BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780879|ref|YP_003065292.1| hypothetical protein
CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62]
(652 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 652
Score = 1350 bits (3495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/652 (100%), Positives = 652/652 (100%)
Query: 1 MTLCTISNKRDILFSFGDTPPILGNNDAKIFLDNRRKVSLRWLSTTFFAGITSGVIIGGS 60
MTLCTISNKRDILFSFGDTPPILGNNDAKIFLDNRRKVSLRWLSTTFFAGITSGVIIGGS
Sbjct: 1 MTLCTISNKRDILFSFGDTPPILGNNDAKIFLDNRRKVSLRWLSTTFFAGITSGVIIGGS 60
Query: 61 LLTALDGHQKIAIPAKLSHQTSEENAINLSAKLSSMQRARLSPKTKSKHPEKIIIEVPTL 120
LLTALDGHQKIAIPAKLSHQTSEENAINLSAKLSSMQRARLSPKTKSKHPEKIIIEVPTL
Sbjct: 61 LLTALDGHQKIAIPAKLSHQTSEENAINLSAKLSSMQRARLSPKTKSKHPEKIIIEVPTL 120
Query: 121 IKDHNKDIIKKIPFAYARMTFATPYPKVKDHPKFDPLKIFSEGKIESSSQMLMDTIHNVD 180
IKDHNKDIIKKIPFAYARMTFATPYPKVKDHPKFDPLKIFSEGKIESSSQMLMDTIHNVD
Sbjct: 121 IKDHNKDIIKKIPFAYARMTFATPYPKVKDHPKFDPLKIFSEGKIESSSQMLMDTIHNVD 180
Query: 181 SFEVTTQKINFPTDITRIQLDHTAQDEEIKNAIMNQFFLLHNKKNQSFTLYYADPQTLDQ 240
SFEVTTQKINFPTDITRIQLDHTAQDEEIKNAIMNQFFLLHNKKNQSFTLYYADPQTLDQ
Sbjct: 181 SFEVTTQKINFPTDITRIQLDHTAQDEEIKNAIMNQFFLLHNKKNQSFTLYYADPQTLDQ 240
Query: 241 RHDHPITYSKKIKIIEENRTITSPQVLIDKIPEFADDLIPIQHNTTIFDAMVHAGYSNGD 300
RHDHPITYSKKIKIIEENRTITSPQVLIDKIPEFADDLIPIQHNTTIFDAMVHAGYSNGD
Sbjct: 241 RHDHPITYSKKIKIIEENRTITSPQVLIDKIPEFADDLIPIQHNTTIFDAMVHAGYSNGD 300
Query: 301 SAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIALNDNNEYV 360
SAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIALNDNNEYV
Sbjct: 301 SAKIAKALKNEVRVDQLTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIALNDNNEYV 360
Query: 361 LGVEPVKMDINHQMDYMRTSEESPNIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEH 420
LGVEPVKMDINHQMDYMRTSEESPNIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEH
Sbjct: 361 LGVEPVKMDINHQMDYMRTSEESPNIYDGIWRATSFNGMNSNLVKLIMRTLASSVNLQEH 420
Query: 421 LKPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVDGSVEYFNENGKS 480
LKPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVDGSVEYFNENGKS
Sbjct: 421 LKPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVDGSVEYFNENGKS 480
Query: 481 SRPFLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA 540
SRPFLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA
Sbjct: 481 SRPFLLRTPVPFGRMTSGFGMRYHPILGYSRMHTGVDWAAPRGTPIVAVGDGIVEKANWA 540
Query: 541 GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELI 600
GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELI
Sbjct: 541 GGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIGTTGLSTGPHLHYELI 600
Query: 601 VNGIKVDSTKVRIPERENLKGDLLQRFAMEKKRINSLLNNGENPKKPLFTSH 652
VNGIKVDSTKVRIPERENLKGDLLQRFAMEKKRINSLLNNGENPKKPLFTSH
Sbjct: 601 VNGIKVDSTKVRIPERENLKGDLLQRFAMEKKRINSLLNNGENPKKPLFTSH 652
>gi|254780683|ref|YP_003065096.1| lipoprotein [Candidatus Liberibacter asiaticus str. psy62]
Length = 84
Score = 42.0 bits (97), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 526 IVAVGDGIVEKANWAGGYGKQTLIHHGNGYVSSYNHQDAIAKNIKAGTAVKQGQIIGWIG 585
++ VG+ +VE G LI H + V+ Y+H D ++ G V +G IG G
Sbjct: 2 VIYVGNDLVE-------LGNTILIRHDDSIVTVYSHID--TPYVQKGQKVSRGHTIGLSG 52
Query: 586 TTGLSTGPHLHYELIVNGIKVDSTK 610
+G + P +H+EL N I +D K
Sbjct: 53 KSGNAQHPQVHFELRKNAIAMDPIK 77
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 32.0 bits (71), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 422 KPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVD--GSVEY-FNENG 478
K + L+TF + ++++ S+ ++ I+ G+ R+ RF+ ++ G++ Y
Sbjct: 175 KTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVA 234
Query: 479 KSSRPFLLRTPVPFGRMTSGFGMR---YHPILGYSRMH 513
+S P ++ PF G R YH ++ Y +
Sbjct: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQ 272
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 28.1 bits (61), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 449 IHARFGETRTRFYRFLNPVDGSVEYFNENGKSSRPFL 485
I RF + FYR +PVDGS + E+ K+ FL
Sbjct: 612 IKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFL 648
>gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus
str. psy62]
Length = 297
Score = 25.4 bits (54), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 265 QVLIDKIPEFA---DDLIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDE 321
Q+L++ I + +D I + D + AGY AK A A + ++R+D +
Sbjct: 222 QILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEA 281
Query: 322 ILRIGVVQKDD 332
+L I +KD+
Sbjct: 282 LLYIQGYKKDE 292
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 23.9 bits (50), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 558 SYNHQDAIAKNIKAGTA-VKQGQIIGWIGTTGLSTGPHLHYEL--IVNG-IKVDSTKVRI 613
SYNH + I K I A K+ +IG G G ST L Y L I G I +D ++
Sbjct: 365 SYNHHNCIFKGISFEIAPSKKTALIGESG-VGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423
Query: 614 PERENLK 620
+E+L+
Sbjct: 424 ITKESLR 430
>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 23.9 bits (50), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 34/117 (29%)
Query: 521 PRGTPIVAVGDGIVEKANWAGGYG-KQTLIHHGNGYVSSYN------------------- 560
P+ T I+ G VE A G K TL+ GN +S ++
Sbjct: 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVF 227
Query: 561 HQDAIAKNI----------KAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVD 607
H D I + K+G VK Q+I +G T +TG L G+K+D
Sbjct: 228 HNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKV----GVKMD 280
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,248
Number of Sequences: 1233
Number of extensions: 19134
Number of successful extensions: 48
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 12
length of query: 652
length of database: 328,796
effective HSP length: 80
effective length of query: 572
effective length of database: 230,156
effective search space: 131649232
effective search space used: 131649232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)