HHsearch alignment for GI: 254780882 and conserved domain: COG4973
>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=461.02 Aligned_cols=294 Identities=32% Similarity=0.518 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998625488999999999999999998512147887896898999999999999861210133211234
Q gi|254780882|r 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 (328)
Q Consensus 14 l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls 93 (328)
T Consensus 6 ~~~~~~~yl~~L~~Er~lS~hTl~~Y~rqL~~l~~~~~q~-----~~~~w~~ld~~~vr~~~a~~~~~Gl~a~SlA~rLS 80 (299)
T COG4973 6 MAADLDAYLRYLRVERQLSPHTLANYRRQLEALIALLAQM-----GLGSWQQLDPADVRAFVARSHRRGLSARSLARRLS 80 (299)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 6788999999999861468888999999999999999972-----76566656999999999998318855778999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 44222233321012322222222222222121111111015678776531013567757753201222100112332222
Q gi|254780882|r 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 (328)
Q Consensus 94 ~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El 173 (328)
T Consensus 81 a~R~f~~wLv~~g~l~~nPa~GvsaPK~~r~LPk~ld~d~~~~ll~-~-----d~~dPlavRDrAllElmY~sGLRLSEL 154 (299)
T COG4973 81 ALRSFYDWLVKQGELKANPAKGVSAPKQPRHLPKNLDVDEANRLLD-I-----DGDDPLAVRDRALLELMYGSGLRLSEL 154 (299)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC-C-----CCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999998727646686456889887443777689999999966-7-----899933478999999998437008988
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 21122222332322033237853100011221002343221110012344665543211112211100012356789997
Q gi|254780882|r 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 (328)
Q Consensus 174 ~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~ 253 (328)
T Consensus 155 vgLd~~~vdl~~geV~V~GKGnKeR~vP~g~~A~~al~~WL~lR~~--~a~~d~AlF~s~~G~Ris~R~iQkR~~~wgik 232 (299)
T COG4973 155 VGLDLKHVDLDEGEVRVMGKGNKERRVPVGRKAVEALEHWLALRGL--FASEDDALFLSRLGKRISARAIQKRLAQWGIK 232 (299)
T ss_pred HCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHC--CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 4788444545542589962787346535217799999999865510--37987605310368816488999999999986
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHCC
Q ss_conf 68699988054179999999984899889999837888789799996198999999999999817300012
Q gi|254780882|r 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 (328)
Q Consensus 254 ~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~~ 324 (328)
T Consensus 233 qg~~~HvhPH~LRHSFAtHmLesSgDLRaVQELLGHanlsTTQIYThLDFQH----LA~vYD~AHPRAkrk 299 (299)
T COG4973 233 QGLNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHPRAKRK 299 (299)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCHHH----HHHHHHHHCCCCCCC
T ss_conf 0322138768777788999987035489999985646512444323236899----999986317411269