HHsearch alignment for GI: 254780882 and conserved domain: COG4342
>COG4342 Uncharacterized protein conserved in archaea [Function unknown].
Probab=98.45 E-value=9.6e-07 Score=61.44 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCC--CCC-CCCHHHHHHHHHHH
Q ss_conf 9999999999986121013321123444222233321012322222222222-2221211--111-11015678776531
Q gi|254780882|r 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLP--RAL-NEKQALTLVDNVLL 143 (328)
Q Consensus 68 ~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~-k~~~~~p--~~l-t~~e~~~ll~~~~~ 143 (328)
T Consensus 57 ~k~ardyls~l~r~ig~~~~kdKy~kA~R~f~~fl~~rgiise~~Ae~lrk~lk~k~~~g~dlyIp~de~ir~~~~l~r~ 136 (291)
T COG4342 57 GKTARDYLSALNRPIGSVREKDKYQKAYRLFIKFLTSRGIISEEFAEKLRKPLKVKKSNGVDLYIPSDEEIRATEELARE 136 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHH
T ss_conf 78999999998876443110057999999999999870413399999999986457678863324987999889999988
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 01356775775320122210011233222221122222332322033237853100011221002343221110012344
Q gi|254780882|r 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 (328)
Q Consensus 144 ~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~ 223 (328)
T Consensus 137 ~~--------e~~y~v~~ll~~SGaRLse~v~~L~~-~D~s~~~~~~ng~~--icyy~l---------~w~r------g~ 190 (291)
T COG4342 137 YS--------ERAYLVYLLLLFSGARLSEAVAVLRN-LDHSRLYCVVNGKV--ICYYPL---------SWSR------GH 190 (291)
T ss_pred HC--------CHHHHHHHHHHHCCCHHHHHHHHHHC-CCHHHHEEECCCEE--EEEECC---------CHHH------CC
T ss_conf 54--------01899999998634309999999967-14312023128737--885011---------0320------45
Q ss_pred CCCCCCC-CCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHH-HHHHHH
Q ss_conf 6655432-1111221110001-235678999768699988054179999999984899889999837888789-799996
Q gi|254780882|r 224 NIQLPLF-RGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTN 300 (328)
Q Consensus 224 ~~~~~lF-~~~~g~~ls~~~i-~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~t-T~~Y~h 300 (328)
T Consensus 191 K~afyif~P~~~~~~l~kidisy~~vq~~~~~~~----Vk~kyiRkwv~nkmlelgvP~~VvdFIqGrk~~~V~~rHY~n 266 (291)
T COG4342 191 KRAFYIFHPKDFAESLRKIDISYHRVQRFENRRG----VKAKYIRKWVYNKMLELGVPEDVVDFIQGRKQSRVGTRHYAN 266 (291)
T ss_pred CCEEEEECCHHHHHHCHHCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 4115686636652001101112999999986058----209999999999999809958899998746722157899999
Q ss_pred HC
Q ss_conf 19
Q gi|254780882|r 301 VN 302 (328)
Q Consensus 301 ~~ 302 (328)
T Consensus 267 L~ 268 (291)
T COG4342 267 LL 268 (291)
T ss_pred HH
T ss_conf 99