RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter asiaticus str. psy62] (40 letters) >2q7s_A N-formylglutamate amidohydrolase; YP_297560.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Ralstonia eutropha JMP134} SCOP: c.56.5.9 Length = 290 Score = 24.7 bits (53), Expect = 5.5 Identities = 8/35 (22%), Positives = 15/35 (42%) Query: 3 IDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAA 37 + Q R ++ P+HA + V + +GA Sbjct: 132 LTVAEVQRRINRYYRPYHAALTEAVEGAYQRFGAV 166 >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Length = 461 Score = 24.3 bits (52), Expect = 5.9 Identities = 6/19 (31%), Positives = 8/19 (42%) Query: 2 TIDNESNQARKGIWWMPWH 20 T D + G+ WM W Sbjct: 423 TWDMAKHGTDDGVVWMNWK 441 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464 Score = 24.0 bits (51), Expect = 8.4 Identities = 6/19 (31%), Positives = 8/19 (42%) Query: 2 TIDNESNQARKGIWWMPWH 20 + D + GI WM W Sbjct: 427 SWDMAKHGTDDGIVWMNWK 445 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.130 0.500 Gapped Lambda K H 0.267 0.0468 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 390,035 Number of extensions: 8148 Number of successful extensions: 40 Number of sequences better than 10.0: 1 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 12 Length of query: 40 Length of database: 5,693,230 Length adjustment: 14 Effective length of query: 26 Effective length of database: 5,353,814 Effective search space: 139199164 Effective search space used: 139199164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.7 bits)