HHsearch alignment for GI: 254780882 and conserved domain: COG0582
>COG0582 XerC Integrase [DNA replication, recombination, and repair].
Probab=99.90 E-value=4.1e-22 Score=157.42 Aligned_cols=208 Identities=29% Similarity=0.387 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC
Q ss_conf 0133211234442222333210123222222222-222221211111110156787765310135677577532012221
Q gi|254780882|r 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162 (328)
Q Consensus 84 s~~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~-~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~l 162 (328)
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~------~~~~~~~~~~~- 152 (309)
T COG0582 84 STLTRVFRLAALRGFFAYLDNPG----APLKALREKPKRRKKLPKALTAEEVEALLEALDRY------RDALRLALLIL- 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHH-
T ss_conf 47779999999988888621631----04666531134454454548999999999998750------57899999998-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 001123322222112222233232203323---7853100011221002343221110012344665543211112211-
Q gi|254780882|r 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL- 238 (328)
Q Consensus 163 l~~TGlR~~El~~L~~~did~~~~~i~v~g---Kg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~l- 238 (328)
T Consensus 153 --~tG~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~ 224 (309)
T COG0582 153 --LTGLRVSELLGLRWSDIDLENGTIWIRGTKTKGRKERRVPLSEQALEALKKYLLIRRPRE------YLFLSLRGPRLS 224 (309)
T ss_pred --HHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCC------CCCCCCCCCCCC
T ss_conf --718779999827666505456727996135556651589605999999999998544433------006532356533
Q ss_pred ----CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-HHCHHHHHHHHHH
Q ss_conf ----1000123567899976869998805417999999998489988999983788878979999-6198999999999
Q gi|254780882|r 239 ----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNGGDWMME 312 (328)
Q Consensus 239 ----s~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~-h~~~~~~~~~l~~ 312 (328)
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~lRht~~~~~~~~~-~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~~~~~ 301 (309)
T COG0582 225 RSALTINRLLRARAKAAKEAGIR-KITPHGLRHTFATLLLAGG-DERVIQKLLGHASLNTTQTVYYHASDERLKEAALK 301 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10367999999999973222788-8787740789999998568-76589998378708789999998710667899986