HHSEARCH alignment of GI: 254780881 and SCOP domain: d2cu6a1

Alignment
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=99.76  E-value=2.5e-19  Score=127.18  Aligned_cols=87  Identities=17%  Similarity=0.194  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf             58999999841418799976232387010133698799999967222206899999999998539853406999970789
Q gi|254780881|r    5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKN   84 (101)
Q Consensus         5 ~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~   84 (101)
                      ++++|+++|++|.||++++||+++|||+++.+++|++.|.+++++++|+..+.|.++++++|++++|+.+|.|.+|++++
T Consensus         2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~~~~v~v~l~lt~~~cp~~~~i~~~i~~al~~l~gv~~V~V~~~~~p~   81 (91)
T d2cu6a1           2 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPP   81 (91)
T ss_dssp             HHHHHHHHHTTCEETTTTEETTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECCSSC
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf             69999999836889999968421455037899426418999748889747999999999999808997328999996599


Q ss_pred             CCCCCCC
Q ss_conf             8732156
Q gi|254780881|r   85 PPQQRNN   91 (101)
Q Consensus        85 ~~~~~~~   91 (101)
                      |......
T Consensus        82 W~~~~is   88 (91)
T d2cu6a1          82 WTLARLS   88 (91)
T ss_dssp             CCGGGCC
T ss_pred             CCHHHCC
T ss_conf             8821267


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]