RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780879|ref|YP_003065292.1| hypothetical protein
CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62]
         (652 letters)



>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 270

 Score =  125 bits (316), Expect = 8e-30
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 493 GRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWAG-GYGKQTLIHH 551
            +    +G +YH        H GVD+A P  +P+ ++ DG V +A W+  G G Q  I  
Sbjct: 151 RKQLQPYG-QYHG----GGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKE 205

Query: 552 GN-GYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIK 605
            N      Y H + +   + AG  VK G  I + G+TG ST PH+H++ +  GI 
Sbjct: 206 ANSNNYQWYMHNNRL--TVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIG 258


>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the
           amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId:
           287]}
          Length = 373

 Score = 30.4 bits (67), Expect = 0.51
 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 16/63 (25%)

Query: 287 IFDAMVHAGYSNGDSAKIAKALKN--------EVRVD----QLTKDEILRIGVVQKDDKF 334
           +  A   AG  N     + + L +         VRV+            RI  +     F
Sbjct: 290 LGRAAQAAG--NWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLS--SRIAEIDARGVF 345

Query: 335 TIV 337
            + 
Sbjct: 346 QVR 348


>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 233

 Score = 28.9 bits (64), Expect = 1.4
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 288 FDAMVHAGYSNGDSAKIA-KALKNEVRVDQLTKDEILRIGVVQKDDKFTIV 337
            D  +    +  +  K   +A+   +R + LT D +  I +V KD  FTI 
Sbjct: 175 LDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNL-SIAIVGKDTPFTIY 224


>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B
           light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 27.8 bits (62), Expect = 3.1
 Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 97  QRARLSPKTKSKHPEKIIIEVPTLIKDHNKDIIKKIPFAYAR-MTFATPYPKVKDHPKFD 155
           QR       + +HP KI + +     +    ++ K  F     +  +     ++   + +
Sbjct: 14  QRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLN 73

Query: 156 P---LKIFSEGKIESSSQMLMDTIHN 178
                 +   G    S    +  ++ 
Sbjct: 74  ANQAFFLLVNGHSMVSVSTPISEVYE 99


>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 243

 Score = 27.3 bits (60), Expect = 4.5
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 282 QHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIV 337
           +      +          D   I   +K  + V Q     I  + V+++D    I+
Sbjct: 165 KSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNI-ELAVMRRDQSLKIL 219


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,436,154
Number of extensions: 118359
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 10
Length of query: 652
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 561
Effective length of database: 1,158,166
Effective search space: 649731126
Effective search space used: 649731126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)