HHsearch alignment for GI: 254780882 and conserved domain: COG4974
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=518.43 Aligned_cols=294 Identities=33% Similarity=0.505 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998625488999999999999999998512147887896898999999999999861210133211234
Q gi|254780882|r 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 (328)
Q Consensus 14 l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls 93 (328)
T Consensus 5 ~~~~i~~fL~~l~~Er~ls~nTl~sYrrDL~~f~~~L~~~-----~~~~l~~~~~~di~~yl~~l~~~g~s~~S~aR~ls 79 (300)
T COG4974 5 DEALIEQFLEYLWIERGLSANTLSSYRRDLEDFREWLEER-----GITDLADATEADIREYLTELAEQGLSATSIARALS 79 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7899999999999975432644999999999999998762-----79884546899999999999857867224889999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 44222233321012322222222222222121111111015678776531013567757753201222100112332222
Q gi|254780882|r 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 (328)
Q Consensus 94 ~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El 173 (328)
T Consensus 80 alR~fy~fl~~E~~~~~dP~~~l~~PK~~~~LPk~Ls~~eve~Ll~-----~~~~~~p~~LRdrAmlELLYATGlRVSEl 154 (300)
T COG4974 80 ALRSFYQFLIREGLREDDPTRLLDSPKLPKRLPKFLSEEEVEALLE-----APDEDTPLGLRDRAMLELLYATGLRVSEL 154 (300)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHH-----CCCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999999779853382444247877776776259999999981-----88889807579999999999827759998
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-CC-CCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 21122222332322033237853100011221002343221110012344-66-55432111122111000123567899
Q gi|254780882|r 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NI-QLPLFRGIRGKPLNPGVFQRYIRQLR 251 (328)
Q Consensus 174 ~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~-~~-~~~lF~~~~g~~ls~~~i~~~~~~~~ 251 (328)
T Consensus 155 v~L~l~dv~~~~~~v~V~GKG~KeR~VP~g~~A~~~l~~Yl~~~R~~l~~~~~~~~~LF~n~~g~~ltrq~~w~~lk~~a 234 (300)
T COG4974 155 VGLTLSDVDLRQGVVRVRGKGNKERLVPFGEEAVEALEKYLEEARPKLLKGKSSTDALFPNQRGGGLTRQGFWKRLKDYA 234 (300)
T ss_pred HCCCHHHHCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 56757651324686899715882555213399999999999986598842578898564548999877999999999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH
Q ss_conf 9768699988054179999999984899889999837888789799996198999999999999817300
Q gi|254780882|r 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 (328)
Q Consensus 252 ~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~ 321 (328)
T Consensus 235 ~~Agi~~~isPH~LRHsFATHLL~~GADlRvVQeLLGHadisTTQIYTHV~----~e~L~~~~~~~HPra 300 (300)
T COG4974 235 ERAGIDKKISPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHVT----KERLRDLYAQHHPRA 300 (300)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHH----HHHHHHHHHHHCCCC
T ss_conf 981888786813657889999986785399999984866501557879988----999999999738999