4%) Query: 97 QRARLSPKTKSKHPEKIIIEVPTLIKDHNKDIIKKIPFAYAR-MTFATPYPKVKDHPKFD 155 QR + +HP KI + + + ++ K F + + ++ + + Sbjct: 14 QRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLN 73 Query: 156 P---LKIFSEGKIESSSQMLMDTIHN 178 + G S + ++ Sbjct: 74 ANQAFFLLVNGHSMVSVSTPISEVYE 99 >d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 Score = 27.3 bits (60), Expect = 4.5 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 282 QHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIV 337 + + D I +K + V Q I + V+++D I+ Sbjct: 165 KSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNI-ELAVMRRDQSLKIL 219 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.135 0.394 Gapped Lambda K H 0.267 0.0635 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,436,154 Number of extensions: 118359 Number of successful extensions: 311 Number of sequences better than 10.0: 1 Number of HSP's gapped: 309 Number of HSP's successfully gapped: 10 Length of query: 652 Length of database: 2,407,596 Length adjustment: 91 Effective length of query: 561 Effective length of database: 1,158,166 Effective search space: 649731126 Effective search space used: 649731126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.5 bits)