HHsearch alignment for GI: 254780882 and conserved domain: COG0582

>COG0582 XerC Integrase [DNA replication, recombination, and repair].
Probab=99.90  E-value=4.1e-22  Score=157.42  Aligned_cols=208  Identities=29%  Similarity=0.387  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC
Q ss_conf             0133211234442222333210123222222222-222221211111110156787765310135677577532012221
Q gi|254780882|r   84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL  162 (328)
Q Consensus        84 s~~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~-~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~l  162 (328)
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~------~~~~~~~~~~~-  152 (309)
T COG0582          84 STLTRVFRLAALRGFFAYLDNPG----APLKALREKPKRRKKLPKALTAEEVEALLEALDRY------RDALRLALLIL-  152 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHH-
T ss_conf             47779999999988888621631----04666531134454454548999999999998750------57899999998-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             001123322222112222233232203323---7853100011221002343221110012344665543211112211-
Q gi|254780882|r  163 LYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-  238 (328)
Q Consensus       163 l~~TGlR~~El~~L~~~did~~~~~i~v~g---Kg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~l-  238 (328)
T Consensus       153 --~tG~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~  224 (309)
T COG0582         153 --LTGLRVSELLGLRWSDIDLENGTIWIRGTKTKGRKERRVPLSEQALEALKKYLLIRRPRE------YLFLSLRGPRLS  224 (309)
T ss_pred             --HHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCC------CCCCCCCCCCCC
T ss_conf             --718779999827666505456727996135556651589605999999999998544433------006532356533


Q ss_pred             ----CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-HHCHHHHHHHHHH
Q ss_conf             ----1000123567899976869998805417999999998489988999983788878979999-6198999999999
Q gi|254780882|r  239 ----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNGGDWMME  312 (328)
Q Consensus       239 ----s~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~-h~~~~~~~~~l~~  312 (328)
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~lRht~~~~~~~~~-~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~~~~~  301 (309)
T COG0582         225 RSALTINRLLRARAKAAKEAGIR-KITPHGLRHTFATLLLAGG-DERVIQKLLGHASLNTTQTVYYHASDERLKEAALK  301 (309)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10367999999999973222788-8787740789999998568-76589998378708789999998710667899986