RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780880|ref|YP_003065293.1| hypothetical protein
CLIBASIA_03885 [Candidatus Liberibacter asiaticus str. psy62]
         (40 letters)



>2q7s_A N-formylglutamate amidohydrolase; YP_297560.1, structural genomics,
           joint center for structural genomics, JCSG; HET: MSE;
           2.00A {Ralstonia eutropha JMP134} SCOP: c.56.5.9
          Length = 290

 Score = 24.7 bits (53), Expect = 5.5
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 3   IDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAA 37
           +     Q R   ++ P+HA   + V    + +GA 
Sbjct: 132 LTVAEVQRRINRYYRPYHAALTEAVEGAYQRFGAV 166


>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
           alpha helices, alternative splicing, amyloid,
           amyloidosis, blood coagulation, coiled coil; HET: NAG
           NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
           1deq_B 2a45_H*
          Length = 461

 Score = 24.3 bits (52), Expect = 5.9
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 2   TIDNESNQARKGIWWMPWH 20
           T D   +    G+ WM W 
Sbjct: 423 TWDMAKHGTDDGVVWMNWK 441


>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
           blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
           SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
          Length = 464

 Score = 24.0 bits (51), Expect = 8.4
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 2   TIDNESNQARKGIWWMPWH 20
           + D   +    GI WM W 
Sbjct: 427 SWDMAKHGTDDGIVWMNWK 445


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.130    0.500 

Gapped
Lambda     K      H
   0.267   0.0468    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 390,035
Number of extensions: 8148
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 12
Length of query: 40
Length of database: 5,693,230
Length adjustment: 14
Effective length of query: 26
Effective length of database: 5,353,814
Effective search space: 139199164
Effective search space used: 139199164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.7 bits)