HHsearch alignment for GI: 254780882 and conserved domain: COG4973

>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=461.02  Aligned_cols=294  Identities=32%  Similarity=0.518  Sum_probs=274.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999998625488999999999999999998512147887896898999999999999861210133211234
Q gi|254780882|r   14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS   93 (328)
Q Consensus        14 l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls   93 (328)
T Consensus         6 ~~~~~~~yl~~L~~Er~lS~hTl~~Y~rqL~~l~~~~~q~-----~~~~w~~ld~~~vr~~~a~~~~~Gl~a~SlA~rLS   80 (299)
T COG4973           6 MAADLDAYLRYLRVERQLSPHTLANYRRQLEALIALLAQM-----GLGSWQQLDPADVRAFVARSHRRGLSARSLARRLS   80 (299)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             6788999999999861468888999999999999999972-----76566656999999999998318855778999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             44222233321012322222222222222121111111015678776531013567757753201222100112332222
Q gi|254780882|r   94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA  173 (328)
Q Consensus        94 ~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El  173 (328)
T Consensus        81 a~R~f~~wLv~~g~l~~nPa~GvsaPK~~r~LPk~ld~d~~~~ll~-~-----d~~dPlavRDrAllElmY~sGLRLSEL  154 (299)
T COG4973          81 ALRSFYDWLVKQGELKANPAKGVSAPKQPRHLPKNLDVDEANRLLD-I-----DGDDPLAVRDRALLELMYGSGLRLSEL  154 (299)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC-C-----CCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             9999999998727646686456889887443777689999999966-7-----899933478999999998437008988


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             21122222332322033237853100011221002343221110012344665543211112211100012356789997
Q gi|254780882|r  174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY  253 (328)
Q Consensus       174 ~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~  253 (328)
T Consensus       155 vgLd~~~vdl~~geV~V~GKGnKeR~vP~g~~A~~al~~WL~lR~~--~a~~d~AlF~s~~G~Ris~R~iQkR~~~wgik  232 (299)
T COG4973         155 VGLDLKHVDLDEGEVRVMGKGNKERRVPVGRKAVEALEHWLALRGL--FASEDDALFLSRLGKRISARAIQKRLAQWGIK  232 (299)
T ss_pred             HCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHC--CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             4788444545542589962787346535217799999999865510--37987605310368816488999999999986


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHCC
Q ss_conf             68699988054179999999984899889999837888789799996198999999999999817300012
Q gi|254780882|r  254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK  324 (328)
Q Consensus       254 ~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~~  324 (328)
T Consensus       233 qg~~~HvhPH~LRHSFAtHmLesSgDLRaVQELLGHanlsTTQIYThLDFQH----LA~vYD~AHPRAkrk  299 (299)
T COG4973         233 QGLNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHPRAKRK  299 (299)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCHHH----HHHHHHHHCCCCCCC
T ss_conf             0322138768777788999987035489999985646512444323236899----999986317411269