RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus
Liberibacter asiaticus str. psy62]
         (101 letters)



>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 24.3 bits (53), Expect = 2.6
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 3   QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNA 62
           ++L + I   + ++  P         Q     F     ++++I     IA  LQS   + 
Sbjct: 76  KVLTSDIERFMPIVYTPTVGLAC---QHYGLAFRRPRGLFITIHDRGHIATMLQSWPESV 132

Query: 63  QQII 66
            + I
Sbjct: 133 IKAI 136


>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 24.3 bits (53), Expect = 3.0
 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 3   QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQS 57
           +IL++ I   + ++  P          +   IF     +++SI+    +   + +
Sbjct: 78  RILQDDIESLMPIVYTPTVGLAC---SQYGHIFRRPKGLFISISDRGHVRSIVDN 129


>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
           {Thermus thermophilus [TaxId: 274]}
          Length = 107

 Score = 24.0 bits (52), Expect = 4.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 45  ITVPHTIAHQLQSLR 59
            T+ H + H L+SL 
Sbjct: 90  ETMLHELRHHLESLA 104


>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 118

 Score = 23.0 bits (49), Expect = 7.8
 Identities = 5/30 (16%), Positives = 11/30 (36%)

Query: 59  RSNAQQIIQNIPTVKNAVVTLTENKNPPQQ 88
            + A+  +Q         + L     PP++
Sbjct: 81  LAEAEAALQKAWNQGGDWIDLVVAVCPPKE 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 320,351
Number of extensions: 11721
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 9
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)